Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534440 | XP_013454902.1 | 95.726 | 468 | 14 | 1 | 1 | 468 | 1 | 462 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534440 | sp|Q9M394|SCKL1_ARATH | 68.443 | 469 | 135 | 4 | 6 | 468 | 10 | 471 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534440 | A0A072USU3 | 95.726 | 468 | 14 | 1 | 1 | 468 | 1 | 462 | 0.0 | 936 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006390 | Msa0534440 | 0.817368 | 3.419520e-52 | -8.615850e-47 |
| Msa0011720 | Msa0534440 | 0.800473 | 1.417825e-48 | -8.615850e-47 |
| Msa0024680 | Msa0534440 | 0.805814 | 1.112913e-49 | -8.615850e-47 |
| Msa0044710 | Msa0534440 | 0.831855 | 1.317469e-55 | -8.615850e-47 |
| Msa0048020 | Msa0534440 | 0.806285 | 8.858787e-50 | -8.615850e-47 |
| Msa0050720 | Msa0534440 | 0.840063 | 1.089675e-57 | -8.615850e-47 |
| Msa0050770 | Msa0534440 | 0.823956 | 1.047398e-53 | -8.615850e-47 |
| Msa0094100 | Msa0534440 | 0.839434 | 1.588544e-57 | -8.615850e-47 |
| Msa0120330 | Msa0534440 | 0.806935 | 6.458805e-50 | -8.615850e-47 |
| Msa0141430 | Msa0534440 | 0.805101 | 1.570446e-49 | -8.615850e-47 |
| Msa0155110 | Msa0534440 | 0.810534 | 1.099051e-50 | -8.615850e-47 |
| Msa0168100 | Msa0534440 | 0.827851 | 1.245213e-54 | -8.615850e-47 |
| Msa0172350 | Msa0534440 | 0.801872 | 7.334750e-49 | -8.615850e-47 |
| Msa0182930 | Msa0534440 | 0.819886 | 9.176959e-53 | -8.615850e-47 |
| Msa0183620 | Msa0534440 | 0.818188 | 2.233089e-52 | -8.615850e-47 |
| Msa0188680 | Msa0534440 | -0.822808 | 1.942941e-53 | -8.615850e-47 |
| Msa0199730 | Msa0534440 | 0.838550 | 2.690312e-57 | -8.615850e-47 |
| Msa0200950 | Msa0534440 | -0.800471 | 1.419180e-48 | -8.615850e-47 |
| Msa0208630 | Msa0534440 | 0.837359 | 5.446811e-57 | -8.615850e-47 |
| Msa0215320 | Msa0534440 | -0.817813 | 2.713887e-52 | -8.615850e-47 |
| Msa0378080 | Msa0534440 | 0.839639 | 1.404899e-57 | -8.615850e-47 |
| Msa0380040 | Msa0534440 | 0.805599 | 1.234913e-49 | -8.615850e-47 |
| Msa0419990 | Msa0534440 | 0.810876 | 9.269125e-51 | -8.615850e-47 |
| Msa0465970 | Msa0534440 | 0.801604 | 8.323856e-49 | -8.615850e-47 |
| Msa0468160 | Msa0534440 | 0.837646 | 4.597142e-57 | -8.615850e-47 |
| Msa0470180 | Msa0534440 | 0.832314 | 1.014540e-55 | -8.615850e-47 |
| Msa0480320 | Msa0534440 | 0.802847 | 4.619446e-49 | -8.615850e-47 |
| Msa0239660 | Msa0534440 | 0.803807 | 2.922980e-49 | -8.615850e-47 |
| Msa0258760 | Msa0534440 | 0.816794 | 4.602813e-52 | -8.615850e-47 |
| Msa0265820 | Msa0534440 | 0.826019 | 3.413551e-54 | -8.615850e-47 |
| Msa0267760 | Msa0534440 | 0.803461 | 3.447844e-49 | -8.615850e-47 |
| Msa0270220 | Msa0534440 | -0.828168 | 1.044336e-54 | -8.615850e-47 |
| Msa0275030 | Msa0534440 | 0.833713 | 4.551968e-56 | -8.615850e-47 |
| Msa0307830 | Msa0534440 | -0.835790 | 1.366963e-56 | -8.615850e-47 |
| Msa0326670 | Msa0534440 | 0.829618 | 4.654427e-55 | -8.615850e-47 |
| Msa0344830 | Msa0534440 | 0.839825 | 1.256912e-57 | -8.615850e-47 |
| Msa0347360 | Msa0534440 | 0.816960 | 4.223607e-52 | -8.615850e-47 |
| Msa0358170 | Msa0534440 | 0.863650 | 2.140155e-64 | -8.615850e-47 |
| Msa0490350 | Msa0534440 | 0.811924 | 5.487934e-51 | -8.615850e-47 |
| Msa0508200 | Msa0534440 | 0.827903 | 1.209567e-54 | -8.615850e-47 |
| Msa0518040 | Msa0534440 | 0.843416 | 1.420374e-58 | -8.615850e-47 |
| Msa0524890 | Msa0534440 | -0.846295 | 2.375565e-59 | -8.615850e-47 |
| Msa0526710 | Msa0534440 | 0.808310 | 3.297361e-50 | -8.615850e-47 |
| Msa0527600 | Msa0534440 | 0.815700 | 8.083530e-52 | -8.615850e-47 |
| Msa0532300 | Msa0534440 | 0.831312 | 1.792572e-55 | -8.615850e-47 |
| Msa0532330 | Msa0534440 | 0.818147 | 2.280962e-52 | -8.615850e-47 |
| Msa0534440 | Msa0535060 | 0.804753 | 1.856847e-49 | -8.615850e-47 |
| Msa0534440 | Msa0540070 | 0.825447 | 4.664915e-54 | -8.615850e-47 |
| Msa0534440 | Msa0553220 | -0.815499 | 8.961156e-52 | -8.615850e-47 |
| Msa0534440 | Msa0579290 | 0.861360 | 1.083539e-63 | -8.615850e-47 |
| Msa0534440 | Msa0579390 | 0.864164 | 1.480862e-64 | -8.615850e-47 |
| Msa0534440 | Msa0583790 | 0.800481 | 1.412308e-48 | -8.615850e-47 |
| Msa0534440 | Msa0591060 | 0.810216 | 1.286955e-50 | -8.615850e-47 |
| Msa0534440 | Msa0591770 | 0.814755 | 1.310661e-51 | -8.615850e-47 |
| Msa0534440 | Msa0607200 | 0.819820 | 9.499315e-53 | -8.615850e-47 |
| Msa0534440 | Msa0629370 | 0.826613 | 2.464887e-54 | -8.615850e-47 |
| Msa0534440 | Msa0638280 | 0.836853 | 7.334618e-57 | -8.615850e-47 |
| Msa0534440 | Msa0638320 | 0.834432 | 3.008079e-56 | -8.615850e-47 |
| Msa0534440 | Msa0647450 | -0.817423 | 3.323751e-52 | -8.615850e-47 |
| Msa0534440 | Msa0669850 | 0.802639 | 5.100174e-49 | -8.615850e-47 |
| Msa0534440 | Msa0677270 | 0.826202 | 3.087279e-54 | -8.615850e-47 |
| Msa0534440 | Msa0701030 | 0.813586 | 2.374664e-51 | -8.615850e-47 |
| Msa0534440 | Msa0753790 | 0.806161 | 9.410431e-50 | -8.615850e-47 |
| Msa0534440 | Msa0756630 | -0.801069 | 1.071339e-48 | -8.615850e-47 |
| Msa0534440 | Msa0775260 | 0.821334 | 4.267592e-53 | -8.615850e-47 |
| Msa0534440 | Msa0790390 | -0.819034 | 1.435616e-52 | -8.615850e-47 |
| Msa0534440 | Msa0812990 | 0.800340 | 1.509227e-48 | -8.615850e-47 |
| Msa0534440 | Msa0847200 | 0.808464 | 3.057079e-50 | -8.615850e-47 |
| Msa0534440 | Msa0848360 | 0.806045 | 9.953691e-50 | -8.615850e-47 |
| Msa0534440 | Msa0853170 | 0.824248 | 8.944235e-54 | -8.615850e-47 |
| Msa0534440 | Msa0853540 | 0.843359 | 1.470689e-58 | -8.615850e-47 |
| Msa0534440 | Msa0872660 | 0.816076 | 6.662810e-52 | -8.615850e-47 |
| Msa0534440 | Msa0874760 | 0.811391 | 7.168189e-51 | -8.615850e-47 |
| Msa0534440 | Msa0909710 | 0.808732 | 2.679616e-50 | -8.615850e-47 |
| Msa0534440 | Msa0910400 | 0.824685 | 7.058926e-54 | -8.615850e-47 |
| Msa0534440 | Msa0932780 | -0.812289 | 4.568501e-51 | -8.615850e-47 |
| Msa0534440 | Msa0937940 | 0.810507 | 1.113730e-50 | -8.615850e-47 |
| Msa0534440 | Msa0969570 | 0.803224 | 3.861226e-49 | -8.615850e-47 |
| Msa0534440 | Msa0992490 | -0.822240 | 2.633309e-53 | -8.615850e-47 |
| Msa0534440 | Msa1000940 | 0.811556 | 6.600397e-51 | -8.615850e-47 |
| Msa0534440 | Msa1004210 | 0.809126 | 2.207766e-50 | -8.615850e-47 |
| Msa0534440 | Msa1026760 | 0.804373 | 2.228623e-49 | -8.615850e-47 |
| Msa0534440 | Msa1026790 | 0.800771 | 1.232837e-48 | -8.615850e-47 |
| Msa0534440 | Msa1034360 | 0.805596 | 1.236788e-49 | -8.615850e-47 |
| Msa0534440 | Msa1036390 | 0.816240 | 6.122430e-52 | -8.615850e-47 |
| Msa0534440 | Msa1046610 | 0.809798 | 1.583650e-50 | -8.615850e-47 |
| Msa0534440 | Msa1074060 | 0.812750 | 3.622458e-51 | -8.615850e-47 |
| Msa0534440 | Msa1076680 | 0.806020 | 1.007610e-49 | -8.615850e-47 |
| Msa0534440 | Msa1095480 | 0.810731 | 9.962130e-51 | -8.615850e-47 |
| Msa0534440 | Msa1178160 | 0.803257 | 3.800550e-49 | -8.615850e-47 |
| Msa0534440 | Msa1184730 | 0.806200 | 9.231130e-50 | -8.615850e-47 |
| Msa0534440 | Msa1199220 | 0.817869 | 2.636929e-52 | -8.615850e-47 |
| Msa0534440 | Msa1206020 | 0.822934 | 1.815692e-53 | -8.615850e-47 |
| Msa0534440 | Msa1217860 | 0.803932 | 2.753636e-49 | -8.615850e-47 |
| Msa0534440 | Msa1261250 | 0.828775 | 7.451502e-55 | -8.615850e-47 |
| Msa0534440 | Msa1265960 | 0.810043 | 1.402195e-50 | -8.615850e-47 |
| Msa0534440 | Msa1280130 | 0.842303 | 2.807425e-58 | -8.615850e-47 |
| Msa0534440 | Msa1300350 | -0.802748 | 4.843276e-49 | -8.615850e-47 |
| Msa0534440 | Msa1328850 | 0.810500 | 1.117869e-50 | -8.615850e-47 |
| Msa0534440 | Msa1335860 | 0.806277 | 8.892420e-50 | -8.615850e-47 |
| Msa0534440 | Msa1337090 | 0.801498 | 8.753815e-49 | -8.615850e-47 |
| Msa0534440 | Msa1348950 | 0.802593 | 5.210977e-49 | -8.615850e-47 |
| Msa0534440 | Msa1353340 | 0.813514 | 2.463512e-51 | -8.615850e-47 |
| Msa0534440 | Msa1359650 | -0.805293 | 1.431557e-49 | -8.615850e-47 |
| Msa0534440 | Msa1362510 | 0.812300 | 4.543397e-51 | -8.615850e-47 |
| Msa0534440 | Msa1369530 | 0.827709 | 1.346552e-54 | -8.615850e-47 |
| Msa0534440 | Msa1403580 | -0.825572 | 4.356690e-54 | -8.615850e-47 |
| Msa0534440 | Msa1411070 | 0.822526 | 2.259431e-53 | -8.615850e-47 |
| Msa0534440 | Msa1427830 | 0.830643 | 2.615664e-55 | -8.615850e-47 |
| Msa0534440 | Msa1431000 | 0.804968 | 1.674480e-49 | -8.615850e-47 |
| Msa0534440 | Msa1440610 | 0.845880 | 3.081643e-59 | -8.615850e-47 |
| Msa0534440 | Msa1443290 | -0.839661 | 1.386474e-57 | -8.615850e-47 |
| Msa0534440 | Msa1447230 | 0.809189 | 2.139797e-50 | -8.615850e-47 |
| Msa0534440 | Msa1454110 | 0.822463 | 2.337807e-53 | -8.615850e-47 |
| Msa0534440 | Msa1461250 | -0.834355 | 3.144216e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534440 | MtrunA17_Chr4g0008441 | 95.726 | 468 | 14 | 1 | 1 | 468 | 1 | 462 | 0.0 | 936 |
| Msa0534440 | MtrunA17_Chr5g0419371 | 43.766 | 393 | 191 | 5 | 84 | 463 | 185 | 560 | 7.50e-112 | 342 |
| Msa0534440 | MtrunA17_Chr2g0329451 | 33.696 | 368 | 195 | 6 | 92 | 458 | 7 | 326 | 3.02e-55 | 187 |
| Msa0534440 | MtrunA17_Chr5g0434971 | 33.889 | 360 | 192 | 5 | 98 | 457 | 66 | 379 | 5.25e-53 | 182 |
| Msa0534440 | MtrunA17_Chr4g0033631 | 32.880 | 368 | 198 | 7 | 92 | 458 | 8 | 327 | 1.63e-51 | 177 |
| Msa0534440 | MtrunA17_Chr1g0188291 | 32.410 | 361 | 197 | 5 | 98 | 458 | 7 | 320 | 5.18e-51 | 176 |
| Msa0534440 | MtrunA17_Chr6g0474331 | 31.608 | 367 | 205 | 7 | 99 | 464 | 28 | 349 | 3.03e-48 | 169 |
| Msa0534440 | MtrunA17_Chr1g0204101 | 31.436 | 369 | 208 | 6 | 87 | 455 | 11 | 334 | 3.25e-48 | 169 |
| Msa0534440 | MtrunA17_Chr1g0171921 | 30.476 | 315 | 186 | 5 | 141 | 452 | 206 | 490 | 7.59e-34 | 133 |
| Msa0534440 | MtrunA17_Chr1g0183661 | 27.385 | 325 | 191 | 9 | 137 | 460 | 12 | 292 | 1.60e-27 | 111 |
| Msa0534440 | MtrunA17_Chr1g0183241 | 28.763 | 299 | 181 | 5 | 157 | 455 | 134 | 400 | 2.81e-27 | 113 |
| Msa0534440 | MtrunA17_Chr1g0177771 | 28.205 | 312 | 184 | 5 | 141 | 452 | 276 | 547 | 4.97e-27 | 114 |
| Msa0534440 | MtrunA17_Chr1g0177321 | 27.358 | 318 | 170 | 6 | 141 | 452 | 202 | 464 | 8.89e-25 | 106 |
| Msa0534440 | MtrunA17_Chr7g0246421 | 30.137 | 219 | 121 | 3 | 238 | 455 | 2 | 189 | 3.09e-22 | 94.4 |
| Msa0534440 | MtrunA17_Chr7g0246411 | 30.822 | 146 | 86 | 3 | 98 | 242 | 40 | 171 | 4.83e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534440 | AT3G54090.1 | 68.443 | 469 | 135 | 4 | 6 | 468 | 10 | 471 | 0.0 | 681 |
| Msa0534440 | AT1G69200.1 | 43.767 | 361 | 190 | 3 | 90 | 450 | 197 | 544 | 2.51e-103 | 321 |
| Msa0534440 | AT3G59480.1 | 33.609 | 363 | 188 | 5 | 99 | 458 | 10 | 322 | 8.97e-56 | 189 |
| Msa0534440 | AT2G31390.1 | 32.249 | 369 | 197 | 5 | 96 | 461 | 6 | 324 | 1.70e-55 | 188 |
| Msa0534440 | AT1G06030.1 | 34.417 | 369 | 194 | 7 | 95 | 462 | 7 | 328 | 4.11e-54 | 184 |
| Msa0534440 | AT1G06020.1 | 33.516 | 364 | 194 | 6 | 99 | 461 | 10 | 326 | 5.08e-54 | 184 |
| Msa0534440 | AT1G66430.1 | 31.850 | 427 | 219 | 10 | 33 | 456 | 19 | 376 | 2.33e-53 | 184 |
| Msa0534440 | AT4G10260.1 | 32.410 | 361 | 197 | 5 | 98 | 458 | 5 | 318 | 8.96e-48 | 167 |
| Msa0534440 | AT5G51830.2 | 31.593 | 364 | 204 | 6 | 95 | 458 | 19 | 337 | 4.93e-47 | 166 |
| Msa0534440 | AT5G51830.1 | 31.593 | 364 | 204 | 6 | 95 | 458 | 19 | 337 | 4.93e-47 | 166 |
Find 144 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTCTTCAAACATTTC+TGG | 0.137316 | 4_1:-9888815 | None:intergenic |
| TATACAAAACTTGTTTAATT+TGG | 0.158941 | 4_1:+9889126 | Msa0534440:three_prime_UTR |
| ATCCAAACCACCTAATAAAA+TGG | 0.159213 | 4_1:-9885895 | None:intergenic |
| TCTTTATGGGTTTGGATTAA+TGG | 0.170510 | 4_1:-9885978 | None:intergenic |
| TTCCATTCTGTGTATATATC+TGG | 0.195178 | 4_1:-9886366 | None:intergenic |
| AATTGAGGAGGACATCTTTA+TGG | 0.196538 | 4_1:-9885992 | None:intergenic |
| GTTTATTATGTATCCTTTCT+AGG | 0.205801 | 4_1:+9889053 | Msa0534440:three_prime_UTR |
| GTTTGGGGAGGAGATGGTTT+TGG | 0.244152 | 4_1:+9886512 | Msa0534440:CDS |
| CGGCTTTGTTGGGGAAAGTT+GGG | 0.250094 | 4_1:+9886481 | Msa0534440:CDS |
| GTTTGATGATGATGGGAAAA+TGG | 0.251501 | 4_1:+9886617 | Msa0534440:CDS |
| GTAATACTCTTGACGATTCT+TGG | 0.268512 | 4_1:-9888579 | None:intergenic |
| TGATTTAGAAAGGGTTGTTT+TGG | 0.268906 | 4_1:-9886082 | None:intergenic |
| GTTTGAAGACCAAGATGTTT+TGG | 0.272200 | 4_1:+9888823 | Msa0534440:CDS |
| CACAAGGCCGCCAAACTTCT+TGG | 0.273975 | 4_1:-9888363 | None:intergenic |
| GGCGGACGGGCGGCTTTGTT+GGG | 0.275857 | 4_1:+9886471 | Msa0534440:CDS |
| TGGCGGACGGGCGGCTTTGT+TGG | 0.280211 | 4_1:+9886470 | Msa0534440:CDS |
| AAAGTTGGGGAAGATGAGTT+TGG | 0.286600 | 4_1:+9886495 | Msa0534440:CDS |
| GTTTCTGTTGTGGAAGCTTT+AGG | 0.294571 | 4_1:-9886138 | None:intergenic |
| TGAAGTTTGATTCGGGGTTT+CGG | 0.299143 | 4_1:+9886568 | Msa0534440:CDS |
| GAGGAAGAAGGAGAAGATTA+TGG | 0.320107 | 4_1:-9886023 | None:intergenic |
| CCGGAGTTCGCGCGAGCGCC+AGG | 0.321958 | 4_1:+9886408 | Msa0534440:CDS |
| AACAGAGATGATTCCATAGA+AGG | 0.335112 | 4_1:-9888323 | None:intergenic |
| GGAGGACATCTTTATGGGTT+TGG | 0.335197 | 4_1:-9885986 | None:intergenic |
| AGTTCTAACATCCCCTTCTA+TGG | 0.340037 | 4_1:+9888310 | Msa0534440:CDS |
| TTTGATTCGGGGTTTCGGAC+TGG | 0.341928 | 4_1:+9886573 | Msa0534440:CDS |
| TGGACTATTGGTGGAGTTAG+AGG | 0.347631 | 4_1:+9888890 | Msa0534440:CDS |
| ATTGAGGAGGACATCTTTAT+GGG | 0.352502 | 4_1:-9885991 | None:intergenic |
| GCGGCTTTGTTGGGGAAAGT+TGG | 0.356462 | 4_1:+9886480 | Msa0534440:CDS |
| TTAGAACTTCTGAATTGAAA+TGG | 0.361898 | 4_1:-9888295 | None:intergenic |
| AAGTTGGGGAAGATGAGTTT+GGG | 0.364967 | 4_1:+9886496 | Msa0534440:CDS |
| TTGATTCGGGGTTTCGGACT+GGG | 0.367275 | 4_1:+9886574 | Msa0534440:CDS |
| AGTAACAGTTTCATCTCAAA+TGG | 0.372771 | 4_1:+9889076 | Msa0534440:three_prime_UTR |
| CCACCGTTAGTATGTTGTTT+CGG | 0.375127 | 4_1:+9886288 | Msa0534440:CDS |
| CCAGTTCTATCGCAAGTATA+AGG | 0.379857 | 4_1:-9888743 | None:intergenic |
| AGAGGGGTGAAGTTTGATTC+GGG | 0.383749 | 4_1:+9886561 | Msa0534440:CDS |
| CCATGTCAGGCTTGGCGGAC+GGG | 0.385073 | 4_1:+9886458 | Msa0534440:CDS |
| ATTATATCGCAATGGACTAT+TGG | 0.392117 | 4_1:+9888878 | Msa0534440:CDS |
| CTTGGTTTGTTCGTAATCTT+CGG | 0.392437 | 4_1:-9888561 | None:intergenic |
| TTTGATGATGATGGGAAAAT+GGG | 0.397363 | 4_1:+9886618 | Msa0534440:CDS |
| AGATTTCCTCGGCAGTATAA+TGG | 0.407010 | 4_1:-9888601 | None:intergenic |
| CAGATTCTGAGTAGCACTTT+CGG | 0.411608 | 4_1:-9888921 | None:intergenic |
| TGTGTAAGAAACAAATGCTA+TGG | 0.421466 | 4_1:-9885936 | None:intergenic |
| AGATGAGTTTGGGGAGGAGA+TGG | 0.422134 | 4_1:+9886506 | Msa0534440:CDS |
| ATAAAGTGGTCCAAGAAGTT+TGG | 0.422946 | 4_1:+9888353 | Msa0534440:CDS |
| AGTCCATTGCGATATAATTC+CGG | 0.424032 | 4_1:-9888873 | None:intergenic |
| ATGTGGCGGTGGCCCATGTC+AGG | 0.426234 | 4_1:+9886445 | Msa0534440:CDS |
| TAGAGGGGTGAAGTTTGATT+CGG | 0.426457 | 4_1:+9886560 | Msa0534440:CDS |
| CACAACACAAGAACAAGAAC+AGG | 0.429199 | 4_1:+9886215 | Msa0534440:CDS |
| TTGTTGTGTTTGATTTAGAA+AGG | 0.431452 | 4_1:-9886092 | None:intergenic |
| GGCTTTGTTGGGGAAAGTTG+GGG | 0.436289 | 4_1:+9886482 | Msa0534440:CDS |
| TCTCCCTACGGTGCGTGTGC+AGG | 0.439194 | 4_1:+9886329 | Msa0534440:CDS |
| CCCGTCCGCCAAGCCTGACA+TGG | 0.441638 | 4_1:-9886458 | None:intergenic |
| GAGTTCGCGCGAGCGCCAGG+TGG | 0.447733 | 4_1:+9886411 | Msa0534440:CDS |
| GAAGGAGAAGATTATGGTGA+TGG | 0.451108 | 4_1:-9886017 | None:intergenic |
| ACATTCGACGGTGGCCCACC+TGG | 0.459108 | 4_1:-9886426 | None:intergenic |
| CGTGATCTCCACAGAGGTAA+TGG | 0.461462 | 4_1:-9888404 | None:intergenic |
| TGTGTATATATCTGGGTCCA+TGG | 0.465474 | 4_1:-9886358 | None:intergenic |
| TCCATTCTGTGTATATATCT+GGG | 0.467221 | 4_1:-9886365 | None:intergenic |
| CCCATGTCAGGCTTGGCGGA+CGG | 0.474766 | 4_1:+9886457 | Msa0534440:CDS |
| TCTCGTAATGTTCTTCGTCT+AGG | 0.475130 | 4_1:-9888508 | None:intergenic |
| TCCAAACCACCTAATAAAAT+GGG | 0.476445 | 4_1:-9885894 | None:intergenic |
| AATGGGGATGGAGATTGTTA+AGG | 0.478701 | 4_1:+9886635 | Msa0534440:CDS |
| CCTTATACTTGCGATAGAAC+TGG | 0.478733 | 4_1:+9888743 | Msa0534440:CDS |
| TTGTTCCATCGGTCACAAAC+AGG | 0.479482 | 4_1:-9888652 | None:intergenic |
| TGGCTCTGGTGATGCTATTG+TGG | 0.484324 | 4_1:+9888763 | Msa0534440:CDS |
| CCTGGCGCTCGCGCGAACTC+CGG | 0.484739 | 4_1:-9886408 | None:intergenic |
| TAATCTTCGGCGTAGTATTG+TGG | 0.488189 | 4_1:-9888548 | None:intergenic |
| ACTAACGGTGGGTCATCGTA+TGG | 0.490169 | 4_1:-9886276 | None:intergenic |
| ACCACAACCCCGTCAAAAGA+AGG | 0.492807 | 4_1:-9888695 | None:intergenic |
| GCGGTGGCCCATGTCAGGCT+TGG | 0.495812 | 4_1:+9886450 | Msa0534440:CDS |
| GTGTAAGAAACAAATGCTAT+GGG | 0.499329 | 4_1:-9885935 | None:intergenic |
| GCGGACGGGCGGCTTTGTTG+GGG | 0.501888 | 4_1:+9886472 | Msa0534440:CDS |
| GAGAGTGAAAGAGAGGAAGA+AGG | 0.503303 | 4_1:-9886035 | None:intergenic |
| ATCTCGCCGTTGTGGCATGA+TGG | 0.507271 | 4_1:+9888620 | Msa0534440:CDS |
| CTACGTTTCGCTATTGCAGC+CGG | 0.509386 | 4_1:+9888854 | Msa0534440:CDS |
| TATGGGTTTGGATTAATGGA+AGG | 0.510517 | 4_1:-9885974 | None:intergenic |
| AAGTTCCTGTTTGTGACCGA+TGG | 0.511223 | 4_1:+9888647 | Msa0534440:CDS |
| TTGGGATTGTGTTTCTGTTG+TGG | 0.512671 | 4_1:-9886148 | None:intergenic |
| GCCACCGTCGAATGTGGCGG+TGG | 0.514160 | 4_1:+9886434 | Msa0534440:CDS |
| AGGAGAAGGTGCAGACTAGA+GGG | 0.514816 | 4_1:+9886544 | Msa0534440:CDS |
| ACAGAGATGATTCCATAGAA+GGG | 0.520711 | 4_1:-9888322 | None:intergenic |
| ATGGGTTTGGATTAATGGAA+GGG | 0.522357 | 4_1:-9885973 | None:intergenic |
| AATGTGCTGAGGATTCTCTT+AGG | 0.525056 | 4_1:+9886658 | Msa0534440:CDS |
| GTGGCCCATGTCAGGCTTGG+CGG | 0.526291 | 4_1:+9886453 | Msa0534440:CDS |
| TGAAACTGTTACTCCTAGAA+AGG | 0.528325 | 4_1:-9889066 | None:intergenic |
| CTCTGTTCAAAGCAATAAAG+TGG | 0.530790 | 4_1:+9888339 | Msa0534440:CDS |
| GGCGCTCGCGCGAACTCCGG+CGG | 0.534032 | 4_1:-9886405 | None:intergenic |
| GTGAATTCTAATTGTTCCAT+CGG | 0.536542 | 4_1:-9888663 | None:intergenic |
| GCTGTCTCTCCAAAACATCT+TGG | 0.538601 | 4_1:-9888832 | None:intergenic |
| CCACAACCCCGTCAAAAGAA+GGG | 0.552175 | 4_1:-9888694 | None:intergenic |
| TGGGCCACCGCCACATTCGA+CGG | 0.552755 | 4_1:-9886438 | None:intergenic |
| AGGTGGGCCACCGTCGAATG+TGG | 0.554311 | 4_1:+9886428 | Msa0534440:CDS |
| TGATGATGGGAAAATGGGGA+TGG | 0.554842 | 4_1:+9886623 | Msa0534440:CDS |
| ACCCAGATATATACACAGAA+TGG | 0.556834 | 4_1:+9886364 | Msa0534440:CDS |
| AAGGTGAAGTTTGATGATGA+TGG | 0.557714 | 4_1:+9886609 | Msa0534440:CDS |
| GACTGGGTGTAGTTATATGA+AGG | 0.559654 | 4_1:+9886590 | Msa0534440:CDS |
| ATATCGCAATGGACTATTGG+TGG | 0.560224 | 4_1:+9888881 | Msa0534440:CDS |
| GAGAAATAATCAAGAAAGCA+TGG | 0.560433 | 4_1:+9888438 | Msa0534440:CDS |
| GCGTGTGCAGGAGTTTCCCA+TGG | 0.560604 | 4_1:+9886341 | Msa0534440:CDS |
| AGTTCGCGCGAGCGCCAGGT+GGG | 0.566606 | 4_1:+9886412 | Msa0534440:CDS |
| AAGTGGTCCAAGAAGTTTGG+CGG | 0.570685 | 4_1:+9888356 | Msa0534440:CDS |
| GTAACAGTTTCATCTCAAAT+GGG | 0.571566 | 4_1:+9889077 | Msa0534440:three_prime_UTR |
| GTGTATATATCTGGGTCCAT+GGG | 0.573279 | 4_1:-9886357 | None:intergenic |
| AACTCCTGCACACGCACCGT+AGG | 0.573419 | 4_1:-9886333 | None:intergenic |
| TGTTGTGTTTGATTTAGAAA+GGG | 0.573764 | 4_1:-9886091 | None:intergenic |
| CGTAATGTTCTTCGTCTAGG+AGG | 0.574410 | 4_1:-9888505 | None:intergenic |
| TTGTTTCGGAGCAGCACAGA+AGG | 0.578654 | 4_1:+9886302 | Msa0534440:CDS |
| CCGAGGAAATCTCGCCGTTG+TGG | 0.579091 | 4_1:+9888612 | Msa0534440:CDS |
| ACTTGCGATAGAACTGGCTC+TGG | 0.580431 | 4_1:+9888749 | Msa0534440:CDS |
| CCGTCCGCCAAGCCTGACAT+GGG | 0.580898 | 4_1:-9886457 | None:intergenic |
| TGGGGAAGATGAGTTTGGGG+AGG | 0.581376 | 4_1:+9886500 | Msa0534440:CDS |
| CTAACGGTGGGTCATCGTAT+GGG | 0.581904 | 4_1:-9886275 | None:intergenic |
| AAGGAGAAGGTGCAGACTAG+AGG | 0.583488 | 4_1:+9886543 | Msa0534440:CDS |
| CCACAACGGCGAGATTTCCT+CGG | 0.585667 | 4_1:-9888612 | None:intergenic |
| TGTCAGGCTTGGCGGACGGG+CGG | 0.592628 | 4_1:+9886461 | Msa0534440:CDS |
| TTTGGGGATGAATAAGGAGA+AGG | 0.593535 | 4_1:+9886530 | Msa0534440:CDS |
| ATGGTGATGGAGAATTGAGG+AGG | 0.599588 | 4_1:-9886004 | None:intergenic |
| GAGGGGTGAAGTTTGATTCG+GGG | 0.600416 | 4_1:+9886562 | Msa0534440:CDS |
| CAGAGATGATTCCATAGAAG+GGG | 0.604106 | 4_1:-9888321 | None:intergenic |
| AGGTGAAGTTTGATGATGAT+GGG | 0.604130 | 4_1:+9886610 | Msa0534440:CDS |
| ACTCCTGCACACGCACCGTA+GGG | 0.604979 | 4_1:-9886332 | None:intergenic |
| ATTATGGTGATGGAGAATTG+AGG | 0.608638 | 4_1:-9886007 | None:intergenic |
| TGGGCCACCGTCGAATGTGG+CGG | 0.611823 | 4_1:+9886431 | Msa0534440:CDS |
| GATGTTACAATGGAAGCCGC+CGG | 0.615125 | 4_1:+9886389 | Msa0534440:CDS |
| CACAACCCCGTCAAAAGAAG+GGG | 0.616084 | 4_1:-9888693 | None:intergenic |
| ACAGAAGGAGTTTCTCCCTA+CGG | 0.619088 | 4_1:+9886317 | Msa0534440:CDS |
| CAGCCGGAATTATATCGCAA+TGG | 0.626399 | 4_1:+9888870 | Msa0534440:CDS |
| TAAACTTGCCATTACCTCTG+TGG | 0.629177 | 4_1:+9888396 | Msa0534440:CDS |
| GCTCCGAAACAACATACTAA+CGG | 0.632899 | 4_1:-9886291 | None:intergenic |
| GAATTCGAAGATTACGATGA+CGG | 0.636113 | 4_1:+9886243 | Msa0534440:CDS |
| CGAAACAACATACTAACGGT+GGG | 0.640061 | 4_1:-9886287 | None:intergenic |
| CAGAATGGAAGATGTTACAA+TGG | 0.641345 | 4_1:+9886379 | Msa0534440:CDS |
| TTCTGAGTAGCACTTTCGGT+AGG | 0.642730 | 4_1:-9888917 | None:intergenic |
| GTATTACCATTATACTGCCG+AGG | 0.642912 | 4_1:+9888595 | Msa0534440:CDS |
| CCGAAACAACATACTAACGG+TGG | 0.643534 | 4_1:-9886288 | None:intergenic |
| TTGATGATGATGGGAAAATG+GGG | 0.652786 | 4_1:+9886619 | Msa0534440:CDS |
| AGTTGGGGAAGATGAGTTTG+GGG | 0.660506 | 4_1:+9886497 | Msa0534440:CDS |
| GCCACCGCCACATTCGACGG+TGG | 0.668024 | 4_1:-9886435 | None:intergenic |
| GGAGAAGGTGCAGACTAGAG+GGG | 0.677795 | 4_1:+9886545 | Msa0534440:CDS |
| GATTGTTAAGGAATGTGCTG+AGG | 0.682184 | 4_1:+9886647 | Msa0534440:CDS |
| AAGTTTATGTACCTTCAATG+TGG | 0.696809 | 4_1:+9888951 | Msa0534440:CDS |
| TAGACGAAGAACATTACGAG+AGG | 0.701140 | 4_1:+9888510 | Msa0534440:CDS |
| TTAAGTCCATCATGCCACAA+CGG | 0.714565 | 4_1:-9888626 | None:intergenic |
| TCGTCGCGTGATCTCCACAG+AGG | 0.787222 | 4_1:-9888410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTATACAATCTTAAAATTT+TGG | - | chr4_1:9886903-9886922 | None:intergenic | 15.0% |
| !!! | TGTCATCTTATTTATTTTTT+AGG | + | chr4_1:9887321-9887340 | Msa0534440:intron | 15.0% |
| !! | ATAAGCTTATATATCATATA+AGG | - | chr4_1:9887348-9887367 | None:intergenic | 15.0% |
| !!! | ATATTTTGGCTTTTATATTT+TGG | + | chr4_1:9888141-9888160 | Msa0534440:intron | 15.0% |
| !!! | TATACAAAACTTGTTTAATT+TGG | + | chr4_1:9889126-9889145 | Msa0534440:three_prime_UTR | 15.0% |
| !! | TAAAAATAAGCAAATAGAAG+TGG | - | chr4_1:9886769-9886788 | None:intergenic | 20.0% |
| !! | TCTTAAAATGTGTTTATAAG+TGG | + | chr4_1:9887036-9887055 | Msa0534440:intron | 20.0% |
| !! | CTTAAAATGTGTTTATAAGT+GGG | + | chr4_1:9887037-9887056 | Msa0534440:intron | 20.0% |
| !! | TTACTATTCATAATGAGATT+AGG | + | chr4_1:9887430-9887449 | Msa0534440:intron | 20.0% |
| !!! | TCATGTTTTGTTAATATATG+AGG | + | chr4_1:9887528-9887547 | Msa0534440:intron | 20.0% |
| !!! | TTTCAATGTTTTTACTTTGA+AGG | + | chr4_1:9887684-9887703 | Msa0534440:intron | 20.0% |
| !!! | AATAAAATCAATTTTGGGAT+GGG | - | chr4_1:9888080-9888099 | None:intergenic | 20.0% |
| !!! | GTGTCAATAAAATCAATTTT+GGG | - | chr4_1:9888085-9888104 | None:intergenic | 20.0% |
| !!! | AGTGTCAATAAAATCAATTT+TGG | - | chr4_1:9888086-9888105 | None:intergenic | 20.0% |
| !!! | ATTTTAGGGTCAAAATATTT+TGG | + | chr4_1:9888127-9888146 | Msa0534440:intron | 20.0% |
| !!! | TAATAGTTTGTTAATGTATG+AGG | + | chr4_1:9888200-9888219 | Msa0534440:intron | 20.0% |
| !! | TGTTGTGTTTGATTTAGAAA+GGG | - | chr4_1:9886094-9886113 | None:intergenic | 25.0% |
| !! | TTGTTGTGTTTGATTTAGAA+AGG | - | chr4_1:9886095-9886114 | None:intergenic | 25.0% |
| !!! | TTGAAAGAGGTTTGTTTTTT+TGG | + | chr4_1:9886705-9886724 | Msa0534440:intron | 25.0% |
| !!! | TTGTAAAAGTCAGTTTTGTT+GGG | + | chr4_1:9886862-9886881 | Msa0534440:intron | 25.0% |
| !! | TAGGCTTTATCAATATTTCA+CGG | + | chr4_1:9887100-9887119 | Msa0534440:intron | 25.0% |
| ! | ATAAGATGACAAAAGAAAAG+TGG | - | chr4_1:9887312-9887331 | None:intergenic | 25.0% |
| ! | ATGAGATTAGGTTAATGATT+TGG | + | chr4_1:9887442-9887461 | Msa0534440:intron | 25.0% |
| !! | AGGTTAATGATTTGGAAAAT+TGG | + | chr4_1:9887450-9887469 | Msa0534440:intron | 25.0% |
| ! | TTGTTAATATATGAGGAAGA+TGG | + | chr4_1:9887535-9887554 | Msa0534440:intron | 25.0% |
| !!! | AAAATAGCTCTAACATTAGA+TGG | - | chr4_1:9887743-9887762 | None:intergenic | 25.0% |
| !! | TTTTGCAGAATACTAATGTT+TGG | - | chr4_1:9887820-9887839 | None:intergenic | 25.0% |
| ! | AAAAATCATGTATTCACTTG+AGG | + | chr4_1:9887836-9887855 | Msa0534440:intron | 25.0% |
| !! | TGATATTTTGTGATGTCAAA+TGG | + | chr4_1:9887917-9887936 | Msa0534440:intron | 25.0% |
| !! | GATGTCAAATGGTTTTTATA+TGG | + | chr4_1:9887928-9887947 | Msa0534440:intron | 25.0% |
| !!! | CAATAAAATCAATTTTGGGA+TGG | - | chr4_1:9888081-9888100 | None:intergenic | 25.0% |
| !!! | CTTTTATATTTTGGTAGTGA+TGG | + | chr4_1:9888150-9888169 | Msa0534440:intron | 25.0% |
| ! | TTAGAACTTCTGAATTGAAA+TGG | - | chr4_1:9888298-9888317 | None:intergenic | 25.0% |
| ! | AGTTTAAATCGAAAAACACA+AGG | - | chr4_1:9888382-9888401 | None:intergenic | 25.0% |
| !! | AATTTTTATCACCACATTGA+AGG | - | chr4_1:9888965-9888984 | None:intergenic | 25.0% |
| ! | GTTTATTATGTATCCTTTCT+AGG | + | chr4_1:9889053-9889072 | Msa0534440:three_prime_UTR | 25.0% |
| !!! | CAAAAAGCACCCATTTTATT+AGG | + | chr4_1:9885885-9885904 | Msa0534440:five_prime_UTR | 30.0% |
| TCCAAACCACCTAATAAAAT+GGG | - | chr4_1:9885897-9885916 | None:intergenic | 30.0% | |
| ATCCAAACCACCTAATAAAA+TGG | - | chr4_1:9885898-9885917 | None:intergenic | 30.0% | |
| GTGTAAGAAACAAATGCTAT+GGG | - | chr4_1:9885938-9885957 | None:intergenic | 30.0% | |
| TGTGTAAGAAACAAATGCTA+TGG | - | chr4_1:9885939-9885958 | None:intergenic | 30.0% | |
| TCTTTATGGGTTTGGATTAA+TGG | - | chr4_1:9885981-9886000 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTGAGGTTGTTTT+TGG | - | chr4_1:9886060-9886079 | None:intergenic | 30.0% |
| !! | GATTTAGAAAGGGTTGTTTT+GGG | - | chr4_1:9886084-9886103 | None:intergenic | 30.0% |
| ! | TGATTTAGAAAGGGTTGTTT+TGG | - | chr4_1:9886085-9886104 | None:intergenic | 30.0% |
| !!! | TTTTTTGTTGCGTCGTTTTA+AGG | - | chr4_1:9886175-9886194 | None:intergenic | 30.0% |
| TCCATTCTGTGTATATATCT+GGG | - | chr4_1:9886368-9886387 | None:intergenic | 30.0% | |
| TTCCATTCTGTGTATATATC+TGG | - | chr4_1:9886369-9886388 | None:intergenic | 30.0% | |
| !! | TTTGATGATGATGGGAAAAT+GGG | + | chr4_1:9886618-9886637 | Msa0534440:CDS | 30.0% |
| !! | GTTGTAAAAGTCAGTTTTGT+TGG | + | chr4_1:9886861-9886880 | Msa0534440:intron | 30.0% |
| TATCAATATTTCACGGTATG+CGG | + | chr4_1:9887107-9887126 | Msa0534440:intron | 30.0% | |
| ATGAAACGAGATTCATCATA+AGG | - | chr4_1:9887236-9887255 | None:intergenic | 30.0% | |
| TTCACCACTAAAACTTAATG+TGG | + | chr4_1:9887264-9887283 | Msa0534440:intron | 30.0% | |
| !! | CTTACCACATTAAGTTTTAG+TGG | - | chr4_1:9887271-9887290 | None:intergenic | 30.0% |
| GAGAAATAATCAAGAAAGCA+TGG | + | chr4_1:9888438-9888457 | Msa0534440:CDS | 30.0% | |
| GTGAATTCTAATTGTTCCAT+CGG | - | chr4_1:9888666-9888685 | None:intergenic | 30.0% | |
| ! | TATTATACCCCTTCTTTTGA+CGG | + | chr4_1:9888686-9888705 | Msa0534440:CDS | 30.0% |
| !! | ATTATATCGCAATGGACTAT+TGG | + | chr4_1:9888878-9888897 | Msa0534440:CDS | 30.0% |
| AAGTTTATGTACCTTCAATG+TGG | + | chr4_1:9888951-9888970 | Msa0534440:CDS | 30.0% | |
| AGTAACAGTTTCATCTCAAA+TGG | + | chr4_1:9889076-9889095 | Msa0534440:three_prime_UTR | 30.0% | |
| GTAACAGTTTCATCTCAAAT+GGG | + | chr4_1:9889077-9889096 | Msa0534440:three_prime_UTR | 30.0% | |
| !! | TACGCTTCAAAAGTTGTTTT+TGG | - | chr4_1:9889167-9889186 | None:intergenic | 30.0% |
| !!! | AACAACTTTTGAAGCGTAAA+TGG | + | chr4_1:9889169-9889188 | Msa0534440:three_prime_UTR | 30.0% |
| !! | AAAGCACCCATTTTATTAGG+TGG | + | chr4_1:9885888-9885907 | Msa0534440:five_prime_UTR | 35.0% |
| ! | ACCCATTTTATTAGGTGGTT+TGG | + | chr4_1:9885893-9885912 | Msa0534440:five_prime_UTR | 35.0% |
| ATGGGTTTGGATTAATGGAA+GGG | - | chr4_1:9885976-9885995 | None:intergenic | 35.0% | |
| TATGGGTTTGGATTAATGGA+AGG | - | chr4_1:9885977-9885996 | None:intergenic | 35.0% | |
| ATTGAGGAGGACATCTTTAT+GGG | - | chr4_1:9885994-9886013 | None:intergenic | 35.0% | |
| AATTGAGGAGGACATCTTTA+TGG | - | chr4_1:9885995-9886014 | None:intergenic | 35.0% | |
| !! | ATTATGGTGATGGAGAATTG+AGG | - | chr4_1:9886010-9886029 | None:intergenic | 35.0% |
| !!! | TGTTTTGGGTTTTTGAAGTG+AGG | - | chr4_1:9886070-9886089 | None:intergenic | 35.0% |
| !!! | AGTTGTTATGTGTCGTTTTG+AGG | - | chr4_1:9886118-9886137 | None:intergenic | 35.0% |
| GAATTCGAAGATTACGATGA+CGG | + | chr4_1:9886243-9886262 | Msa0534440:CDS | 35.0% | |
| ACCCAGATATATACACAGAA+TGG | + | chr4_1:9886364-9886383 | Msa0534440:CDS | 35.0% | |
| CAGAATGGAAGATGTTACAA+TGG | + | chr4_1:9886379-9886398 | Msa0534440:CDS | 35.0% | |
| !! | AAGGTGAAGTTTGATGATGA+TGG | + | chr4_1:9886609-9886628 | Msa0534440:CDS | 35.0% |
| !! | AGGTGAAGTTTGATGATGAT+GGG | + | chr4_1:9886610-9886629 | Msa0534440:CDS | 35.0% |
| !! | GTTTGATGATGATGGGAAAA+TGG | + | chr4_1:9886617-9886636 | Msa0534440:CDS | 35.0% |
| !! | TTGATGATGATGGGAAAATG+GGG | + | chr4_1:9886619-9886638 | Msa0534440:CDS | 35.0% |
| !!! | GAATCTTGCTGTTTTGAAAG+AGG | + | chr4_1:9886692-9886711 | Msa0534440:CDS | 35.0% |
| !! | CAAAACTGACTTTTACAACG+AGG | - | chr4_1:9886860-9886879 | None:intergenic | 35.0% |
| !!! | CAGTTTTGTTGGGTTAAGTT+AGG | + | chr4_1:9886872-9886891 | Msa0534440:intron | 35.0% |
| AGTCTATTCTAGATACATCG+AGG | + | chr4_1:9886922-9886941 | Msa0534440:intron | 35.0% | |
| TTCTAGATACATCGAGGTAT+TGG | + | chr4_1:9886928-9886947 | Msa0534440:intron | 35.0% | |
| CTACCAAATCTGCTTGTAAA+GGG | - | chr4_1:9887073-9887092 | None:intergenic | 35.0% | |
| ATCAATATTTCACGGTATGC+GGG | + | chr4_1:9887108-9887127 | Msa0534440:intron | 35.0% | |
| TGTGATTCACAATTCGTATC+TGG | + | chr4_1:9887476-9887495 | Msa0534440:intron | 35.0% | |
| TCAAACATTCTCCCTAACAA+AGG | - | chr4_1:9887566-9887585 | None:intergenic | 35.0% | |
| TCTGTTAAAGTTGCGTTTGA+AGG | + | chr4_1:9887648-9887667 | Msa0534440:intron | 35.0% | |
| CTGTTAAAGTTGCGTTTGAA+GGG | + | chr4_1:9887649-9887668 | Msa0534440:intron | 35.0% | |
| CATCACTTCATGTCAAATTG+AGG | + | chr4_1:9887766-9887785 | Msa0534440:intron | 35.0% | |
| ! | CAGAGGAAATTTTGTGTGAA+AGG | + | chr4_1:9887791-9887810 | Msa0534440:intron | 35.0% |
| GATTCTGATACATTGCATTG+TGG | + | chr4_1:9887866-9887885 | Msa0534440:intron | 35.0% | |
| ! | TATATGGATTGTGACTGATG+TGG | + | chr4_1:9887944-9887963 | Msa0534440:intron | 35.0% |
| ! | ATGTGGTTTGCAAGATAAGT+TGG | + | chr4_1:9887961-9887980 | Msa0534440:intron | 35.0% |
| TGTAAGTCACATGTAGAGTT+TGG | + | chr4_1:9888016-9888035 | Msa0534440:intron | 35.0% | |
| GTAAGTCACATGTAGAGTTT+GGG | + | chr4_1:9888017-9888036 | Msa0534440:intron | 35.0% | |
| !! | ATTGACACTTCTGAAACCAA+AGG | + | chr4_1:9888097-9888116 | Msa0534440:intron | 35.0% |
| !!! | TTTTTTATGTGTACCACTGC+AGG | + | chr4_1:9888262-9888281 | Msa0534440:intron | 35.0% |
| ACAGAGATGATTCCATAGAA+GGG | - | chr4_1:9888325-9888344 | None:intergenic | 35.0% | |
| AACAGAGATGATTCCATAGA+AGG | - | chr4_1:9888326-9888345 | None:intergenic | 35.0% | |
| CTCTGTTCAAAGCAATAAAG+TGG | + | chr4_1:9888339-9888358 | Msa0534440:CDS | 35.0% | |
| ATAAAGTGGTCCAAGAAGTT+TGG | + | chr4_1:9888353-9888372 | Msa0534440:CDS | 35.0% | |
| !! | CTTGGTTTGTTCGTAATCTT+CGG | - | chr4_1:9888564-9888583 | None:intergenic | 35.0% |
| GTAATACTCTTGACGATTCT+TGG | - | chr4_1:9888582-9888601 | None:intergenic | 35.0% | |
| ! | ATTATACCCCTTCTTTTGAC+GGG | + | chr4_1:9888687-9888706 | Msa0534440:CDS | 35.0% |
| ! | TCTTGGTCTTCAAACATTTC+TGG | - | chr4_1:9888818-9888837 | None:intergenic | 35.0% |
| ! | GTTTGAAGACCAAGATGTTT+TGG | + | chr4_1:9888823-9888842 | Msa0534440:CDS | 35.0% |
| AGTCCATTGCGATATAATTC+CGG | - | chr4_1:9888876-9888895 | None:intergenic | 35.0% | |
| TGAAACTGTTACTCCTAGAA+AGG | - | chr4_1:9889069-9889088 | None:intergenic | 35.0% | |
| !!! | AACTTTTGAAGCGTAAATGG+AGG | + | chr4_1:9889172-9889191 | Msa0534440:three_prime_UTR | 35.0% |
| !!! | ACTTTTGAAGCGTAAATGGA+GGG | + | chr4_1:9889173-9889192 | Msa0534440:three_prime_UTR | 35.0% |
| GAAGGAGAAGATTATGGTGA+TGG | - | chr4_1:9886020-9886039 | None:intergenic | 40.0% | |
| GAGGAAGAAGGAGAAGATTA+TGG | - | chr4_1:9886026-9886045 | None:intergenic | 40.0% | |
| !! | GTTTTTGGAGAGTGAAAGAG+AGG | - | chr4_1:9886045-9886064 | None:intergenic | 40.0% |
| GTTTCTGTTGTGGAAGCTTT+AGG | - | chr4_1:9886141-9886160 | None:intergenic | 40.0% | |
| ! | TTGGGATTGTGTTTCTGTTG+TGG | - | chr4_1:9886151-9886170 | None:intergenic | 40.0% |
| !!! | GTTGCGTCGTTTTAAGGTTT+GGG | - | chr4_1:9886169-9886188 | None:intergenic | 40.0% |
| !!! | TGTTGCGTCGTTTTAAGGTT+TGG | - | chr4_1:9886170-9886189 | None:intergenic | 40.0% |
| !!! | TCTTGTGTTGTGTCGTTTTG+AGG | - | chr4_1:9886207-9886226 | None:intergenic | 40.0% |
| CACAACACAAGAACAAGAAC+AGG | + | chr4_1:9886215-9886234 | Msa0534440:CDS | 40.0% | |
| CGAAACAACATACTAACGGT+GGG | - | chr4_1:9886290-9886309 | None:intergenic | 40.0% | |
| ! | CCACCGTTAGTATGTTGTTT+CGG | + | chr4_1:9886288-9886307 | Msa0534440:CDS | 40.0% |
| GCTCCGAAACAACATACTAA+CGG | - | chr4_1:9886294-9886313 | None:intergenic | 40.0% | |
| GTGTATATATCTGGGTCCAT+GGG | - | chr4_1:9886360-9886379 | None:intergenic | 40.0% | |
| TGTGTATATATCTGGGTCCA+TGG | - | chr4_1:9886361-9886380 | None:intergenic | 40.0% | |
| AAAGTTGGGGAAGATGAGTT+TGG | + | chr4_1:9886495-9886514 | Msa0534440:CDS | 40.0% | |
| AAGTTGGGGAAGATGAGTTT+GGG | + | chr4_1:9886496-9886515 | Msa0534440:CDS | 40.0% | |
| !!! | GATGGTTTTGGGGATGAATA+AGG | + | chr4_1:9886524-9886543 | Msa0534440:CDS | 40.0% |
| TTTGGGGATGAATAAGGAGA+AGG | + | chr4_1:9886530-9886549 | Msa0534440:CDS | 40.0% | |
| TAGAGGGGTGAAGTTTGATT+CGG | + | chr4_1:9886560-9886579 | Msa0534440:CDS | 40.0% | |
| !! | TGAAGTTTGATTCGGGGTTT+CGG | + | chr4_1:9886568-9886587 | Msa0534440:CDS | 40.0% |
| GACTGGGTGTAGTTATATGA+AGG | + | chr4_1:9886590-9886609 | Msa0534440:CDS | 40.0% | |
| AATGGGGATGGAGATTGTTA+AGG | + | chr4_1:9886635-9886654 | Msa0534440:CDS | 40.0% | |
| GATTGTTAAGGAATGTGCTG+AGG | + | chr4_1:9886647-9886666 | Msa0534440:CDS | 40.0% | |
| AATGTGCTGAGGATTCTCTT+AGG | + | chr4_1:9886658-9886677 | Msa0534440:CDS | 40.0% | |
| CAAATCTGCTTGTAAAGGGA+AGG | - | chr4_1:9887069-9887088 | None:intergenic | 40.0% | |
| CTTCCCTTTACAAGCAGATT+TGG | + | chr4_1:9887067-9887086 | Msa0534440:intron | 40.0% | |
| CCTACCAAATCTGCTTGTAA+AGG | - | chr4_1:9887074-9887093 | None:intergenic | 40.0% | |
| ! | CCTTTACAAGCAGATTTGGT+AGG | + | chr4_1:9887071-9887090 | Msa0534440:intron | 40.0% |
| ! | CAGATTTGGTAGGTTGAGTT+AGG | + | chr4_1:9887081-9887100 | Msa0534440:intron | 40.0% |
| AAGATGGTTGTGCCTTTGTT+AGG | + | chr4_1:9887551-9887570 | Msa0534440:intron | 40.0% | |
| AGATGGTTGTGCCTTTGTTA+GGG | + | chr4_1:9887552-9887571 | Msa0534440:intron | 40.0% | |
| TTAAAGTTGCGTTTGAAGGG+AGG | + | chr4_1:9887652-9887671 | Msa0534440:intron | 40.0% | |
| CATGTCAAATTGAGGTTCAG+AGG | + | chr4_1:9887774-9887793 | Msa0534440:intron | 40.0% | |
| ! | ACCAAAGGTCACTGCATTTT+AGG | + | chr4_1:9888112-9888131 | Msa0534440:intron | 40.0% |
| ! | CCAAAGGTCACTGCATTTTA+GGG | + | chr4_1:9888113-9888132 | Msa0534440:intron | 40.0% |
| ! | AGTTCTAACATCCCCTTCTA+TGG | + | chr4_1:9888310-9888329 | Msa0534440:CDS | 40.0% |
| CAGAGATGATTCCATAGAAG+GGG | - | chr4_1:9888324-9888343 | None:intergenic | 40.0% | |
| TAAACTTGCCATTACCTCTG+TGG | + | chr4_1:9888396-9888415 | Msa0534440:CDS | 40.0% | |
| TCTCGTAATGTTCTTCGTCT+AGG | - | chr4_1:9888511-9888530 | None:intergenic | 40.0% | |
| TAGACGAAGAACATTACGAG+AGG | + | chr4_1:9888510-9888529 | Msa0534440:CDS | 40.0% | |
| TAATCTTCGGCGTAGTATTG+TGG | - | chr4_1:9888551-9888570 | None:intergenic | 40.0% | |
| GTATTACCATTATACTGCCG+AGG | + | chr4_1:9888595-9888614 | Msa0534440:CDS | 40.0% | |
| AGATTTCCTCGGCAGTATAA+TGG | - | chr4_1:9888604-9888623 | None:intergenic | 40.0% | |
| TTAAGTCCATCATGCCACAA+CGG | - | chr4_1:9888629-9888648 | None:intergenic | 40.0% | |
| ! | TTATACCCCTTCTTTTGACG+GGG | + | chr4_1:9888688-9888707 | Msa0534440:CDS | 40.0% |
| CCAGTTCTATCGCAAGTATA+AGG | - | chr4_1:9888746-9888765 | None:intergenic | 40.0% | |
| CCTTATACTTGCGATAGAAC+TGG | + | chr4_1:9888743-9888762 | Msa0534440:CDS | 40.0% | |
| !! | ATATCGCAATGGACTATTGG+TGG | + | chr4_1:9888881-9888900 | Msa0534440:CDS | 40.0% |
| CAGATTCTGAGTAGCACTTT+CGG | - | chr4_1:9888924-9888943 | None:intergenic | 40.0% | |
| GGAGGACATCTTTATGGGTT+TGG | - | chr4_1:9885989-9886008 | None:intergenic | 45.0% | |
| !! | ATGGTGATGGAGAATTGAGG+AGG | - | chr4_1:9886007-9886026 | None:intergenic | 45.0% |
| GAGAGTGAAAGAGAGGAAGA+AGG | - | chr4_1:9886038-9886057 | None:intergenic | 45.0% | |
| CCGAAACAACATACTAACGG+TGG | - | chr4_1:9886291-9886310 | None:intergenic | 45.0% | |
| ACAGAAGGAGTTTCTCCCTA+CGG | + | chr4_1:9886317-9886336 | Msa0534440:CDS | 45.0% | |
| AGTTGGGGAAGATGAGTTTG+GGG | + | chr4_1:9886497-9886516 | Msa0534440:CDS | 45.0% | |
| ! | TTTGGGGAGGAGATGGTTTT+GGG | + | chr4_1:9886513-9886532 | Msa0534440:CDS | 45.0% |
| AGAGGGGTGAAGTTTGATTC+GGG | + | chr4_1:9886561-9886580 | Msa0534440:CDS | 45.0% | |
| !! | TGATGATGGGAAAATGGGGA+TGG | + | chr4_1:9886623-9886642 | Msa0534440:CDS | 45.0% |
| !! | CATCGAGGTATTGGTCACTT+AGG | + | chr4_1:9886937-9886956 | Msa0534440:intron | 45.0% |
| AAGAAAGGCCATCTGGATTC+TGG | - | chr4_1:9886970-9886989 | None:intergenic | 45.0% | |
| AGAATCCAGATGGCCTTTCT+TGG | + | chr4_1:9886969-9886988 | Msa0534440:intron | 45.0% | |
| ATCTGCTTGTAAAGGGAAGG+AGG | - | chr4_1:9887066-9887085 | None:intergenic | 45.0% | |
| CCCTAAAATGCAGTGACCTT+TGG | - | chr4_1:9888116-9888135 | None:intergenic | 45.0% | |
| AAGTGGTCCAAGAAGTTTGG+CGG | + | chr4_1:9888356-9888375 | Msa0534440:CDS | 45.0% | |
| CGTAATGTTCTTCGTCTAGG+AGG | - | chr4_1:9888508-9888527 | None:intergenic | 45.0% | |
| AAGTTCCTGTTTGTGACCGA+TGG | + | chr4_1:9888647-9888666 | Msa0534440:CDS | 45.0% | |
| TTGTTCCATCGGTCACAAAC+AGG | - | chr4_1:9888655-9888674 | None:intergenic | 45.0% | |
| GCTGTCTCTCCAAAACATCT+TGG | - | chr4_1:9888835-9888854 | None:intergenic | 45.0% | |
| CAGCCGGAATTATATCGCAA+TGG | + | chr4_1:9888870-9888889 | Msa0534440:CDS | 45.0% | |
| TGGACTATTGGTGGAGTTAG+AGG | + | chr4_1:9888890-9888909 | Msa0534440:CDS | 45.0% | |
| TTCTGAGTAGCACTTTCGGT+AGG | - | chr4_1:9888920-9888939 | None:intergenic | 45.0% | |
| CTAACGGTGGGTCATCGTAT+GGG | - | chr4_1:9886278-9886297 | None:intergenic | 50.0% | |
| ACTAACGGTGGGTCATCGTA+TGG | - | chr4_1:9886279-9886298 | None:intergenic | 50.0% | |
| TTGTTTCGGAGCAGCACAGA+AGG | + | chr4_1:9886302-9886321 | Msa0534440:CDS | 50.0% | |
| GATGTTACAATGGAAGCCGC+CGG | + | chr4_1:9886389-9886408 | Msa0534440:CDS | 50.0% | |
| !! | CGGCTTTGTTGGGGAAAGTT+GGG | + | chr4_1:9886481-9886500 | Msa0534440:CDS | 50.0% |
| !! | GGCTTTGTTGGGGAAAGTTG+GGG | + | chr4_1:9886482-9886501 | Msa0534440:CDS | 50.0% |
| AGATGAGTTTGGGGAGGAGA+TGG | + | chr4_1:9886506-9886525 | Msa0534440:CDS | 50.0% | |
| ! | GTTTGGGGAGGAGATGGTTT+TGG | + | chr4_1:9886512-9886531 | Msa0534440:CDS | 50.0% |
| !! | TTGGGGAGGAGATGGTTTTG+GGG | + | chr4_1:9886514-9886533 | Msa0534440:CDS | 50.0% |
| ! | AAGGAGAAGGTGCAGACTAG+AGG | + | chr4_1:9886543-9886562 | Msa0534440:CDS | 50.0% |
| ! | AGGAGAAGGTGCAGACTAGA+GGG | + | chr4_1:9886544-9886563 | Msa0534440:CDS | 50.0% |
| ! | GAGGGGTGAAGTTTGATTCG+GGG | + | chr4_1:9886562-9886581 | Msa0534440:CDS | 50.0% |
| !! | TTTGATTCGGGGTTTCGGAC+TGG | + | chr4_1:9886573-9886592 | Msa0534440:CDS | 50.0% |
| !! | TTGATTCGGGGTTTCGGACT+GGG | + | chr4_1:9886574-9886593 | Msa0534440:CDS | 50.0% |
| AACCCTGTCACAGCCAAGAA+AGG | - | chr4_1:9886985-9887004 | None:intergenic | 50.0% | |
| TATGTGTACCACTGCAGGCT+AGG | + | chr4_1:9888267-9888286 | Msa0534440:intron | 50.0% | |
| TGGAAAATCCTAGCCTGCAG+TGG | - | chr4_1:9888278-9888297 | None:intergenic | 50.0% | |
| CGTGATCTCCACAGAGGTAA+TGG | - | chr4_1:9888407-9888426 | None:intergenic | 50.0% | |
| CACAACCCCGTCAAAAGAAG+GGG | - | chr4_1:9888696-9888715 | None:intergenic | 50.0% | |
| CCACAACCCCGTCAAAAGAA+GGG | - | chr4_1:9888697-9888716 | None:intergenic | 50.0% | |
| ACCACAACCCCGTCAAAAGA+AGG | - | chr4_1:9888698-9888717 | None:intergenic | 50.0% | |
| ! | TCTTTTGACGGGGTTGTGGT+TGG | + | chr4_1:9888698-9888717 | Msa0534440:CDS | 50.0% |
| ! | ACTTGCGATAGAACTGGCTC+TGG | + | chr4_1:9888749-9888768 | Msa0534440:CDS | 50.0% |
| !! | TGGCTCTGGTGATGCTATTG+TGG | + | chr4_1:9888763-9888782 | Msa0534440:CDS | 50.0% |
| CTACGTTTCGCTATTGCAGC+CGG | + | chr4_1:9888854-9888873 | Msa0534440:CDS | 50.0% | |
| !! | GCGGCTTTGTTGGGGAAAGT+TGG | + | chr4_1:9886480-9886499 | Msa0534440:CDS | 55.0% |
| TGGGGAAGATGAGTTTGGGG+AGG | + | chr4_1:9886500-9886519 | Msa0534440:CDS | 55.0% | |
| ! | GGAGAAGGTGCAGACTAGAG+GGG | + | chr4_1:9886545-9886564 | Msa0534440:CDS | 55.0% |
| GTCACGCTCCAGAATCCAGA+TGG | + | chr4_1:9886959-9886978 | Msa0534440:intron | 55.0% | |
| CACAGCCAAGAAAGGCCATC+TGG | - | chr4_1:9886977-9886996 | None:intergenic | 55.0% | |
| TGGCCTTTCTTGGCTGTGAC+AGG | + | chr4_1:9886979-9886998 | Msa0534440:intron | 55.0% | |
| GGCCTTTCTTGGCTGTGACA+GGG | + | chr4_1:9886980-9886999 | Msa0534440:intron | 55.0% | |
| CACAAGGCCGCCAAACTTCT+TGG | - | chr4_1:9888366-9888385 | None:intergenic | 55.0% | |
| CCACAACGGCGAGATTTCCT+CGG | - | chr4_1:9888615-9888634 | None:intergenic | 55.0% | |
| ATCTCGCCGTTGTGGCATGA+TGG | + | chr4_1:9888620-9888639 | Msa0534440:CDS | 55.0% | |
| ! | CCCTTCTTTTGACGGGGTTG+TGG | + | chr4_1:9888694-9888713 | Msa0534440:CDS | 55.0% |
| ACTCCTGCACACGCACCGTA+GGG | - | chr4_1:9886335-9886354 | None:intergenic | 60.0% | |
| AACTCCTGCACACGCACCGT+AGG | - | chr4_1:9886336-9886355 | None:intergenic | 60.0% | |
| GCGTGTGCAGGAGTTTCCCA+TGG | + | chr4_1:9886341-9886360 | Msa0534440:CDS | 60.0% | |
| TCGTCGCGTGATCTCCACAG+AGG | - | chr4_1:9888413-9888432 | None:intergenic | 60.0% | |
| CCGAGGAAATCTCGCCGTTG+TGG | + | chr4_1:9888612-9888631 | Msa0534440:CDS | 60.0% | |
| TCTCCCTACGGTGCGTGTGC+AGG | + | chr4_1:9886329-9886348 | Msa0534440:CDS | 65.0% | |
| ACATTCGACGGTGGCCCACC+TGG | - | chr4_1:9886429-9886448 | None:intergenic | 65.0% | |
| AGGTGGGCCACCGTCGAATG+TGG | + | chr4_1:9886428-9886447 | Msa0534440:CDS | 65.0% | |
| TGGGCCACCGTCGAATGTGG+CGG | + | chr4_1:9886431-9886450 | Msa0534440:CDS | 65.0% | |
| TGGGCCACCGCCACATTCGA+CGG | - | chr4_1:9886441-9886460 | None:intergenic | 65.0% | |
| ATGTGGCGGTGGCCCATGTC+AGG | + | chr4_1:9886445-9886464 | Msa0534440:CDS | 65.0% | |
| GTGGCCCATGTCAGGCTTGG+CGG | + | chr4_1:9886453-9886472 | Msa0534440:CDS | 65.0% | |
| CCGTCCGCCAAGCCTGACAT+GGG | - | chr4_1:9886460-9886479 | None:intergenic | 65.0% | |
| CCCATGTCAGGCTTGGCGGA+CGG | + | chr4_1:9886457-9886476 | Msa0534440:CDS | 65.0% | |
| ! | CCATGTCAGGCTTGGCGGAC+GGG | + | chr4_1:9886458-9886477 | Msa0534440:CDS | 65.0% |
| AGTTCGCGCGAGCGCCAGGT+GGG | + | chr4_1:9886412-9886431 | Msa0534440:CDS | 70.0% | |
| GCCACCGTCGAATGTGGCGG+TGG | + | chr4_1:9886434-9886453 | Msa0534440:CDS | 70.0% | |
| GCCACCGCCACATTCGACGG+TGG | - | chr4_1:9886438-9886457 | None:intergenic | 70.0% | |
| GCGGTGGCCCATGTCAGGCT+TGG | + | chr4_1:9886450-9886469 | Msa0534440:CDS | 70.0% | |
| CCCGTCCGCCAAGCCTGACA+TGG | - | chr4_1:9886461-9886480 | None:intergenic | 70.0% | |
| ! | TGTCAGGCTTGGCGGACGGG+CGG | + | chr4_1:9886461-9886480 | Msa0534440:CDS | 70.0% |
| ! | TGGCGGACGGGCGGCTTTGT+TGG | + | chr4_1:9886470-9886489 | Msa0534440:CDS | 70.0% |
| !! | GGCGGACGGGCGGCTTTGTT+GGG | + | chr4_1:9886471-9886490 | Msa0534440:CDS | 70.0% |
| !! | GCGGACGGGCGGCTTTGTTG+GGG | + | chr4_1:9886472-9886491 | Msa0534440:CDS | 70.0% |
| CCTGGCGCTCGCGCGAACTC+CGG | - | chr4_1:9886411-9886430 | None:intergenic | 75.0% | |
| GAGTTCGCGCGAGCGCCAGG+TGG | + | chr4_1:9886411-9886430 | Msa0534440:CDS | 75.0% | |
| ! | GGCGCTCGCGCGAACTCCGG+CGG | - | chr4_1:9886408-9886427 | None:intergenic | 80.0% |
| ! | CCGGAGTTCGCGCGAGCGCC+AGG | + | chr4_1:9886408-9886427 | Msa0534440:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9885880 | 9889213 | 9885880 | ID=Msa0534440;Name=Msa0534440 |
| chr4_1 | mRNA | 9885880 | 9889213 | 9885880 | ID=Msa0534440-mRNA-1;Parent=Msa0534440;Name=Msa0534440-mRNA-1;_AED=0.01;_eAED=0.01;_QI=120|1|1|1|1|1|2|237|468 |
| chr4_1 | exon | 9885880 | 9886713 | 9885880 | ID=Msa0534440-mRNA-1:exon:3174;Parent=Msa0534440-mRNA-1 |
| chr4_1 | exon | 9888284 | 9889213 | 9888284 | ID=Msa0534440-mRNA-1:exon:3175;Parent=Msa0534440-mRNA-1 |
| chr4_1 | five_prime_UTR | 9885880 | 9885999 | 9885880 | ID=Msa0534440-mRNA-1:five_prime_utr;Parent=Msa0534440-mRNA-1 |
| chr4_1 | CDS | 9886000 | 9886713 | 9886000 | ID=Msa0534440-mRNA-1:cds;Parent=Msa0534440-mRNA-1 |
| chr4_1 | CDS | 9888284 | 9888976 | 9888284 | ID=Msa0534440-mRNA-1:cds;Parent=Msa0534440-mRNA-1 |
| chr4_1 | three_prime_UTR | 9888977 | 9889213 | 9888977 | ID=Msa0534440-mRNA-1:three_prime_utr;Parent=Msa0534440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
