AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0805700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805700 MtrunA17_Chr4g0004471 96.867 383 12 0 1 383 176 558 0.0 758
Msa0805700 MtrunA17_Chr2g0331821 57.801 391 155 4 1 383 372 760 1.39e-144 428
Msa0805700 MtrunA17_Chr3g0139411 52.821 390 173 3 1 383 327 712 7.63e-134 399
Msa0805700 MtrunA17_Chr8g0335341 33.973 365 216 8 19 361 344 705 4.72e-46 167
Msa0805700 MtrunA17_Chr7g0250681 32.353 340 219 4 30 361 489 825 7.28e-46 168
Msa0805700 MtrunA17_Chr5g0405741 31.672 341 222 6 32 368 295 628 1.65e-39 149
Msa0805700 MtrunA17_Chr1g0211271 26.260 377 252 9 21 380 361 728 7.78e-27 112
Msa0805700 MtrunA17_Chr2g0303521 26.902 368 258 6 3 366 264 624 4.83e-26 110
Msa0805700 MtrunA17_Chr5g0440551 37.126 167 105 0 32 198 431 597 3.82e-25 107
Msa0805700 MtrunA17_Chr3g0124841 24.793 363 245 9 30 373 548 901 5.49e-25 107
Msa0805700 MtrunA17_Chr3g0130761 27.324 355 235 5 31 373 433 776 1.79e-24 105
Msa0805700 MtrunA17_Chr3g0118401 34.807 181 118 0 32 212 447 627 7.32e-24 103
Msa0805700 MtrunA17_Chr4g0072011 29.643 280 161 8 10 258 388 662 4.68e-23 101
Msa0805700 MtrunA17_Chr2g0298171 32.377 244 141 6 33 255 628 868 1.42e-22 100
Msa0805700 MtrunA17_Chr3g0143731 26.437 348 224 8 29 371 359 679 5.20e-20 92.0
Msa0805700 MtrunA17_Chr5g0448571 26.718 262 169 6 30 271 435 693 1.63e-19 90.5
Msa0805700 MtrunA17_Chr8g0382541 24.074 162 116 1 110 264 1 162 9.15e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805700 AT1G52320.3 51.671 389 179 3 1 382 75 461 2.35e-131 385
Msa0805700 AT1G52320.4 51.671 389 179 3 1 382 75 461 2.35e-131 385
Msa0805700 AT1G52320.1 51.671 389 179 3 1 382 378 764 1.87e-128 387
Msa0805700 AT1G52320.2 51.671 389 179 3 1 382 401 787 3.44e-128 387
Msa0805700 AT1G52320.5 51.671 389 179 3 1 382 401 787 3.44e-128 387
Msa0805700 AT5G25590.1 48.825 383 187 4 1 375 381 762 5.86e-112 345
Msa0805700 AT3G51290.3 33.053 357 213 8 32 379 290 629 9.86e-42 155
Msa0805700 AT3G51290.2 33.053 357 213 8 32 379 290 629 2.61e-41 155
Msa0805700 AT1G02110.1 31.624 351 225 5 30 369 355 701 1.39e-40 152
Msa0805700 AT3G60320.1 31.006 358 227 6 30 369 439 794 7.69e-38 145
Msa0805700 AT3G51290.1 32.213 357 210 9 32 379 290 623 4.45e-36 139
Msa0805700 AT1G77500.1 26.098 387 242 8 1 373 516 872 2.34e-28 117
Msa0805700 AT1G21740.1 24.725 364 245 6 30 373 589 943 7.56e-26 110
Msa0805700 AT2G27090.2 29.600 250 168 1 32 273 427 676 9.59e-26 109
Msa0805700 AT2G27090.1 29.600 250 168 1 32 273 427 676 9.59e-26 109
Msa0805700 AT2G34670.2 28.571 245 164 4 32 270 336 575 3.09e-22 99.0
Msa0805700 AT4G35240.2 25.896 251 174 4 13 253 487 735 2.35e-20 93.6
Msa0805700 AT4G35240.1 25.896 251 174 4 13 253 487 735 2.35e-20 93.6
Msa0805700 AT4G35240.4 25.896 251 174 4 13 253 487 735 3.03e-20 93.2
Msa0805700 AT4G35240.3 25.896 251 174 4 13 253 487 735 3.03e-20 93.2
Msa0805700 AT2G17110.1 26.471 238 156 4 30 253 400 632 4.12e-20 92.8
Msa0805700 AT4G39790.1 24.481 241 169 3 32 261 374 612 1.68e-19 90.9
Msa0805700 AT2G34670.1 29.665 209 136 4 32 234 336 539 1.98e-17 84.3
Msa0805700 AT2G19090.1 30.488 246 148 6 33 258 482 724 2.70e-17 84.3
Msa0805700 AT5G54480.1 26.012 346 231 11 30 374 397 718 5.12e-16 80.1
Msa0805700 AT1G20530.1 27.434 226 149 4 16 230 288 509 2.39e-14 75.1
Msa0805700 AT4G30130.3 28.512 242 156 5 33 258 401 641 2.61e-14 75.1
Msa0805700 AT4G30130.1 28.512 242 156 5 33 258 401 641 2.61e-14 75.1

Find 60 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTCACTTCATCAGTATT+TGG 0.203600 5_3:+22438559 None:intergenic
TCGTTGTATCACTCTCAATA+AGG 0.262337 5_3:+22437266 None:intergenic
TTATGTTTATAGACTAATTA+TGG 0.280659 5_3:-22438754 Msa0805700:five_prime_UTR
AAAGATAGTTATACAAAATA+TGG 0.286678 5_3:+22438690 None:intergenic
TGATAGTTAACTGCTTCTTA+TGG 0.300998 5_3:+22437467 None:intergenic
GTTAAGGGAGAAGAGAGTTT+TGG 0.331409 5_3:-22436945 Msa0805700:CDS
CGTTGTATCACTCTCAATAA+GGG 0.347533 5_3:+22437267 None:intergenic
AAAAGCAGCTCTGAGTCATT+TGG 0.353000 5_3:-22438177 Msa0805700:CDS
ATGATCCTCCCGAGGTGTTA+AGG 0.357948 5_3:-22436961 Msa0805700:CDS
TACAAATCCTTCTTCATGCT+TGG 0.366749 5_3:-22437222 Msa0805700:CDS
GAAACTTTATAGTGAAGTTA+AGG 0.375843 5_3:-22438470 Msa0805700:intron
TCAACAAGCTGCACAAGTTT+CGG 0.397233 5_3:+22438074 None:intergenic
AGGTTTGTAGCACATAGATT+AGG 0.406861 5_3:-22436761 Msa0805700:CDS
TATTAGACAAGTTGCTAGCT+TGG 0.414094 5_3:-22438498 Msa0805700:CDS
TAATTATGGTTAAGTACTAA+TGG 0.419057 5_3:-22438740 Msa0805700:five_prime_UTR
TGATCCTCCCGAGGTGTTAA+GGG 0.421450 5_3:-22436960 Msa0805700:CDS
TCATCAAAGCCTTATATAGT+TGG 0.423802 5_3:-22437306 Msa0805700:CDS
AAACTTGTGCAGCTTGTTGA+TGG 0.440917 5_3:-22438071 Msa0805700:CDS
GATGAATTTGATCGAAATAG+AGG 0.443881 5_3:-22436998 Msa0805700:CDS
ATTAGACAAGTTGCTAGCTT+GGG 0.467823 5_3:-22438497 Msa0805700:CDS
GCTATTCTAGCATGTTCATC+AGG 0.473444 5_3:+22437178 None:intergenic
AAAGCAGACGATTTGATCAA+TGG 0.474828 5_3:-22437051 Msa0805700:CDS
CTTCTTATGGTGGGAATGCA+TGG 0.485259 5_3:+22437480 None:intergenic
AGTATTTGGTGTTTCTCTGA+AGG 0.495516 5_3:+22438573 None:intergenic
CTCTTCTCCCTTAACACCTC+GGG 0.495944 5_3:+22436953 None:intergenic
AAGCAGACGATTTGATCAAT+GGG 0.500394 5_3:-22437050 Msa0805700:CDS
ACTAGAGAAGAGGTTGGATG+AGG 0.509562 5_3:-22436918 Msa0805700:CDS
GGTTGAACTAGAGAAGAGGT+TGG 0.517571 5_3:-22436924 Msa0805700:CDS
GTTGAATGTTATGCAAGAGT+TGG 0.519426 5_3:-22437368 Msa0805700:CDS
CACAGCAGCGAAATGTGATA+AGG 0.522104 5_3:+22437156 None:intergenic
GATCATTCCAAGCATGAAGA+AGG 0.533691 5_3:+22437215 None:intergenic
ACGGTTAAAATGCATTTGCT+AGG 0.534023 5_3:-22438824 Msa0805700:five_prime_UTR
CTTATCACATTTCGCTGCTG+TGG 0.536454 5_3:-22437155 Msa0805700:CDS
TCACCCTTGCAGAGTAATCA+AGG 0.539942 5_3:+22438620 None:intergenic
GGGTGATGCGAGTTGTAACA+TGG 0.550646 5_3:-22438603 Msa0805700:exon
TAGTTAACTGCTTCTTATGG+TGG 0.551259 5_3:+22437470 None:intergenic
AGTTAACTGCTTCTTATGGT+GGG 0.553032 5_3:+22437471 None:intergenic
AGCATGAAGAAGGATTTGTA+AGG 0.557102 5_3:+22437225 None:intergenic
AACTTGTGCAGCTTGTTGAT+GGG 0.558129 5_3:-22438070 Msa0805700:intron
ATGTTAAGTGTTGTCAAGGA+AGG 0.561822 5_3:-22438717 Msa0805700:five_prime_UTR
TGCGAGTTGTAACATGGGAC+AGG 0.561904 5_3:-22438597 Msa0805700:CDS
AGGTTCAAACATTGAAACAT+TGG 0.566135 5_3:-22438207 Msa0805700:CDS
ATGGATGTTAAGTGTTGTCA+AGG 0.571071 5_3:-22438721 Msa0805700:five_prime_UTR
TGGTGTTCACTTGTTTCCGT+AGG 0.572182 5_3:+22437412 None:intergenic
ACTAGATTCTCAGTTTCCTA+CGG 0.575162 5_3:-22437428 Msa0805700:CDS
GCTAGGCATTCGTGAGACAA+AGG 0.590644 5_3:-22438807 Msa0805700:five_prime_UTR
ACTGATATGTTCTATCATGA+TGG 0.604476 5_3:+22437392 None:intergenic
TGTTAAGTGTTGTCAAGGAA+GGG 0.611444 5_3:-22438716 Msa0805700:five_prime_UTR
TCTCTTCTCCCTTAACACCT+CGG 0.616966 5_3:+22436952 None:intergenic
ACACCTTGATTACTCTGCAA+GGG 0.619662 5_3:-22438623 Msa0805700:five_prime_UTR
GACACCTTGATTACTCTGCA+AGG 0.621022 5_3:-22438624 Msa0805700:five_prime_UTR
TTCTCCCTTAACACCTCGGG+AGG 0.631313 5_3:+22436956 None:intergenic
ATGCATGGTTCTCCACATTG+TGG 0.645063 5_3:+22437495 None:intergenic
GCATGAAGAAGGATTTGTAA+GGG 0.648368 5_3:+22437226 None:intergenic
TGATATTAATGATCCTCCCG+AGG 0.688466 5_3:-22436969 Msa0805700:CDS
ATAAACATAAATCTCAACGA+GGG 0.692871 5_3:+22438767 None:intergenic
GGTGATGCGAGTTGTAACAT+GGG 0.702721 5_3:-22438602 Msa0805700:exon
AAAATGCGAGGAGATACGAA+AGG 0.709702 5_3:-22437086 Msa0805700:CDS
AATACAGGATGGCCACAATG+TGG 0.720097 5_3:-22437507 Msa0805700:intron
TATAAACATAAATCTCAACG+AGG 0.760855 5_3:+22438766 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGTTTATAGACTAATTA+TGG - chr5_3:22436812-22436831 Msa0805700:CDS 15.0%
!! AAAGATAGTTATACAAAATA+TGG + chr5_3:22436879-22436898 None:intergenic 15.0%
!! TTATGAAATTAAAGAAAGTA+TGG + chr5_3:22437177-22437196 None:intergenic 15.0%
!!! AAAGTTGATAAAAAATCAAA+AGG - chr5_3:22438234-22438253 Msa0805700:CDS 15.0%
!!! AAGTTGATAAAAAATCAAAA+GGG - chr5_3:22438235-22438254 Msa0805700:CDS 15.0%
!! TTATGTTTATAGACTAATTA+TGG - chr5_3:22436812-22436831 Msa0805700:CDS 15.0%
!! AAAGATAGTTATACAAAATA+TGG + chr5_3:22436879-22436898 None:intergenic 15.0%
!! TTATGAAATTAAAGAAAGTA+TGG + chr5_3:22437177-22437196 None:intergenic 15.0%
!!! AAAGTTGATAAAAAATCAAA+AGG - chr5_3:22438234-22438253 Msa0805700:CDS 15.0%
!!! AAGTTGATAAAAAATCAAAA+GGG - chr5_3:22438235-22438254 Msa0805700:CDS 15.0%
!! TAATTATGGTTAAGTACTAA+TGG - chr5_3:22436826-22436845 Msa0805700:CDS 20.0%
!!! ATTTTGTATTTTTCTTTTGC+AGG - chr5_3:22436920-22436939 Msa0805700:CDS 20.0%
!! GGTAAATTTATTAAACTCTT+AGG + chr5_3:22437156-22437175 None:intergenic 20.0%
!!! CTTCATTTGATTTAATGTTT+TGG - chr5_3:22437745-22437764 Msa0805700:intron 20.0%
!! TAATTATGGTTAAGTACTAA+TGG - chr5_3:22436826-22436845 Msa0805700:CDS 20.0%
!!! ATTTTGTATTTTTCTTTTGC+AGG - chr5_3:22436920-22436939 Msa0805700:CDS 20.0%
!! GGTAAATTTATTAAACTCTT+AGG + chr5_3:22437156-22437175 None:intergenic 20.0%
!!! CTTCATTTGATTTAATGTTT+TGG - chr5_3:22437745-22437764 Msa0805700:intron 20.0%
! ATAAACATAAATCTCAACGA+GGG + chr5_3:22436802-22436821 None:intergenic 25.0%
! TATAAACATAAATCTCAACG+AGG + chr5_3:22436803-22436822 None:intergenic 25.0%
!!! AGTGAAAGATGATTTTGATT+CGG - chr5_3:22437021-22437040 Msa0805700:CDS 25.0%
! GAAACTTTATAGTGAAGTTA+AGG - chr5_3:22437096-22437115 Msa0805700:CDS 25.0%
! AGTAGAAACTTATGTGATAT+AGG - chr5_3:22437126-22437145 Msa0805700:CDS 25.0%
! AAAATCTGAGTACCAAAAAA+AGG - chr5_3:22437308-22437327 Msa0805700:CDS 25.0%
!! TACAATTCAGTTTTCTGTAA+AGG - chr5_3:22437884-22437903 Msa0805700:intron 25.0%
!!! CAGTTTTAACCAACTATATA+AGG + chr5_3:22438272-22438291 None:intergenic 25.0%
!! CAAAAAAGTACAGTGAATTA+AGG - chr5_3:22438785-22438804 Msa0805700:five_prime_UTR 25.0%
! ATAAACATAAATCTCAACGA+GGG + chr5_3:22436802-22436821 None:intergenic 25.0%
! TATAAACATAAATCTCAACG+AGG + chr5_3:22436803-22436822 None:intergenic 25.0%
!!! AGTGAAAGATGATTTTGATT+CGG - chr5_3:22437021-22437040 Msa0805700:CDS 25.0%
! GAAACTTTATAGTGAAGTTA+AGG - chr5_3:22437096-22437115 Msa0805700:CDS 25.0%
! AGTAGAAACTTATGTGATAT+AGG - chr5_3:22437126-22437145 Msa0805700:CDS 25.0%
! AAAATCTGAGTACCAAAAAA+AGG - chr5_3:22437308-22437327 Msa0805700:CDS 25.0%
!! TACAATTCAGTTTTCTGTAA+AGG - chr5_3:22437884-22437903 Msa0805700:intron 25.0%
!!! CAGTTTTAACCAACTATATA+AGG + chr5_3:22438272-22438291 None:intergenic 25.0%
!! CAAAAAAGTACAGTGAATTA+AGG - chr5_3:22438785-22438804 Msa0805700:five_prime_UTR 25.0%
TCTTTCACTTCATCAGTATT+TGG + chr5_3:22437010-22437029 None:intergenic 30.0%
AGGTTCAAACATTGAAACAT+TGG - chr5_3:22437359-22437378 Msa0805700:CDS 30.0%
TATTGCCATGCAAAATTGTT+AGG - chr5_3:22437581-22437600 Msa0805700:intron 30.0%
TGCTAATATACAGTTCAACT+TGG - chr5_3:22437790-22437809 Msa0805700:intron 30.0%
! AAATCGACGAACTTTTGTAA+AGG + chr5_3:22437951-22437970 None:intergenic 30.0%
TGACTAGCATAACAATTATC+CGG + chr5_3:22438000-22438019 None:intergenic 30.0%
!!! GATGTTTTTTCATGCAATAC+AGG - chr5_3:22438044-22438063 Msa0805700:intron 30.0%
!!! TTTTTTCATGCAATACAGGA+TGG - chr5_3:22438048-22438067 Msa0805700:intron 30.0%
TGATAGTTAACTGCTTCTTA+TGG + chr5_3:22438102-22438121 None:intergenic 30.0%
ACTGATATGTTCTATCATGA+TGG + chr5_3:22438177-22438196 None:intergenic 30.0%
! TCATCAAAGCCTTATATAGT+TGG - chr5_3:22438260-22438279 Msa0805700:CDS 30.0%
!! GATTTTAAAGAGAAAATGCG+AGG - chr5_3:22438468-22438487 Msa0805700:intron 30.0%
GATGAATTTGATCGAAATAG+AGG - chr5_3:22438568-22438587 Msa0805700:CDS 30.0%
!!! TAACTTGCTAGAGCTTTTAA+AGG - chr5_3:22438735-22438754 Msa0805700:five_prime_UTR 30.0%
TCTTTCACTTCATCAGTATT+TGG + chr5_3:22437010-22437029 None:intergenic 30.0%
AGGTTCAAACATTGAAACAT+TGG - chr5_3:22437359-22437378 Msa0805700:CDS 30.0%
TATTGCCATGCAAAATTGTT+AGG - chr5_3:22437581-22437600 Msa0805700:intron 30.0%
TGCTAATATACAGTTCAACT+TGG - chr5_3:22437790-22437809 Msa0805700:intron 30.0%
! AAATCGACGAACTTTTGTAA+AGG + chr5_3:22437951-22437970 None:intergenic 30.0%
TGACTAGCATAACAATTATC+CGG + chr5_3:22438000-22438019 None:intergenic 30.0%
!!! GATGTTTTTTCATGCAATAC+AGG - chr5_3:22438044-22438063 Msa0805700:intron 30.0%
!!! TTTTTTCATGCAATACAGGA+TGG - chr5_3:22438048-22438067 Msa0805700:intron 30.0%
TGATAGTTAACTGCTTCTTA+TGG + chr5_3:22438102-22438121 None:intergenic 30.0%
ACTGATATGTTCTATCATGA+TGG + chr5_3:22438177-22438196 None:intergenic 30.0%
! TCATCAAAGCCTTATATAGT+TGG - chr5_3:22438260-22438279 Msa0805700:CDS 30.0%
!! GATTTTAAAGAGAAAATGCG+AGG - chr5_3:22438468-22438487 Msa0805700:intron 30.0%
GATGAATTTGATCGAAATAG+AGG - chr5_3:22438568-22438587 Msa0805700:CDS 30.0%
!!! TAACTTGCTAGAGCTTTTAA+AGG - chr5_3:22438735-22438754 Msa0805700:five_prime_UTR 30.0%
! ATGGATGTTAAGTGTTGTCA+AGG - chr5_3:22436845-22436864 Msa0805700:CDS 35.0%
! ATGTTAAGTGTTGTCAAGGA+AGG - chr5_3:22436849-22436868 Msa0805700:CDS 35.0%
! TGTTAAGTGTTGTCAAGGAA+GGG - chr5_3:22436850-22436869 Msa0805700:CDS 35.0%
!! AGTATTTGGTGTTTCTCTGA+AGG + chr5_3:22436996-22437015 None:intergenic 35.0%
!!! GAAAGATGATTTTGATTCGG+AGG - chr5_3:22437024-22437043 Msa0805700:CDS 35.0%
TATTAGACAAGTTGCTAGCT+TGG - chr5_3:22437068-22437087 Msa0805700:CDS 35.0%
! ATTAGACAAGTTGCTAGCTT+GGG - chr5_3:22437069-22437088 Msa0805700:CDS 35.0%
! AGAACAGAACAAAAAGTGTG+TGG + chr5_3:22437245-22437264 None:intergenic 35.0%
GCAGCTGAATATTGTTTCAT+AGG - chr5_3:22437272-22437291 Msa0805700:CDS 35.0%
!!! TTTTTCTAGCTTGTCGATAG+TGG + chr5_3:22437337-22437356 None:intergenic 35.0%
ATCGACAAGCTAGAAAAAAG+AGG - chr5_3:22437339-22437358 Msa0805700:CDS 35.0%
! ACCATCCTAACAATTTTGCA+TGG + chr5_3:22437589-22437608 None:intergenic 35.0%
!! TTCGATTTATCGGTTCTGTT+CGG + chr5_3:22437624-22437643 None:intergenic 35.0%
TTCAGTGCAGTTCGATTTAT+CGG + chr5_3:22437634-22437653 None:intergenic 35.0%
CTAAAAGAACCAAACTGTGA+TGG + chr5_3:22437719-22437738 None:intergenic 35.0%
!!! CATCACAGTTTGGTTCTTTT+AGG - chr5_3:22437717-22437736 Msa0805700:intron 35.0%
!! ATACAGTTCAACTTGGCTTT+TGG - chr5_3:22437797-22437816 Msa0805700:intron 35.0%
! GTTTTCTGTAAAGGTAGTCT+TGG - chr5_3:22437893-22437912 Msa0805700:intron 35.0%
ACAATTATCCGGACTATTCA+TGG + chr5_3:22437989-22438008 None:intergenic 35.0%
AGTTAACTGCTTCTTATGGT+GGG + chr5_3:22438098-22438117 None:intergenic 35.0%
TAGTTAACTGCTTCTTATGG+TGG + chr5_3:22438099-22438118 None:intergenic 35.0%
ACTAGATTCTCAGTTTCCTA+CGG - chr5_3:22438138-22438157 Msa0805700:CDS 35.0%
GTTGAATGTTATGCAAGAGT+TGG - chr5_3:22438198-22438217 Msa0805700:CDS 35.0%
CGTTGTATCACTCTCAATAA+GGG + chr5_3:22438302-22438321 None:intergenic 35.0%
TCGTTGTATCACTCTCAATA+AGG + chr5_3:22438303-22438322 None:intergenic 35.0%
GCATGAAGAAGGATTTGTAA+GGG + chr5_3:22438343-22438362 None:intergenic 35.0%
AGCATGAAGAAGGATTTGTA+AGG + chr5_3:22438344-22438363 None:intergenic 35.0%
TACAAATCCTTCTTCATGCT+TGG - chr5_3:22438344-22438363 Msa0805700:intron 35.0%
AAAGCAGACGATTTGATCAA+TGG - chr5_3:22438515-22438534 Msa0805700:CDS 35.0%
AAGCAGACGATTTGATCAAT+GGG - chr5_3:22438516-22438535 Msa0805700:CDS 35.0%
!! TTTTGGTTGAACTAGAGAAG+AGG - chr5_3:22438638-22438657 Msa0805700:five_prime_UTR 35.0%
AGGTTTGTAGCACATAGATT+AGG - chr5_3:22438805-22438824 Msa0805700:five_prime_UTR 35.0%
! ATGGATGTTAAGTGTTGTCA+AGG - chr5_3:22436845-22436864 Msa0805700:CDS 35.0%
! ATGTTAAGTGTTGTCAAGGA+AGG - chr5_3:22436849-22436868 Msa0805700:CDS 35.0%
! TGTTAAGTGTTGTCAAGGAA+GGG - chr5_3:22436850-22436869 Msa0805700:CDS 35.0%
!! AGTATTTGGTGTTTCTCTGA+AGG + chr5_3:22436996-22437015 None:intergenic 35.0%
!!! GAAAGATGATTTTGATTCGG+AGG - chr5_3:22437024-22437043 Msa0805700:CDS 35.0%
TATTAGACAAGTTGCTAGCT+TGG - chr5_3:22437068-22437087 Msa0805700:CDS 35.0%
! ATTAGACAAGTTGCTAGCTT+GGG - chr5_3:22437069-22437088 Msa0805700:CDS 35.0%
! AGAACAGAACAAAAAGTGTG+TGG + chr5_3:22437245-22437264 None:intergenic 35.0%
GCAGCTGAATATTGTTTCAT+AGG - chr5_3:22437272-22437291 Msa0805700:CDS 35.0%
!!! TTTTTCTAGCTTGTCGATAG+TGG + chr5_3:22437337-22437356 None:intergenic 35.0%
ATCGACAAGCTAGAAAAAAG+AGG - chr5_3:22437339-22437358 Msa0805700:CDS 35.0%
! ACCATCCTAACAATTTTGCA+TGG + chr5_3:22437589-22437608 None:intergenic 35.0%
!! TTCGATTTATCGGTTCTGTT+CGG + chr5_3:22437624-22437643 None:intergenic 35.0%
TTCAGTGCAGTTCGATTTAT+CGG + chr5_3:22437634-22437653 None:intergenic 35.0%
CTAAAAGAACCAAACTGTGA+TGG + chr5_3:22437719-22437738 None:intergenic 35.0%
!!! CATCACAGTTTGGTTCTTTT+AGG - chr5_3:22437717-22437736 Msa0805700:intron 35.0%
!! ATACAGTTCAACTTGGCTTT+TGG - chr5_3:22437797-22437816 Msa0805700:intron 35.0%
! GTTTTCTGTAAAGGTAGTCT+TGG - chr5_3:22437893-22437912 Msa0805700:intron 35.0%
ACAATTATCCGGACTATTCA+TGG + chr5_3:22437989-22438008 None:intergenic 35.0%
AGTTAACTGCTTCTTATGGT+GGG + chr5_3:22438098-22438117 None:intergenic 35.0%
TAGTTAACTGCTTCTTATGG+TGG + chr5_3:22438099-22438118 None:intergenic 35.0%
ACTAGATTCTCAGTTTCCTA+CGG - chr5_3:22438138-22438157 Msa0805700:CDS 35.0%
GTTGAATGTTATGCAAGAGT+TGG - chr5_3:22438198-22438217 Msa0805700:CDS 35.0%
CGTTGTATCACTCTCAATAA+GGG + chr5_3:22438302-22438321 None:intergenic 35.0%
TCGTTGTATCACTCTCAATA+AGG + chr5_3:22438303-22438322 None:intergenic 35.0%
GCATGAAGAAGGATTTGTAA+GGG + chr5_3:22438343-22438362 None:intergenic 35.0%
AGCATGAAGAAGGATTTGTA+AGG + chr5_3:22438344-22438363 None:intergenic 35.0%
TACAAATCCTTCTTCATGCT+TGG - chr5_3:22438344-22438363 Msa0805700:intron 35.0%
AAAGCAGACGATTTGATCAA+TGG - chr5_3:22438515-22438534 Msa0805700:CDS 35.0%
AAGCAGACGATTTGATCAAT+GGG - chr5_3:22438516-22438535 Msa0805700:CDS 35.0%
!! TTTTGGTTGAACTAGAGAAG+AGG - chr5_3:22438638-22438657 Msa0805700:five_prime_UTR 35.0%
AGGTTTGTAGCACATAGATT+AGG - chr5_3:22438805-22438824 Msa0805700:five_prime_UTR 35.0%
ACACCTTGATTACTCTGCAA+GGG - chr5_3:22436943-22436962 Msa0805700:CDS 40.0%
!!! CGATAGTGGCAACCTTTTTT+TGG + chr5_3:22437323-22437342 None:intergenic 40.0%
!! AAAAGCAGCTCTGAGTCATT+TGG - chr5_3:22437389-22437408 Msa0805700:CDS 40.0%
TCAACAAGCTGCACAAGTTT+CGG + chr5_3:22437495-22437514 None:intergenic 40.0%
!! AAACTTGTGCAGCTTGTTGA+TGG - chr5_3:22437495-22437514 Msa0805700:CDS 40.0%
!! AACTTGTGCAGCTTGTTGAT+GGG - chr5_3:22437496-22437515 Msa0805700:CDS 40.0%
GCCATGCAAAATTGTTAGGA+TGG - chr5_3:22437585-22437604 Msa0805700:intron 40.0%
GTGAACTGCACATCATAGTT+TGG + chr5_3:22437662-22437681 None:intergenic 40.0%
! CTGTAAAGGTAGTCTTGGTT+CGG - chr5_3:22437898-22437917 Msa0805700:intron 40.0%
TCGGTTCACAAACATGGATT+CGG - chr5_3:22437917-22437936 Msa0805700:intron 40.0%
TATCCGGACTATTCATGGTT+CGG + chr5_3:22437984-22438003 None:intergenic 40.0%
GATCATTCCAAGCATGAAGA+AGG + chr5_3:22438354-22438373 None:intergenic 40.0%
GCTATTCTAGCATGTTCATC+AGG + chr5_3:22438391-22438410 None:intergenic 40.0%
AAAATGCGAGGAGATACGAA+AGG - chr5_3:22438480-22438499 Msa0805700:CDS 40.0%
TGATATTAATGATCCTCCCG+AGG - chr5_3:22438597-22438616 Msa0805700:CDS 40.0%
! GTTAAGGGAGAAGAGAGTTT+TGG - chr5_3:22438621-22438640 Msa0805700:five_prime_UTR 40.0%
ACACCTTGATTACTCTGCAA+GGG - chr5_3:22436943-22436962 Msa0805700:CDS 40.0%
!!! CGATAGTGGCAACCTTTTTT+TGG + chr5_3:22437323-22437342 None:intergenic 40.0%
!! AAAAGCAGCTCTGAGTCATT+TGG - chr5_3:22437389-22437408 Msa0805700:CDS 40.0%
TCAACAAGCTGCACAAGTTT+CGG + chr5_3:22437495-22437514 None:intergenic 40.0%
!! AAACTTGTGCAGCTTGTTGA+TGG - chr5_3:22437495-22437514 Msa0805700:CDS 40.0%
!! AACTTGTGCAGCTTGTTGAT+GGG - chr5_3:22437496-22437515 Msa0805700:CDS 40.0%
GCCATGCAAAATTGTTAGGA+TGG - chr5_3:22437585-22437604 Msa0805700:intron 40.0%
GTGAACTGCACATCATAGTT+TGG + chr5_3:22437662-22437681 None:intergenic 40.0%
! CTGTAAAGGTAGTCTTGGTT+CGG - chr5_3:22437898-22437917 Msa0805700:intron 40.0%
TCGGTTCACAAACATGGATT+CGG - chr5_3:22437917-22437936 Msa0805700:intron 40.0%
TATCCGGACTATTCATGGTT+CGG + chr5_3:22437984-22438003 None:intergenic 40.0%
GATCATTCCAAGCATGAAGA+AGG + chr5_3:22438354-22438373 None:intergenic 40.0%
GCTATTCTAGCATGTTCATC+AGG + chr5_3:22438391-22438410 None:intergenic 40.0%
AAAATGCGAGGAGATACGAA+AGG - chr5_3:22438480-22438499 Msa0805700:CDS 40.0%
TGATATTAATGATCCTCCCG+AGG - chr5_3:22438597-22438616 Msa0805700:CDS 40.0%
! GTTAAGGGAGAAGAGAGTTT+TGG - chr5_3:22438621-22438640 Msa0805700:five_prime_UTR 40.0%
GACACCTTGATTACTCTGCA+AGG - chr5_3:22436942-22436961 Msa0805700:CDS 45.0%
TCACCCTTGCAGAGTAATCA+AGG + chr5_3:22436949-22436968 None:intergenic 45.0%
GGTGATGCGAGTTGTAACAT+GGG - chr5_3:22436964-22436983 Msa0805700:CDS 45.0%
GCGAACTATCCATCACAGTT+TGG - chr5_3:22437707-22437726 Msa0805700:intron 45.0%
!! CTTGGTTCGGTTCACAAACA+TGG - chr5_3:22437911-22437930 Msa0805700:intron 45.0%
!! GACTATTCATGGTTCGGTTC+AGG + chr5_3:22437978-22437997 None:intergenic 45.0%
GAACCGAACCATGAATAGTC+CGG - chr5_3:22437978-22437997 Msa0805700:intron 45.0%
AATACAGGATGGCCACAATG+TGG - chr5_3:22438059-22438078 Msa0805700:intron 45.0%
ATGCATGGTTCTCCACATTG+TGG + chr5_3:22438074-22438093 None:intergenic 45.0%
! CTTCTTATGGTGGGAATGCA+TGG + chr5_3:22438089-22438108 None:intergenic 45.0%
TGGTGTTCACTTGTTTCCGT+AGG + chr5_3:22438157-22438176 None:intergenic 45.0%
CACAGCAGCGAAATGTGATA+AGG + chr5_3:22438413-22438432 None:intergenic 45.0%
CTTATCACATTTCGCTGCTG+TGG - chr5_3:22438411-22438430 Msa0805700:intron 45.0%
TCTCTTCTCCCTTAACACCT+CGG + chr5_3:22438617-22438636 None:intergenic 45.0%
GGTTGAACTAGAGAAGAGGT+TGG - chr5_3:22438642-22438661 Msa0805700:five_prime_UTR 45.0%
ACTAGAGAAGAGGTTGGATG+AGG - chr5_3:22438648-22438667 Msa0805700:five_prime_UTR 45.0%
AAAAACAGTGCCTACGTGTG+AGG - chr5_3:22438686-22438705 Msa0805700:five_prime_UTR 45.0%
! GTGATTTTTGCCTCACACGT+AGG + chr5_3:22438699-22438718 None:intergenic 45.0%
GACACCTTGATTACTCTGCA+AGG - chr5_3:22436942-22436961 Msa0805700:CDS 45.0%
TCACCCTTGCAGAGTAATCA+AGG + chr5_3:22436949-22436968 None:intergenic 45.0%
GGTGATGCGAGTTGTAACAT+GGG - chr5_3:22436964-22436983 Msa0805700:CDS 45.0%
GCGAACTATCCATCACAGTT+TGG - chr5_3:22437707-22437726 Msa0805700:intron 45.0%
!! CTTGGTTCGGTTCACAAACA+TGG - chr5_3:22437911-22437930 Msa0805700:intron 45.0%
!! GACTATTCATGGTTCGGTTC+AGG + chr5_3:22437978-22437997 None:intergenic 45.0%
GAACCGAACCATGAATAGTC+CGG - chr5_3:22437978-22437997 Msa0805700:intron 45.0%
AATACAGGATGGCCACAATG+TGG - chr5_3:22438059-22438078 Msa0805700:intron 45.0%
ATGCATGGTTCTCCACATTG+TGG + chr5_3:22438074-22438093 None:intergenic 45.0%
! CTTCTTATGGTGGGAATGCA+TGG + chr5_3:22438089-22438108 None:intergenic 45.0%
TGGTGTTCACTTGTTTCCGT+AGG + chr5_3:22438157-22438176 None:intergenic 45.0%
CACAGCAGCGAAATGTGATA+AGG + chr5_3:22438413-22438432 None:intergenic 45.0%
CTTATCACATTTCGCTGCTG+TGG - chr5_3:22438411-22438430 Msa0805700:intron 45.0%
TCTCTTCTCCCTTAACACCT+CGG + chr5_3:22438617-22438636 None:intergenic 45.0%
GGTTGAACTAGAGAAGAGGT+TGG - chr5_3:22438642-22438661 Msa0805700:five_prime_UTR 45.0%
ACTAGAGAAGAGGTTGGATG+AGG - chr5_3:22438648-22438667 Msa0805700:five_prime_UTR 45.0%
AAAAACAGTGCCTACGTGTG+AGG - chr5_3:22438686-22438705 Msa0805700:five_prime_UTR 45.0%
! GTGATTTTTGCCTCACACGT+AGG + chr5_3:22438699-22438718 None:intergenic 45.0%
GCTAGGCATTCGTGAGACAA+AGG - chr5_3:22436759-22436778 Msa0805700:CDS 50.0%
GGGTGATGCGAGTTGTAACA+TGG - chr5_3:22436963-22436982 Msa0805700:CDS 50.0%
TGCGAGTTGTAACATGGGAC+AGG - chr5_3:22436969-22436988 Msa0805700:CDS 50.0%
GGATAGTTCGCGAACTGAAC+TGG + chr5_3:22437698-22437717 None:intergenic 50.0%
! ATGATCCTCCCGAGGTGTTA+AGG - chr5_3:22438605-22438624 Msa0805700:exon 50.0%
! TGATCCTCCCGAGGTGTTAA+GGG - chr5_3:22438606-22438625 Msa0805700:exon 50.0%
CTCTTCTCCCTTAACACCTC+GGG + chr5_3:22438616-22438635 None:intergenic 50.0%
GCTAGGCATTCGTGAGACAA+AGG - chr5_3:22436759-22436778 Msa0805700:CDS 50.0%
GGGTGATGCGAGTTGTAACA+TGG - chr5_3:22436963-22436982 Msa0805700:CDS 50.0%
TGCGAGTTGTAACATGGGAC+AGG - chr5_3:22436969-22436988 Msa0805700:CDS 50.0%
GGATAGTTCGCGAACTGAAC+TGG + chr5_3:22437698-22437717 None:intergenic 50.0%
! ATGATCCTCCCGAGGTGTTA+AGG - chr5_3:22438605-22438624 Msa0805700:exon 50.0%
! TGATCCTCCCGAGGTGTTAA+GGG - chr5_3:22438606-22438625 Msa0805700:exon 50.0%
CTCTTCTCCCTTAACACCTC+GGG + chr5_3:22438616-22438635 None:intergenic 50.0%
TTCTCCCTTAACACCTCGGG+AGG + chr5_3:22438613-22438632 None:intergenic 55.0%
TTCTCCCTTAACACCTCGGG+AGG + chr5_3:22438613-22438632 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 22436745 22438843 22436745 ID=Msa0805700;Name=Msa0805700
chr5_3 mRNA 22436745 22438843 22436745 ID=Msa0805700-mRNA-1;Parent=Msa0805700;Name=Msa0805700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=223|1|0.66|1|1|1|3|0|383
chr5_3 exon 22436745 22437522 22436745 ID=Msa0805700-mRNA-1:exon:8989;Parent=Msa0805700-mRNA-1
chr5_3 exon 22438071 22438294 22438071 ID=Msa0805700-mRNA-1:exon:8988;Parent=Msa0805700-mRNA-1
chr5_3 exon 22438471 22438843 22438471 ID=Msa0805700-mRNA-1:exon:8987;Parent=Msa0805700-mRNA-1
chr5_3 five_prime_UTR 22438621 22438843 22438621 ID=Msa0805700-mRNA-1:five_prime_utr;Parent=Msa0805700-mRNA-1
chr5_3 CDS 22438471 22438620 22438471 ID=Msa0805700-mRNA-1:cds;Parent=Msa0805700-mRNA-1
chr5_3 CDS 22438071 22438294 22438071 ID=Msa0805700-mRNA-1:cds;Parent=Msa0805700-mRNA-1
chr5_3 CDS 22436745 22437522 22436745 ID=Msa0805700-mRNA-1:cds;Parent=Msa0805700-mRNA-1
Gene Sequence

>Msa0805700

ATGCGAGTTGTAACATGGGACAGGTCCTTCAGAGAAACACCAAATACTGATGAAGTGAAAGATGATTTTGATTCGGAGGAGCGTGAAACTCTTGCTACTGTATTAGACAAGTTGCTAGCTTGGGAAAAGAAACTTTATAGTGAAGTTAAGGCTGCTGAGTTAACAAAATCTGAGTACCAAAAAAAGGTTGCCACTATCGACAAGCTAGAAAAAAGAGGTTCAAACATTGAAACATTGGAGAAAGAAAAAGCAGCTCTGAGTCATTTGGATTCAGTGTACATTGTAGATATGCAATTATTAGACTCGACAATTTCAGAGATAAATGATTTACGCGATCAACAATTGTATCCGAAACTTGTGCAGCTTGTTGATGGGATGGCCACAATGTGGAGAACCATGCATTCCCACCATAAGAAGCAGTTAACTATCATTAAGTTATTGAAATCACTAGATTCTCAGTTTCCTACGGAAACAAGTGAACACCATCATGATAGAACATATCAGTTGTTGAATGTTATGCAAGAGTTGGAATCACAGTTTGAAAAGTTGATAAAAAATCAAAAGGGTTTCATCAAAGCCTTATATAGTTGGTTAAAACTGAATCTTACCCTTATTGAGAGTGATACAACGAAAAAGATTTCTTCAACACCCTTACAAATCCTTCTTCATGCTTGGAATGATCATCTAGAGAAACTTCCTGATGAACATGCTAGAATAGCCTTATCACATTTCGCTGCTGTGGTAGATTCTCTTTATCAACATCAAGAACAAGAGCTGATTTTAAAGAGAAAATGCGAGGAGATACGAAAGGAGTATACGCGCAAAAGCAGACGATTTGATCAATGGGAGTGCAAATATAAGAAAAAGAAAAGATTAGATGAATTTGATCGAAATAGAGGCGAAGATGATATTAATGATCCTCCCGAGGTGTTAAGGGAGAAGAGAGTTTTGGTTGAACTAGAGAAGAGGTTGGATGAGGAAAAAGATGCATTTGAAAAACAGTGCCTACGTGTGAGGCAAAAATCACTAAGTTGTCTCAAAAATAACTTGCTAGAGCTTTTAAAGGCTATGACTGATTTTTCATTTGAATGTTCAAAAAAGTACAGTGAATTAAGGTTTGTAGCACATAGATTAGGATCAGCAGAAAGTTGA

Protein sequence

>Msa0805700

MRVVTWDRSFRETPNTDEVKDDFDSEERETLATVLDKLLAWEKKLYSEVKAAELTKSEYQKKVATIDKLEKRGSNIETLEKEKAALSHLDSVYIVDMQLLDSTISEINDLRDQQLYPKLVQLVDGMATMWRTMHSHHKKQLTIIKLLKSLDSQFPTETSEHHHDRTYQLLNVMQELESQFEKLIKNQKGFIKALYSWLKLNLTLIESDTTKKISSTPLQILLHAWNDHLEKLPDEHARIALSHFAAVVDSLYQHQEQELILKRKCEEIRKEYTRKSRRFDQWECKYKKKKRLDEFDRNRGEDDINDPPEVLREKRVLVELEKRLDEEKDAFEKQCLRVRQKSLSCLKNNLLELLKAMTDFSFECSKKYSELRFVAHRLGSAES*