Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807610 | XP_003597698.1 | 92.617 | 149 | 11 | 0 | 117 | 265 | 1 | 149 | 2.66e-92 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807610 | sp|Q500U8|TKPR1_ARATH | 71.918 | 146 | 40 | 1 | 120 | 265 | 7 | 151 | 8.06e-69 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807610 | G7IUM5 | 92.617 | 149 | 11 | 0 | 117 | 265 | 1 | 149 | 1.27e-92 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015390 | Msa0807610 | 0.808447 | 3.082870e-50 | -8.615850e-47 |
| Msa0035150 | Msa0807610 | 0.815050 | 1.127714e-51 | -8.615850e-47 |
| Msa0052680 | Msa0807610 | 0.809706 | 1.656881e-50 | -8.615850e-47 |
| Msa0069330 | Msa0807610 | 0.801772 | 7.690554e-49 | -8.615850e-47 |
| Msa0103180 | Msa0807610 | 0.803081 | 4.132712e-49 | -8.615850e-47 |
| Msa0689420 | Msa0807610 | 0.801353 | 9.374230e-49 | -8.615850e-47 |
| Msa0721280 | Msa0807610 | 0.830905 | 2.257048e-55 | -8.615850e-47 |
| Msa0767100 | Msa0807610 | 0.808792 | 2.602785e-50 | -8.615850e-47 |
| Msa0807610 | Msa0831530 | 0.803938 | 2.745584e-49 | -8.615850e-47 |
| Msa0807610 | Msa0832090 | 0.811575 | 6.538409e-51 | -8.615850e-47 |
| Msa0807610 | Msa0833190 | -0.801283 | 9.685101e-49 | -8.615850e-47 |
| Msa0807610 | Msa0879850 | 0.803415 | 3.524607e-49 | -8.615850e-47 |
| Msa0807610 | Msa0880040 | 0.812137 | 4.931742e-51 | -8.615850e-47 |
| Msa0807610 | Msa0927990 | 0.827788 | 1.289505e-54 | -8.615850e-47 |
| Msa0807610 | Msa0934890 | 0.803576 | 3.262968e-49 | -8.615850e-47 |
| Msa0807610 | Msa0962840 | 0.811439 | 6.998681e-51 | -8.615850e-47 |
| Msa0807610 | Msa0999100 | 0.803945 | 2.735545e-49 | -8.615850e-47 |
| Msa0807610 | Msa1009750 | 0.810042 | 1.403222e-50 | -8.615850e-47 |
| Msa0807610 | Msa1027360 | 0.813502 | 2.477366e-51 | -8.615850e-47 |
| Msa0807610 | Msa1077070 | 0.821530 | 3.844100e-53 | -8.615850e-47 |
| Msa0807610 | Msa1097820 | 0.809967 | 1.456553e-50 | -8.615850e-47 |
| Msa0807610 | Msa1122780 | 0.817465 | 3.251634e-52 | -8.615850e-47 |
| Msa0807610 | Msa1127540 | 0.808941 | 2.418479e-50 | -8.615850e-47 |
| Msa0807610 | Msa1137570 | 0.819073 | 1.406042e-52 | -8.615850e-47 |
| Msa0807610 | Msa1144750 | 0.803255 | 3.804651e-49 | -8.615850e-47 |
| Msa0807610 | Msa1193290 | 0.815418 | 9.339179e-52 | -8.615850e-47 |
| Msa0807610 | Msa1201640 | 0.822318 | 2.525873e-53 | -8.615850e-47 |
| Msa0807610 | Msa1226270 | 0.804776 | 1.836159e-49 | -8.615850e-47 |
| Msa0807610 | Msa1254620 | 0.804554 | 2.043057e-49 | -8.615850e-47 |
| Msa0807610 | Msa1254730 | 0.810353 | 1.202595e-50 | -8.615850e-47 |
| Msa0807610 | Msa1263290 | -0.805152 | 1.532304e-49 | -8.615850e-47 |
| Msa0807610 | Msa1289000 | 0.804652 | 1.948825e-49 | -8.615850e-47 |
| Msa0807610 | Msa1303250 | 0.800200 | 1.611580e-48 | -8.615850e-47 |
| Msa0807610 | Msa1353470 | 0.815965 | 7.055891e-52 | -8.615850e-47 |
| Msa0807610 | Msa1357890 | 0.833748 | 4.463033e-56 | -8.615850e-47 |
| Msa0807610 | Msa1398090 | 0.835821 | 1.342171e-56 | -8.615850e-47 |
| Msa0807610 | Msa1418260 | 0.802575 | 5.256903e-49 | -8.615850e-47 |
| Msa0807610 | Msa1448640 | 0.810600 | 1.063244e-50 | -8.615850e-47 |
| Msa0807610 | Msa1449520 | 0.801091 | 1.060278e-48 | -8.615850e-47 |
| Msa0152400 | Msa0807610 | 0.800898 | 1.160970e-48 | -8.615850e-47 |
| Msa0187120 | Msa0807610 | 0.809372 | 1.954763e-50 | -8.615850e-47 |
| Msa0188350 | Msa0807610 | 0.803830 | 2.890120e-49 | -8.615850e-47 |
| Msa0233380 | Msa0807610 | 0.823314 | 1.480832e-53 | -8.615850e-47 |
| Msa0376280 | Msa0807610 | 0.815634 | 8.360704e-52 | -8.615850e-47 |
| Msa0453680 | Msa0807610 | 0.806090 | 9.737392e-50 | -8.615850e-47 |
| Msa0249580 | Msa0807610 | 0.828282 | 9.804426e-55 | -8.615850e-47 |
| Msa0271530 | Msa0807610 | 0.800217 | 1.598240e-48 | -8.615850e-47 |
| Msa0275010 | Msa0807610 | 0.801759 | 7.736020e-49 | -8.615850e-47 |
| Msa0321310 | Msa0807610 | 0.805473 | 1.312502e-49 | -8.615850e-47 |
| Msa0322900 | Msa0807610 | 0.822497 | 2.295346e-53 | -8.615850e-47 |
| Msa0326480 | Msa0807610 | 0.809465 | 1.867146e-50 | -8.615850e-47 |
| Msa0335800 | Msa0807610 | 0.802039 | 6.777716e-49 | -8.615850e-47 |
| Msa0516120 | Msa0807610 | 0.829123 | 6.138167e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807610 | MtrunA17_Chr2g0331211 | 92.617 | 149 | 11 | 0 | 117 | 265 | 1 | 149 | 2.45e-96 | 286 |
| Msa0807610 | MtrunA17_Chr8g0372051 | 93.684 | 95 | 1 | 1 | 1 | 90 | 1 | 95 | 3.11e-55 | 181 |
| Msa0807610 | MtrunA17_Chr8g0364051 | 52.055 | 146 | 68 | 2 | 121 | 265 | 8 | 152 | 1.03e-44 | 153 |
| Msa0807610 | MtrunA17_Chr3g0077231 | 51.408 | 142 | 67 | 2 | 121 | 261 | 6 | 146 | 3.78e-44 | 151 |
| Msa0807610 | MtrunA17_Chr4g0039311 | 50.685 | 146 | 70 | 2 | 121 | 265 | 11 | 155 | 4.44e-44 | 151 |
| Msa0807610 | MtrunA17_Chr8g0363831 | 51.370 | 146 | 69 | 2 | 121 | 265 | 9 | 153 | 8.81e-44 | 150 |
| Msa0807610 | MtrunA17_Chr3g0077221 | 49.664 | 149 | 73 | 2 | 114 | 261 | 3 | 150 | 1.28e-42 | 147 |
| Msa0807610 | MtrunA17_Chr4g0039321 | 49.315 | 146 | 72 | 2 | 121 | 265 | 9 | 153 | 4.70e-42 | 146 |
| Msa0807610 | MtrunA17_Chr4g0002661 | 48.701 | 154 | 69 | 4 | 115 | 264 | 7 | 154 | 2.34e-40 | 142 |
| Msa0807610 | MtrunA17_Chr4g0002961 | 46.104 | 154 | 73 | 3 | 115 | 264 | 7 | 154 | 1.41e-35 | 129 |
| Msa0807610 | MtrunA17_Chr1g0155411 | 45.833 | 144 | 75 | 2 | 121 | 264 | 8 | 148 | 4.47e-35 | 128 |
| Msa0807610 | MtrunA17_Chr1g0155431 | 43.919 | 148 | 80 | 2 | 117 | 264 | 4 | 148 | 5.39e-34 | 125 |
| Msa0807610 | MtrunA17_Chr5g0423551 | 44.138 | 145 | 80 | 1 | 120 | 264 | 3 | 146 | 3.73e-32 | 120 |
| Msa0807610 | MtrunA17_Chr2g0333781 | 45.139 | 144 | 72 | 4 | 121 | 264 | 20 | 156 | 6.59e-29 | 112 |
| Msa0807610 | MtrunA17_Chr4g0048961 | 40.816 | 147 | 85 | 2 | 118 | 264 | 11 | 155 | 1.07e-28 | 111 |
| Msa0807610 | MtrunA17_Chr4g0001321 | 43.537 | 147 | 76 | 3 | 118 | 264 | 14 | 153 | 1.08e-27 | 108 |
| Msa0807610 | MtrunA17_Chr7g0245741 | 39.726 | 146 | 84 | 4 | 120 | 264 | 7 | 149 | 8.33e-27 | 106 |
| Msa0807610 | MtrunA17_Chr5g0431311 | 39.189 | 148 | 89 | 1 | 117 | 264 | 1 | 147 | 2.62e-26 | 104 |
| Msa0807610 | MtrunA17_Chr3g0106111 | 43.077 | 130 | 73 | 1 | 117 | 246 | 1 | 129 | 2.83e-26 | 104 |
| Msa0807610 | MtrunA17_Chr7g0245731 | 40.411 | 146 | 83 | 4 | 120 | 264 | 57 | 199 | 3.59e-26 | 105 |
| Msa0807610 | MtrunA17_Chr7g0245631 | 41.096 | 146 | 82 | 4 | 120 | 264 | 7 | 149 | 5.08e-26 | 103 |
| Msa0807610 | MtrunA17_Chr7g0245671 | 38.095 | 147 | 85 | 4 | 120 | 264 | 7 | 149 | 1.27e-25 | 103 |
| Msa0807610 | MtrunA17_Chr7g0245641 | 37.415 | 147 | 87 | 4 | 120 | 264 | 44 | 187 | 2.60e-25 | 102 |
| Msa0807610 | MtrunA17_Chr4g0042101 | 38.971 | 136 | 74 | 2 | 120 | 249 | 23 | 155 | 4.90e-25 | 102 |
| Msa0807610 | MtrunA17_Chr7g0245691 | 38.095 | 147 | 86 | 4 | 120 | 264 | 7 | 150 | 5.62e-25 | 101 |
| Msa0807610 | MtrunA17_Chr2g0291541 | 40.000 | 155 | 85 | 4 | 114 | 264 | 3 | 153 | 2.63e-24 | 99.8 |
| Msa0807610 | MtrunA17_Chr4g0010991 | 36.054 | 147 | 87 | 4 | 121 | 264 | 8 | 150 | 6.20e-24 | 98.6 |
| Msa0807610 | MtrunA17_Chr7g0275521 | 37.415 | 147 | 89 | 3 | 120 | 264 | 6 | 151 | 2.81e-21 | 91.3 |
| Msa0807610 | MtrunA17_Chr2g0282011 | 34.014 | 147 | 94 | 2 | 120 | 264 | 7 | 152 | 1.69e-19 | 86.7 |
| Msa0807610 | MtrunA17_Chr2g0281991 | 34.014 | 147 | 94 | 2 | 120 | 264 | 7 | 152 | 3.24e-18 | 82.8 |
| Msa0807610 | MtrunA17_Chr2g0282001 | 32.653 | 147 | 96 | 2 | 120 | 264 | 6 | 151 | 1.83e-16 | 77.8 |
| Msa0807610 | MtrunA17_Chr7g0245711 | 35.135 | 111 | 69 | 3 | 154 | 264 | 4 | 111 | 1.58e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807610 | AT4G35420.1 | 71.918 | 146 | 40 | 1 | 120 | 265 | 7 | 151 | 8.19e-70 | 218 |
| Msa0807610 | AT1G51410.1 | 51.678 | 149 | 70 | 2 | 114 | 261 | 2 | 149 | 1.14e-42 | 148 |
| Msa0807610 | AT1G09480.2 | 52.713 | 129 | 60 | 1 | 121 | 249 | 8 | 135 | 1.84e-42 | 147 |
| Msa0807610 | AT1G09480.1 | 52.713 | 129 | 60 | 1 | 121 | 249 | 55 | 182 | 2.86e-42 | 148 |
| Msa0807610 | AT1G09490.1 | 50.345 | 145 | 70 | 2 | 121 | 264 | 8 | 151 | 6.46e-42 | 146 |
| Msa0807610 | AT1G66800.1 | 48.611 | 144 | 70 | 2 | 121 | 264 | 8 | 147 | 1.73e-40 | 142 |
| Msa0807610 | AT1G09510.1 | 50.345 | 145 | 70 | 2 | 121 | 264 | 8 | 151 | 1.89e-40 | 142 |
| Msa0807610 | AT5G19440.1 | 51.034 | 145 | 69 | 2 | 121 | 264 | 10 | 153 | 2.37e-40 | 142 |
| Msa0807610 | AT1G09500.3 | 45.890 | 146 | 78 | 1 | 121 | 265 | 8 | 153 | 1.04e-39 | 139 |
| Msa0807610 | AT1G09500.1 | 45.890 | 146 | 78 | 1 | 121 | 265 | 8 | 153 | 1.95e-39 | 140 |
| Msa0807610 | AT5G42800.1 | 43.333 | 150 | 82 | 3 | 115 | 264 | 2 | 148 | 1.60e-33 | 125 |
| Msa0807610 | AT2G33590.1 | 44.828 | 145 | 78 | 2 | 120 | 264 | 8 | 150 | 2.08e-31 | 119 |
| Msa0807610 | AT1G61720.1 | 40.260 | 154 | 88 | 3 | 111 | 264 | 5 | 154 | 4.21e-31 | 118 |
| Msa0807610 | AT4G27250.2 | 43.704 | 135 | 66 | 2 | 122 | 249 | 14 | 145 | 6.56e-31 | 117 |
| Msa0807610 | AT4G27250.1 | 43.704 | 135 | 66 | 2 | 122 | 249 | 14 | 145 | 8.62e-31 | 117 |
| Msa0807610 | AT1G68540.1 | 41.958 | 143 | 82 | 1 | 123 | 264 | 6 | 148 | 1.62e-30 | 116 |
| Msa0807610 | AT5G58490.1 | 41.558 | 154 | 81 | 3 | 116 | 265 | 4 | 152 | 6.36e-30 | 114 |
| Msa0807610 | AT2G33600.1 | 49.541 | 109 | 54 | 1 | 120 | 228 | 8 | 115 | 6.76e-29 | 112 |
| Msa0807610 | AT1G25460.1 | 42.657 | 143 | 79 | 3 | 123 | 264 | 6 | 146 | 4.53e-28 | 109 |
| Msa0807610 | AT2G02400.1 | 39.583 | 144 | 84 | 2 | 121 | 264 | 6 | 146 | 1.87e-27 | 108 |
| Msa0807610 | AT1G15950.6 | 44.444 | 144 | 73 | 4 | 121 | 264 | 13 | 149 | 2.62e-27 | 107 |
| Msa0807610 | AT1G15950.5 | 44.444 | 144 | 73 | 4 | 121 | 264 | 13 | 149 | 2.94e-27 | 107 |
| Msa0807610 | AT1G15950.3 | 44.444 | 144 | 73 | 4 | 121 | 264 | 13 | 149 | 4.01e-27 | 107 |
| Msa0807610 | AT1G15950.1 | 44.444 | 144 | 73 | 4 | 121 | 264 | 13 | 149 | 4.01e-27 | 107 |
| Msa0807610 | AT1G15950.4 | 44.444 | 144 | 73 | 4 | 121 | 264 | 13 | 149 | 4.70e-27 | 106 |
| Msa0807610 | AT1G15950.2 | 44.444 | 144 | 73 | 4 | 121 | 264 | 13 | 149 | 6.73e-27 | 107 |
| Msa0807610 | AT1G76470.1 | 49.107 | 112 | 56 | 1 | 117 | 228 | 3 | 113 | 1.24e-26 | 106 |
| Msa0807610 | AT1G09490.2 | 46.847 | 111 | 57 | 2 | 155 | 264 | 11 | 120 | 8.78e-26 | 103 |
| Msa0807610 | AT2G45400.4 | 41.026 | 156 | 82 | 5 | 115 | 264 | 34 | 185 | 1.34e-25 | 102 |
| Msa0807610 | AT2G45400.2 | 42.000 | 150 | 77 | 5 | 121 | 264 | 40 | 185 | 6.28e-25 | 101 |
| Msa0807610 | AT2G45400.1 | 42.000 | 150 | 77 | 5 | 121 | 264 | 40 | 185 | 7.42e-25 | 102 |
| Msa0807610 | AT1G80820.2 | 42.361 | 144 | 76 | 4 | 121 | 264 | 8 | 144 | 8.77e-25 | 100 |
| Msa0807610 | AT1G80820.1 | 42.361 | 144 | 76 | 4 | 121 | 264 | 8 | 144 | 1.86e-24 | 100 |
| Msa0807610 | AT1G09500.2 | 42.857 | 112 | 63 | 1 | 155 | 265 | 8 | 119 | 1.21e-23 | 97.4 |
| Msa0807610 | AT2G17990.2 | 44.330 | 97 | 47 | 3 | 1 | 90 | 1 | 97 | 1.69e-15 | 75.5 |
| Msa0807610 | AT2G17990.1 | 44.330 | 97 | 47 | 3 | 1 | 90 | 1 | 97 | 2.75e-15 | 75.1 |
| Msa0807610 | AT2G17990.3 | 44.330 | 97 | 47 | 3 | 1 | 90 | 11 | 107 | 3.23e-15 | 74.7 |
| Msa0807610 | AT2G23910.1 | 29.371 | 143 | 97 | 2 | 122 | 264 | 11 | 149 | 1.77e-13 | 69.3 |
| Msa0807610 | AT2G23910.2 | 29.371 | 143 | 97 | 2 | 122 | 264 | 11 | 149 | 1.94e-13 | 68.9 |
| Msa0807610 | AT2G23910.3 | 29.371 | 143 | 97 | 2 | 122 | 264 | 11 | 149 | 1.96e-13 | 68.9 |
| Msa0807610 | AT2G45400.3 | 37.069 | 116 | 65 | 4 | 153 | 264 | 17 | 128 | 1.75e-12 | 66.6 |
Find 59 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGAACAATTAGAGATTT+AGG | 0.177370 | 5_3:+29403464 | Msa0807610:CDS |
| TAGCTTCGACAATGCGATTA+TGG | 0.197247 | 5_3:+29403666 | Msa0807610:CDS |
| ACTAGTCCAAGCTGATTTAA+TGG | 0.254779 | 5_3:+29403636 | Msa0807610:CDS |
| GACTCGTCTATTGGTATGTT+TGG | 0.328808 | 5_3:-29404043 | None:intergenic |
| AGGATCATTTGATATATGAT+TGG | 0.357612 | 5_3:-29403725 | None:intergenic |
| CAAAATACAGGCAGAAATCT+TGG | 0.360481 | 5_3:+29403904 | Msa0807610:intron |
| GAACACAAAGTATGTGTAAC+AGG | 0.361376 | 5_3:+29403380 | Msa0807610:CDS |
| TTGTCTGGATATCATGTCAT+TGG | 0.385389 | 5_3:+29403446 | Msa0807610:CDS |
| AGCTTCGACAATGCGATTAT+GGG | 0.388369 | 5_3:+29403667 | Msa0807610:CDS |
| GCAATACATCAACTTGAGAT+TGG | 0.395020 | 5_3:-29402401 | None:intergenic |
| GATCGTATTCAACTTTGAAC+AGG | 0.398257 | 5_3:+29402287 | Msa0807610:five_prime_UTR |
| CTCCAAGATGACTCGTCTAT+TGG | 0.402699 | 5_3:-29404052 | None:intergenic |
| AGCATAAAGTTGAACATGTA+TGG | 0.403454 | 5_3:+29403584 | Msa0807610:CDS |
| GTCGGGTTTGAAGTCTTTGT+CGG | 0.406613 | 5_3:+29402338 | Msa0807610:CDS |
| ATTCAACTTTGAACAGGAAA+TGG | 0.409980 | 5_3:+29402293 | Msa0807610:exon |
| GGATCATTTGATATATGATT+GGG | 0.413478 | 5_3:-29403724 | None:intergenic |
| GTATGTGTAACAGGAGCTTC+AGG | 0.422762 | 5_3:+29403389 | Msa0807610:CDS |
| TGAGATCAAGGCGAGTATAC+AGG | 0.423974 | 5_3:+29402437 | Msa0807610:CDS |
| ACTCTGAATCGGTGCTCAAT+TGG | 0.442937 | 5_3:+29402597 | Msa0807610:CDS |
| TTTCTTCCATTAAATCAGCT+TGG | 0.450929 | 5_3:-29403642 | None:intergenic |
| AGTTGAACATGTATGGAAGT+TGG | 0.455011 | 5_3:+29403591 | Msa0807610:CDS |
| AACACAACGCGAACAAGGGC+TGG | 0.461980 | 5_3:-29403977 | None:intergenic |
| TACCAATAGACGAGTCATCT+TGG | 0.465845 | 5_3:+29404050 | Msa0807610:CDS |
| TTTGATATATGATTGGGTAC+TGG | 0.478192 | 5_3:-29403718 | None:intergenic |
| TCGGGTTTGAAGTCTTTGTC+GGG | 0.479321 | 5_3:+29402339 | Msa0807610:CDS |
| GGTGAAGATATTGCAATGTC+GGG | 0.484131 | 5_3:+29402321 | Msa0807610:CDS |
| CGGCTAACACAACGCGAACA+AGG | 0.491726 | 5_3:-29403982 | None:intergenic |
| CAAGGCGAGTATACAGGGTT+CGG | 0.495330 | 5_3:+29402443 | Msa0807610:CDS |
| GCTCAACTCACTCACTCAAT+CGG | 0.496589 | 5_3:+29402651 | Msa0807610:CDS |
| TTTAGCGTACCTTGGACCGC+TGG | 0.513714 | 5_3:-29403929 | None:intergenic |
| ACAACACATTTAGCGTACCT+TGG | 0.521196 | 5_3:-29403937 | None:intergenic |
| TCATATATCAAATGATCCTA+AGG | 0.522536 | 5_3:+29403729 | Msa0807610:CDS |
| AGAAAAGGTTAATGAGATCA+AGG | 0.523536 | 5_3:+29402425 | Msa0807610:intron |
| TCATGGTCAACTCACTCAAT+CGG | 0.527534 | 5_3:+29402627 | Msa0807610:CDS |
| AAAGTTGAAAGCTAGAATCA+TGG | 0.527633 | 5_3:+29402539 | Msa0807610:CDS |
| TCTTGTGATACGTGGAAGGA+AGG | 0.528893 | 5_3:+29402366 | Msa0807610:CDS |
| GGGTGAAGATATTGCAATGT+CGG | 0.539200 | 5_3:+29402320 | Msa0807610:CDS |
| GCTCAATTGGTGCTGAATCA+TGG | 0.556118 | 5_3:+29402610 | Msa0807610:CDS |
| CTTTGAACAGGAAATGGCGG+CGG | 0.565017 | 5_3:+29402299 | Msa0807610:exon |
| CGTGTGGAATCACTCTGAAT+CGG | 0.565810 | 5_3:+29402586 | Msa0807610:CDS |
| GAGATCAAGGCGAGTATACA+GGG | 0.570374 | 5_3:+29402438 | Msa0807610:CDS |
| ATCTTGGAACCAGCGGTCCA+AGG | 0.581499 | 5_3:+29403920 | Msa0807610:CDS |
| ACTAGTTCGAGTCTTTCTGT+TGG | 0.581772 | 5_3:-29403619 | None:intergenic |
| CGGGTCAATCTTGTGATACG+TGG | 0.590071 | 5_3:+29402358 | Msa0807610:CDS |
| CTTGTGATACGTGGAAGGAA+GGG | 0.592666 | 5_3:+29402367 | Msa0807610:CDS |
| TTTGAACAGGAAATGGCGGC+GGG | 0.595048 | 5_3:+29402300 | Msa0807610:exon |
| AATGCGATTATGGGATGCAA+AGG | 0.600616 | 5_3:+29403676 | Msa0807610:CDS |
| GGCTAACACAACGCGAACAA+GGG | 0.604067 | 5_3:-29403981 | None:intergenic |
| TGATACGTGGAAGGAAGGGA+TGG | 0.610710 | 5_3:+29402371 | Msa0807610:CDS |
| TCAATCTTGTGATACGTGGA+AGG | 0.612583 | 5_3:+29402362 | Msa0807610:CDS |
| TGAACATGTATGGAAGTTGG+AGG | 0.617606 | 5_3:+29403594 | Msa0807610:CDS |
| CATTTAGCTCATACGTCGTG+TGG | 0.618137 | 5_3:+29402570 | Msa0807610:CDS |
| GGCGAGTATACAGGGTTCGG+AGG | 0.626173 | 5_3:+29402446 | Msa0807610:CDS |
| CAACTTTGAACAGGAAATGG+CGG | 0.641854 | 5_3:+29402296 | Msa0807610:exon |
| TATATGATTGGGTACTGGAG+AGG | 0.647630 | 5_3:-29403713 | None:intergenic |
| GGCAGAAATCTTGGAACCAG+CGG | 0.649586 | 5_3:+29403913 | Msa0807610:intron |
| GAACATGTATGGAAGTTGGA+GGG | 0.668376 | 5_3:+29403595 | Msa0807610:CDS |
| CACGACGTATGAGCTAAATG+TGG | 0.682059 | 5_3:-29402567 | None:intergenic |
| ACTAACAGCTGAAGATGACG+CGG | 0.706152 | 5_3:-29404002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCATTTATATTTTTCAT+AGG | + | chr5_3:29403758-29403777 | Msa0807610:intron | 10.0% |
| !!! | ATTTCATTTATATTTTTCAT+AGG | + | chr5_3:29403758-29403777 | Msa0807610:intron | 10.0% |
| !! | CAAAAAACTAAAATAATACT+TGG | - | chr5_3:29403017-29403036 | None:intergenic | 15.0% |
| !!! | TATTTTGTATTGTTAATTCT+AGG | + | chr5_3:29403262-29403281 | Msa0807610:intron | 15.0% |
| !!! | ATATTTTTATATATACTTGC+AGG | + | chr5_3:29403556-29403575 | Msa0807610:intron | 15.0% |
| !! | CAAAAAACTAAAATAATACT+TGG | - | chr5_3:29403017-29403036 | None:intergenic | 15.0% |
| !!! | TATTTTGTATTGTTAATTCT+AGG | + | chr5_3:29403262-29403281 | Msa0807610:intron | 15.0% |
| !!! | ATATTTTTATATATACTTGC+AGG | + | chr5_3:29403556-29403575 | Msa0807610:intron | 15.0% |
| !!! | TTTTAATCATGTGTGATTTA+TGG | + | chr5_3:29402846-29402865 | Msa0807610:intron | 20.0% |
| !!! | ACTTCAATCTATTATTTTGA+AGG | + | chr5_3:29403194-29403213 | Msa0807610:intron | 20.0% |
| !! | ATATATAAAGTGAATCAGTT+GGG | - | chr5_3:29403237-29403256 | None:intergenic | 20.0% |
| !!! | TTTTAATCATGTGTGATTTA+TGG | + | chr5_3:29402846-29402865 | Msa0807610:intron | 20.0% |
| !!! | ACTTCAATCTATTATTTTGA+AGG | + | chr5_3:29403194-29403213 | Msa0807610:intron | 20.0% |
| !! | ATATATAAAGTGAATCAGTT+GGG | - | chr5_3:29403237-29403256 | None:intergenic | 20.0% |
| ! | AAGAAATTATAACCTGGAAA+AGG | - | chr5_3:29402737-29402756 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAATTATAACC+TGG | - | chr5_3:29402743-29402762 | None:intergenic | 25.0% |
| !! | GATTTATGGACTAAAATGAT+CGG | + | chr5_3:29402860-29402879 | Msa0807610:intron | 25.0% |
| !! | TAACTTGTCCAAAATGTTAA+TGG | + | chr5_3:29402947-29402966 | Msa0807610:intron | 25.0% |
| ! | TTAAAAATTGCCAGACTATT+TGG | + | chr5_3:29403073-29403092 | Msa0807610:intron | 25.0% |
| !! | GTAGAAACAAAAATGAGTTT+TGG | + | chr5_3:29403129-29403148 | Msa0807610:intron | 25.0% |
| ! | CATATATAAAGTGAATCAGT+TGG | - | chr5_3:29403238-29403257 | None:intergenic | 25.0% |
| ! | ATCTTAAGTACAAGTTAACA+AGG | - | chr5_3:29403357-29403376 | None:intergenic | 25.0% |
| !!! | GTTAACTTGTACTTAAGATA+TGG | + | chr5_3:29403358-29403377 | Msa0807610:intron | 25.0% |
| ! | ATTGGAACAATTAGAGATTT+AGG | + | chr5_3:29403464-29403483 | Msa0807610:CDS | 25.0% |
| ! | GTGAAAAGTGAAAATACATT+TGG | - | chr5_3:29403510-29403529 | None:intergenic | 25.0% |
| ! | GGATCATTTGATATATGATT+GGG | - | chr5_3:29403727-29403746 | None:intergenic | 25.0% |
| ! | AGGATCATTTGATATATGAT+TGG | - | chr5_3:29403728-29403747 | None:intergenic | 25.0% |
| ! | TCATATATCAAATGATCCTA+AGG | + | chr5_3:29403729-29403748 | Msa0807610:CDS | 25.0% |
| ! | TAAATGAAATATCACACCTT+AGG | - | chr5_3:29403748-29403767 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTCCAAAATAC+AGG | + | chr5_3:29403892-29403911 | Msa0807610:intron | 25.0% |
| ! | AAGAAATTATAACCTGGAAA+AGG | - | chr5_3:29402737-29402756 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAATTATAACC+TGG | - | chr5_3:29402743-29402762 | None:intergenic | 25.0% |
| !! | GATTTATGGACTAAAATGAT+CGG | + | chr5_3:29402860-29402879 | Msa0807610:intron | 25.0% |
| !! | TAACTTGTCCAAAATGTTAA+TGG | + | chr5_3:29402947-29402966 | Msa0807610:intron | 25.0% |
| ! | TTAAAAATTGCCAGACTATT+TGG | + | chr5_3:29403073-29403092 | Msa0807610:intron | 25.0% |
| !! | GTAGAAACAAAAATGAGTTT+TGG | + | chr5_3:29403129-29403148 | Msa0807610:intron | 25.0% |
| ! | CATATATAAAGTGAATCAGT+TGG | - | chr5_3:29403238-29403257 | None:intergenic | 25.0% |
| ! | ATCTTAAGTACAAGTTAACA+AGG | - | chr5_3:29403357-29403376 | None:intergenic | 25.0% |
| !!! | GTTAACTTGTACTTAAGATA+TGG | + | chr5_3:29403358-29403377 | Msa0807610:intron | 25.0% |
| ! | ATTGGAACAATTAGAGATTT+AGG | + | chr5_3:29403464-29403483 | Msa0807610:CDS | 25.0% |
| ! | GTGAAAAGTGAAAATACATT+TGG | - | chr5_3:29403510-29403529 | None:intergenic | 25.0% |
| ! | GGATCATTTGATATATGATT+GGG | - | chr5_3:29403727-29403746 | None:intergenic | 25.0% |
| ! | AGGATCATTTGATATATGAT+TGG | - | chr5_3:29403728-29403747 | None:intergenic | 25.0% |
| ! | TCATATATCAAATGATCCTA+AGG | + | chr5_3:29403729-29403748 | Msa0807610:CDS | 25.0% |
| ! | TAAATGAAATATCACACCTT+AGG | - | chr5_3:29403748-29403767 | None:intergenic | 25.0% |
| !! | TCAATTTTTGTCCAAAATAC+AGG | + | chr5_3:29403892-29403911 | Msa0807610:intron | 25.0% |
| ATTCAACTTTGAACAGGAAA+TGG | + | chr5_3:29402293-29402312 | Msa0807610:exon | 30.0% | |
| ! | AGTTGATGTATTGCAAGAAA+AGG | + | chr5_3:29402410-29402429 | Msa0807610:intron | 30.0% |
| AGAAAAGGTTAATGAGATCA+AGG | + | chr5_3:29402425-29402444 | Msa0807610:intron | 30.0% | |
| AGACTCAAAAAAGGAATTAG+AGG | + | chr5_3:29402470-29402489 | Msa0807610:CDS | 30.0% | |
| ! | AAAAGGAATTAGAGGTTTTG+TGG | + | chr5_3:29402478-29402497 | Msa0807610:CDS | 30.0% |
| AAAGTTGAAAGCTAGAATCA+TGG | + | chr5_3:29402539-29402558 | Msa0807610:CDS | 30.0% | |
| !! | AATCGGTGTTATTTCTGAAT+CGG | + | chr5_3:29402668-29402687 | Msa0807610:intron | 30.0% |
| ! | ATCGGATTTGTTTAAAGTAG+TGG | + | chr5_3:29402878-29402897 | Msa0807610:intron | 30.0% |
| !! | AAGTTAAACAAGTTTTGGTC+TGG | - | chr5_3:29402933-29402952 | None:intergenic | 30.0% |
| ! | TGGACAAGTTAAACAAGTTT+TGG | - | chr5_3:29402938-29402957 | None:intergenic | 30.0% |
| ! | GAAATCGTCCATTAACATTT+TGG | - | chr5_3:29402958-29402977 | None:intergenic | 30.0% |
| GTTACTGTTATATAATGCTC+TGG | + | chr5_3:29403044-29403063 | Msa0807610:intron | 30.0% | |
| GGAAAATGCAGTCTAAAAAT+TGG | + | chr5_3:29403163-29403182 | Msa0807610:intron | 30.0% | |
| !! | TTTATTTTCATGTTCGTTCC+TGG | + | chr5_3:29403291-29403310 | Msa0807610:intron | 30.0% |
| ! | TTATTTTCATGTTCGTTCCT+GGG | + | chr5_3:29403292-29403311 | Msa0807610:intron | 30.0% |
| ! | TAACAAGGCAAATGCAATTT+TGG | - | chr5_3:29403342-29403361 | None:intergenic | 30.0% |
| AGCATAAAGTTGAACATGTA+TGG | + | chr5_3:29403584-29403603 | Msa0807610:CDS | 30.0% | |
| TTTCTTCCATTAAATCAGCT+TGG | - | chr5_3:29403645-29403664 | None:intergenic | 30.0% | |
| TTTGATATATGATTGGGTAC+TGG | - | chr5_3:29403721-29403740 | None:intergenic | 30.0% | |
| TGATTAATGCATGAGCTTAT+AGG | - | chr5_3:29403800-29403819 | None:intergenic | 30.0% | |
| TAATCAAAATCCTCACATCA+TGG | + | chr5_3:29403814-29403833 | Msa0807610:intron | 30.0% | |
| ATTCAACTTTGAACAGGAAA+TGG | + | chr5_3:29402293-29402312 | Msa0807610:exon | 30.0% | |
| ! | AGTTGATGTATTGCAAGAAA+AGG | + | chr5_3:29402410-29402429 | Msa0807610:intron | 30.0% |
| AGAAAAGGTTAATGAGATCA+AGG | + | chr5_3:29402425-29402444 | Msa0807610:intron | 30.0% | |
| AGACTCAAAAAAGGAATTAG+AGG | + | chr5_3:29402470-29402489 | Msa0807610:CDS | 30.0% | |
| ! | AAAAGGAATTAGAGGTTTTG+TGG | + | chr5_3:29402478-29402497 | Msa0807610:CDS | 30.0% |
| AAAGTTGAAAGCTAGAATCA+TGG | + | chr5_3:29402539-29402558 | Msa0807610:CDS | 30.0% | |
| !! | AATCGGTGTTATTTCTGAAT+CGG | + | chr5_3:29402668-29402687 | Msa0807610:intron | 30.0% |
| ! | ATCGGATTTGTTTAAAGTAG+TGG | + | chr5_3:29402878-29402897 | Msa0807610:intron | 30.0% |
| !! | AAGTTAAACAAGTTTTGGTC+TGG | - | chr5_3:29402933-29402952 | None:intergenic | 30.0% |
| ! | TGGACAAGTTAAACAAGTTT+TGG | - | chr5_3:29402938-29402957 | None:intergenic | 30.0% |
| ! | GAAATCGTCCATTAACATTT+TGG | - | chr5_3:29402958-29402977 | None:intergenic | 30.0% |
| GTTACTGTTATATAATGCTC+TGG | + | chr5_3:29403044-29403063 | Msa0807610:intron | 30.0% | |
| GGAAAATGCAGTCTAAAAAT+TGG | + | chr5_3:29403163-29403182 | Msa0807610:intron | 30.0% | |
| !! | TTTATTTTCATGTTCGTTCC+TGG | + | chr5_3:29403291-29403310 | Msa0807610:intron | 30.0% |
| ! | TTATTTTCATGTTCGTTCCT+GGG | + | chr5_3:29403292-29403311 | Msa0807610:intron | 30.0% |
| ! | TAACAAGGCAAATGCAATTT+TGG | - | chr5_3:29403342-29403361 | None:intergenic | 30.0% |
| AGCATAAAGTTGAACATGTA+TGG | + | chr5_3:29403584-29403603 | Msa0807610:CDS | 30.0% | |
| TTTCTTCCATTAAATCAGCT+TGG | - | chr5_3:29403645-29403664 | None:intergenic | 30.0% | |
| TTTGATATATGATTGGGTAC+TGG | - | chr5_3:29403721-29403740 | None:intergenic | 30.0% | |
| TGATTAATGCATGAGCTTAT+AGG | - | chr5_3:29403800-29403819 | None:intergenic | 30.0% | |
| TAATCAAAATCCTCACATCA+TGG | + | chr5_3:29403814-29403833 | Msa0807610:intron | 30.0% | |
| GATCGTATTCAACTTTGAAC+AGG | + | chr5_3:29402287-29402306 | Msa0807610:five_prime_UTR | 35.0% | |
| GCAATACATCAACTTGAGAT+TGG | - | chr5_3:29402404-29402423 | None:intergenic | 35.0% | |
| !! | GGTGTTATTTCTGGTTAGTT+CGG | + | chr5_3:29402709-29402728 | Msa0807610:intron | 35.0% |
| ! | GGATTTGTTTAAAGTAGTGG+AGG | + | chr5_3:29402881-29402900 | Msa0807610:intron | 35.0% |
| !! | AAACAAGTTTTGGTCTGGTT+GGG | - | chr5_3:29402928-29402947 | None:intergenic | 35.0% |
| !! | TAAACAAGTTTTGGTCTGGT+TGG | - | chr5_3:29402929-29402948 | None:intergenic | 35.0% |
| CTTCATGTTGTGTACTAAGT+TGG | + | chr5_3:29402977-29402996 | Msa0807610:intron | 35.0% | |
| ! | TGTGTACTAAGTTGGAGATT+TGG | + | chr5_3:29402985-29403004 | Msa0807610:intron | 35.0% |
| AAATTGCCAGACTATTTGGT+AGG | + | chr5_3:29403077-29403096 | Msa0807610:intron | 35.0% | |
| !!! | TGAGTTTTGGACTCAAACAA+TGG | + | chr5_3:29403142-29403161 | Msa0807610:intron | 35.0% |
| GAACACAAAGTATGTGTAAC+AGG | + | chr5_3:29403380-29403399 | Msa0807610:CDS | 35.0% | |
| ! | ATGAAACGACTTCTTTTGTC+TGG | + | chr5_3:29403431-29403450 | Msa0807610:CDS | 35.0% |
| TTGTCTGGATATCATGTCAT+TGG | + | chr5_3:29403446-29403465 | Msa0807610:CDS | 35.0% | |
| AGTTGAACATGTATGGAAGT+TGG | + | chr5_3:29403591-29403610 | Msa0807610:CDS | 35.0% | |
| ! | ACTAGTCCAAGCTGATTTAA+TGG | + | chr5_3:29403636-29403655 | Msa0807610:CDS | 35.0% |
| ! | CAAGATTTCTGCCTGTATTT+TGG | - | chr5_3:29403906-29403925 | None:intergenic | 35.0% |
| CAAAATACAGGCAGAAATCT+TGG | + | chr5_3:29403904-29403923 | Msa0807610:intron | 35.0% | |
| GATCGTATTCAACTTTGAAC+AGG | + | chr5_3:29402287-29402306 | Msa0807610:five_prime_UTR | 35.0% | |
| GCAATACATCAACTTGAGAT+TGG | - | chr5_3:29402404-29402423 | None:intergenic | 35.0% | |
| !! | GGTGTTATTTCTGGTTAGTT+CGG | + | chr5_3:29402709-29402728 | Msa0807610:intron | 35.0% |
| ! | GGATTTGTTTAAAGTAGTGG+AGG | + | chr5_3:29402881-29402900 | Msa0807610:intron | 35.0% |
| !! | AAACAAGTTTTGGTCTGGTT+GGG | - | chr5_3:29402928-29402947 | None:intergenic | 35.0% |
| !! | TAAACAAGTTTTGGTCTGGT+TGG | - | chr5_3:29402929-29402948 | None:intergenic | 35.0% |
| CTTCATGTTGTGTACTAAGT+TGG | + | chr5_3:29402977-29402996 | Msa0807610:intron | 35.0% | |
| ! | TGTGTACTAAGTTGGAGATT+TGG | + | chr5_3:29402985-29403004 | Msa0807610:intron | 35.0% |
| AAATTGCCAGACTATTTGGT+AGG | + | chr5_3:29403077-29403096 | Msa0807610:intron | 35.0% | |
| !!! | TGAGTTTTGGACTCAAACAA+TGG | + | chr5_3:29403142-29403161 | Msa0807610:intron | 35.0% |
| GAACACAAAGTATGTGTAAC+AGG | + | chr5_3:29403380-29403399 | Msa0807610:CDS | 35.0% | |
| ! | ATGAAACGACTTCTTTTGTC+TGG | + | chr5_3:29403431-29403450 | Msa0807610:CDS | 35.0% |
| TTGTCTGGATATCATGTCAT+TGG | + | chr5_3:29403446-29403465 | Msa0807610:CDS | 35.0% | |
| AGTTGAACATGTATGGAAGT+TGG | + | chr5_3:29403591-29403610 | Msa0807610:CDS | 35.0% | |
| ! | ACTAGTCCAAGCTGATTTAA+TGG | + | chr5_3:29403636-29403655 | Msa0807610:CDS | 35.0% |
| ! | CAAGATTTCTGCCTGTATTT+TGG | - | chr5_3:29403906-29403925 | None:intergenic | 35.0% |
| CAAAATACAGGCAGAAATCT+TGG | + | chr5_3:29403904-29403923 | Msa0807610:intron | 35.0% | |
| CAACTTTGAACAGGAAATGG+CGG | + | chr5_3:29402296-29402315 | Msa0807610:exon | 40.0% | |
| GGGTGAAGATATTGCAATGT+CGG | + | chr5_3:29402320-29402339 | Msa0807610:CDS | 40.0% | |
| GGTGAAGATATTGCAATGTC+GGG | + | chr5_3:29402321-29402340 | Msa0807610:CDS | 40.0% | |
| TCAATCTTGTGATACGTGGA+AGG | + | chr5_3:29402362-29402381 | Msa0807610:CDS | 40.0% | |
| TTCGGAGGAAGACTCAAAAA+AGG | + | chr5_3:29402461-29402480 | Msa0807610:CDS | 40.0% | |
| TCATGGTCAACTCACTCAAT+CGG | + | chr5_3:29402627-29402646 | Msa0807610:CDS | 40.0% | |
| !! | CACTCAATCGGTGTTATTTC+TGG | + | chr5_3:29402663-29402682 | Msa0807610:intron | 40.0% |
| TACAACCTCTTACTCGACAA+GGG | - | chr5_3:29403112-29403131 | None:intergenic | 40.0% | |
| TGAACATGTATGGAAGTTGG+AGG | + | chr5_3:29403594-29403613 | Msa0807610:CDS | 40.0% | |
| GAACATGTATGGAAGTTGGA+GGG | + | chr5_3:29403595-29403614 | Msa0807610:CDS | 40.0% | |
| ACTAGTTCGAGTCTTTCTGT+TGG | - | chr5_3:29403622-29403641 | None:intergenic | 40.0% | |
| TAGCTTCGACAATGCGATTA+TGG | + | chr5_3:29403666-29403685 | Msa0807610:CDS | 40.0% | |
| AGCTTCGACAATGCGATTAT+GGG | + | chr5_3:29403667-29403686 | Msa0807610:CDS | 40.0% | |
| AATGCGATTATGGGATGCAA+AGG | + | chr5_3:29403676-29403695 | Msa0807610:CDS | 40.0% | |
| !! | TATATGATTGGGTACTGGAG+AGG | - | chr5_3:29403716-29403735 | None:intergenic | 40.0% |
| TGTATAGTCTCCATGATGTG+AGG | - | chr5_3:29403827-29403846 | None:intergenic | 40.0% | |
| ACAACACATTTAGCGTACCT+TGG | - | chr5_3:29403940-29403959 | None:intergenic | 40.0% | |
| GACTCGTCTATTGGTATGTT+TGG | - | chr5_3:29404046-29404065 | None:intergenic | 40.0% | |
| TACCAATAGACGAGTCATCT+TGG | + | chr5_3:29404050-29404069 | Msa0807610:CDS | 40.0% | |
| CAACTTTGAACAGGAAATGG+CGG | + | chr5_3:29402296-29402315 | Msa0807610:exon | 40.0% | |
| GGGTGAAGATATTGCAATGT+CGG | + | chr5_3:29402320-29402339 | Msa0807610:CDS | 40.0% | |
| GGTGAAGATATTGCAATGTC+GGG | + | chr5_3:29402321-29402340 | Msa0807610:CDS | 40.0% | |
| TCAATCTTGTGATACGTGGA+AGG | + | chr5_3:29402362-29402381 | Msa0807610:CDS | 40.0% | |
| TTCGGAGGAAGACTCAAAAA+AGG | + | chr5_3:29402461-29402480 | Msa0807610:CDS | 40.0% | |
| TCATGGTCAACTCACTCAAT+CGG | + | chr5_3:29402627-29402646 | Msa0807610:CDS | 40.0% | |
| !! | CACTCAATCGGTGTTATTTC+TGG | + | chr5_3:29402663-29402682 | Msa0807610:intron | 40.0% |
| TACAACCTCTTACTCGACAA+GGG | - | chr5_3:29403112-29403131 | None:intergenic | 40.0% | |
| TGAACATGTATGGAAGTTGG+AGG | + | chr5_3:29403594-29403613 | Msa0807610:CDS | 40.0% | |
| GAACATGTATGGAAGTTGGA+GGG | + | chr5_3:29403595-29403614 | Msa0807610:CDS | 40.0% | |
| ACTAGTTCGAGTCTTTCTGT+TGG | - | chr5_3:29403622-29403641 | None:intergenic | 40.0% | |
| TAGCTTCGACAATGCGATTA+TGG | + | chr5_3:29403666-29403685 | Msa0807610:CDS | 40.0% | |
| AGCTTCGACAATGCGATTAT+GGG | + | chr5_3:29403667-29403686 | Msa0807610:CDS | 40.0% | |
| AATGCGATTATGGGATGCAA+AGG | + | chr5_3:29403676-29403695 | Msa0807610:CDS | 40.0% | |
| !! | TATATGATTGGGTACTGGAG+AGG | - | chr5_3:29403716-29403735 | None:intergenic | 40.0% |
| TGTATAGTCTCCATGATGTG+AGG | - | chr5_3:29403827-29403846 | None:intergenic | 40.0% | |
| ACAACACATTTAGCGTACCT+TGG | - | chr5_3:29403940-29403959 | None:intergenic | 40.0% | |
| GACTCGTCTATTGGTATGTT+TGG | - | chr5_3:29404046-29404065 | None:intergenic | 40.0% | |
| TACCAATAGACGAGTCATCT+TGG | + | chr5_3:29404050-29404069 | Msa0807610:CDS | 40.0% | |
| ! | GTCGGGTTTGAAGTCTTTGT+CGG | + | chr5_3:29402338-29402357 | Msa0807610:CDS | 45.0% |
| ! | TCGGGTTTGAAGTCTTTGTC+GGG | + | chr5_3:29402339-29402358 | Msa0807610:CDS | 45.0% |
| TCTTGTGATACGTGGAAGGA+AGG | + | chr5_3:29402366-29402385 | Msa0807610:CDS | 45.0% | |
| CTTGTGATACGTGGAAGGAA+GGG | + | chr5_3:29402367-29402386 | Msa0807610:CDS | 45.0% | |
| TGAGATCAAGGCGAGTATAC+AGG | + | chr5_3:29402437-29402456 | Msa0807610:CDS | 45.0% | |
| GAGATCAAGGCGAGTATACA+GGG | + | chr5_3:29402438-29402457 | Msa0807610:CDS | 45.0% | |
| CACGACGTATGAGCTAAATG+TGG | - | chr5_3:29402570-29402589 | None:intergenic | 45.0% | |
| ! | CATTTAGCTCATACGTCGTG+TGG | + | chr5_3:29402570-29402589 | Msa0807610:CDS | 45.0% |
| CGTGTGGAATCACTCTGAAT+CGG | + | chr5_3:29402586-29402605 | Msa0807610:CDS | 45.0% | |
| ! | ACTCTGAATCGGTGCTCAAT+TGG | + | chr5_3:29402597-29402616 | Msa0807610:CDS | 45.0% |
| !! | GCTCAATTGGTGCTGAATCA+TGG | + | chr5_3:29402610-29402629 | Msa0807610:CDS | 45.0% |
| GCTCAACTCACTCACTCAAT+CGG | + | chr5_3:29402651-29402670 | Msa0807610:CDS | 45.0% | |
| ! | GTTAGTTCGGTTCCTTTTCC+AGG | + | chr5_3:29402722-29402741 | Msa0807610:intron | 45.0% |
| GGCATTCCTACCAAATAGTC+TGG | - | chr5_3:29403086-29403105 | None:intergenic | 45.0% | |
| CTACAACCTCTTACTCGACA+AGG | - | chr5_3:29403113-29403132 | None:intergenic | 45.0% | |
| GTATGTGTAACAGGAGCTTC+AGG | + | chr5_3:29403389-29403408 | Msa0807610:CDS | 45.0% | |
| ! | AACAGGAGCTTCAGGCTTTT+TGG | + | chr5_3:29403397-29403416 | Msa0807610:CDS | 45.0% |
| !!! | CTTCAGGCTTTTTGGCTTCT+TGG | + | chr5_3:29403405-29403424 | Msa0807610:CDS | 45.0% |
| ACTAACAGCTGAAGATGACG+CGG | - | chr5_3:29404005-29404024 | None:intergenic | 45.0% | |
| CTCCAAGATGACTCGTCTAT+TGG | - | chr5_3:29404055-29404074 | None:intergenic | 45.0% | |
| ! | GTCGGGTTTGAAGTCTTTGT+CGG | + | chr5_3:29402338-29402357 | Msa0807610:CDS | 45.0% |
| ! | TCGGGTTTGAAGTCTTTGTC+GGG | + | chr5_3:29402339-29402358 | Msa0807610:CDS | 45.0% |
| TCTTGTGATACGTGGAAGGA+AGG | + | chr5_3:29402366-29402385 | Msa0807610:CDS | 45.0% | |
| CTTGTGATACGTGGAAGGAA+GGG | + | chr5_3:29402367-29402386 | Msa0807610:CDS | 45.0% | |
| TGAGATCAAGGCGAGTATAC+AGG | + | chr5_3:29402437-29402456 | Msa0807610:CDS | 45.0% | |
| GAGATCAAGGCGAGTATACA+GGG | + | chr5_3:29402438-29402457 | Msa0807610:CDS | 45.0% | |
| CACGACGTATGAGCTAAATG+TGG | - | chr5_3:29402570-29402589 | None:intergenic | 45.0% | |
| ! | CATTTAGCTCATACGTCGTG+TGG | + | chr5_3:29402570-29402589 | Msa0807610:CDS | 45.0% |
| CGTGTGGAATCACTCTGAAT+CGG | + | chr5_3:29402586-29402605 | Msa0807610:CDS | 45.0% | |
| ! | ACTCTGAATCGGTGCTCAAT+TGG | + | chr5_3:29402597-29402616 | Msa0807610:CDS | 45.0% |
| !! | GCTCAATTGGTGCTGAATCA+TGG | + | chr5_3:29402610-29402629 | Msa0807610:CDS | 45.0% |
| GCTCAACTCACTCACTCAAT+CGG | + | chr5_3:29402651-29402670 | Msa0807610:CDS | 45.0% | |
| ! | GTTAGTTCGGTTCCTTTTCC+AGG | + | chr5_3:29402722-29402741 | Msa0807610:intron | 45.0% |
| GGCATTCCTACCAAATAGTC+TGG | - | chr5_3:29403086-29403105 | None:intergenic | 45.0% | |
| CTACAACCTCTTACTCGACA+AGG | - | chr5_3:29403113-29403132 | None:intergenic | 45.0% | |
| GTATGTGTAACAGGAGCTTC+AGG | + | chr5_3:29403389-29403408 | Msa0807610:CDS | 45.0% | |
| ! | AACAGGAGCTTCAGGCTTTT+TGG | + | chr5_3:29403397-29403416 | Msa0807610:CDS | 45.0% |
| !!! | CTTCAGGCTTTTTGGCTTCT+TGG | + | chr5_3:29403405-29403424 | Msa0807610:CDS | 45.0% |
| ACTAACAGCTGAAGATGACG+CGG | - | chr5_3:29404005-29404024 | None:intergenic | 45.0% | |
| CTCCAAGATGACTCGTCTAT+TGG | - | chr5_3:29404055-29404074 | None:intergenic | 45.0% | |
| CTTTGAACAGGAAATGGCGG+CGG | + | chr5_3:29402299-29402318 | Msa0807610:exon | 50.0% | |
| TTTGAACAGGAAATGGCGGC+GGG | + | chr5_3:29402300-29402319 | Msa0807610:exon | 50.0% | |
| CGGGTCAATCTTGTGATACG+TGG | + | chr5_3:29402358-29402377 | Msa0807610:CDS | 50.0% | |
| TGATACGTGGAAGGAAGGGA+TGG | + | chr5_3:29402371-29402390 | Msa0807610:CDS | 50.0% | |
| CAAGGCGAGTATACAGGGTT+CGG | + | chr5_3:29402443-29402462 | Msa0807610:CDS | 50.0% | |
| CGGTGCTCAACTCACTCAAT+CGG | + | chr5_3:29402688-29402707 | Msa0807610:intron | 50.0% | |
| CCTCTTACTCGACAAGGGAT+CGG | - | chr5_3:29403107-29403126 | None:intergenic | 50.0% | |
| TGTTCGTTCCTGGGTTACGT+TGG | + | chr5_3:29403301-29403320 | Msa0807610:intron | 50.0% | |
| ! | CTTGCTATCCAACGTAACCC+AGG | - | chr5_3:29403312-29403331 | None:intergenic | 50.0% |
| CTGGGTTACGTTGGATAGCA+AGG | + | chr5_3:29403310-29403329 | Msa0807610:intron | 50.0% | |
| GGCAGAAATCTTGGAACCAG+CGG | + | chr5_3:29403913-29403932 | Msa0807610:intron | 50.0% | |
| GGCTAACACAACGCGAACAA+GGG | - | chr5_3:29403984-29404003 | None:intergenic | 50.0% | |
| CTTTGAACAGGAAATGGCGG+CGG | + | chr5_3:29402299-29402318 | Msa0807610:exon | 50.0% | |
| TTTGAACAGGAAATGGCGGC+GGG | + | chr5_3:29402300-29402319 | Msa0807610:exon | 50.0% | |
| CGGGTCAATCTTGTGATACG+TGG | + | chr5_3:29402358-29402377 | Msa0807610:CDS | 50.0% | |
| TGATACGTGGAAGGAAGGGA+TGG | + | chr5_3:29402371-29402390 | Msa0807610:CDS | 50.0% | |
| CAAGGCGAGTATACAGGGTT+CGG | + | chr5_3:29402443-29402462 | Msa0807610:CDS | 50.0% | |
| CGGTGCTCAACTCACTCAAT+CGG | + | chr5_3:29402688-29402707 | Msa0807610:intron | 50.0% | |
| CCTCTTACTCGACAAGGGAT+CGG | - | chr5_3:29403107-29403126 | None:intergenic | 50.0% | |
| TGTTCGTTCCTGGGTTACGT+TGG | + | chr5_3:29403301-29403320 | Msa0807610:intron | 50.0% | |
| ! | CTTGCTATCCAACGTAACCC+AGG | - | chr5_3:29403312-29403331 | None:intergenic | 50.0% |
| CTGGGTTACGTTGGATAGCA+AGG | + | chr5_3:29403310-29403329 | Msa0807610:intron | 50.0% | |
| GGCAGAAATCTTGGAACCAG+CGG | + | chr5_3:29403913-29403932 | Msa0807610:intron | 50.0% | |
| GGCTAACACAACGCGAACAA+GGG | - | chr5_3:29403984-29404003 | None:intergenic | 50.0% | |
| CCGATCCCTTGTCGAGTAAG+AGG | + | chr5_3:29403104-29403123 | Msa0807610:intron | 55.0% | |
| ATCTTGGAACCAGCGGTCCA+AGG | + | chr5_3:29403920-29403939 | Msa0807610:CDS | 55.0% | |
| TTTAGCGTACCTTGGACCGC+TGG | - | chr5_3:29403932-29403951 | None:intergenic | 55.0% | |
| AACACAACGCGAACAAGGGC+TGG | - | chr5_3:29403980-29403999 | None:intergenic | 55.0% | |
| CGGCTAACACAACGCGAACA+AGG | - | chr5_3:29403985-29404004 | None:intergenic | 55.0% | |
| CCGATCCCTTGTCGAGTAAG+AGG | + | chr5_3:29403104-29403123 | Msa0807610:intron | 55.0% | |
| ATCTTGGAACCAGCGGTCCA+AGG | + | chr5_3:29403920-29403939 | Msa0807610:CDS | 55.0% | |
| TTTAGCGTACCTTGGACCGC+TGG | - | chr5_3:29403932-29403951 | None:intergenic | 55.0% | |
| AACACAACGCGAACAAGGGC+TGG | - | chr5_3:29403980-29403999 | None:intergenic | 55.0% | |
| CGGCTAACACAACGCGAACA+AGG | - | chr5_3:29403985-29404004 | None:intergenic | 55.0% | |
| GGCGAGTATACAGGGTTCGG+AGG | + | chr5_3:29402446-29402465 | Msa0807610:CDS | 60.0% | |
| GGCGAGTATACAGGGTTCGG+AGG | + | chr5_3:29402446-29402465 | Msa0807610:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 29402269 | 29404078 | 29402269 | ID=Msa0807610;Name=Msa0807610 |
| chr5_3 | mRNA | 29402269 | 29404078 | 29402269 | ID=Msa0807610-mRNA-1;Parent=Msa0807610;Name=Msa0807610-mRNA-1;_AED=0.30;_eAED=0.30;_QI=43|0|0|0.6|0.5|0.2|5|0|265 |
| chr5_3 | exon | 29402269 | 29402416 | 29402269 | ID=Msa0807610-mRNA-1:exon:10202;Parent=Msa0807610-mRNA-1 |
| chr5_3 | exon | 29402432 | 29402672 | 29402432 | ID=Msa0807610-mRNA-1:exon:10203;Parent=Msa0807610-mRNA-1 |
| chr5_3 | exon | 29403375 | 29403485 | 29403375 | ID=Msa0807610-mRNA-1:exon:10204;Parent=Msa0807610-mRNA-1 |
| chr5_3 | exon | 29403578 | 29403750 | 29403578 | ID=Msa0807610-mRNA-1:exon:10205;Parent=Msa0807610-mRNA-1 |
| chr5_3 | exon | 29403914 | 29404078 | 29403914 | ID=Msa0807610-mRNA-1:exon:10206;Parent=Msa0807610-mRNA-1 |
| chr5_3 | five_prime_UTR | 29402269 | 29402311 | 29402269 | ID=Msa0807610-mRNA-1:five_prime_utr;Parent=Msa0807610-mRNA-1 |
| chr5_3 | CDS | 29402312 | 29402416 | 29402312 | ID=Msa0807610-mRNA-1:cds;Parent=Msa0807610-mRNA-1 |
| chr5_3 | CDS | 29402432 | 29402672 | 29402432 | ID=Msa0807610-mRNA-1:cds;Parent=Msa0807610-mRNA-1 |
| chr5_3 | CDS | 29403375 | 29403485 | 29403375 | ID=Msa0807610-mRNA-1:cds;Parent=Msa0807610-mRNA-1 |
| chr5_3 | CDS | 29403578 | 29403750 | 29403578 | ID=Msa0807610-mRNA-1:cds;Parent=Msa0807610-mRNA-1 |
| chr5_3 | CDS | 29403914 | 29404078 | 29403914 | ID=Msa0807610-mRNA-1:cds;Parent=Msa0807610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
