AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009750 MtrunA17_Chr7g0220541 96.160 625 23 1 1 625 1 624 0.0 1187
Msa1009750 MtrunA17_Chr3g0123611 50.356 562 225 9 7 523 17 569 1.35e-144 432
Msa1009750 MtrunA17_Chr6g0470981 38.801 567 301 11 9 544 15 566 7.12e-91 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009750 AT5G11390.1 38.311 663 351 12 10 616 37 697 6.48e-116 362
Msa1009750 AT1G68910.1 32.848 618 369 11 24 615 26 623 1.67e-79 264
Msa1009750 AT1G68910.2 34.574 564 326 10 24 564 26 569 2.52e-78 260
Msa1009750 AT1G68910.3 34.574 564 326 10 24 564 26 569 2.52e-78 260

Find 122 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCAATTGAAGAATGAAAT+TGG 0.147225 7_1:+11750885 None:intergenic
ACACTTCATGCTGAGATTTC+TGG 0.165736 7_1:-11749699 Msa1009750:CDS
ACCTAGTACAATATATTTCT+TGG 0.234945 7_1:+11744972 None:intergenic
GACTTTGTCTTCTTATAAAA+AGG 0.245052 7_1:-11749574 Msa1009750:CDS
GGTTCTGAGGTTAGAGATTT+GGG 0.265934 7_1:-11749735 Msa1009750:CDS
GGGTTCTGAGGTTAGAGATT+TGG 0.291296 7_1:-11749736 Msa1009750:CDS
AGGAAGAAGCAATCGAAGTT+TGG 0.300071 7_1:-11748738 Msa1009750:CDS
TGATTTGTTATGTGGGGTGC+TGG 0.301024 7_1:-11749757 Msa1009750:CDS
AACTTCAACTATTGTTGTTC+CGG 0.307411 7_1:+11750026 None:intergenic
ATGACAACTGCAAAGAATAT+TGG 0.308994 7_1:-11747923 Msa1009750:CDS
ACAGCTGAAGCAGTTAATTT+AGG 0.314252 7_1:-11748520 Msa1009750:CDS
TGATGAAGAAAACATCGATA+TGG 0.316839 7_1:-11749805 Msa1009750:CDS
GCTGCAGCTCTGGAGGATCT+TGG 0.318277 7_1:-11744811 Msa1009750:three_prime_UTR
TATGATGAATTTGGAAACTT+TGG 0.334665 7_1:-11749853 Msa1009750:CDS
CTTTCTCAGTTCAATTTGAT+TGG 0.338086 7_1:-11748640 Msa1009750:CDS
GAGGATGCTTGAGAAATCTT+TGG 0.339008 7_1:-11748863 Msa1009750:CDS
GTTGGAGGTGTTTCAGATAA+TGG 0.340110 7_1:-11749945 Msa1009750:CDS
TGAATCTTACAATTGAAGTA+TGG 0.346030 7_1:-11744835 Msa1009750:three_prime_UTR
CTTCATTTGAAATTCCCTTC+AGG 0.351204 7_1:+11748680 None:intergenic
CAGCAGGCAGTAGCGTCTGC+TGG 0.352082 7_1:-11748175 Msa1009750:CDS
ACCCAATTTCATTCTTCAAT+TGG 0.353122 7_1:-11750887 Msa1009750:intron
TTTGAGTTTGATTTGTTATG+TGG 0.355398 7_1:-11749765 Msa1009750:CDS
CTGCAGCTCTGGAGGATCTT+GGG 0.358007 7_1:-11744810 Msa1009750:three_prime_UTR
TTTGCTGACACAGTTGGCTT+TGG 0.366680 7_1:-11747876 Msa1009750:CDS
AACTTTGGAAGGTGAATTAG+AGG 0.372115 7_1:-11749838 Msa1009750:CDS
AGCAAGCGAGAACAAACTTT+TGG 0.375212 7_1:-11746856 Msa1009750:CDS
TGTGACCTTTCTGTATTTCA+AGG 0.376220 7_1:-11745194 Msa1009750:CDS
GTGTTACACAATTGAAGATA+TGG 0.376803 7_1:-11748125 Msa1009750:CDS
TTGAGTTTGATTTGTTATGT+GGG 0.386095 7_1:-11749764 Msa1009750:CDS
AAGTTTCTTGAGGAGTAGAT+TGG 0.388441 7_1:-11747987 Msa1009750:CDS
TAAGCTGGGACTTGCGGATT+GGG 0.399216 7_1:-11745093 Msa1009750:three_prime_UTR
TTTCTTTCAATTCTACGATA+AGG 0.399271 7_1:+11748368 None:intergenic
GAGATTCTTCTTTGAACGAT+TGG 0.400387 7_1:-11749665 Msa1009750:CDS
GGAAGAAGCAATCGAAGTTT+GGG 0.409580 7_1:-11748737 Msa1009750:CDS
AGATATGGAACATGTGATAA+AGG 0.420057 7_1:-11748110 Msa1009750:CDS
GAAGTATGGTGCTGCAGCTC+TGG 0.421772 7_1:-11744821 Msa1009750:three_prime_UTR
ACCAATTGAAGAATGAAATT+GGG 0.423735 7_1:+11750886 None:intergenic
TCGAAGTTTGATCATCCTCT+TGG 0.428130 7_1:+11748938 None:intergenic
CTCCTCACAGTCCCAACATC+TGG 0.434733 7_1:+11745283 None:intergenic
GAGAAAGGTCGATCTCTTCA+TGG 0.436528 7_1:+11745151 None:intergenic
TACTTCAATTGTAAGATTCA+AGG 0.455305 7_1:+11744838 None:intergenic
GGGAATTTCAAATGAAGTGT+TGG 0.466188 7_1:-11748674 Msa1009750:CDS
TTCCAGCTTATCTCTAAGCT+CGG 0.467512 7_1:+11748600 None:intergenic
TCTTGGGTTCAAAAGATAGA+TGG 0.471453 7_1:-11744794 Msa1009750:three_prime_UTR
AGACTTTCACATTCACCAAC+TGG 0.472930 7_1:+11748452 None:intergenic
TACAATATATTTCTTGGACC+TGG 0.473885 7_1:+11744978 None:intergenic
ACTACTGTTGGGATCTAAGC+TGG 0.474414 7_1:-11745108 Msa1009750:three_prime_UTR
CTAAGCTGGGACTTGCGGAT+TGG 0.475146 7_1:-11745094 Msa1009750:three_prime_UTR
ACTGAAGCAAACATATAAGA+AGG 0.478500 7_1:-11746826 Msa1009750:CDS
ATCACCATACTGCACTTGTA+AGG 0.488815 7_1:+11745017 None:intergenic
GACTTTGTCTTCTGAGTATG+AGG 0.489364 7_1:-11746781 Msa1009750:intron
GAATCCTTACAAGTGCAGTA+TGG 0.489890 7_1:-11745021 Msa1009750:three_prime_UTR
ATCCGAGCTTAGAGATAAGC+TGG 0.490624 7_1:-11748602 Msa1009750:CDS
TACAAGGACAATGACATTGT+AGG 0.493849 7_1:-11744763 Msa1009750:three_prime_UTR
TTAACTCGTCTTCTAAAGAA+AGG 0.496891 7_1:+11748770 None:intergenic
GATTTGTTATGTGGGGTGCT+GGG 0.499035 7_1:-11749756 Msa1009750:CDS
CAGATTCAATACCAGATGTT+GGG 0.500850 7_1:-11745294 Msa1009750:CDS
GACTGATTTACAGCTGCAGC+AGG 0.504375 7_1:-11748191 Msa1009750:CDS
ACAATATATTTCTTGGACCT+GGG 0.507168 7_1:+11744979 None:intergenic
ATGTGGGGTGCTGGGTTCTG+AGG 0.507959 7_1:-11749748 Msa1009750:CDS
GAACGATTGGCAAGAGAGGT+TGG 0.512420 7_1:-11749652 Msa1009750:CDS
GTTACTTGAAAGGCAGCTAA+AGG 0.514392 7_1:-11748215 Msa1009750:CDS
GAGAGAGCGTCTTAATAAGA+AGG 0.518789 7_1:-11747852 Msa1009750:intron
GAGTAGATTGGAATGCTTGG+AGG 0.519165 7_1:-11747975 Msa1009750:CDS
TCAGATTCAATACCAGATGT+TGG 0.521726 7_1:-11745295 Msa1009750:CDS
AAGTTTGTTCTCGCTTGCTA+AGG 0.523128 7_1:+11746860 None:intergenic
GGGATCTAAGCTGGGACTTG+CGG 0.524792 7_1:-11745099 Msa1009750:three_prime_UTR
TTTGTTCTCGCTTGCTAAGG+AGG 0.527329 7_1:+11746863 None:intergenic
GATAAAGGATCTTAAGTCAA+AGG 0.527438 7_1:-11748095 Msa1009750:CDS
TAAAAGTTTGCTGACACAGT+TGG 0.530211 7_1:-11747882 Msa1009750:CDS
GAAAGGCAAGAGACTACTGT+TGG 0.530914 7_1:-11745120 Msa1009750:three_prime_UTR
CTTTGAACGATTGGCAAGAG+AGG 0.530964 7_1:-11749656 Msa1009750:CDS
CAAAGTGTTGAAGATAATAC+CGG 0.537217 7_1:-11749978 Msa1009750:CDS
GAGGAGTAGATTGGAATGCT+TGG 0.538497 7_1:-11747978 Msa1009750:CDS
AGATAATGGAGAAGTTATTG+TGG 0.538820 7_1:-11749931 Msa1009750:CDS
ATGCAGCTGTAGAGGATCCC+AGG 0.544833 7_1:-11744996 Msa1009750:three_prime_UTR
TCCAAGAAATATATTGTACT+AGG 0.549748 7_1:-11744973 Msa1009750:three_prime_UTR
ACGAGGAAGTAAGTTTCTTG+AGG 0.550455 7_1:-11747997 Msa1009750:CDS
CAAGTCCTTGAAATACAGAA+AGG 0.560321 7_1:+11745189 None:intergenic
AGTTTGGGAAAGATTGTTTG+AGG 0.560777 7_1:-11748722 Msa1009750:CDS
ATGAATTTGGAAACTTTGGA+AGG 0.568364 7_1:-11749849 Msa1009750:CDS
ATACTGTTGCTGATATTCAT+CGG 0.568555 7_1:+11748426 None:intergenic
TGAGTTTGATTTGTTATGTG+GGG 0.573199 7_1:-11749763 Msa1009750:CDS
GTATGGTGCTGCAGCTCTGG+AGG 0.578266 7_1:-11744818 Msa1009750:three_prime_UTR
CTACTGTTGGGATCTAAGCT+GGG 0.580716 7_1:-11745107 Msa1009750:three_prime_UTR
ACCTCCAACATCAACATCAC+CGG 0.581822 7_1:+11749959 None:intergenic
ACCGGTGATGTTGATGTTGG+AGG 0.584105 7_1:-11749960 Msa1009750:CDS
AGTAGATTGGAATGCTTGGA+GGG 0.587529 7_1:-11747974 Msa1009750:CDS
TTCAAAAGATAGATGGTACT+AGG 0.589285 7_1:-11744787 Msa1009750:three_prime_UTR
TGCACTGTCAGCTAGACTCT+CGG 0.590430 7_1:+11748063 None:intergenic
ATATATTGTACTAGGTTACA+AGG 0.596837 7_1:-11744965 Msa1009750:three_prime_UTR
AATACCGGTGATGTTGATGT+TGG 0.597119 7_1:-11749963 Msa1009750:CDS
AGAGAGGTTGGTTGAATCCG+AGG 0.600549 7_1:-11749640 Msa1009750:CDS
TTGTAAGATTCAAGGAATCG+TGG 0.601393 7_1:+11744846 None:intergenic
ACAGAAAGGTCACAGCTGAA+AGG 0.601509 7_1:+11745203 None:intergenic
AAAGGCAAGAGACTACTGTT+GGG 0.602120 7_1:-11745119 Msa1009750:three_prime_UTR
ATAGATGGTACTAGGTTACA+AGG 0.604980 7_1:-11744779 Msa1009750:three_prime_UTR
GGAGGGATCACTGCAGAAAG+CGG 0.612584 7_1:-11747957 Msa1009750:CDS
AGAGTGTAGAGTTACTTGAA+AGG 0.618606 7_1:-11748225 Msa1009750:CDS
CTGAAGCAAACATATAAGAA+GGG 0.621626 7_1:-11746825 Msa1009750:CDS
GTGTTCTCAAGTTAGAGACA+TGG 0.624574 7_1:-11748395 Msa1009750:CDS
GAGTCTAGCTGACAGTGCAG+AGG 0.624641 7_1:-11748059 Msa1009750:CDS
AATCTCGTAAAACTGCTCCT+CGG 0.624682 7_1:+11749623 None:intergenic
GGGAAATGACATCATACGAA+AGG 0.624990 7_1:-11745073 Msa1009750:three_prime_UTR
TTGAAGAAAAGCTAAATCTG+AGG 0.628560 7_1:-11748795 Msa1009750:CDS
TACCAGATGTTGGGACTGTG+AGG 0.630861 7_1:-11745285 Msa1009750:CDS
AGACGAGTTAATTCAAACAG+AGG 0.633790 7_1:-11748758 Msa1009750:CDS
GTATGGTGATGCAGCTGTAG+AGG 0.637203 7_1:-11745004 Msa1009750:three_prime_UTR
ACAAGAAACTGAATGCCAGT+TGG 0.639494 7_1:-11748467 Msa1009750:CDS
GTGATGAATATTTCAGACAA+CGG 0.643744 7_1:+11750929 None:intergenic
ACTTTGGAAGGTGAATTAGA+GGG 0.646483 7_1:-11749837 Msa1009750:CDS
ACTGTGAGGAGAATTGATGC+AGG 0.649793 7_1:-11745271 Msa1009750:CDS
CAATGCGCGTGAGATCCTGA+AGG 0.651405 7_1:-11748695 Msa1009750:CDS
AACTAATGAAGAACTCAACA+AGG 0.662178 7_1:-11748284 Msa1009750:CDS
GGGATCACTGCAGAAAGCGG+AGG 0.666512 7_1:-11747954 Msa1009750:CDS
ACAACAGGGAATGTTGAAGA+CGG 0.671738 7_1:-11748970 Msa1009750:intron
AATGCGCGTGAGATCCTGAA+GGG 0.678003 7_1:-11748694 Msa1009750:CDS
TGTACTAGGTTACAAGGACA+CGG 0.689484 7_1:-11744959 Msa1009750:three_prime_UTR
ATCTAATGCTGATTTAAACG+AGG 0.690867 7_1:-11748014 Msa1009750:CDS
ACAGGGAATGTTGAAGACGG+TGG 0.694865 7_1:-11748967 Msa1009750:intron
AGACGGTGGAAATGTCCAAG+AGG 0.721239 7_1:-11748953 Msa1009750:CDS
AGAAAATCGAGCTAATGCTG+CGG 0.733775 7_1:-11748332 Msa1009750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTAAAGTTTTTAC+CGG - chr7_1:11745027-11745046 Msa1009750:three_prime_UTR 10.0%
!!! TTGTTTTAAAAAATAAGATA+AGG - chr7_1:11746316-11746335 Msa1009750:intron 10.0%
!! TTATTAGAAATGAAAATTTA+GGG + chr7_1:11746601-11746620 None:intergenic 10.0%
!! TTTATTAGAAATGAAAATTT+AGG + chr7_1:11746602-11746621 None:intergenic 10.0%
!! TTTACCATTATTATTATATA+AGG - chr7_1:11748116-11748135 Msa1009750:CDS 10.0%
!! AAAACCTTATATAATAATAA+TGG + chr7_1:11748123-11748142 None:intergenic 10.0%
!!! GTTAAATATTTTTCTTTTTA+TGG - chr7_1:11749349-11749368 Msa1009750:intron 10.0%
!!! TATTTTTTAAAGTTTTTACC+GGG - chr7_1:11745028-11745047 Msa1009750:three_prime_UTR 15.0%
!! ATTCAAATACTGAAATATAT+AGG + chr7_1:11748441-11748460 None:intergenic 15.0%
!!! CATAAATGTTTAAAACAAAT+GGG + chr7_1:11748665-11748684 None:intergenic 15.0%
!!! ACATAAATGTTTAAAACAAA+TGG + chr7_1:11748666-11748685 None:intergenic 15.0%
!!! ATATTTTGAAACAATTGTTA+AGG + chr7_1:11749239-11749258 None:intergenic 15.0%
!!! TACTATTTCTATTAAATTGT+TGG - chr7_1:11749576-11749595 Msa1009750:CDS 15.0%
!! AATAAATAAAGAACAATATC+AGG + chr7_1:11750122-11750141 None:intergenic 15.0%
!! ATTGTATTGTATTCACTTTA+TGG - chr7_1:11744873-11744892 Msa1009750:three_prime_UTR 20.0%
!!! GAGTATTTTTATGATGAATT+TGG - chr7_1:11745767-11745786 Msa1009750:intron 20.0%
!!! AACAATCTTTTAGTTTTGAA+AGG - chr7_1:11746033-11746052 Msa1009750:intron 20.0%
!! ATATCACATGAAAATTAATG+TGG + chr7_1:11746229-11746248 None:intergenic 20.0%
!! ATAAAAATATTCTCATTGGT+CGG + chr7_1:11746378-11746397 None:intergenic 20.0%
!! TCAGATAAAAATATTCTCAT+TGG + chr7_1:11746382-11746401 None:intergenic 20.0%
!! TAATTCATATACACAATCAA+TGG + chr7_1:11746576-11746595 None:intergenic 20.0%
!! ATTAATCAACATAAATAACC+AGG - chr7_1:11747910-11747929 Msa1009750:CDS 20.0%
!! TTAATCAACATAAATAACCA+GGG - chr7_1:11747911-11747930 Msa1009750:CDS 20.0%
!!! GTATGTTTAAGTTACATAAA+AGG + chr7_1:11748176-11748195 None:intergenic 20.0%
!!! TGTTTGATCTATAGTTTTTT+TGG - chr7_1:11749175-11749194 Msa1009750:intron 20.0%
!! GAAAAATATTTAACTAAGCT+AGG + chr7_1:11749343-11749362 None:intergenic 20.0%
!! AATAAATGTAAAACAGTACT+TGG - chr7_1:11749485-11749504 Msa1009750:intron 20.0%
!! AATAGCATTAAATACAATGA+AGG + chr7_1:11749760-11749779 None:intergenic 20.0%
!!! GTAATCAAATTTTGTTTCAA+TGG - chr7_1:11750725-11750744 Msa1009750:intron 20.0%
!!! AAATTGGGTTGATTTTAGAT+CGG + chr7_1:11744731-11744750 None:intergenic 25.0%
! ACCAATTGAAGAATGAAATT+GGG + chr7_1:11744746-11744765 None:intergenic 25.0%
! TACCAATTGAAGAATGAAAT+TGG + chr7_1:11744747-11744766 None:intergenic 25.0%
! AATTGAAATACGCAATTGAA+GGG + chr7_1:11744780-11744799 None:intergenic 25.0%
! GTGAATACAATACAATATAC+TGG + chr7_1:11744869-11744888 None:intergenic 25.0%
!! TAGATTGTTACTTAACTTCA+TGG - chr7_1:11745175-11745194 Msa1009750:CDS 25.0%
!!! TAGATTGTTATTTCAATTCG+CGG - chr7_1:11745391-11745410 Msa1009750:intron 25.0%
!! ATTTTTACACTTGATTAACC+AGG - chr7_1:11745507-11745526 Msa1009750:intron 25.0%
!!! AATTTTTTGAGTTTTCTTCC+AGG - chr7_1:11745578-11745597 Msa1009750:intron 25.0%
!!! GTTTTTTACGATTAGAACAA+TGG - chr7_1:11745623-11745642 Msa1009750:intron 25.0%
! TATGATGAATTTGGAAACTT+TGG - chr7_1:11745776-11745795 Msa1009750:intron 25.0%
!!! GATATGGATTGTGTTTTAAA+GGG - chr7_1:11745840-11745859 Msa1009750:intron 25.0%
!!! TTTGAGTTTGATTTGTTATG+TGG - chr7_1:11745864-11745883 Msa1009750:intron 25.0%
!!! TTGAGTTTGATTTGTTATGT+GGG - chr7_1:11745865-11745884 Msa1009750:intron 25.0%
! GACTTTGTCTTCTTATAAAA+AGG - chr7_1:11746055-11746074 Msa1009750:intron 25.0%
! TCTTATAAAAAGGAAGAGAA+TGG - chr7_1:11746065-11746084 Msa1009750:intron 25.0%
! TTTCATTTAGTTGTTGGAAA+AGG - chr7_1:11746187-11746206 Msa1009750:intron 25.0%
! TTCATTTAGTTGTTGGAAAA+GGG - chr7_1:11746188-11746207 Msa1009750:intron 25.0%
! GAAAATCCAACACATAAAAA+AGG + chr7_1:11746635-11746654 None:intergenic 25.0%
! GAAAAATAGAGACGTTAATT+TGG - chr7_1:11747069-11747088 Msa1009750:intron 25.0%
! TTTCTTTCAATTCTACGATA+AGG + chr7_1:11747264-11747283 None:intergenic 25.0%
! AGTTCAGTGTAAAAAATTGA+CGG - chr7_1:11747321-11747340 Msa1009750:intron 25.0%
!!! CAGCAAACTTTTAAAAACTT+TGG + chr7_1:11747740-11747759 None:intergenic 25.0%
! TATTCAAGAGAGATATTATC+AGG + chr7_1:11747860-11747879 None:intergenic 25.0%
!! AGAAAATAAAAAGCATAGTC+TGG + chr7_1:11748032-11748051 None:intergenic 25.0%
!! GTTTAAGTTACATAAAAGGT+TGG + chr7_1:11748172-11748191 None:intergenic 25.0%
! AATACTGAAATATATAGGTG+AGG + chr7_1:11748436-11748455 None:intergenic 25.0%
! AAATCAAAGAGGAGAAAAAA+AGG + chr7_1:11748483-11748502 None:intergenic 25.0%
! TTAACAACTGTAGTTATGTA+TGG - chr7_1:11748523-11748542 Msa1009750:CDS 25.0%
!!! CTTCAATCAAGTTGATTTAT+AGG + chr7_1:11748581-11748600 None:intergenic 25.0%
! GTAAAACATTGTCTTGTATT+AGG - chr7_1:11749115-11749134 Msa1009750:intron 25.0%
!!! TTTTGAAACAATTGTTAAGG+AGG + chr7_1:11749236-11749255 None:intergenic 25.0%
! TTTCAATGTACTAACATTCA+TGG - chr7_1:11749303-11749322 Msa1009750:intron 25.0%
!!! AAAAGTTGATACGACATATA+AGG + chr7_1:11749424-11749443 None:intergenic 25.0%
!!! CATGAAACATTCATGTTTTT+TGG - chr7_1:11749708-11749727 Msa1009750:CDS 25.0%
! ATTATGGTATTATCTTCTGT+TGG - chr7_1:11749982-11750001 Msa1009750:CDS 25.0%
! AAAAAAAAGGACAATTTGGA+AGG + chr7_1:11750093-11750112 None:intergenic 25.0%
! AGGAAAAAAAAAGGACAATT+TGG + chr7_1:11750097-11750116 None:intergenic 25.0%
! TATCAGGAAAGGAAAAAAAA+AGG + chr7_1:11750106-11750125 None:intergenic 25.0%
! ATAAAGAACAATATCAGGAA+AGG + chr7_1:11750117-11750136 None:intergenic 25.0%
! TCCAAGAAATATATTGTACT+AGG - chr7_1:11750656-11750675 Msa1009750:intron 25.0%
! ACCTAGTACAATATATTTCT+TGG + chr7_1:11750660-11750679 None:intergenic 25.0%
! ATATATTGTACTAGGTTACA+AGG - chr7_1:11750664-11750683 Msa1009750:intron 25.0%
! TACTTCAATTGTAAGATTCA+AGG + chr7_1:11750794-11750813 None:intergenic 25.0%
! TGAATCTTACAATTGAAGTA+TGG - chr7_1:11750794-11750813 Msa1009750:intron 25.0%
ACCCAATTTCATTCTTCAAT+TGG - chr7_1:11744742-11744761 Msa1009750:three_prime_UTR 30.0%
GAATTGAAATACGCAATTGA+AGG + chr7_1:11744781-11744800 None:intergenic 30.0%
!! TTTAAAGTTTTTACCGGGAT+CGG - chr7_1:11745033-11745052 Msa1009750:three_prime_UTR 30.0%
GTTGATCACGTTAAAAAGTA+TGG - chr7_1:11745138-11745157 Msa1009750:three_prime_UTR 30.0%
!!! TTTTTTTAGCACTGTAGCAT+TGG - chr7_1:11745246-11745265 Msa1009750:CDS 30.0%
! AACTTCAACTATTGTTGTTC+CGG + chr7_1:11745606-11745625 None:intergenic 30.0%
!! CAAAGTGTTGAAGATAATAC+CGG - chr7_1:11745651-11745670 Msa1009750:intron 30.0%
!! AGATAATGGAGAAGTTATTG+TGG - chr7_1:11745698-11745717 Msa1009750:intron 30.0%
ATGAATTTGGAAACTTTGGA+AGG - chr7_1:11745780-11745799 Msa1009750:intron 30.0%
TGATGAAGAAAACATCGATA+TGG - chr7_1:11745824-11745843 Msa1009750:intron 30.0%
!! CGATATGGATTGTGTTTTAA+AGG - chr7_1:11745839-11745858 Msa1009750:intron 30.0%
!! TGAGTTTGATTTGTTATGTG+GGG - chr7_1:11745866-11745885 Msa1009750:intron 30.0%
!! TAGAGATTTGGGTTTGTTTT+TGG - chr7_1:11745905-11745924 Msa1009750:intron 30.0%
CAACAACTAAATGAAAAGAC+AGG + chr7_1:11746183-11746202 None:intergenic 30.0%
! CTGTCTTTTCATTTAGTTGT+TGG - chr7_1:11746181-11746200 Msa1009750:intron 30.0%
! AAACGCCTATTTTGCATTAA+TGG - chr7_1:11746281-11746300 Msa1009750:intron 30.0%
GAGTTCCATTAATGCAAAAT+AGG + chr7_1:11746289-11746308 None:intergenic 30.0%
TATGAAGTCACACATATGAT+TGG + chr7_1:11746472-11746491 None:intergenic 30.0%
AGTTAGAACATTAACATTGC+TGG + chr7_1:11746521-11746540 None:intergenic 30.0%
! TTGGATTTTCAATGACAACA+GGG - chr7_1:11746645-11746664 Msa1009750:intron 30.0%
! AGCAACATAGAAACATTTTG+AGG - chr7_1:11746747-11746766 Msa1009750:intron 30.0%
TTGAAGAAAAGCTAAATCTG+AGG - chr7_1:11746834-11746853 Msa1009750:CDS 30.0%
! TTAACTCGTCTTCTAAAGAA+AGG + chr7_1:11746862-11746881 None:intergenic 30.0%
CTTTCTCAGTTCAATTTGAT+TGG - chr7_1:11746989-11747008 Msa1009750:intron 30.0%
ATACTGTTGCTGATATTCAT+CGG + chr7_1:11747206-11747225 None:intergenic 30.0%
AACTAATGAAGAACTCAACA+AGG - chr7_1:11747345-11747364 Msa1009750:intron 30.0%
GTGTTACACAATTGAAGATA+TGG - chr7_1:11747504-11747523 Msa1009750:intron 30.0%
AGATATGGAACATGTGATAA+AGG - chr7_1:11747519-11747538 Msa1009750:intron 30.0%
GATAAAGGATCTTAAGTCAA+AGG - chr7_1:11747534-11747553 Msa1009750:intron 30.0%
!! ATCTAATGCTGATTTAAACG+AGG - chr7_1:11747615-11747634 Msa1009750:intron 30.0%
ATGACAACTGCAAAGAATAT+TGG - chr7_1:11747706-11747725 Msa1009750:intron 30.0%
GAAACAAGATTTCAAAAGCT+TGG + chr7_1:11747809-11747828 None:intergenic 30.0%
! TGATAATTTGTGTCAACAAG+AGG - chr7_1:11747955-11747974 Msa1009750:CDS 30.0%
! GATAATTTGTGTCAACAAGA+GGG - chr7_1:11747956-11747975 Msa1009750:CDS 30.0%
! ATAATTTGTGTCAACAAGAG+GGG - chr7_1:11747957-11747976 Msa1009750:CDS 30.0%
! AGTTGATTCTAAAAAAGTGC+TGG + chr7_1:11748075-11748094 None:intergenic 30.0%
AAAAAGACTAACAAGCTCAT+AGG + chr7_1:11748213-11748232 None:intergenic 30.0%
TAAACAACTTTCAAAATGCC+AGG - chr7_1:11748299-11748318 Msa1009750:CDS 30.0%
!! CTGTTATAGGTCCATTTTTA+AGG + chr7_1:11748329-11748348 None:intergenic 30.0%
CTTAAAAATGGACCTATAAC+AGG - chr7_1:11748327-11748346 Msa1009750:CDS 30.0%
TGAAAGTGGAAAAATCAAAG+AGG + chr7_1:11748494-11748513 None:intergenic 30.0%
AACTACAGTTGTTAAACTCA+AGG + chr7_1:11748518-11748537 None:intergenic 30.0%
CAACTTGATTGAAGATTCAT+TGG - chr7_1:11748587-11748606 Msa1009750:CDS 30.0%
TTTATATACCTGTTCATCCT+TGG - chr7_1:11748713-11748732 Msa1009750:CDS 30.0%
AAGGACAAAAATTTCAACCA+AGG + chr7_1:11748733-11748752 None:intergenic 30.0%
ACTGAAGCAAACATATAAGA+AGG - chr7_1:11748803-11748822 Msa1009750:CDS 30.0%
CTGAAGCAAACATATAAGAA+GGG - chr7_1:11748804-11748823 Msa1009750:CDS 30.0%
ATGAACTAGTGGGAAAAAAA+AGG + chr7_1:11749081-11749100 None:intergenic 30.0%
!!! TTTTTTTTCCCACTAGTTCA+TGG - chr7_1:11749080-11749099 Msa1009750:intron 30.0%
!!! TTTTGGTTCTCTCTAACTAT+TGG - chr7_1:11749192-11749211 Msa1009750:intron 30.0%
AACAGAAATATACTGCCAAT+AGG + chr7_1:11749285-11749304 None:intergenic 30.0%
!! CTGGTAAAGTGTTATTTGTT+AGG - chr7_1:11749450-11749469 Msa1009750:intron 30.0%
!! TGCACATATTATTTCTAACC+AGG + chr7_1:11749528-11749547 None:intergenic 30.0%
GTAATTATGCAGTCCAAAAT+CGG + chr7_1:11749604-11749623 None:intergenic 30.0%
! GGACTGCATAATTACTATTT+TGG - chr7_1:11749609-11749628 Msa1009750:CDS 30.0%
ATAATACACTTCAATGATGC+TGG - chr7_1:11749786-11749805 Msa1009750:CDS 30.0%
ACAATTAAAACGAGAAGAGT+CGG - chr7_1:11749812-11749831 Msa1009750:CDS 30.0%
TCGGCAATAAATCTCATAAA+AGG - chr7_1:11749831-11749850 Msa1009750:CDS 30.0%
CGGCAATAAATCTCATAAAA+GGG - chr7_1:11749832-11749851 Msa1009750:CDS 30.0%
GTAATAACAGCAGAGAAATA+TGG - chr7_1:11750222-11750241 Msa1009750:intron 30.0%
!!! ACCTTTCTCTATTTTTGGAA+AGG - chr7_1:11750492-11750511 Msa1009750:intron 30.0%
ACAATATATTTCTTGGACCT+GGG + chr7_1:11750653-11750672 None:intergenic 30.0%
TACAATATATTTCTTGGACC+TGG + chr7_1:11750654-11750673 None:intergenic 30.0%
TTCAAAAGATAGATGGTACT+AGG - chr7_1:11750842-11750861 Msa1009750:intron 30.0%
AAATACGCAATTGAAGGGAA+TGG + chr7_1:11744775-11744794 None:intergenic 35.0%
AACACATCTTTGATCAGAAG+TGG + chr7_1:11744969-11744988 None:intergenic 35.0%
CTTCTGATCAAAGATGTGTT+TGG - chr7_1:11744969-11744988 Msa1009750:three_prime_UTR 35.0%
! ACTTTTGAACGTGATTAACC+AGG + chr7_1:11745353-11745372 None:intergenic 35.0%
GTTAATCACGTTCAAAAGTG+TGG - chr7_1:11745354-11745373 Msa1009750:intron 35.0%
GATCGTGAAACAAAAAGTCA+TGG + chr7_1:11745451-11745470 None:intergenic 35.0%
ATCACAGGTGTATGAAAAAC+TGG - chr7_1:11745531-11745550 Msa1009750:intron 35.0%
GTGTATGAAAAACTGGTTGT+TGG - chr7_1:11745538-11745557 Msa1009750:intron 35.0%
!!! TGTGGATTTTGAAATGAGTG+TGG - chr7_1:11745716-11745735 Msa1009750:intron 35.0%
! AACTTTGGAAGGTGAATTAG+AGG - chr7_1:11745791-11745810 Msa1009750:intron 35.0%
! ACTTTGGAAGGTGAATTAGA+GGG - chr7_1:11745792-11745811 Msa1009750:intron 35.0%
GAGATTCTTCTTTGAACGAT+TGG - chr7_1:11745964-11745983 Msa1009750:intron 35.0%
CATATGTGTGACTTCATAAG+TGG - chr7_1:11746474-11746493 Msa1009750:intron 35.0%
!!! TGCTGTCCTTTTTTATGTGT+TGG - chr7_1:11746626-11746645 Msa1009750:intron 35.0%
! GTTGGATTTTCAATGACAAC+AGG - chr7_1:11746644-11746663 Msa1009750:intron 35.0%
AGACGAGTTAATTCAAACAG+AGG - chr7_1:11746871-11746890 Msa1009750:intron 35.0%
AGTTTGGGAAAGATTGTTTG+AGG - chr7_1:11746907-11746926 Msa1009750:intron 35.0%
! CTTCATTTGAAATTCCCTTC+AGG + chr7_1:11746952-11746971 None:intergenic 35.0%
GGGAATTTCAAATGAAGTGT+TGG - chr7_1:11746955-11746974 Msa1009750:intron 35.0%
ACAGCTGAAGCAGTTAATTT+AGG - chr7_1:11747109-11747128 Msa1009750:intron 35.0%
!! CTGACTCTTTTAAAAGACTG+TGG - chr7_1:11747370-11747389 Msa1009750:intron 35.0%
AGAGTGTAGAGTTACTTGAA+AGG - chr7_1:11747404-11747423 Msa1009750:intron 35.0%
AAGTTTCTTGAGGAGTAGAT+TGG - chr7_1:11747642-11747661 Msa1009750:intron 35.0%
!! TAAAAGTTTGCTGACACAGT+TGG - chr7_1:11747747-11747766 Msa1009750:intron 35.0%
TCTATGGCAGTATAATGTAG+TGG + chr7_1:11747835-11747854 None:intergenic 35.0%
GAGATATTATCAGGTCTCTA+TGG + chr7_1:11747851-11747870 None:intergenic 35.0%
! TAAAAAGCATAGTCTGGCTT+GGG + chr7_1:11748026-11748045 None:intergenic 35.0%
! ATAAAAAGCATAGTCTGGCT+TGG + chr7_1:11748027-11748046 None:intergenic 35.0%
ATGGACCTATAACAGGTAAT+AGG - chr7_1:11748334-11748353 Msa1009750:CDS 35.0%
CTGAAATATATAGGTGAGGT+GGG + chr7_1:11748432-11748451 None:intergenic 35.0%
ACTGAAATATATAGGTGAGG+TGG + chr7_1:11748433-11748452 None:intergenic 35.0%
ATTGGATGAACATTTAGCAG+TGG - chr7_1:11748605-11748624 Msa1009750:CDS 35.0%
AATTTCAACCAAGGATGAAC+AGG + chr7_1:11748724-11748743 None:intergenic 35.0%
CTGATACACAAGAATCTCTT+TGG - chr7_1:11748916-11748935 Msa1009750:CDS 35.0%
!! CTATTGTATGGCTTTGGATA+TGG - chr7_1:11748997-11749016 Msa1009750:intron 35.0%
AAACAATTTGAACACGCTAG+TGG + chr7_1:11749160-11749179 None:intergenic 35.0%
GTTAAGGAGGATTGATAAGA+AGG + chr7_1:11749223-11749242 None:intergenic 35.0%
TATACTGCCAATAGGATGTT+TGG + chr7_1:11749277-11749296 None:intergenic 35.0%
!!! TAAATTGTTGGCTCCGATTT+TGG - chr7_1:11749588-11749607 Msa1009750:CDS 35.0%
GTAAACACAATTACTTCCTC+CGG - chr7_1:11749665-11749684 Msa1009750:CDS 35.0%
! TTTTTGCTTACAATCGAGAC+CGG + chr7_1:11749687-11749706 None:intergenic 35.0%
ACCATAATACTTACTCCCTT+CGG + chr7_1:11749970-11749989 None:intergenic 35.0%
!! TGCTCCTATTTTTCTTTTCC+AGG - chr7_1:11750264-11750283 Msa1009750:intron 35.0%
!! GCTCCTATTTTTCTTTTCCA+GGG - chr7_1:11750265-11750284 Msa1009750:intron 35.0%
!! CTCCTATTTTTCTTTTCCAG+GGG - chr7_1:11750266-11750285 Msa1009750:intron 35.0%
TTCCCCTGGAAAAGAAAAAT+AGG + chr7_1:11750271-11750290 None:intergenic 35.0%
TCAGATTCAATACCAGATGT+TGG - chr7_1:11750334-11750353 Msa1009750:intron 35.0%
CAGATTCAATACCAGATGTT+GGG - chr7_1:11750335-11750354 Msa1009750:intron 35.0%
TGTGACCTTTCTGTATTTCA+AGG - chr7_1:11750435-11750454 Msa1009750:intron 35.0%
CAAGTCCTTGAAATACAGAA+AGG + chr7_1:11750443-11750462 None:intergenic 35.0%
! GATCGACCTTTCTCTATTTT+TGG - chr7_1:11750487-11750506 Msa1009750:intron 35.0%
GCCTTTCCAAAAATAGAGAA+AGG + chr7_1:11750496-11750515 None:intergenic 35.0%
!!! CAACGAATCGTCGTTTTTAA+GGG + chr7_1:11750589-11750608 None:intergenic 35.0%
!!! TCAACGAATCGTCGTTTTTA+AGG + chr7_1:11750590-11750609 None:intergenic 35.0%
! ATGGCACGTATTTTCTTTTG+CGG - chr7_1:11750744-11750763 Msa1009750:intron 35.0%
! CAAGGAATCGTGGTTTTTAA+GGG + chr7_1:11750776-11750795 None:intergenic 35.0%
! TCAAGGAATCGTGGTTTTTA+AGG + chr7_1:11750777-11750796 None:intergenic 35.0%
TTGTAAGATTCAAGGAATCG+TGG + chr7_1:11750786-11750805 None:intergenic 35.0%
TCTTGGGTTCAAAAGATAGA+TGG - chr7_1:11750835-11750854 Msa1009750:intron 35.0%
ATAGATGGTACTAGGTTACA+AGG - chr7_1:11750850-11750869 Msa1009750:intron 35.0%
TACAAGGACAATGACATTGT+AGG - chr7_1:11750866-11750885 Msa1009750:intron 35.0%
!!! TGGGTTGATTTTAGATCGGT+TGG + chr7_1:11744727-11744746 None:intergenic 40.0%
ACATCTTTGATCAGAAGTGG+CGG + chr7_1:11744966-11744985 None:intergenic 40.0%
ACTAACACAGATACGAACAC+CGG + chr7_1:11745068-11745087 None:intergenic 40.0%
!!! ACACCCACTTTTTGTAAACC+TGG - chr7_1:11745321-11745340 Msa1009750:CDS 40.0%
!!! CACCCACTTTTTGTAAACCT+GGG - chr7_1:11745322-11745341 Msa1009750:CDS 40.0%
TCAATTCGCGGCTAAAATTG+TGG - chr7_1:11745403-11745422 Msa1009750:intron 40.0%
CTTGATTAACCAGGTATCAC+AGG - chr7_1:11745516-11745535 Msa1009750:intron 40.0%
TTTCATACACCTGTGATACC+TGG + chr7_1:11745528-11745547 None:intergenic 40.0%
! TTGAGTTTTCTTCCAGGTTC+CGG - chr7_1:11745584-11745603 Msa1009750:intron 40.0%
AATACCGGTGATGTTGATGT+TGG - chr7_1:11745666-11745685 Msa1009750:intron 40.0%
!! GTTGGAGGTGTTTCAGATAA+TGG - chr7_1:11745684-11745703 Msa1009750:intron 40.0%
!! GGTTCTGAGGTTAGAGATTT+GGG - chr7_1:11745894-11745913 Msa1009750:intron 40.0%
ACACTTCATGCTGAGATTTC+TGG - chr7_1:11745930-11745949 Msa1009750:intron 40.0%
AATCTCGTAAAACTGCTCCT+CGG + chr7_1:11746009-11746028 None:intergenic 40.0%
!! TTGGAAAAGGGTATCGTATG+TGG - chr7_1:11746200-11746219 Msa1009750:intron 40.0%
!! TGGAAAAGGGTATCGTATGT+GGG - chr7_1:11746201-11746220 Msa1009750:intron 40.0%
! AGAGTCTAGATTTTTCGCAC+TGG + chr7_1:11746436-11746455 None:intergenic 40.0%
ACAACAGGGAATGTTGAAGA+CGG - chr7_1:11746659-11746678 Msa1009750:intron 40.0%
TCGAAGTTTGATCATCCTCT+TGG + chr7_1:11746694-11746713 None:intergenic 40.0%
GAGGATGCTTGAGAAATCTT+TGG - chr7_1:11746766-11746785 Msa1009750:intron 40.0%
AGGAAGAAGCAATCGAAGTT+TGG - chr7_1:11746891-11746910 Msa1009750:intron 40.0%
GGAAGAAGCAATCGAAGTTT+GGG - chr7_1:11746892-11746911 Msa1009750:intron 40.0%
TTCCAGCTTATCTCTAAGCT+CGG + chr7_1:11747032-11747051 None:intergenic 40.0%
ACAAGAAACTGAATGCCAGT+TGG - chr7_1:11747162-11747181 Msa1009750:intron 40.0%
AGACTTTCACATTCACCAAC+TGG + chr7_1:11747180-11747199 None:intergenic 40.0%
GTGTTCTCAAGTTAGAGACA+TGG - chr7_1:11747234-11747253 Msa1009750:intron 40.0%
AGAAAATCGAGCTAATGCTG+CGG - chr7_1:11747297-11747316 Msa1009750:intron 40.0%
GTTACTTGAAAGGCAGCTAA+AGG - chr7_1:11747414-11747433 Msa1009750:intron 40.0%
ACGAGGAAGTAAGTTTCTTG+AGG - chr7_1:11747632-11747651 Msa1009750:intron 40.0%
AGTAGATTGGAATGCTTGGA+GGG - chr7_1:11747655-11747674 Msa1009750:intron 40.0%
!! GAGAGAGCGTCTTAATAAGA+AGG - chr7_1:11747777-11747796 Msa1009750:intron 40.0%
ATGCAGATCAATTGATACCC+TGG + chr7_1:11747931-11747950 None:intergenic 40.0%
! AGGGTATCAATTGATCTGCA+TGG - chr7_1:11747930-11747949 Msa1009750:CDS 40.0%
ACAACTTTCAAAATGCCAGG+CGG - chr7_1:11748302-11748321 Msa1009750:CDS 40.0%
TCTGGCCTATTACCTGTTAT+AGG + chr7_1:11748342-11748361 None:intergenic 40.0%
! GAGAATGTTAGTCTCGAATC+TGG + chr7_1:11748360-11748379 None:intergenic 40.0%
TTCTCAAAGTAGTCATGCTC+AGG - chr7_1:11748375-11748394 Msa1009750:CDS 40.0%
TATATAGGTGAGGTGGGAAT+CGG + chr7_1:11748426-11748445 None:intergenic 40.0%
GTTAAACTCAAGGCTGAAAG+TGG + chr7_1:11748508-11748527 None:intergenic 40.0%
!! ACATTTAGCAGTGGTTTGCT+TGG - chr7_1:11748614-11748633 Msa1009750:CDS 40.0%
! AAGTTTGTTCTCGCTTGCTA+AGG + chr7_1:11748772-11748791 None:intergenic 40.0%
! AGCAAGCGAGAACAAACTTT+TGG - chr7_1:11748773-11748792 Msa1009750:CDS 40.0%
GACTTTGTCTTCTGAGTATG+AGG - chr7_1:11748848-11748867 Msa1009750:CDS 40.0%
! GCTTTGGATATGGTTTCTGT+TGG - chr7_1:11749007-11749026 Msa1009750:intron 40.0%
!!! AACTTCTGCCTGTTTTTGTC+TGG - chr7_1:11749033-11749052 Msa1009750:intron 40.0%
AGCTACTACCAGACAAAAAC+AGG + chr7_1:11749044-11749063 None:intergenic 40.0%
TTTCCCACTAGTTCATGGAT+TGG - chr7_1:11749085-11749104 Msa1009750:intron 40.0%
TCACCAATCCATGAACTAGT+GGG + chr7_1:11749091-11749110 None:intergenic 40.0%
ATCACCAATCCATGAACTAG+TGG + chr7_1:11749092-11749111 None:intergenic 40.0%
ATAGGATGTTTGGACATGAG+TGG + chr7_1:11749267-11749286 None:intergenic 40.0%
CTCATGTCCAAACATCCTAT+TGG - chr7_1:11749267-11749286 Msa1009750:intron 40.0%
AACATTCATGGCATGCTTCT+AGG - chr7_1:11749315-11749334 Msa1009750:intron 40.0%
! TCTTTTTATGGGAGTCTTGC+TGG - chr7_1:11749361-11749380 Msa1009750:intron 40.0%
!! CGTATCAACTTTTTCTTCGC+TGG - chr7_1:11749431-11749450 Msa1009750:intron 40.0%
TGTGCATAAAGCATGCTATG+TGG - chr7_1:11749542-11749561 Msa1009750:intron 40.0%
AATACTTACTCCCTTCGGTT+CGG + chr7_1:11749965-11749984 None:intergenic 40.0%
ACCGAAGGGAGTAAGTATTA+TGG - chr7_1:11749966-11749985 Msa1009750:CDS 40.0%
ACTCTCCTATGATTCAGTTC+AGG + chr7_1:11750010-11750029 None:intergenic 40.0%
AAAGGCAAGAGACTACTGTT+GGG - chr7_1:11750510-11750529 Msa1009750:intron 40.0%
GGGAAATGACATCATACGAA+AGG - chr7_1:11750556-11750575 Msa1009750:intron 40.0%
GAATCCTTACAAGTGCAGTA+TGG - chr7_1:11750608-11750627 Msa1009750:intron 40.0%
ATCACCATACTGCACTTGTA+AGG + chr7_1:11750615-11750634 None:intergenic 40.0%
TGTACTAGGTTACAAGGACA+CGG - chr7_1:11750670-11750689 Msa1009750:intron 40.0%
CGCCCAGGTTTACAAAAAGT+GGG + chr7_1:11745327-11745346 None:intergenic 45.0%
TCGCCCAGGTTTACAAAAAG+TGG + chr7_1:11745328-11745347 None:intergenic 45.0%
! ACTATTGTTGTTCCGGAACC+TGG + chr7_1:11745599-11745618 None:intergenic 45.0%
ACCTCCAACATCAACATCAC+CGG + chr7_1:11745673-11745692 None:intergenic 45.0%
!! TGATTTGTTATGTGGGGTGC+TGG - chr7_1:11745872-11745891 Msa1009750:intron 45.0%
!! GATTTGTTATGTGGGGTGCT+GGG - chr7_1:11745873-11745892 Msa1009750:intron 45.0%
!! GGGTTCTGAGGTTAGAGATT+TGG - chr7_1:11745893-11745912 Msa1009750:intron 45.0%
CTTTGAACGATTGGCAAGAG+AGG - chr7_1:11745973-11745992 Msa1009750:intron 45.0%
!! GGAAAAGGGTATCGTATGTG+GGG - chr7_1:11746202-11746221 Msa1009750:intron 45.0%
ATCCGAGCTTAGAGATAAGC+TGG - chr7_1:11747027-11747046 Msa1009750:intron 45.0%
GAGGAGTAGATTGGAATGCT+TGG - chr7_1:11747651-11747670 Msa1009750:intron 45.0%
GAGTAGATTGGAATGCTTGG+AGG - chr7_1:11747654-11747673 Msa1009750:intron 45.0%
! TTTGCTGACACAGTTGGCTT+TGG - chr7_1:11747753-11747772 Msa1009750:intron 45.0%
TGTGTCAACAAGAGGGGAAT+AGG - chr7_1:11747963-11747982 Msa1009750:CDS 45.0%
AGGGGAATAGGAAGATTGTC+AGG - chr7_1:11747975-11747994 Msa1009750:CDS 45.0%
!! TGGTTTGCTTGGCTGATGAT+GGG - chr7_1:11748625-11748644 Msa1009750:CDS 45.0%
!! TTGGCTGATGATGGGATGTA+TGG - chr7_1:11748633-11748652 Msa1009750:CDS 45.0%
AGGAGGATAGCTGCAAGTAA+AGG + chr7_1:11748752-11748771 None:intergenic 45.0%
! TTTGTTCTCGCTTGCTAAGG+AGG + chr7_1:11748769-11748788 None:intergenic 45.0%
GCTATGCTGCTGCTATTGTA+TGG - chr7_1:11748985-11749004 Msa1009750:intron 45.0%
CTGCTGCTATTGTATGGCTT+TGG - chr7_1:11748991-11749010 Msa1009750:intron 45.0%
AGTACTTGGCATAGAGTGCA+TGG - chr7_1:11749499-11749518 Msa1009750:intron 45.0%
ACTATCTGTCCGCATTGTAC+AGG + chr7_1:11749647-11749666 None:intergenic 45.0%
TATAACAGAGACCGAACCGA+AGG - chr7_1:11749951-11749970 Msa1009750:CDS 45.0%
ATAACAGAGACCGAACCGAA+GGG - chr7_1:11749952-11749971 Msa1009750:CDS 45.0%
TGGCACCTGAACTGAATCAT+AGG - chr7_1:11750002-11750021 Msa1009750:exon 45.0%
!! TTTTCGATGTCTTGTTCCCC+TGG + chr7_1:11750285-11750304 None:intergenic 45.0%
ACTGTGAGGAGAATTGATGC+AGG - chr7_1:11750358-11750377 Msa1009750:intron 45.0%
ACAGAAAGGTCACAGCTGAA+AGG + chr7_1:11750429-11750448 None:intergenic 45.0%
GAGAAAGGTCGATCTCTTCA+TGG + chr7_1:11750481-11750500 None:intergenic 45.0%
GAAAGGCAAGAGACTACTGT+TGG - chr7_1:11750509-11750528 Msa1009750:intron 45.0%
ACTACTGTTGGGATCTAAGC+TGG - chr7_1:11750521-11750540 Msa1009750:intron 45.0%
CTACTGTTGGGATCTAAGCT+GGG - chr7_1:11750522-11750541 Msa1009750:intron 45.0%
!! TTACAAAAAAAAAATATTAA+TGG + chr7_1:11744818-11744837 None:intergenic 5.0%
!!! TTAAATATTTTTCTTTTTAT+GGG - chr7_1:11749350-11749369 Msa1009750:intron 5.0%
ATCAGAAGTGGCGGTAGTGT+CGG + chr7_1:11744957-11744976 None:intergenic 50.0%
!! CACTGTAGCATTGGTGTGTC+CGG - chr7_1:11745255-11745274 Msa1009750:CDS 50.0%
ACCGGTGATGTTGATGTTGG+AGG - chr7_1:11745669-11745688 Msa1009750:intron 50.0%
GAACGATTGGCAAGAGAGGT+TGG - chr7_1:11745977-11745996 Msa1009750:intron 50.0%
! AGAGAGGTTGGTTGAATCCG+AGG - chr7_1:11745989-11746008 Msa1009750:intron 50.0%
ACAGGGAATGTTGAAGACGG+TGG - chr7_1:11746662-11746681 Msa1009750:intron 50.0%
AGACGGTGGAAATGTCCAAG+AGG - chr7_1:11746676-11746695 Msa1009750:intron 50.0%
AATGCGCGTGAGATCCTGAA+GGG - chr7_1:11746935-11746954 Msa1009750:intron 50.0%
! GACTGATTTACAGCTGCAGC+AGG - chr7_1:11747438-11747457 Msa1009750:intron 50.0%
TGCACTGTCAGCTAGACTCT+CGG + chr7_1:11747569-11747588 None:intergenic 50.0%
GGAAGATTGTCAGGAGCCTA+TGG - chr7_1:11747984-11748003 Msa1009750:CDS 50.0%
TTGTCAGGAGCCTATGGTCT+AGG - chr7_1:11747990-11748009 Msa1009750:CDS 50.0%
CACTCAAGTGGTCAGTAGTG+TGG + chr7_1:11748243-11748262 None:intergenic 50.0%
CACACTACTGACCACTTGAG+TGG - chr7_1:11748241-11748260 Msa1009750:CDS 50.0%
ACTGACCACTTGAGTGGTGT+AGG - chr7_1:11748247-11748266 Msa1009750:CDS 50.0%
GAAAGCCTACACCACTCAAG+TGG + chr7_1:11748255-11748274 None:intergenic 50.0%
TGCCAGGCGGTCCTTAAAAA+TGG - chr7_1:11748315-11748334 Msa1009750:CDS 50.0%
!! GTCCATTTTTAAGGACCGCC+TGG + chr7_1:11748320-11748339 None:intergenic 50.0%
AGTCATGCTCAGGTCTTGCA+AGG - chr7_1:11748385-11748404 Msa1009750:CDS 50.0%
!! GTGGTTTGCTTGGCTGATGA+TGG - chr7_1:11748624-11748643 Msa1009750:CDS 50.0%
!! GCTGATGATGGGATGTATGG+AGG - chr7_1:11748636-11748655 Msa1009750:CDS 50.0%
GCATAGAGTGCATGGTTTCC+TGG - chr7_1:11749507-11749526 Msa1009750:intron 50.0%
TTGCTTACAATCGAGACCGG+AGG + chr7_1:11749684-11749703 None:intergenic 50.0%
! CAGTGTCGAGTAGTGCTCTA+TGG + chr7_1:11750039-11750058 None:intergenic 50.0%
TACCAGATGTTGGGACTGTG+AGG - chr7_1:11750344-11750363 Msa1009750:intron 50.0%
TAAGCTGGGACTTGCGGATT+GGG - chr7_1:11750536-11750555 Msa1009750:intron 50.0%
! GTATGGTGATGCAGCTGTAG+AGG - chr7_1:11750625-11750644 Msa1009750:intron 50.0%
GTCGTGTTCGTGTCAGACAC+CGG + chr7_1:11745277-11745296 None:intergenic 55.0%
TTGTAAACCTGGGCGACACC+TGG - chr7_1:11745332-11745351 Msa1009750:CDS 55.0%
! TGATTAACCAGGTGTCGCCC+AGG + chr7_1:11745342-11745361 None:intergenic 55.0%
CAATGCGCGTGAGATCCTGA+AGG - chr7_1:11746934-11746953 Msa1009750:intron 55.0%
GAGTCTAGCTGACAGTGCAG+AGG - chr7_1:11747570-11747589 Msa1009750:intron 55.0%
GGAGGGATCACTGCAGAAAG+CGG - chr7_1:11747672-11747691 Msa1009750:intron 55.0%
CCTGACGTTGCCTAGACCAT+AGG + chr7_1:11748003-11748022 None:intergenic 55.0%
CCTATGGTCTAGGCAACGTC+AGG - chr7_1:11748000-11748019 Msa1009750:CDS 55.0%
GGAATCGGTAGGCTAGGCTT+GGG + chr7_1:11748411-11748430 None:intergenic 55.0%
TAGGTGAGGTGGGAATCGGT+AGG + chr7_1:11748422-11748441 None:intergenic 55.0%
CCGCATTGTACAGGTGAGGA+GGG + chr7_1:11749638-11749657 None:intergenic 55.0%
CCCTCCTCACCTGTACAATG+CGG - chr7_1:11749635-11749654 Msa1009750:CDS 55.0%
TCCGCATTGTACAGGTGAGG+AGG + chr7_1:11749639-11749658 None:intergenic 55.0%
CTGTCCGCATTGTACAGGTG+AGG + chr7_1:11749642-11749661 None:intergenic 55.0%
CTCCTCACAGTCCCAACATC+TGG + chr7_1:11750349-11750368 None:intergenic 55.0%
GGGATCTAAGCTGGGACTTG+CGG - chr7_1:11750530-11750549 Msa1009750:intron 55.0%
CTAAGCTGGGACTTGCGGAT+TGG - chr7_1:11750535-11750554 Msa1009750:intron 55.0%
ATGCAGCTGTAGAGGATCCC+AGG - chr7_1:11750633-11750652 Msa1009750:intron 55.0%
!! GAAGTATGGTGCTGCAGCTC+TGG - chr7_1:11750808-11750827 Msa1009750:intron 55.0%
!! CTGCAGCTCTGGAGGATCTT+GGG - chr7_1:11750819-11750838 Msa1009750:intron 55.0%
CCGGACACTAACACCGATCC+CGG + chr7_1:11745049-11745068 None:intergenic 60.0%
!! CCGGGATCGGTGTTAGTGTC+CGG - chr7_1:11745046-11745065 Msa1009750:three_prime_UTR 60.0%
ACACTCACTCGCGCGACACA+TGG - chr7_1:11745116-11745135 Msa1009750:three_prime_UTR 60.0%
!! ATGTGGGGTGCTGGGTTCTG+AGG - chr7_1:11745881-11745900 Msa1009750:intron 60.0%
GGGATCACTGCAGAAAGCGG+AGG - chr7_1:11747675-11747694 Msa1009750:intron 60.0%
GGGAATCGGTAGGCTAGGCT+TGG + chr7_1:11748412-11748431 None:intergenic 60.0%
GAGGTGGGAATCGGTAGGCT+AGG + chr7_1:11748417-11748436 None:intergenic 60.0%
!! GTATGGTGCTGCAGCTCTGG+AGG - chr7_1:11750811-11750830 Msa1009750:intron 60.0%
!! GCTGCAGCTCTGGAGGATCT+TGG - chr7_1:11750818-11750837 Msa1009750:intron 60.0%
CAGCAGGCAGTAGCGTCTGC+TGG - chr7_1:11747454-11747473 Msa1009750:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 11744702 11750949 11744702 ID=Msa1009750;Name=Msa1009750
chr7_1 mRNA 11744702 11750949 11744702 ID=Msa1009750-mRNA-1;Parent=Msa1009750;Name=Msa1009750-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104|1|1|1|0.75|0.6|5|466|627
chr7_1 exon 11744702 11745365 11744702 ID=Msa1009750-mRNA-1:exon:3100;Parent=Msa1009750-mRNA-1
chr7_1 exon 11746782 11746889 11746782 ID=Msa1009750-mRNA-1:exon:3099;Parent=Msa1009750-mRNA-1
chr7_1 exon 11747853 11748985 11747853 ID=Msa1009750-mRNA-1:exon:3098;Parent=Msa1009750-mRNA-1
chr7_1 exon 11749565 11750051 11749565 ID=Msa1009750-mRNA-1:exon:3097;Parent=Msa1009750-mRNA-1
chr7_1 exon 11750888 11750949 11750888 ID=Msa1009750-mRNA-1:exon:3096;Parent=Msa1009750-mRNA-1
chr7_1 five_prime_UTR 11750888 11750949 11750888 ID=Msa1009750-mRNA-1:five_prime_utr;Parent=Msa1009750-mRNA-1
chr7_1 five_prime_UTR 11750010 11750051 11750010 ID=Msa1009750-mRNA-1:five_prime_utr;Parent=Msa1009750-mRNA-1
chr7_1 CDS 11749565 11750009 11749565 ID=Msa1009750-mRNA-1:cds;Parent=Msa1009750-mRNA-1
chr7_1 CDS 11747853 11748985 11747853 ID=Msa1009750-mRNA-1:cds;Parent=Msa1009750-mRNA-1
chr7_1 CDS 11746782 11746889 11746782 ID=Msa1009750-mRNA-1:cds;Parent=Msa1009750-mRNA-1
chr7_1 CDS 11745168 11745365 11745168 ID=Msa1009750-mRNA-1:cds;Parent=Msa1009750-mRNA-1
chr7_1 three_prime_UTR 11744702 11745167 11744702 ID=Msa1009750-mRNA-1:three_prime_utr;Parent=Msa1009750-mRNA-1
Gene Sequence

>Msa1009750

ATGGAAACTCAAAGTGTTGAAGATAATACCGGTGATGTTGATGTTGGAGGTGTTTCAGATAATGGAGAAGTTATTGTGGATTTTGAAATGAGTGTGGTATATTTCTCTGAGAAAGTTTCAAATTTGAGTATTTTTATGATGAATTTGGAAACTTTGGAAGGTGAATTAGAGGGTTTAGTTTGTGATGAAGAAAACATCGATATGGATTGTGTTTTAAAGGGTTTTGAGTTTGATTTGTTATGTGGGGTGCTGGGTTCTGAGGTTAGAGATTTGGGTTTGTTTTTGGATACACTTCATGCTGAGATTTCTGGTTCTAGAGAGAGAGATTCTTCTTTGAACGATTGGCAAGAGAGGTTGGTTGAATCCGAGGAGCAGTTTTACGAGATTAAGAAACAATCTTTTAGTTTTGAAAGGACTTTGTCTTCTTATAAAAAGGAAGAGAATGGGAATGTTGAAGACGGTGGAAATGTCCAAGAGGATGATCAAACTTCGAATGTAAACAACATGATGAACATGCAAACGACTGAGCAACATAGAAACATTTTGAGGATGCTTGAGAAATCTTTGGCAAATGAAATAGATCTCGAGAAGAATTTCAACGACTCGAAGAAAATTGAAGAAAAGCTAAATCTGAGGATCCTTTCTTTAGAAGACGAGTTAATTCAAACAGAGGAAGAAGCAATCGAAGTTTGGGAAAGATTGTTTGAGGCAGACAATGCGCGTGAGATCCTGAAGGGAATTTCAAATGAAGTGTTGGCTAAACTCAAGCTTTCTCAGTTCAATTTGATTGGTTTAAGAAAAAGTGAATCCGAGCTTAGAGATAAGCTGGAAACTTCTATAGAGCAATTGAAAAATAGAGACGTTAATTTGGAAAAGATCGAAAGCAGCACAGCTGAAGCAGTTAATTTAGGCGACAAAGTGTGCTCACTTGAGAAGCAGCTACAAGAAACTGAATGCCAGTTGGTGAATGTGAAAGTCTCTGCCGATGAATATCAGCAACAGTATAATGTTGTGTGTTCTCAAGTTAGAGACATGGATAACCTTATCGTAGAATTGAAAGAAAATGCAAAAAATGCAGAAAATCGAGCTAATGCTGCGGAAGTTCAGTGTAAAAAATTGACGGAAACTAATGAAGAACTCAACAAGGAGCTGACTCTTTTAAAAGACTGTGGTATCACATCTGAGAGTGTAGAGTTACTTGAAAGGCAGCTAAAGGAGACTGATTTACAGCTGCAGCAGGCAGTAGCGTCTGCTGGAGCTAGTGAAGAGAAGCAAAAGATGTTGTGTTACACAATTGAAGATATGGAACATGTGATAAAGGATCTTAAGTCAAAGGTTTCTAAAGCCGAGAGTCTAGCTGACAGTGCAGAGGACAAGTGTATCATATTATCTGAATCTAATGCTGATTTAAACGAGGAAGTAAGTTTCTTGAGGAGTAGATTGGAATGCTTGGAGGGATCACTGCAGAAAGCGGAGGAAGCGAAAATGACAACTGCAAAGAATATTGGAAAGCAAACCAAAGTTTTTAAAAGTTTGCTGACACAGTTGGCTTTGGAGAGAGAGCGTCTTAATAAGAAGCTATCCTCCTTAGCAAGCGAGAACAAACTTTTGGCAGTGAAACTGAAGCAAACATATAAGAAGGGTTCTTCTAAAGAAGTTAGTGCGACTTTGTCTTCTGAGTATGAGGGGAACAAGACATCGAAAAACTCATCTGCAAATGATAATGAAGTAAAGTCAGATTCAATACCAGATGTTGGGACTGTGAGGAGAATTGATGCAGGAGTTCTCACTTTTAAGCACTTATTGATATCATTGTTTGTCTTACTCCTTTCAGCTGTGACCTTTCTGTATTTCAAGGACTTGAATGTTGATGTCAGTCCATGA

Protein sequence

>Msa1009750

METQSVEDNTGDVDVGGVSDNGEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENIDMDCVLKGFEFDLLCGVLGSEVRDLGLFLDTLHAEISGSRERDSSLNDWQERLVESEEQFYEIKKQSFSFERTLSSYKKEENGNVEDGGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLEKSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERLFEADNAREILKGISNEVLAKLKLSQFNLIGLRKSESELRDKLETSIEQLKNRDVNLEKIESSTAEAVNLGDKVCSLEKQLQETECQLVNVKVSADEYQQQYNVVCSQVRDMDNLIVELKENAKNAENRANAAEVQCKKLTETNEELNKELTLLKDCGITSESVELLERQLKETDLQLQQAVASAGASEEKQKMLCYTIEDMEHVIKDLKSKVSKAESLADSAEDKCIILSESNADLNEEVSFLRSRLECLEGSLQKAEEAKMTTAKNIGKQTKVFKSLLTQLALERERLNKKLSSLASENKLLAVKLKQTYKKGSSKEVSATLSSEYEGNKTSKNSSANDNEVKSDSIPDVGTVRRIDAGVLTFKHLLISLFVLLLSAVTFLYFKDLNVDVSP*