AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1097820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097820 MtrunA17_Chr7g0220541 96.160 625 23 1 1 625 1 624 0.0 1187
Msa1097820 MtrunA17_Chr3g0123611 50.356 562 225 9 7 523 17 569 1.35e-144 432
Msa1097820 MtrunA17_Chr6g0470981 38.801 567 301 11 9 544 15 566 7.12e-91 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097820 AT5G11390.1 38.311 663 351 12 10 616 37 697 6.48e-116 362
Msa1097820 AT1G68910.1 32.848 618 369 11 24 615 26 623 1.67e-79 264
Msa1097820 AT1G68910.2 34.574 564 326 10 24 564 26 569 2.52e-78 260
Msa1097820 AT1G68910.3 34.574 564 326 10 24 564 26 569 2.52e-78 260

Find 122 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCAATTGAAGAATGAAAT+TGG 0.147225 7_3:+23945301 None:intergenic
ACACTTCATGCTGAGATTTC+TGG 0.165736 7_3:-23944114 Msa1097820:CDS
ACCTAGTACAATATATTTCT+TGG 0.234945 7_3:+23939387 None:intergenic
GACTTTGTCTTCTTATAAAA+AGG 0.245052 7_3:-23943989 Msa1097820:CDS
GGTTCTGAGGTTAGAGATTT+GGG 0.265934 7_3:-23944150 Msa1097820:CDS
GGGTTCTGAGGTTAGAGATT+TGG 0.291296 7_3:-23944151 Msa1097820:CDS
AGGAAGAAGCAATCGAAGTT+TGG 0.300071 7_3:-23943153 Msa1097820:CDS
TGATTTGTTATGTGGGGTGC+TGG 0.301024 7_3:-23944172 Msa1097820:CDS
AACTTCAACTATTGTTGTTC+CGG 0.307411 7_3:+23944441 None:intergenic
ATGACAACTGCAAAGAATAT+TGG 0.308994 7_3:-23942338 Msa1097820:CDS
ACAGCTGAAGCAGTTAATTT+AGG 0.314252 7_3:-23942935 Msa1097820:CDS
TGATGAAGAAAACATCGATA+TGG 0.316839 7_3:-23944220 Msa1097820:CDS
GCTGCAGCTCTGGAGGATCT+TGG 0.318277 7_3:-23939226 Msa1097820:three_prime_UTR
TATGATGAATTTGGAAACTT+TGG 0.334665 7_3:-23944268 Msa1097820:CDS
CTTTCTCAGTTCAATTTGAT+TGG 0.338086 7_3:-23943055 Msa1097820:CDS
GAGGATGCTTGAGAAATCTT+TGG 0.339008 7_3:-23943278 Msa1097820:CDS
GTTGGAGGTGTTTCAGATAA+TGG 0.340110 7_3:-23944360 Msa1097820:CDS
TGAATCTTACAATTGAAGTA+TGG 0.346030 7_3:-23939250 Msa1097820:three_prime_UTR
CTTCATTTGAAATTCCCTTC+AGG 0.351204 7_3:+23943095 None:intergenic
CAGCAGGCAGTAGCGTCTGC+TGG 0.352082 7_3:-23942590 Msa1097820:CDS
ACCCAATTTCATTCTTCAAT+TGG 0.353122 7_3:-23945303 Msa1097820:intron
TTTGAGTTTGATTTGTTATG+TGG 0.355398 7_3:-23944180 Msa1097820:CDS
CTGCAGCTCTGGAGGATCTT+GGG 0.358007 7_3:-23939225 Msa1097820:three_prime_UTR
TTTGCTGACACAGTTGGCTT+TGG 0.366680 7_3:-23942291 Msa1097820:CDS
AACTTTGGAAGGTGAATTAG+AGG 0.372115 7_3:-23944253 Msa1097820:CDS
AGCAAGCGAGAACAAACTTT+TGG 0.375212 7_3:-23941271 Msa1097820:CDS
TGTGACCTTTCTGTATTTCA+AGG 0.376220 7_3:-23939609 Msa1097820:CDS
GTGTTACACAATTGAAGATA+TGG 0.376803 7_3:-23942540 Msa1097820:CDS
TTGAGTTTGATTTGTTATGT+GGG 0.386095 7_3:-23944179 Msa1097820:CDS
AAGTTTCTTGAGGAGTAGAT+TGG 0.388441 7_3:-23942402 Msa1097820:CDS
TAAGCTGGGACTTGCGGATT+GGG 0.399216 7_3:-23939508 Msa1097820:three_prime_UTR
TTTCTTTCAATTCTACGATA+AGG 0.399271 7_3:+23942783 None:intergenic
GAGATTCTTCTTTGAACGAT+TGG 0.400387 7_3:-23944080 Msa1097820:CDS
GGAAGAAGCAATCGAAGTTT+GGG 0.409580 7_3:-23943152 Msa1097820:CDS
AGATATGGAACATGTGATAA+AGG 0.420057 7_3:-23942525 Msa1097820:CDS
GAAGTATGGTGCTGCAGCTC+TGG 0.421772 7_3:-23939236 Msa1097820:three_prime_UTR
ACCAATTGAAGAATGAAATT+GGG 0.423735 7_3:+23945302 None:intergenic
TCGAAGTTTGATCATCCTCT+TGG 0.428130 7_3:+23943353 None:intergenic
CTCCTCACAGTCCCAACATC+TGG 0.434733 7_3:+23939698 None:intergenic
GAGAAAGGTCGATCTCTTCA+TGG 0.436528 7_3:+23939566 None:intergenic
TACTTCAATTGTAAGATTCA+AGG 0.455305 7_3:+23939253 None:intergenic
GGGAATTTCAAATGAAGTGT+TGG 0.466188 7_3:-23943089 Msa1097820:CDS
TTCCAGCTTATCTCTAAGCT+CGG 0.467512 7_3:+23943015 None:intergenic
TCTTGGGTTCAAAAGATAGA+TGG 0.471453 7_3:-23939209 Msa1097820:three_prime_UTR
AGACTTTCACATTCACCAAC+TGG 0.472930 7_3:+23942867 None:intergenic
TACAATATATTTCTTGGACC+TGG 0.473885 7_3:+23939393 None:intergenic
ACTACTGTTGGGATCTAAGC+TGG 0.474414 7_3:-23939523 Msa1097820:three_prime_UTR
CTAAGCTGGGACTTGCGGAT+TGG 0.475146 7_3:-23939509 Msa1097820:three_prime_UTR
ACTGAAGCAAACATATAAGA+AGG 0.478500 7_3:-23941241 Msa1097820:CDS
ATCACCATACTGCACTTGTA+AGG 0.488815 7_3:+23939432 None:intergenic
GACTTTGTCTTCTGAGTATG+AGG 0.489364 7_3:-23941196 Msa1097820:intron
GAATCCTTACAAGTGCAGTA+TGG 0.489890 7_3:-23939436 Msa1097820:three_prime_UTR
ATCCGAGCTTAGAGATAAGC+TGG 0.490624 7_3:-23943017 Msa1097820:CDS
TACAAGGACAATGACATTGT+AGG 0.493849 7_3:-23939178 Msa1097820:three_prime_UTR
TTAACTCGTCTTCTAAAGAA+AGG 0.496891 7_3:+23943185 None:intergenic
GATTTGTTATGTGGGGTGCT+GGG 0.499035 7_3:-23944171 Msa1097820:CDS
CAGATTCAATACCAGATGTT+GGG 0.500850 7_3:-23939709 Msa1097820:CDS
GACTGATTTACAGCTGCAGC+AGG 0.504375 7_3:-23942606 Msa1097820:CDS
ACAATATATTTCTTGGACCT+GGG 0.507168 7_3:+23939394 None:intergenic
ATGTGGGGTGCTGGGTTCTG+AGG 0.507959 7_3:-23944163 Msa1097820:CDS
GAACGATTGGCAAGAGAGGT+TGG 0.512420 7_3:-23944067 Msa1097820:CDS
GTTACTTGAAAGGCAGCTAA+AGG 0.514392 7_3:-23942630 Msa1097820:CDS
GAGAGAGCGTCTTAATAAGA+AGG 0.518789 7_3:-23942267 Msa1097820:intron
GAGTAGATTGGAATGCTTGG+AGG 0.519165 7_3:-23942390 Msa1097820:CDS
TCAGATTCAATACCAGATGT+TGG 0.521726 7_3:-23939710 Msa1097820:CDS
AAGTTTGTTCTCGCTTGCTA+AGG 0.523128 7_3:+23941275 None:intergenic
GGGATCTAAGCTGGGACTTG+CGG 0.524792 7_3:-23939514 Msa1097820:three_prime_UTR
TTTGTTCTCGCTTGCTAAGG+AGG 0.527329 7_3:+23941278 None:intergenic
GATAAAGGATCTTAAGTCAA+AGG 0.527438 7_3:-23942510 Msa1097820:CDS
TAAAAGTTTGCTGACACAGT+TGG 0.530211 7_3:-23942297 Msa1097820:CDS
GAAAGGCAAGAGACTACTGT+TGG 0.530914 7_3:-23939535 Msa1097820:three_prime_UTR
CTTTGAACGATTGGCAAGAG+AGG 0.530964 7_3:-23944071 Msa1097820:CDS
CAAAGTGTTGAAGATAATAC+CGG 0.537217 7_3:-23944393 Msa1097820:CDS
GAGGAGTAGATTGGAATGCT+TGG 0.538497 7_3:-23942393 Msa1097820:CDS
AGATAATGGAGAAGTTATTG+TGG 0.538820 7_3:-23944346 Msa1097820:CDS
ATGCAGCTGTAGAGGATCCC+AGG 0.544833 7_3:-23939411 Msa1097820:three_prime_UTR
TCCAAGAAATATATTGTACT+AGG 0.549748 7_3:-23939388 Msa1097820:three_prime_UTR
ACGAGGAAGTAAGTTTCTTG+AGG 0.550455 7_3:-23942412 Msa1097820:CDS
CAAGTCCTTGAAATACAGAA+AGG 0.560321 7_3:+23939604 None:intergenic
AGTTTGGGAAAGATTGTTTG+AGG 0.560777 7_3:-23943137 Msa1097820:CDS
ATGAATTTGGAAACTTTGGA+AGG 0.568364 7_3:-23944264 Msa1097820:CDS
ATACTGTTGCTGATATTCAT+CGG 0.568555 7_3:+23942841 None:intergenic
TGAGTTTGATTTGTTATGTG+GGG 0.573199 7_3:-23944178 Msa1097820:CDS
GTATGGTGCTGCAGCTCTGG+AGG 0.578266 7_3:-23939233 Msa1097820:three_prime_UTR
CTACTGTTGGGATCTAAGCT+GGG 0.580716 7_3:-23939522 Msa1097820:three_prime_UTR
ACCTCCAACATCAACATCAC+CGG 0.581822 7_3:+23944374 None:intergenic
ACCGGTGATGTTGATGTTGG+AGG 0.584105 7_3:-23944375 Msa1097820:CDS
AGTAGATTGGAATGCTTGGA+GGG 0.587529 7_3:-23942389 Msa1097820:CDS
TTCAAAAGATAGATGGTACT+AGG 0.589285 7_3:-23939202 Msa1097820:three_prime_UTR
TGCACTGTCAGCTAGACTCT+CGG 0.590430 7_3:+23942478 None:intergenic
ATATATTGTACTAGGTTACA+AGG 0.596837 7_3:-23939380 Msa1097820:three_prime_UTR
AATACCGGTGATGTTGATGT+TGG 0.597119 7_3:-23944378 Msa1097820:CDS
AGAGAGGTTGGTTGAATCCG+AGG 0.600549 7_3:-23944055 Msa1097820:CDS
TTGTAAGATTCAAGGAATCG+TGG 0.601393 7_3:+23939261 None:intergenic
ACAGAAAGGTCACAGCTGAA+AGG 0.601509 7_3:+23939618 None:intergenic
AAAGGCAAGAGACTACTGTT+GGG 0.602120 7_3:-23939534 Msa1097820:three_prime_UTR
ATAGATGGTACTAGGTTACA+AGG 0.604980 7_3:-23939194 Msa1097820:three_prime_UTR
GGAGGGATCACTGCAGAAAG+CGG 0.612584 7_3:-23942372 Msa1097820:CDS
AGAGTGTAGAGTTACTTGAA+AGG 0.618606 7_3:-23942640 Msa1097820:CDS
CTGAAGCAAACATATAAGAA+GGG 0.621626 7_3:-23941240 Msa1097820:CDS
GTGTTCTCAAGTTAGAGACA+TGG 0.624574 7_3:-23942810 Msa1097820:CDS
GAGTCTAGCTGACAGTGCAG+AGG 0.624641 7_3:-23942474 Msa1097820:CDS
AATCTCGTAAAACTGCTCCT+CGG 0.624682 7_3:+23944038 None:intergenic
GGGAAATGACATCATACGAA+AGG 0.624990 7_3:-23939488 Msa1097820:three_prime_UTR
TTGAAGAAAAGCTAAATCTG+AGG 0.628560 7_3:-23943210 Msa1097820:CDS
TACCAGATGTTGGGACTGTG+AGG 0.630861 7_3:-23939700 Msa1097820:CDS
AGACGAGTTAATTCAAACAG+AGG 0.633790 7_3:-23943173 Msa1097820:CDS
GTATGGTGATGCAGCTGTAG+AGG 0.637203 7_3:-23939419 Msa1097820:three_prime_UTR
ACAAGAAACTGAATGCCAGT+TGG 0.639494 7_3:-23942882 Msa1097820:CDS
GTGATGAATATTTCAGACAA+CGG 0.643744 7_3:+23945345 None:intergenic
ACTTTGGAAGGTGAATTAGA+GGG 0.646483 7_3:-23944252 Msa1097820:CDS
ACTGTGAGGAGAATTGATGC+AGG 0.649793 7_3:-23939686 Msa1097820:CDS
CAATGCGCGTGAGATCCTGA+AGG 0.651405 7_3:-23943110 Msa1097820:CDS
AACTAATGAAGAACTCAACA+AGG 0.662178 7_3:-23942699 Msa1097820:CDS
GGGATCACTGCAGAAAGCGG+AGG 0.666512 7_3:-23942369 Msa1097820:CDS
ACAACAGGGAATGTTGAAGA+CGG 0.671738 7_3:-23943385 Msa1097820:intron
AATGCGCGTGAGATCCTGAA+GGG 0.678003 7_3:-23943109 Msa1097820:CDS
TGTACTAGGTTACAAGGACA+CGG 0.689484 7_3:-23939374 Msa1097820:three_prime_UTR
ATCTAATGCTGATTTAAACG+AGG 0.690867 7_3:-23942429 Msa1097820:CDS
ACAGGGAATGTTGAAGACGG+TGG 0.694865 7_3:-23943382 Msa1097820:intron
AGACGGTGGAAATGTCCAAG+AGG 0.721239 7_3:-23943368 Msa1097820:CDS
AGAAAATCGAGCTAATGCTG+CGG 0.733775 7_3:-23942747 Msa1097820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTTAAAATTTTTAT+CGG - chr7_3:23939443-23939462 Msa1097820:three_prime_UTR 0.0%
!!! TTGTTTTAAAAAATAAGAAA+AGG - chr7_3:23940732-23940751 Msa1097820:intron 10.0%
!! TTATTAGAAATGAAAATTTA+GGG + chr7_3:23941017-23941036 None:intergenic 10.0%
!! TTTATTAGAAATGAAAATTT+AGG + chr7_3:23941018-23941037 None:intergenic 10.0%
!! TTTACCATTATTATTATATA+AGG - chr7_3:23942532-23942551 Msa1097820:CDS 10.0%
!! AAAACCTTATATAATAATAA+TGG + chr7_3:23942539-23942558 None:intergenic 10.0%
!!! GTTAAATATTTTTCTTTTTA+TGG - chr7_3:23943765-23943784 Msa1097820:intron 10.0%
!! ATTCAAATACTGAAATATAT+AGG + chr7_3:23942857-23942876 None:intergenic 15.0%
!!! CATAAATGTTTAAAACAAAT+GGG + chr7_3:23943081-23943100 None:intergenic 15.0%
!!! ACATAAATGTTTAAAACAAA+TGG + chr7_3:23943082-23943101 None:intergenic 15.0%
!!! ATATTTTGAAACAATTGTTA+AGG + chr7_3:23943655-23943674 None:intergenic 15.0%
!!! TACTATTTCTATTAAATTGT+TGG - chr7_3:23943992-23944011 Msa1097820:CDS 15.0%
!! AATAAATAAAGAACAATATC+AGG + chr7_3:23944538-23944557 None:intergenic 15.0%
!! ATTGTATTGTATTCACTTTA+TGG - chr7_3:23939289-23939308 Msa1097820:three_prime_UTR 20.0%
!!! TTTAAAATTTTTATCGGGAT+CGG - chr7_3:23939449-23939468 Msa1097820:three_prime_UTR 20.0%
!!! GAGTATTTTTATGATGAATT+TGG - chr7_3:23940183-23940202 Msa1097820:intron 20.0%
!!! AACAATCTTTTAGTTTTGAA+AGG - chr7_3:23940449-23940468 Msa1097820:intron 20.0%
!! ATATCACATGAAAATTAATG+TGG + chr7_3:23940645-23940664 None:intergenic 20.0%
!! ATAAAAATATTCTCATTGGT+CGG + chr7_3:23940794-23940813 None:intergenic 20.0%
!! TCAGATAAAAATATTCTCAT+TGG + chr7_3:23940798-23940817 None:intergenic 20.0%
!! TAATTCATATACACAATCAA+TGG + chr7_3:23940992-23941011 None:intergenic 20.0%
!! ATTAATCAACATAAATAACC+AGG - chr7_3:23942326-23942345 Msa1097820:CDS 20.0%
!! TTAATCAACATAAATAACCA+GGG - chr7_3:23942327-23942346 Msa1097820:CDS 20.0%
!!! GTATGTTTAAGTTACATAAA+AGG + chr7_3:23942592-23942611 None:intergenic 20.0%
!!! TGTTTGATCTATAGTTTTTT+TGG - chr7_3:23943591-23943610 Msa1097820:intron 20.0%
!! GAAAAATATTTAACTAAGCT+AGG + chr7_3:23943759-23943778 None:intergenic 20.0%
!! AATAAATGTAAAACAGTACT+TGG - chr7_3:23943901-23943920 Msa1097820:intron 20.0%
!! AATAGCATTAAATACAATGA+AGG + chr7_3:23944176-23944195 None:intergenic 20.0%
!!! GTAATCAAATTTTGTTTCAA+TGG - chr7_3:23945141-23945160 Msa1097820:intron 20.0%
!!! AAATTGGGTTGATTTTAGAT+CGG + chr7_3:23939146-23939165 None:intergenic 25.0%
! ACCAATTGAAGAATGAAATT+GGG + chr7_3:23939161-23939180 None:intergenic 25.0%
! TACCAATTGAAGAATGAAAT+TGG + chr7_3:23939162-23939181 None:intergenic 25.0%
! AATTGAAATACGCAATTGAA+GGG + chr7_3:23939195-23939214 None:intergenic 25.0%
! GTGAATACAATACAATATAC+TGG + chr7_3:23939285-23939304 None:intergenic 25.0%
!! TAGATTGTTACTTAACTTCA+TGG - chr7_3:23939591-23939610 Msa1097820:CDS 25.0%
!!! TAGATTGTTATTTCAATTCG+CGG - chr7_3:23939807-23939826 Msa1097820:intron 25.0%
!! ATTTTTACACTTGATTAACC+AGG - chr7_3:23939923-23939942 Msa1097820:intron 25.0%
!!! AATTTTTTGAGTTTTCTTCC+AGG - chr7_3:23939994-23940013 Msa1097820:intron 25.0%
!!! GTTTTTTACGATTAGAACAA+TGG - chr7_3:23940039-23940058 Msa1097820:intron 25.0%
! TATGATGAATTTGGAAACTT+TGG - chr7_3:23940192-23940211 Msa1097820:intron 25.0%
!!! GATATGGATTGTGTTTTAAA+GGG - chr7_3:23940256-23940275 Msa1097820:intron 25.0%
!!! TTTGAGTTTGATTTGTTATG+TGG - chr7_3:23940280-23940299 Msa1097820:intron 25.0%
!!! TTGAGTTTGATTTGTTATGT+GGG - chr7_3:23940281-23940300 Msa1097820:intron 25.0%
! GACTTTGTCTTCTTATAAAA+AGG - chr7_3:23940471-23940490 Msa1097820:intron 25.0%
! TCTTATAAAAAGGAAGAGAA+TGG - chr7_3:23940481-23940500 Msa1097820:intron 25.0%
! TTTCATTTAGTTGTTGGAAA+AGG - chr7_3:23940603-23940622 Msa1097820:intron 25.0%
! TTCATTTAGTTGTTGGAAAA+GGG - chr7_3:23940604-23940623 Msa1097820:intron 25.0%
! GAAAATCCAACACATAAAAA+AGG + chr7_3:23941051-23941070 None:intergenic 25.0%
! GAAAAATAGAGACGTTAATT+TGG - chr7_3:23941485-23941504 Msa1097820:intron 25.0%
! TTTCTTTCAATTCTACGATA+AGG + chr7_3:23941680-23941699 None:intergenic 25.0%
! AGTTCAGTGTAAAAAATTGA+CGG - chr7_3:23941737-23941756 Msa1097820:intron 25.0%
!!! CAGCAAACTTTTAAAAACTT+TGG + chr7_3:23942156-23942175 None:intergenic 25.0%
! TATTCAAGAGAGATATTATC+AGG + chr7_3:23942276-23942295 None:intergenic 25.0%
!! AGAAAATAAAAAGCATAGTC+TGG + chr7_3:23942448-23942467 None:intergenic 25.0%
!! GTTTAAGTTACATAAAAGGT+TGG + chr7_3:23942588-23942607 None:intergenic 25.0%
! AATACTGAAATATATAGGTG+AGG + chr7_3:23942852-23942871 None:intergenic 25.0%
! AAATCAAAGAGGAGAAAAAA+AGG + chr7_3:23942899-23942918 None:intergenic 25.0%
! TTAACAACTGTAGTTATGTA+TGG - chr7_3:23942939-23942958 Msa1097820:CDS 25.0%
!!! CTTCAATCAAGTTGATTTAT+AGG + chr7_3:23942997-23943016 None:intergenic 25.0%
! GTAAAACATTGTCTTGTATT+AGG - chr7_3:23943531-23943550 Msa1097820:intron 25.0%
!!! TTTTGAAACAATTGTTAAGG+AGG + chr7_3:23943652-23943671 None:intergenic 25.0%
! TTTCAATGTACTAACATTCA+TGG - chr7_3:23943719-23943738 Msa1097820:intron 25.0%
!!! AAAAGTTGATACGACATATA+AGG + chr7_3:23943840-23943859 None:intergenic 25.0%
!!! CATGAAACATTCATGTTTTT+TGG - chr7_3:23944124-23944143 Msa1097820:CDS 25.0%
! ATTATGGTATTATCTTCTGT+TGG - chr7_3:23944398-23944417 Msa1097820:CDS 25.0%
! AAAAAAAAGGACAATTTGGA+AGG + chr7_3:23944509-23944528 None:intergenic 25.0%
! AGGAAAAAAAAAGGACAATT+TGG + chr7_3:23944513-23944532 None:intergenic 25.0%
! TATCAGGAAAGGAAAAAAAA+AGG + chr7_3:23944522-23944541 None:intergenic 25.0%
! ATAAAGAACAATATCAGGAA+AGG + chr7_3:23944533-23944552 None:intergenic 25.0%
! TCCAAGAAATATATTGTACT+AGG - chr7_3:23945072-23945091 Msa1097820:intron 25.0%
! ACCTAGTACAATATATTTCT+TGG + chr7_3:23945076-23945095 None:intergenic 25.0%
! ATATATTGTACTAGGTTACA+AGG - chr7_3:23945080-23945099 Msa1097820:intron 25.0%
! TACTTCAATTGTAAGATTCA+AGG + chr7_3:23945210-23945229 None:intergenic 25.0%
! TGAATCTTACAATTGAAGTA+TGG - chr7_3:23945210-23945229 Msa1097820:intron 25.0%
ACCCAATTTCATTCTTCAAT+TGG - chr7_3:23939157-23939176 Msa1097820:three_prime_UTR 30.0%
GAATTGAAATACGCAATTGA+AGG + chr7_3:23939196-23939215 None:intergenic 30.0%
GTTGATCACGTTAAAAAGTA+TGG - chr7_3:23939554-23939573 Msa1097820:three_prime_UTR 30.0%
!!! TTTTTTTAGCACTGTAGCAT+TGG - chr7_3:23939662-23939681 Msa1097820:CDS 30.0%
! AACTTCAACTATTGTTGTTC+CGG + chr7_3:23940022-23940041 None:intergenic 30.0%
!! CAAAGTGTTGAAGATAATAC+CGG - chr7_3:23940067-23940086 Msa1097820:intron 30.0%
!! AGATAATGGAGAAGTTATTG+TGG - chr7_3:23940114-23940133 Msa1097820:intron 30.0%
ATGAATTTGGAAACTTTGGA+AGG - chr7_3:23940196-23940215 Msa1097820:intron 30.0%
TGATGAAGAAAACATCGATA+TGG - chr7_3:23940240-23940259 Msa1097820:intron 30.0%
!! CGATATGGATTGTGTTTTAA+AGG - chr7_3:23940255-23940274 Msa1097820:intron 30.0%
!! TGAGTTTGATTTGTTATGTG+GGG - chr7_3:23940282-23940301 Msa1097820:intron 30.0%
!! TAGAGATTTGGGTTTGTTTT+TGG - chr7_3:23940321-23940340 Msa1097820:intron 30.0%
CAACAACTAAATGAAAAGAC+AGG + chr7_3:23940599-23940618 None:intergenic 30.0%
! CTGTCTTTTCATTTAGTTGT+TGG - chr7_3:23940597-23940616 Msa1097820:intron 30.0%
! AAACGCCTATTTTGCATTAA+TGG - chr7_3:23940697-23940716 Msa1097820:intron 30.0%
GAGTTCCATTAATGCAAAAT+AGG + chr7_3:23940705-23940724 None:intergenic 30.0%
TATGAAGTCACACATATGAT+TGG + chr7_3:23940888-23940907 None:intergenic 30.0%
AGTTAGAACATTAACATTGC+TGG + chr7_3:23940937-23940956 None:intergenic 30.0%
! TTGGATTTTCAATGACAACA+GGG - chr7_3:23941061-23941080 Msa1097820:intron 30.0%
! AGCAACATAGAAACATTTTG+AGG - chr7_3:23941163-23941182 Msa1097820:intron 30.0%
TTGAAGAAAAGCTAAATCTG+AGG - chr7_3:23941250-23941269 Msa1097820:CDS 30.0%
! TTAACTCGTCTTCTAAAGAA+AGG + chr7_3:23941278-23941297 None:intergenic 30.0%
CTTTCTCAGTTCAATTTGAT+TGG - chr7_3:23941405-23941424 Msa1097820:intron 30.0%
ATACTGTTGCTGATATTCAT+CGG + chr7_3:23941622-23941641 None:intergenic 30.0%
AACTAATGAAGAACTCAACA+AGG - chr7_3:23941761-23941780 Msa1097820:intron 30.0%
GTGTTACACAATTGAAGATA+TGG - chr7_3:23941920-23941939 Msa1097820:intron 30.0%
AGATATGGAACATGTGATAA+AGG - chr7_3:23941935-23941954 Msa1097820:intron 30.0%
GATAAAGGATCTTAAGTCAA+AGG - chr7_3:23941950-23941969 Msa1097820:intron 30.0%
!! ATCTAATGCTGATTTAAACG+AGG - chr7_3:23942031-23942050 Msa1097820:intron 30.0%
ATGACAACTGCAAAGAATAT+TGG - chr7_3:23942122-23942141 Msa1097820:intron 30.0%
GAAACAAGATTTCAAAAGCT+TGG + chr7_3:23942225-23942244 None:intergenic 30.0%
! TGATAATTTGTGTCAACAAG+AGG - chr7_3:23942371-23942390 Msa1097820:CDS 30.0%
! GATAATTTGTGTCAACAAGA+GGG - chr7_3:23942372-23942391 Msa1097820:CDS 30.0%
! ATAATTTGTGTCAACAAGAG+GGG - chr7_3:23942373-23942392 Msa1097820:CDS 30.0%
! AGTTGATTCTAAAAAAGTGC+TGG + chr7_3:23942491-23942510 None:intergenic 30.0%
AAAAAGACTAACAAGCTCAT+AGG + chr7_3:23942629-23942648 None:intergenic 30.0%
TAAACAACTTTCAAAATGCC+AGG - chr7_3:23942715-23942734 Msa1097820:CDS 30.0%
!! CTGTTATAGGTCCATTTTTA+AGG + chr7_3:23942745-23942764 None:intergenic 30.0%
CTTAAAAATGGACCTATAAC+AGG - chr7_3:23942743-23942762 Msa1097820:CDS 30.0%
TGAAAGTGGAAAAATCAAAG+AGG + chr7_3:23942910-23942929 None:intergenic 30.0%
AACTACAGTTGTTAAACTCA+AGG + chr7_3:23942934-23942953 None:intergenic 30.0%
CAACTTGATTGAAGATTCAT+TGG - chr7_3:23943003-23943022 Msa1097820:CDS 30.0%
TTTATATACCTGTTCATCCT+TGG - chr7_3:23943129-23943148 Msa1097820:CDS 30.0%
AAGGACAAAAATTTCAACCA+AGG + chr7_3:23943149-23943168 None:intergenic 30.0%
ACTGAAGCAAACATATAAGA+AGG - chr7_3:23943219-23943238 Msa1097820:CDS 30.0%
CTGAAGCAAACATATAAGAA+GGG - chr7_3:23943220-23943239 Msa1097820:CDS 30.0%
ATGAACTAGTGGGAAAAAAA+AGG + chr7_3:23943497-23943516 None:intergenic 30.0%
!!! TTTTTTTTCCCACTAGTTCA+TGG - chr7_3:23943496-23943515 Msa1097820:intron 30.0%
!!! TTTTGGTTCTCTCTAACTAT+TGG - chr7_3:23943608-23943627 Msa1097820:intron 30.0%
AACAGAAATATACTGCCAAT+AGG + chr7_3:23943701-23943720 None:intergenic 30.0%
!! CTGGTAAAGTGTTATTTGTT+AGG - chr7_3:23943866-23943885 Msa1097820:intron 30.0%
!! TGCACATATTATTTCTAACC+AGG + chr7_3:23943944-23943963 None:intergenic 30.0%
GTAATTATGCAGTCCAAAAT+CGG + chr7_3:23944020-23944039 None:intergenic 30.0%
! GGACTGCATAATTACTATTT+TGG - chr7_3:23944025-23944044 Msa1097820:CDS 30.0%
ATAATACACTTCAATGATGC+TGG - chr7_3:23944202-23944221 Msa1097820:CDS 30.0%
ACAATTAAAACGAGAAGAGT+CGG - chr7_3:23944228-23944247 Msa1097820:CDS 30.0%
TCGGCAATAAATCTCATAAA+AGG - chr7_3:23944247-23944266 Msa1097820:CDS 30.0%
CGGCAATAAATCTCATAAAA+GGG - chr7_3:23944248-23944267 Msa1097820:CDS 30.0%
GTAATAACAGCAGAGAAATA+TGG - chr7_3:23944638-23944657 Msa1097820:intron 30.0%
!!! ACCTTTCTCTATTTTTGGAA+AGG - chr7_3:23944908-23944927 Msa1097820:intron 30.0%
ACAATATATTTCTTGGACCT+GGG + chr7_3:23945069-23945088 None:intergenic 30.0%
TACAATATATTTCTTGGACC+TGG + chr7_3:23945070-23945089 None:intergenic 30.0%
TTCAAAAGATAGATGGTACT+AGG - chr7_3:23945258-23945277 Msa1097820:intron 30.0%
AACACATCTTTGATCAGAAG+TGG + chr7_3:23939385-23939404 None:intergenic 35.0%
CTTCTGATCAAAGATGTGTT+TGG - chr7_3:23939385-23939404 Msa1097820:three_prime_UTR 35.0%
! ACTTTTGAACGTGATTAACC+AGG + chr7_3:23939769-23939788 None:intergenic 35.0%
GTTAATCACGTTCAAAAGTG+TGG - chr7_3:23939770-23939789 Msa1097820:intron 35.0%
GATCGTGAAACAAAAAGTCA+TGG + chr7_3:23939867-23939886 None:intergenic 35.0%
ATCACAGGTGTATGAAAAAC+TGG - chr7_3:23939947-23939966 Msa1097820:intron 35.0%
GTGTATGAAAAACTGGTTGT+TGG - chr7_3:23939954-23939973 Msa1097820:intron 35.0%
!!! TGTGGATTTTGAAATGAGTG+TGG - chr7_3:23940132-23940151 Msa1097820:intron 35.0%
! AACTTTGGAAGGTGAATTAG+AGG - chr7_3:23940207-23940226 Msa1097820:intron 35.0%
! ACTTTGGAAGGTGAATTAGA+GGG - chr7_3:23940208-23940227 Msa1097820:intron 35.0%
GAGATTCTTCTTTGAACGAT+TGG - chr7_3:23940380-23940399 Msa1097820:intron 35.0%
CATATGTGTGACTTCATAAG+TGG - chr7_3:23940890-23940909 Msa1097820:intron 35.0%
!!! TGCTGTCCTTTTTTATGTGT+TGG - chr7_3:23941042-23941061 Msa1097820:intron 35.0%
! GTTGGATTTTCAATGACAAC+AGG - chr7_3:23941060-23941079 Msa1097820:intron 35.0%
AGACGAGTTAATTCAAACAG+AGG - chr7_3:23941287-23941306 Msa1097820:intron 35.0%
AGTTTGGGAAAGATTGTTTG+AGG - chr7_3:23941323-23941342 Msa1097820:intron 35.0%
! CTTCATTTGAAATTCCCTTC+AGG + chr7_3:23941368-23941387 None:intergenic 35.0%
GGGAATTTCAAATGAAGTGT+TGG - chr7_3:23941371-23941390 Msa1097820:intron 35.0%
ACAGCTGAAGCAGTTAATTT+AGG - chr7_3:23941525-23941544 Msa1097820:intron 35.0%
!! CTGACTCTTTTAAAAGACTG+TGG - chr7_3:23941786-23941805 Msa1097820:intron 35.0%
AGAGTGTAGAGTTACTTGAA+AGG - chr7_3:23941820-23941839 Msa1097820:intron 35.0%
AAGTTTCTTGAGGAGTAGAT+TGG - chr7_3:23942058-23942077 Msa1097820:intron 35.0%
!! TAAAAGTTTGCTGACACAGT+TGG - chr7_3:23942163-23942182 Msa1097820:intron 35.0%
TCTATGGCAGTATAATGTAG+TGG + chr7_3:23942251-23942270 None:intergenic 35.0%
GAGATATTATCAGGTCTCTA+TGG + chr7_3:23942267-23942286 None:intergenic 35.0%
! TAAAAAGCATAGTCTGGCTT+GGG + chr7_3:23942442-23942461 None:intergenic 35.0%
! ATAAAAAGCATAGTCTGGCT+TGG + chr7_3:23942443-23942462 None:intergenic 35.0%
ATGGACCTATAACAGGTAAT+AGG - chr7_3:23942750-23942769 Msa1097820:CDS 35.0%
CTGAAATATATAGGTGAGGT+GGG + chr7_3:23942848-23942867 None:intergenic 35.0%
ACTGAAATATATAGGTGAGG+TGG + chr7_3:23942849-23942868 None:intergenic 35.0%
ATTGGATGAACATTTAGCAG+TGG - chr7_3:23943021-23943040 Msa1097820:CDS 35.0%
AATTTCAACCAAGGATGAAC+AGG + chr7_3:23943140-23943159 None:intergenic 35.0%
CTGATACACAAGAATCTCTT+TGG - chr7_3:23943332-23943351 Msa1097820:CDS 35.0%
!! CTATTGTATGGCTTTGGATA+TGG - chr7_3:23943413-23943432 Msa1097820:intron 35.0%
AAACAATTTGAACACGCTAG+TGG + chr7_3:23943576-23943595 None:intergenic 35.0%
GTTAAGGAGGATTGATAAGA+AGG + chr7_3:23943639-23943658 None:intergenic 35.0%
TATACTGCCAATAGGATGTT+TGG + chr7_3:23943693-23943712 None:intergenic 35.0%
!!! TAAATTGTTGGCTCCGATTT+TGG - chr7_3:23944004-23944023 Msa1097820:CDS 35.0%
GTAAACACAATTACTTCCTC+CGG - chr7_3:23944081-23944100 Msa1097820:CDS 35.0%
! TTTTTGCTTACAATCGAGAC+CGG + chr7_3:23944103-23944122 None:intergenic 35.0%
ACCATAATACTTACTCCCTT+CGG + chr7_3:23944386-23944405 None:intergenic 35.0%
!! TGCTCCTATTTTTCTTTTCC+AGG - chr7_3:23944680-23944699 Msa1097820:intron 35.0%
!! GCTCCTATTTTTCTTTTCCA+GGG - chr7_3:23944681-23944700 Msa1097820:intron 35.0%
!! CTCCTATTTTTCTTTTCCAG+GGG - chr7_3:23944682-23944701 Msa1097820:intron 35.0%
TTCCCCTGGAAAAGAAAAAT+AGG + chr7_3:23944687-23944706 None:intergenic 35.0%
TCAGATTCAATACCAGATGT+TGG - chr7_3:23944750-23944769 Msa1097820:intron 35.0%
CAGATTCAATACCAGATGTT+GGG - chr7_3:23944751-23944770 Msa1097820:intron 35.0%
TGTGACCTTTCTGTATTTCA+AGG - chr7_3:23944851-23944870 Msa1097820:intron 35.0%
CAAGTCCTTGAAATACAGAA+AGG + chr7_3:23944859-23944878 None:intergenic 35.0%
! GATCGACCTTTCTCTATTTT+TGG - chr7_3:23944903-23944922 Msa1097820:intron 35.0%
GCCTTTCCAAAAATAGAGAA+AGG + chr7_3:23944912-23944931 None:intergenic 35.0%
!!! CAACGAATCGTCGTTTTTAA+GGG + chr7_3:23945005-23945024 None:intergenic 35.0%
!!! TCAACGAATCGTCGTTTTTA+AGG + chr7_3:23945006-23945025 None:intergenic 35.0%
! ATGGCACGTATTTTCTTTTG+CGG - chr7_3:23945160-23945179 Msa1097820:intron 35.0%
! CAAGGAATCGTGGTTTTTAA+GGG + chr7_3:23945192-23945211 None:intergenic 35.0%
! TCAAGGAATCGTGGTTTTTA+AGG + chr7_3:23945193-23945212 None:intergenic 35.0%
TTGTAAGATTCAAGGAATCG+TGG + chr7_3:23945202-23945221 None:intergenic 35.0%
TCTTGGGTTCAAAAGATAGA+TGG - chr7_3:23945251-23945270 Msa1097820:intron 35.0%
ATAGATGGTACTAGGTTACA+AGG - chr7_3:23945266-23945285 Msa1097820:intron 35.0%
TACAAGGACAATGACATTGT+AGG - chr7_3:23945282-23945301 Msa1097820:intron 35.0%
!!! TGGGTTGATTTTAGATCGGT+TGG + chr7_3:23939142-23939161 None:intergenic 40.0%
ACATCTTTGATCAGAAGTGG+CGG + chr7_3:23939382-23939401 None:intergenic 40.0%
ACTAACACAGATACGAACAC+CGG + chr7_3:23939484-23939503 None:intergenic 40.0%
!!! ACACCCACTTTTTGTAAACC+TGG - chr7_3:23939737-23939756 Msa1097820:CDS 40.0%
!!! CACCCACTTTTTGTAAACCT+GGG - chr7_3:23939738-23939757 Msa1097820:CDS 40.0%
TCAATTCGCGGCTAAAATTG+TGG - chr7_3:23939819-23939838 Msa1097820:intron 40.0%
CTTGATTAACCAGGTATCAC+AGG - chr7_3:23939932-23939951 Msa1097820:intron 40.0%
TTTCATACACCTGTGATACC+TGG + chr7_3:23939944-23939963 None:intergenic 40.0%
! TTGAGTTTTCTTCCAGGTTC+CGG - chr7_3:23940000-23940019 Msa1097820:intron 40.0%
AATACCGGTGATGTTGATGT+TGG - chr7_3:23940082-23940101 Msa1097820:intron 40.0%
!! GTTGGAGGTGTTTCAGATAA+TGG - chr7_3:23940100-23940119 Msa1097820:intron 40.0%
!! GGTTCTGAGGTTAGAGATTT+GGG - chr7_3:23940310-23940329 Msa1097820:intron 40.0%
ACACTTCATGCTGAGATTTC+TGG - chr7_3:23940346-23940365 Msa1097820:intron 40.0%
AATCTCGTAAAACTGCTCCT+CGG + chr7_3:23940425-23940444 None:intergenic 40.0%
!! TTGGAAAAGGGTATCGTATG+TGG - chr7_3:23940616-23940635 Msa1097820:intron 40.0%
!! TGGAAAAGGGTATCGTATGT+GGG - chr7_3:23940617-23940636 Msa1097820:intron 40.0%
! AGAGTCTAGATTTTTCGCAC+TGG + chr7_3:23940852-23940871 None:intergenic 40.0%
ACAACAGGGAATGTTGAAGA+CGG - chr7_3:23941075-23941094 Msa1097820:intron 40.0%
TCGAAGTTTGATCATCCTCT+TGG + chr7_3:23941110-23941129 None:intergenic 40.0%
GAGGATGCTTGAGAAATCTT+TGG - chr7_3:23941182-23941201 Msa1097820:intron 40.0%
AGGAAGAAGCAATCGAAGTT+TGG - chr7_3:23941307-23941326 Msa1097820:intron 40.0%
GGAAGAAGCAATCGAAGTTT+GGG - chr7_3:23941308-23941327 Msa1097820:intron 40.0%
TTCCAGCTTATCTCTAAGCT+CGG + chr7_3:23941448-23941467 None:intergenic 40.0%
ACAAGAAACTGAATGCCAGT+TGG - chr7_3:23941578-23941597 Msa1097820:intron 40.0%
AGACTTTCACATTCACCAAC+TGG + chr7_3:23941596-23941615 None:intergenic 40.0%
GTGTTCTCAAGTTAGAGACA+TGG - chr7_3:23941650-23941669 Msa1097820:intron 40.0%
AGAAAATCGAGCTAATGCTG+CGG - chr7_3:23941713-23941732 Msa1097820:intron 40.0%
GTTACTTGAAAGGCAGCTAA+AGG - chr7_3:23941830-23941849 Msa1097820:intron 40.0%
ACGAGGAAGTAAGTTTCTTG+AGG - chr7_3:23942048-23942067 Msa1097820:intron 40.0%
AGTAGATTGGAATGCTTGGA+GGG - chr7_3:23942071-23942090 Msa1097820:intron 40.0%
!! GAGAGAGCGTCTTAATAAGA+AGG - chr7_3:23942193-23942212 Msa1097820:intron 40.0%
ATGCAGATCAATTGATACCC+TGG + chr7_3:23942347-23942366 None:intergenic 40.0%
! AGGGTATCAATTGATCTGCA+TGG - chr7_3:23942346-23942365 Msa1097820:CDS 40.0%
ACAACTTTCAAAATGCCAGG+CGG - chr7_3:23942718-23942737 Msa1097820:CDS 40.0%
TCTGGCCTATTACCTGTTAT+AGG + chr7_3:23942758-23942777 None:intergenic 40.0%
! GAGAATGTTAGTCTCGAATC+TGG + chr7_3:23942776-23942795 None:intergenic 40.0%
TTCTCAAAGTAGTCATGCTC+AGG - chr7_3:23942791-23942810 Msa1097820:CDS 40.0%
TATATAGGTGAGGTGGGAAT+CGG + chr7_3:23942842-23942861 None:intergenic 40.0%
GTTAAACTCAAGGCTGAAAG+TGG + chr7_3:23942924-23942943 None:intergenic 40.0%
!! ACATTTAGCAGTGGTTTGCT+TGG - chr7_3:23943030-23943049 Msa1097820:CDS 40.0%
! AAGTTTGTTCTCGCTTGCTA+AGG + chr7_3:23943188-23943207 None:intergenic 40.0%
! AGCAAGCGAGAACAAACTTT+TGG - chr7_3:23943189-23943208 Msa1097820:CDS 40.0%
GACTTTGTCTTCTGAGTATG+AGG - chr7_3:23943264-23943283 Msa1097820:CDS 40.0%
! GCTTTGGATATGGTTTCTGT+TGG - chr7_3:23943423-23943442 Msa1097820:intron 40.0%
!!! AACTTCTGCCTGTTTTTGTC+TGG - chr7_3:23943449-23943468 Msa1097820:intron 40.0%
AGCTACTACCAGACAAAAAC+AGG + chr7_3:23943460-23943479 None:intergenic 40.0%
TTTCCCACTAGTTCATGGAT+TGG - chr7_3:23943501-23943520 Msa1097820:intron 40.0%
TCACCAATCCATGAACTAGT+GGG + chr7_3:23943507-23943526 None:intergenic 40.0%
ATCACCAATCCATGAACTAG+TGG + chr7_3:23943508-23943527 None:intergenic 40.0%
ATAGGATGTTTGGACATGAG+TGG + chr7_3:23943683-23943702 None:intergenic 40.0%
CTCATGTCCAAACATCCTAT+TGG - chr7_3:23943683-23943702 Msa1097820:intron 40.0%
AACATTCATGGCATGCTTCT+AGG - chr7_3:23943731-23943750 Msa1097820:intron 40.0%
! TCTTTTTATGGGAGTCTTGC+TGG - chr7_3:23943777-23943796 Msa1097820:intron 40.0%
!! CGTATCAACTTTTTCTTCGC+TGG - chr7_3:23943847-23943866 Msa1097820:intron 40.0%
TGTGCATAAAGCATGCTATG+TGG - chr7_3:23943958-23943977 Msa1097820:intron 40.0%
AATACTTACTCCCTTCGGTT+CGG + chr7_3:23944381-23944400 None:intergenic 40.0%
ACCGAAGGGAGTAAGTATTA+TGG - chr7_3:23944382-23944401 Msa1097820:CDS 40.0%
ACTCTCCTATGATTCAGTTC+AGG + chr7_3:23944426-23944445 None:intergenic 40.0%
AAAGGCAAGAGACTACTGTT+GGG - chr7_3:23944926-23944945 Msa1097820:intron 40.0%
GGGAAATGACATCATACGAA+AGG - chr7_3:23944972-23944991 Msa1097820:intron 40.0%
GAATCCTTACAAGTGCAGTA+TGG - chr7_3:23945024-23945043 Msa1097820:intron 40.0%
ATCACCATACTGCACTTGTA+AGG + chr7_3:23945031-23945050 None:intergenic 40.0%
TGTACTAGGTTACAAGGACA+CGG - chr7_3:23945086-23945105 Msa1097820:intron 40.0%
CGCCCAGGTTTACAAAAAGT+GGG + chr7_3:23939743-23939762 None:intergenic 45.0%
TCGCCCAGGTTTACAAAAAG+TGG + chr7_3:23939744-23939763 None:intergenic 45.0%
! ACTATTGTTGTTCCGGAACC+TGG + chr7_3:23940015-23940034 None:intergenic 45.0%
ACCTCCAACATCAACATCAC+CGG + chr7_3:23940089-23940108 None:intergenic 45.0%
!! TGATTTGTTATGTGGGGTGC+TGG - chr7_3:23940288-23940307 Msa1097820:intron 45.0%
!! GATTTGTTATGTGGGGTGCT+GGG - chr7_3:23940289-23940308 Msa1097820:intron 45.0%
!! GGGTTCTGAGGTTAGAGATT+TGG - chr7_3:23940309-23940328 Msa1097820:intron 45.0%
CTTTGAACGATTGGCAAGAG+AGG - chr7_3:23940389-23940408 Msa1097820:intron 45.0%
!! GGAAAAGGGTATCGTATGTG+GGG - chr7_3:23940618-23940637 Msa1097820:intron 45.0%
ATCCGAGCTTAGAGATAAGC+TGG - chr7_3:23941443-23941462 Msa1097820:intron 45.0%
GAGGAGTAGATTGGAATGCT+TGG - chr7_3:23942067-23942086 Msa1097820:intron 45.0%
GAGTAGATTGGAATGCTTGG+AGG - chr7_3:23942070-23942089 Msa1097820:intron 45.0%
! TTTGCTGACACAGTTGGCTT+TGG - chr7_3:23942169-23942188 Msa1097820:intron 45.0%
TGTGTCAACAAGAGGGGAAT+AGG - chr7_3:23942379-23942398 Msa1097820:CDS 45.0%
AGGGGAATAGGAAGATTGTC+AGG - chr7_3:23942391-23942410 Msa1097820:CDS 45.0%
!! TGGTTTGCTTGGCTGATGAT+GGG - chr7_3:23943041-23943060 Msa1097820:CDS 45.0%
!! TTGGCTGATGATGGGATGTA+TGG - chr7_3:23943049-23943068 Msa1097820:CDS 45.0%
AGGAGGATAGCTGCAAGTAA+AGG + chr7_3:23943168-23943187 None:intergenic 45.0%
! TTTGTTCTCGCTTGCTAAGG+AGG + chr7_3:23943185-23943204 None:intergenic 45.0%
GCTATGCTGCTGCTATTGTA+TGG - chr7_3:23943401-23943420 Msa1097820:intron 45.0%
CTGCTGCTATTGTATGGCTT+TGG - chr7_3:23943407-23943426 Msa1097820:intron 45.0%
AGTACTTGGCATAGAGTGCA+TGG - chr7_3:23943915-23943934 Msa1097820:intron 45.0%
ACTATCTGTCCGCATTGTAC+AGG + chr7_3:23944063-23944082 None:intergenic 45.0%
TATAACAGAGACCGAACCGA+AGG - chr7_3:23944367-23944386 Msa1097820:CDS 45.0%
ATAACAGAGACCGAACCGAA+GGG - chr7_3:23944368-23944387 Msa1097820:CDS 45.0%
TGGCACCTGAACTGAATCAT+AGG - chr7_3:23944418-23944437 Msa1097820:exon 45.0%
!! TTTTCGATGTCTTGTTCCCC+TGG + chr7_3:23944701-23944720 None:intergenic 45.0%
ACTGTGAGGAGAATTGATGC+AGG - chr7_3:23944774-23944793 Msa1097820:intron 45.0%
ACAGAAAGGTCACAGCTGAA+AGG + chr7_3:23944845-23944864 None:intergenic 45.0%
GAGAAAGGTCGATCTCTTCA+TGG + chr7_3:23944897-23944916 None:intergenic 45.0%
GAAAGGCAAGAGACTACTGT+TGG - chr7_3:23944925-23944944 Msa1097820:intron 45.0%
ACTACTGTTGGGATCTAAGC+TGG - chr7_3:23944937-23944956 Msa1097820:intron 45.0%
CTACTGTTGGGATCTAAGCT+GGG - chr7_3:23944938-23944957 Msa1097820:intron 45.0%
!! TACAAAAAAAAAAATATTAA+TGG + chr7_3:23939233-23939252 None:intergenic 5.0%
!!! TATTTTTTAAAATTTTTATC+GGG - chr7_3:23939444-23939463 Msa1097820:three_prime_UTR 5.0%
!!! TTAAATATTTTTCTTTTTAT+GGG - chr7_3:23943766-23943785 Msa1097820:intron 5.0%
ATCAGAAGTGGCGGTAGTGT+CGG + chr7_3:23939373-23939392 None:intergenic 50.0%
!! CACTGTAGCATTGGTGTGTC+CGG - chr7_3:23939671-23939690 Msa1097820:CDS 50.0%
ACCGGTGATGTTGATGTTGG+AGG - chr7_3:23940085-23940104 Msa1097820:intron 50.0%
GAACGATTGGCAAGAGAGGT+TGG - chr7_3:23940393-23940412 Msa1097820:intron 50.0%
! AGAGAGGTTGGTTGAATCCG+AGG - chr7_3:23940405-23940424 Msa1097820:intron 50.0%
ACAGGGAATGTTGAAGACGG+TGG - chr7_3:23941078-23941097 Msa1097820:intron 50.0%
AGACGGTGGAAATGTCCAAG+AGG - chr7_3:23941092-23941111 Msa1097820:intron 50.0%
AATGCGCGTGAGATCCTGAA+GGG - chr7_3:23941351-23941370 Msa1097820:intron 50.0%
! GACTGATTTACAGCTGCAGC+AGG - chr7_3:23941854-23941873 Msa1097820:intron 50.0%
TGCACTGTCAGCTAGACTCT+CGG + chr7_3:23941985-23942004 None:intergenic 50.0%
GGAAGATTGTCAGGAGCCTA+TGG - chr7_3:23942400-23942419 Msa1097820:CDS 50.0%
TTGTCAGGAGCCTATGGTCT+AGG - chr7_3:23942406-23942425 Msa1097820:CDS 50.0%
CACTCAAGTGGTCAGTAGTG+TGG + chr7_3:23942659-23942678 None:intergenic 50.0%
CACACTACTGACCACTTGAG+TGG - chr7_3:23942657-23942676 Msa1097820:CDS 50.0%
ACTGACCACTTGAGTGGTGT+AGG - chr7_3:23942663-23942682 Msa1097820:CDS 50.0%
GAAAGCCTACACCACTCAAG+TGG + chr7_3:23942671-23942690 None:intergenic 50.0%
TGCCAGGCGGTCCTTAAAAA+TGG - chr7_3:23942731-23942750 Msa1097820:CDS 50.0%
!! GTCCATTTTTAAGGACCGCC+TGG + chr7_3:23942736-23942755 None:intergenic 50.0%
AGTCATGCTCAGGTCTTGCA+AGG - chr7_3:23942801-23942820 Msa1097820:CDS 50.0%
!! GTGGTTTGCTTGGCTGATGA+TGG - chr7_3:23943040-23943059 Msa1097820:CDS 50.0%
!! GCTGATGATGGGATGTATGG+AGG - chr7_3:23943052-23943071 Msa1097820:CDS 50.0%
GCATAGAGTGCATGGTTTCC+TGG - chr7_3:23943923-23943942 Msa1097820:intron 50.0%
TTGCTTACAATCGAGACCGG+AGG + chr7_3:23944100-23944119 None:intergenic 50.0%
! CAGTGTCGAGTAGTGCTCTA+TGG + chr7_3:23944455-23944474 None:intergenic 50.0%
TACCAGATGTTGGGACTGTG+AGG - chr7_3:23944760-23944779 Msa1097820:intron 50.0%
TAAGCTGGGACTTGCGGATT+GGG - chr7_3:23944952-23944971 Msa1097820:intron 50.0%
! GTATGGTGATGCAGCTGTAG+AGG - chr7_3:23945041-23945060 Msa1097820:intron 50.0%
!! TCGGGATCGGTGTTAGTGTC+CGG - chr7_3:23939462-23939481 Msa1097820:three_prime_UTR 55.0%
GTCGTGTTCGTGTCAGACAC+CGG + chr7_3:23939693-23939712 None:intergenic 55.0%
TTGTAAACCTGGGCGACACC+TGG - chr7_3:23939748-23939767 Msa1097820:CDS 55.0%
! TGATTAACCAGGTGTCGCCC+AGG + chr7_3:23939758-23939777 None:intergenic 55.0%
CAATGCGCGTGAGATCCTGA+AGG - chr7_3:23941350-23941369 Msa1097820:intron 55.0%
GAGTCTAGCTGACAGTGCAG+AGG - chr7_3:23941986-23942005 Msa1097820:intron 55.0%
GGAGGGATCACTGCAGAAAG+CGG - chr7_3:23942088-23942107 Msa1097820:intron 55.0%
CCTGACGTTGCCTAGACCAT+AGG + chr7_3:23942419-23942438 None:intergenic 55.0%
CCTATGGTCTAGGCAACGTC+AGG - chr7_3:23942416-23942435 Msa1097820:CDS 55.0%
GGAATCGGTAGGCTAGGCTT+GGG + chr7_3:23942827-23942846 None:intergenic 55.0%
TAGGTGAGGTGGGAATCGGT+AGG + chr7_3:23942838-23942857 None:intergenic 55.0%
CCGCATTGTACAGGTGAGGA+GGG + chr7_3:23944054-23944073 None:intergenic 55.0%
CCCTCCTCACCTGTACAATG+CGG - chr7_3:23944051-23944070 Msa1097820:CDS 55.0%
TCCGCATTGTACAGGTGAGG+AGG + chr7_3:23944055-23944074 None:intergenic 55.0%
CTGTCCGCATTGTACAGGTG+AGG + chr7_3:23944058-23944077 None:intergenic 55.0%
CTCCTCACAGTCCCAACATC+TGG + chr7_3:23944765-23944784 None:intergenic 55.0%
GGGATCTAAGCTGGGACTTG+CGG - chr7_3:23944946-23944965 Msa1097820:intron 55.0%
CTAAGCTGGGACTTGCGGAT+TGG - chr7_3:23944951-23944970 Msa1097820:intron 55.0%
ATGCAGCTGTAGAGGATCCC+AGG - chr7_3:23945049-23945068 Msa1097820:intron 55.0%
!! GAAGTATGGTGCTGCAGCTC+TGG - chr7_3:23945224-23945243 Msa1097820:intron 55.0%
!! CTGCAGCTCTGGAGGATCTT+GGG - chr7_3:23945235-23945254 Msa1097820:intron 55.0%
ACACTCACTCGCGCGACACA+TGG - chr7_3:23939532-23939551 Msa1097820:three_prime_UTR 60.0%
!! ATGTGGGGTGCTGGGTTCTG+AGG - chr7_3:23940297-23940316 Msa1097820:intron 60.0%
GGGATCACTGCAGAAAGCGG+AGG - chr7_3:23942091-23942110 Msa1097820:intron 60.0%
GGGAATCGGTAGGCTAGGCT+TGG + chr7_3:23942828-23942847 None:intergenic 60.0%
GAGGTGGGAATCGGTAGGCT+AGG + chr7_3:23942833-23942852 None:intergenic 60.0%
!! GTATGGTGCTGCAGCTCTGG+AGG - chr7_3:23945227-23945246 Msa1097820:intron 60.0%
!! GCTGCAGCTCTGGAGGATCT+TGG - chr7_3:23945234-23945253 Msa1097820:intron 60.0%
CAGCAGGCAGTAGCGTCTGC+TGG - chr7_3:23941870-23941889 Msa1097820:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 23939117 23945365 23939117 ID=Msa1097820;Name=Msa1097820
chr7_3 mRNA 23939117 23945365 23939117 ID=Msa1097820-mRNA-1;Parent=Msa1097820;Name=Msa1097820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=104|1|1|1|0.75|0.6|5|466|627
chr7_3 exon 23939117 23939780 23939117 ID=Msa1097820-mRNA-1:exon:5183;Parent=Msa1097820-mRNA-1
chr7_3 exon 23941197 23941304 23941197 ID=Msa1097820-mRNA-1:exon:5182;Parent=Msa1097820-mRNA-1
chr7_3 exon 23942268 23943400 23942268 ID=Msa1097820-mRNA-1:exon:5181;Parent=Msa1097820-mRNA-1
chr7_3 exon 23943980 23944466 23943980 ID=Msa1097820-mRNA-1:exon:5180;Parent=Msa1097820-mRNA-1
chr7_3 exon 23945304 23945365 23945304 ID=Msa1097820-mRNA-1:exon:5179;Parent=Msa1097820-mRNA-1
chr7_3 five_prime_UTR 23945304 23945365 23945304 ID=Msa1097820-mRNA-1:five_prime_utr;Parent=Msa1097820-mRNA-1
chr7_3 five_prime_UTR 23944425 23944466 23944425 ID=Msa1097820-mRNA-1:five_prime_utr;Parent=Msa1097820-mRNA-1
chr7_3 CDS 23943980 23944424 23943980 ID=Msa1097820-mRNA-1:cds;Parent=Msa1097820-mRNA-1
chr7_3 CDS 23942268 23943400 23942268 ID=Msa1097820-mRNA-1:cds;Parent=Msa1097820-mRNA-1
chr7_3 CDS 23941197 23941304 23941197 ID=Msa1097820-mRNA-1:cds;Parent=Msa1097820-mRNA-1
chr7_3 CDS 23939583 23939780 23939583 ID=Msa1097820-mRNA-1:cds;Parent=Msa1097820-mRNA-1
chr7_3 three_prime_UTR 23939117 23939582 23939117 ID=Msa1097820-mRNA-1:three_prime_utr;Parent=Msa1097820-mRNA-1
Gene Sequence

>Msa1097820

ATGGAAACTCAAAGTGTTGAAGATAATACCGGTGATGTTGATGTTGGAGGTGTTTCAGATAATGGAGAAGTTATTGTGGATTTTGAAATGAGTGTGGTATATTTCTCTGAGAAAGTTTCAAATTTGAGTATTTTTATGATGAATTTGGAAACTTTGGAAGGTGAATTAGAGGGTTTAGTTTGTGATGAAGAAAACATCGATATGGATTGTGTTTTAAAGGGTTTTGAGTTTGATTTGTTATGTGGGGTGCTGGGTTCTGAGGTTAGAGATTTGGGTTTGTTTTTGGATACACTTCATGCTGAGATTTCTGGTTCTAGAGAGAGAGATTCTTCTTTGAACGATTGGCAAGAGAGGTTGGTTGAATCCGAGGAGCAGTTTTACGAGATTAAGAAACAATCTTTTAGTTTTGAAAGGACTTTGTCTTCTTATAAAAAGGAAGAGAATGGGAATGTTGAAGACGGTGGAAATGTCCAAGAGGATGATCAAACTTCGAATGTAAACAACATGATGAACATGCAAACGACTGAGCAACATAGAAACATTTTGAGGATGCTTGAGAAATCTTTGGCAAATGAAATAGATCTCGAGAAGAATTTCAACGACTCGAAGAAAATTGAAGAAAAGCTAAATCTGAGGATCCTTTCTTTAGAAGACGAGTTAATTCAAACAGAGGAAGAAGCAATCGAAGTTTGGGAAAGATTGTTTGAGGCAGACAATGCGCGTGAGATCCTGAAGGGAATTTCAAATGAAGTGTTGGCTAAACTCAAGCTTTCTCAGTTCAATTTGATTGGTTTAAGAAAAAGTGAATCCGAGCTTAGAGATAAGCTGGAAACTTCTATAGAGCAATTGAAAAATAGAGACGTTAATTTGGAAAAGATCGAAAGCAGCACAGCTGAAGCAGTTAATTTAGGCGACAAAGTGTGCTCACTTGAGAAGCAGCTACAAGAAACTGAATGCCAGTTGGTGAATGTGAAAGTCTCTGCCGATGAATATCAGCAACAGTATAATGTTGTGTGTTCTCAAGTTAGAGACATGGATAACCTTATCGTAGAATTGAAAGAAAATGCAAAAAATGCAGAAAATCGAGCTAATGCTGCGGAAGTTCAGTGTAAAAAATTGACGGAAACTAATGAAGAACTCAACAAGGAGCTGACTCTTTTAAAAGACTGTGGTATCACATCTGAGAGTGTAGAGTTACTTGAAAGGCAGCTAAAGGAGACTGATTTACAGCTGCAGCAGGCAGTAGCGTCTGCTGGAGCTAGTGAAGAGAAGCAAAAGATGTTGTGTTACACAATTGAAGATATGGAACATGTGATAAAGGATCTTAAGTCAAAGGTTTCTAAAGCCGAGAGTCTAGCTGACAGTGCAGAGGACAAGTGTATCATATTATCTGAATCTAATGCTGATTTAAACGAGGAAGTAAGTTTCTTGAGGAGTAGATTGGAATGCTTGGAGGGATCACTGCAGAAAGCGGAGGAAGCGAAAATGACAACTGCAAAGAATATTGGAAAGCAAACCAAAGTTTTTAAAAGTTTGCTGACACAGTTGGCTTTGGAGAGAGAGCGTCTTAATAAGAAGCTATCCTCCTTAGCAAGCGAGAACAAACTTTTGGCAGTGAAACTGAAGCAAACATATAAGAAGGGTTCTTCTAAAGAAGTTAGTGCGACTTTGTCTTCTGAGTATGAGGGGAACAAGACATCGAAAAACTCATCTGCAAATGATAATGAAGTAAAGTCAGATTCAATACCAGATGTTGGGACTGTGAGGAGAATTGATGCAGGAGTTCTCACTTTTAAGCACTTATTGATATCATTGTTTGTCTTACTCCTTTCAGCTGTGACCTTTCTGTATTTCAAGGACTTGAATGTTGATGTCAGTCCATGA

Protein sequence

>Msa1097820

METQSVEDNTGDVDVGGVSDNGEVIVDFEMSVVYFSEKVSNLSIFMMNLETLEGELEGLVCDEENIDMDCVLKGFEFDLLCGVLGSEVRDLGLFLDTLHAEISGSRERDSSLNDWQERLVESEEQFYEIKKQSFSFERTLSSYKKEENGNVEDGGNVQEDDQTSNVNNMMNMQTTEQHRNILRMLEKSLANEIDLEKNFNDSKKIEEKLNLRILSLEDELIQTEEEAIEVWERLFEADNAREILKGISNEVLAKLKLSQFNLIGLRKSESELRDKLETSIEQLKNRDVNLEKIESSTAEAVNLGDKVCSLEKQLQETECQLVNVKVSADEYQQQYNVVCSQVRDMDNLIVELKENAKNAENRANAAEVQCKKLTETNEELNKELTLLKDCGITSESVELLERQLKETDLQLQQAVASAGASEEKQKMLCYTIEDMEHVIKDLKSKVSKAESLADSAEDKCIILSESNADLNEEVSFLRSRLECLEGSLQKAEEAKMTTAKNIGKQTKVFKSLLTQLALERERLNKKLSSLASENKLLAVKLKQTYKKGSSKEVSATLSSEYEGNKTSKNSSANDNEVKSDSIPDVGTVRRIDAGVLTFKHLLISLFVLLLSAVTFLYFKDLNVDVSP*