Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873460 | AES76420.1 | 69.412 | 85 | 20 | 1 | 62 | 140 | 78 | 162 | 3.51e-30 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873460 | G7KKS4 | 69.412 | 85 | 20 | 1 | 62 | 140 | 78 | 162 | 1.68e-30 | 117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102070 | Msa0873460 | 0.831006 | 2.131077e-55 | -8.615850e-47 |
| Msa0726140 | Msa0873460 | 0.822658 | 2.106034e-53 | -8.615850e-47 |
| Msa0729800 | Msa0873460 | 0.801311 | 9.559552e-49 | -8.615850e-47 |
| Msa0733290 | Msa0873460 | 0.808956 | 2.400718e-50 | -8.615850e-47 |
| Msa0743810 | Msa0873460 | 0.837573 | 4.799862e-57 | -8.615850e-47 |
| Msa0745060 | Msa0873460 | 0.829045 | 6.409815e-55 | -8.615850e-47 |
| Msa0777870 | Msa0873460 | 0.812576 | 3.954351e-51 | -8.615850e-47 |
| Msa0783160 | Msa0873460 | 0.807349 | 5.278864e-50 | -8.615850e-47 |
| Msa0808010 | Msa0873460 | 0.806624 | 7.514337e-50 | -8.615850e-47 |
| Msa0808020 | Msa0873460 | 0.820988 | 5.128087e-53 | -8.615850e-47 |
| Msa0811270 | Msa0873460 | 0.802075 | 6.662547e-49 | -8.615850e-47 |
| Msa0825860 | Msa0873460 | 0.834780 | 2.459472e-56 | -8.615850e-47 |
| Msa0200000 | Msa0873460 | 0.804944 | 1.694076e-49 | -8.615850e-47 |
| Msa0227480 | Msa0873460 | 0.802974 | 4.348876e-49 | -8.615850e-47 |
| Msa0232850 | Msa0873460 | 0.819855 | 9.329439e-53 | -8.615850e-47 |
| Msa0365500 | Msa0873460 | 0.814182 | 1.755386e-51 | -8.615850e-47 |
| Msa0414410 | Msa0873460 | 0.812796 | 3.540473e-51 | -8.615850e-47 |
| Msa0414420 | Msa0873460 | 0.842130 | 3.120245e-58 | -8.615850e-47 |
| Msa0451730 | Msa0873460 | 0.810023 | 1.416730e-50 | -8.615850e-47 |
| Msa0452900 | Msa0873460 | 0.842246 | 2.907137e-58 | -8.615850e-47 |
| Msa0267000 | Msa0873460 | 0.823807 | 1.135345e-53 | -8.615850e-47 |
| Msa0267010 | Msa0873460 | 0.833873 | 4.153556e-56 | -8.615850e-47 |
| Msa0342240 | Msa0873460 | 0.820244 | 7.598326e-53 | -8.615850e-47 |
| Msa0360510 | Msa0873460 | 0.810458 | 1.141501e-50 | -8.615850e-47 |
| Msa0491590 | Msa0873460 | 0.804032 | 2.624837e-49 | -8.615850e-47 |
| Msa0564890 | Msa0873460 | 0.818283 | 2.125391e-52 | -8.615850e-47 |
| Msa0858980 | Msa0873460 | 0.807529 | 4.835506e-50 | -8.615850e-47 |
| Msa0865320 | Msa0873460 | 0.816033 | 6.812994e-52 | -8.615850e-47 |
| Msa0873460 | Msa0888370 | 0.820987 | 5.129945e-53 | -8.615850e-47 |
| Msa0873460 | Msa0898080 | 0.806113 | 9.628429e-50 | -8.615850e-47 |
| Msa0873460 | Msa0989060 | 0.829964 | 3.833852e-55 | -8.615850e-47 |
| Msa0873460 | Msa1016280 | 0.821327 | 4.282157e-53 | -8.615850e-47 |
| Msa0873460 | Msa1025360 | 0.837826 | 4.132170e-57 | -8.615850e-47 |
| Msa0873460 | Msa1025370 | 0.823133 | 1.631867e-53 | -8.615850e-47 |
| Msa0873460 | Msa1044830 | 0.825032 | 5.846038e-54 | -8.615850e-47 |
| Msa0873460 | Msa1044840 | 0.845590 | 3.693507e-59 | -8.615850e-47 |
| Msa0873460 | Msa1092990 | 0.821897 | 3.162347e-53 | -8.615850e-47 |
| Msa0873460 | Msa1100980 | 0.838111 | 3.491649e-57 | -8.615850e-47 |
| Msa0873460 | Msa1109440 | 0.813787 | 2.144305e-51 | -8.615850e-47 |
| Msa0873460 | Msa1135740 | 0.818583 | 1.816878e-52 | -8.615850e-47 |
| Msa0873460 | Msa1146110 | 0.817219 | 3.693767e-52 | -8.615850e-47 |
| Msa0873460 | Msa1187940 | 0.809199 | 2.128826e-50 | -8.615850e-47 |
| Msa0873460 | Msa1192640 | 0.819788 | 9.663204e-53 | -8.615850e-47 |
| Msa0873460 | Msa1246880 | 0.803368 | 3.604960e-49 | -8.615850e-47 |
| Msa0873460 | Msa1269670 | 0.824846 | 6.470825e-54 | -8.615850e-47 |
| Msa0873460 | Msa1270230 | 0.831513 | 1.599831e-55 | -8.615850e-47 |
| Msa0873460 | Msa1270240 | 0.821027 | 5.020987e-53 | -8.615850e-47 |
| Msa0873460 | Msa1270270 | 0.817985 | 2.482179e-52 | -8.615850e-47 |
| Msa0873460 | Msa1283330 | 0.835102 | 2.040458e-56 | -8.615850e-47 |
| Msa0873460 | Msa1285930 | 0.829496 | 4.982572e-55 | -8.615850e-47 |
| Msa0873460 | Msa1287800 | 0.827983 | 1.157239e-54 | -8.615850e-47 |
| Msa0873460 | Msa1287810 | 0.844511 | 7.225827e-59 | -8.615850e-47 |
| Msa0873460 | Msa1320300 | 0.809801 | 1.581287e-50 | -8.615850e-47 |
| Msa0873460 | Msa1340590 | 0.828959 | 6.724749e-55 | -8.615850e-47 |
| Msa0873460 | Msa1397580 | 0.831048 | 2.082018e-55 | -8.615850e-47 |
| Msa0873460 | Msa1404000 | 0.821019 | 5.042799e-53 | -8.615850e-47 |
| Msa0873460 | Msa1408780 | 0.804081 | 2.562888e-49 | -8.615850e-47 |
| Msa0873460 | Msa1415310 | 0.814143 | 1.789888e-51 | -8.615850e-47 |
| Msa0873460 | Msa1422180 | 0.818278 | 2.131016e-52 | -8.615850e-47 |
| Msa0873460 | Msa1433120 | 0.814598 | 1.420263e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0873460 | MtrunA17_Chr5g0443081 | 53.659 | 82 | 32 | 1 | 61 | 136 | 30 | 111 | 2.97e-25 | 92.8 |
| Msa0873460 | MtrunA17_Chr1g0174321 | 55.294 | 85 | 31 | 2 | 60 | 138 | 23 | 106 | 5.23e-25 | 92.0 |
| Msa0873460 | MtrunA17_Chr1g0174371 | 52.874 | 87 | 34 | 2 | 58 | 138 | 21 | 106 | 5.12e-24 | 89.7 |
| Msa0873460 | MtrunA17_Chr1g0174351 | 54.118 | 85 | 32 | 2 | 60 | 138 | 23 | 106 | 2.58e-23 | 87.8 |
| Msa0873460 | MtrunA17_Chr1g0174331 | 51.724 | 87 | 35 | 2 | 58 | 138 | 21 | 106 | 3.63e-23 | 87.8 |
| Msa0873460 | MtrunA17_Chr1g0174381 | 51.724 | 87 | 35 | 2 | 58 | 138 | 21 | 106 | 1.16e-22 | 86.3 |
| Msa0873460 | MtrunA17_Chr1g0174391 | 51.765 | 85 | 34 | 2 | 60 | 138 | 23 | 106 | 6.18e-22 | 84.3 |
| Msa0873460 | MtrunA17_Chr2g0291121 | 48.780 | 82 | 35 | 2 | 62 | 137 | 25 | 105 | 1.39e-19 | 78.2 |
| Msa0873460 | MtrunA17_Chr8g0339821 | 48.780 | 82 | 35 | 2 | 55 | 129 | 18 | 99 | 1.94e-18 | 75.5 |
| Msa0873460 | MtrunA17_Chr5g0443061 | 50.000 | 84 | 36 | 1 | 61 | 138 | 30 | 113 | 4.41e-18 | 74.7 |
| Msa0873460 | MtrunA17_Chr5g0443051 | 47.253 | 91 | 42 | 1 | 54 | 138 | 23 | 113 | 7.39e-18 | 73.9 |
| Msa0873460 | MtrunA17_Chr4g0076001 | 51.852 | 81 | 32 | 3 | 61 | 135 | 33 | 112 | 7.54e-17 | 71.2 |
| Msa0873460 | MtrunA17_Chr8g0374521 | 45.455 | 88 | 39 | 2 | 61 | 139 | 30 | 117 | 1.49e-14 | 65.5 |
| Msa0873460 | MtrunA17_Chr6g0458541 | 44.595 | 74 | 35 | 1 | 62 | 129 | 28 | 101 | 1.75e-13 | 62.4 |
| Msa0873460 | MtrunA17_Chr5g0443101 | 40.964 | 83 | 42 | 2 | 62 | 138 | 31 | 112 | 5.77e-12 | 58.5 |
| Msa0873460 | MtrunA17_Chr4g0019971 | 52.174 | 69 | 27 | 1 | 62 | 124 | 25 | 93 | 1.16e-11 | 57.8 |
| Msa0873460 | MtrunA17_Chr4g0053921 | 43.210 | 81 | 39 | 3 | 61 | 135 | 30 | 109 | 2.30e-11 | 57.0 |
| Msa0873460 | MtrunA17_Chr2g0290101 | 34.454 | 119 | 60 | 3 | 22 | 135 | 8 | 113 | 6.58e-11 | 55.8 |
| Msa0873460 | MtrunA17_Chr4g0007361 | 45.238 | 84 | 36 | 5 | 61 | 135 | 29 | 111 | 6.80e-11 | 55.8 |
| Msa0873460 | MtrunA17_Chr6g0458551 | 38.961 | 77 | 37 | 2 | 59 | 129 | 26 | 98 | 7.52e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCAACTTCTAACAATTA+TGG | 0.223076 | 6_1:+9070231 | Msa0873460:CDS |
| GCTCAAAGATATGCCTGTTT+TGG | 0.329405 | 6_1:-9069167 | None:intergenic |
| GATCCACATGTGGTCGATAT+TGG | 0.330410 | 6_1:+9070096 | Msa0873460:CDS |
| TTTGAATATTCAGAGAGTTC+TGG | 0.371543 | 6_1:+9069331 | Msa0873460:intron |
| ATAATAAGCCACTTGATTCA+TGG | 0.372398 | 6_1:-9069189 | None:intergenic |
| TTCTAAATGATCATATAAAA+CGG | 0.410382 | 6_1:-9070317 | None:intergenic |
| GTTAGCTTCCAATGCTTCCT+TGG | 0.415756 | 6_1:-9069489 | None:intergenic |
| AAGATGCACACGGTGTTTGA+TGG | 0.432109 | 6_1:-9069236 | None:intergenic |
| GTTAGAAGTTGAACCATTGT+TGG | 0.449136 | 6_1:-9070223 | None:intergenic |
| GCTAACATTTGGTGAAAACT+TGG | 0.453597 | 6_1:+9069506 | Msa0873460:CDS |
| TCTAAATGATCATATAAAAC+GGG | 0.457270 | 6_1:-9070316 | None:intergenic |
| AAGCATTGGAAGCTAACATT+TGG | 0.478639 | 6_1:+9069495 | Msa0873460:CDS |
| TTATCTGTTAGAGCCAAAAC+AGG | 0.483318 | 6_1:+9069154 | Msa0873460:CDS |
| CACAATATCAACTACACCAT+TGG | 0.488966 | 6_1:-9070166 | None:intergenic |
| TTGAACCATTGTTGGCAGAA+AGG | 0.489278 | 6_1:-9070215 | None:intergenic |
| GTTCAAAATCTTACTTCCAA+TGG | 0.491098 | 6_1:-9069358 | None:intergenic |
| CTAACAGATAAATCACTCAT+TGG | 0.499035 | 6_1:-9069142 | None:intergenic |
| AGAGAGTTCTGGTAAACCAT+TGG | 0.501513 | 6_1:+9069342 | Msa0873460:intron |
| CTTAGCCTTTCTGCCAACAA+TGG | 0.504724 | 6_1:+9070210 | Msa0873460:CDS |
| TCTTTGAGCCAAGGAAGCAT+TGG | 0.508456 | 6_1:+9069481 | Msa0873460:CDS |
| CATTGTTGGCAGAAAGGCTA+AGG | 0.523958 | 6_1:-9070209 | None:intergenic |
| CAATTATGGAGCCATTGTGT+TGG | 0.531516 | 6_1:+9070245 | Msa0873460:CDS |
| AGGTGAAATTCTTTGAGCCA+AGG | 0.571115 | 6_1:+9069472 | Msa0873460:intron |
| ATGTGGATCATTGATGTCGA+TGG | 0.574874 | 6_1:-9070082 | None:intergenic |
| TGGCTCCTCAAATGATCCAA+TGG | 0.607568 | 6_1:-9070273 | None:intergenic |
| TGCACACGGTGTTTGATGGA+AGG | 0.608295 | 6_1:-9069232 | None:intergenic |
| TTACCAATATCGACCACATG+TGG | 0.609989 | 6_1:-9070099 | None:intergenic |
| AAAACGGGAAATAAGTGCAA+AGG | 0.614824 | 6_1:-9070301 | None:intergenic |
| TGTGGATCATTGATGTCGAT+GGG | 0.641217 | 6_1:-9070081 | None:intergenic |
| AAATAAGTGCAAAGGTTGTG+TGG | 0.643057 | 6_1:-9070293 | None:intergenic |
| TCTTTGAGCCATGAATCAAG+TGG | 0.645590 | 6_1:+9069181 | Msa0873460:CDS |
| TGTTGGCAGAAAGGCTAAGG+CGG | 0.652385 | 6_1:-9070206 | None:intergenic |
| CGACATCAATGATCCACATG+TGG | 0.674716 | 6_1:+9070086 | Msa0873460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAAGAATTACA+GGG | - | chr6_1:9069836-9069855 | None:intergenic | 10.0% |
| !! | AAATAAAATAAAAGAATTAC+AGG | - | chr6_1:9069837-9069856 | None:intergenic | 10.0% |
| !! | AATAAAATAAAAGAATTACA+GGG | - | chr6_1:9069836-9069855 | None:intergenic | 10.0% |
| !! | AAATAAAATAAAAGAATTAC+AGG | - | chr6_1:9069837-9069856 | None:intergenic | 10.0% |
| !!! | ACATTCTTGATATTTTTATT+AGG | + | chr6_1:9069764-9069783 | Msa0873460:intron | 15.0% |
| !!! | CATTCTTGATATTTTTATTA+GGG | + | chr6_1:9069765-9069784 | Msa0873460:intron | 15.0% |
| !! | ATAAAATAAAAGAATTACAG+GGG | - | chr6_1:9069835-9069854 | None:intergenic | 15.0% |
| !! | ATTTCATCTTTGTAAAATAA+AGG | + | chr6_1:9069860-9069879 | Msa0873460:intron | 15.0% |
| !!! | ACATTCTTGATATTTTTATT+AGG | + | chr6_1:9069764-9069783 | Msa0873460:intron | 15.0% |
| !!! | CATTCTTGATATTTTTATTA+GGG | + | chr6_1:9069765-9069784 | Msa0873460:intron | 15.0% |
| !! | ATAAAATAAAAGAATTACAG+GGG | - | chr6_1:9069835-9069854 | None:intergenic | 15.0% |
| !! | ATTTCATCTTTGTAAAATAA+AGG | + | chr6_1:9069860-9069879 | Msa0873460:intron | 15.0% |
| !!! | GTTAATTTTAAATTTCGAAC+AGG | - | chr6_1:9069927-9069946 | None:intergenic | 20.0% |
| !! | ATGTGGAAAATAAAATAAAG+AGG | - | chr6_1:9070024-9070043 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATTTTCCACAT+TGG | + | chr6_1:9070024-9070043 | Msa0873460:intron | 20.0% |
| !!! | GTTAATTTTAAATTTCGAAC+AGG | - | chr6_1:9069927-9069946 | None:intergenic | 20.0% |
| !! | ATGTGGAAAATAAAATAAAG+AGG | - | chr6_1:9070024-9070043 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATTTTCCACAT+TGG | + | chr6_1:9070024-9070043 | Msa0873460:intron | 20.0% |
| ! | TGAAAACTTGGTTAACATTT+GGG | + | chr6_1:9069518-9069537 | Msa0873460:intron | 25.0% |
| ! | CTTCGTAATGTATATGATTT+GGG | - | chr6_1:9069973-9069992 | None:intergenic | 25.0% |
| !!! | TAATGGTATAGCTTTATTTG+TGG | - | chr6_1:9070050-9070069 | None:intergenic | 25.0% |
| ! | TGAAAACTTGGTTAACATTT+GGG | + | chr6_1:9069518-9069537 | Msa0873460:intron | 25.0% |
| ! | CTTCGTAATGTATATGATTT+GGG | - | chr6_1:9069973-9069992 | None:intergenic | 25.0% |
| !!! | TAATGGTATAGCTTTATTTG+TGG | - | chr6_1:9070050-9070069 | None:intergenic | 25.0% |
| ATAATAAGCCACTTGATTCA+TGG | - | chr6_1:9069192-9069211 | None:intergenic | 30.0% | |
| TAAAAAGCAAAAGATGCACA+CGG | - | chr6_1:9069249-9069268 | None:intergenic | 30.0% | |
| TTTGAATATTCAGAGAGTTC+TGG | + | chr6_1:9069331-9069350 | Msa0873460:intron | 30.0% | |
| GTTCAAAATCTTACTTCCAA+TGG | - | chr6_1:9069361-9069380 | None:intergenic | 30.0% | |
| ! | GGAAGTAAGATTTTGAACTT+CGG | + | chr6_1:9069363-9069382 | Msa0873460:intron | 30.0% |
| TACCAACAACATAGAAAACT+TGG | + | chr6_1:9069403-9069422 | Msa0873460:intron | 30.0% | |
| ! | AACCAAGTTTTCTATGTTGT+TGG | - | chr6_1:9069408-9069427 | None:intergenic | 30.0% |
| GTGAAAACTTGGTTAACATT+TGG | + | chr6_1:9069517-9069536 | Msa0873460:intron | 30.0% | |
| ATAGACGCCAAATGAAATTT+GGG | + | chr6_1:9069739-9069758 | Msa0873460:intron | 30.0% | |
| AATGTTGCCCAAATTTCATT+TGG | - | chr6_1:9069749-9069768 | None:intergenic | 30.0% | |
| CGGAAATAACCTATATTACA+GGG | - | chr6_1:9069806-9069825 | None:intergenic | 30.0% | |
| ! | CCTGTAATATAGGTTATTTC+CGG | + | chr6_1:9069804-9069823 | Msa0873460:intron | 30.0% |
| GCTTCGTAATGTATATGATT+TGG | - | chr6_1:9069974-9069993 | None:intergenic | 30.0% | |
| !! | CAAGACAAAACTGATTTTTG+AGG | + | chr6_1:9070137-9070156 | Msa0873460:CDS | 30.0% |
| GGTTCAACTTCTAACAATTA+TGG | + | chr6_1:9070231-9070250 | Msa0873460:CDS | 30.0% | |
| AAAAACCATTGGATCATTTG+AGG | + | chr6_1:9070268-9070287 | Msa0873460:CDS | 30.0% | |
| ATAATAAGCCACTTGATTCA+TGG | - | chr6_1:9069192-9069211 | None:intergenic | 30.0% | |
| TAAAAAGCAAAAGATGCACA+CGG | - | chr6_1:9069249-9069268 | None:intergenic | 30.0% | |
| TTTGAATATTCAGAGAGTTC+TGG | + | chr6_1:9069331-9069350 | Msa0873460:intron | 30.0% | |
| GTTCAAAATCTTACTTCCAA+TGG | - | chr6_1:9069361-9069380 | None:intergenic | 30.0% | |
| ! | GGAAGTAAGATTTTGAACTT+CGG | + | chr6_1:9069363-9069382 | Msa0873460:intron | 30.0% |
| TACCAACAACATAGAAAACT+TGG | + | chr6_1:9069403-9069422 | Msa0873460:intron | 30.0% | |
| ! | AACCAAGTTTTCTATGTTGT+TGG | - | chr6_1:9069408-9069427 | None:intergenic | 30.0% |
| GTGAAAACTTGGTTAACATT+TGG | + | chr6_1:9069517-9069536 | Msa0873460:intron | 30.0% | |
| ATAGACGCCAAATGAAATTT+GGG | + | chr6_1:9069739-9069758 | Msa0873460:intron | 30.0% | |
| AATGTTGCCCAAATTTCATT+TGG | - | chr6_1:9069749-9069768 | None:intergenic | 30.0% | |
| CGGAAATAACCTATATTACA+GGG | - | chr6_1:9069806-9069825 | None:intergenic | 30.0% | |
| ! | CCTGTAATATAGGTTATTTC+CGG | + | chr6_1:9069804-9069823 | Msa0873460:intron | 30.0% |
| GCTTCGTAATGTATATGATT+TGG | - | chr6_1:9069974-9069993 | None:intergenic | 30.0% | |
| !! | CAAGACAAAACTGATTTTTG+AGG | + | chr6_1:9070137-9070156 | Msa0873460:CDS | 30.0% |
| GGTTCAACTTCTAACAATTA+TGG | + | chr6_1:9070231-9070250 | Msa0873460:CDS | 30.0% | |
| AAAAACCATTGGATCATTTG+AGG | + | chr6_1:9070268-9070287 | Msa0873460:CDS | 30.0% | |
| TTATCTGTTAGAGCCAAAAC+AGG | + | chr6_1:9069154-9069173 | Msa0873460:CDS | 35.0% | |
| !! | AAGCATTGGAAGCTAACATT+TGG | + | chr6_1:9069495-9069514 | Msa0873460:CDS | 35.0% |
| ! | GCTAACATTTGGTGAAAACT+TGG | + | chr6_1:9069506-9069525 | Msa0873460:CDS | 35.0% |
| TAGATGAAATCCTTTGAGCT+AGG | + | chr6_1:9069575-9069594 | Msa0873460:intron | 35.0% | |
| GAAAATATCTTTGGCTGCAA+TGG | - | chr6_1:9069604-9069623 | None:intergenic | 35.0% | |
| ! | CAGCCAAAGATATTTTCCTT+GGG | + | chr6_1:9069607-9069626 | Msa0873460:intron | 35.0% |
| GTTCCCAAGGAAAATATCTT+TGG | - | chr6_1:9069613-9069632 | None:intergenic | 35.0% | |
| AGTCATAATGCAGACTAATG+CGG | + | chr6_1:9069666-9069685 | Msa0873460:intron | 35.0% | |
| ATCACTCAATAACGAAAGAC+AGG | + | chr6_1:9069690-9069709 | Msa0873460:intron | 35.0% | |
| TCATTTGGCGTCTATGTATA+TGG | - | chr6_1:9069734-9069753 | None:intergenic | 35.0% | |
| CATAGACGCCAAATGAAATT+TGG | + | chr6_1:9069738-9069757 | Msa0873460:intron | 35.0% | |
| GTGTTTCATCCCTGTAATAT+AGG | + | chr6_1:9069794-9069813 | Msa0873460:intron | 35.0% | |
| CCGGAAATAACCTATATTAC+AGG | - | chr6_1:9069807-9069826 | None:intergenic | 35.0% | |
| !! | ATTTTTGAGGAAGTCACCAA+TGG | + | chr6_1:9070150-9070169 | Msa0873460:CDS | 35.0% |
| CACAATATCAACTACACCAT+TGG | - | chr6_1:9070169-9070188 | None:intergenic | 35.0% | |
| GTTAGAAGTTGAACCATTGT+TGG | - | chr6_1:9070226-9070245 | None:intergenic | 35.0% | |
| ! | CAATGGTTTTTCCAACACAA+TGG | - | chr6_1:9070259-9070278 | None:intergenic | 35.0% |
| CATTGTGTTGGAAAAACCAT+TGG | + | chr6_1:9070257-9070276 | Msa0873460:CDS | 35.0% | |
| AAATAAGTGCAAAGGTTGTG+TGG | - | chr6_1:9070296-9070315 | None:intergenic | 35.0% | |
| AAAACGGGAAATAAGTGCAA+AGG | - | chr6_1:9070304-9070323 | None:intergenic | 35.0% | |
| TTATCTGTTAGAGCCAAAAC+AGG | + | chr6_1:9069154-9069173 | Msa0873460:CDS | 35.0% | |
| !! | AAGCATTGGAAGCTAACATT+TGG | + | chr6_1:9069495-9069514 | Msa0873460:CDS | 35.0% |
| ! | GCTAACATTTGGTGAAAACT+TGG | + | chr6_1:9069506-9069525 | Msa0873460:CDS | 35.0% |
| TAGATGAAATCCTTTGAGCT+AGG | + | chr6_1:9069575-9069594 | Msa0873460:intron | 35.0% | |
| GAAAATATCTTTGGCTGCAA+TGG | - | chr6_1:9069604-9069623 | None:intergenic | 35.0% | |
| ! | CAGCCAAAGATATTTTCCTT+GGG | + | chr6_1:9069607-9069626 | Msa0873460:intron | 35.0% |
| GTTCCCAAGGAAAATATCTT+TGG | - | chr6_1:9069613-9069632 | None:intergenic | 35.0% | |
| AGTCATAATGCAGACTAATG+CGG | + | chr6_1:9069666-9069685 | Msa0873460:intron | 35.0% | |
| ATCACTCAATAACGAAAGAC+AGG | + | chr6_1:9069690-9069709 | Msa0873460:intron | 35.0% | |
| TCATTTGGCGTCTATGTATA+TGG | - | chr6_1:9069734-9069753 | None:intergenic | 35.0% | |
| CATAGACGCCAAATGAAATT+TGG | + | chr6_1:9069738-9069757 | Msa0873460:intron | 35.0% | |
| GTGTTTCATCCCTGTAATAT+AGG | + | chr6_1:9069794-9069813 | Msa0873460:intron | 35.0% | |
| CCGGAAATAACCTATATTAC+AGG | - | chr6_1:9069807-9069826 | None:intergenic | 35.0% | |
| !! | ATTTTTGAGGAAGTCACCAA+TGG | + | chr6_1:9070150-9070169 | Msa0873460:CDS | 35.0% |
| CACAATATCAACTACACCAT+TGG | - | chr6_1:9070169-9070188 | None:intergenic | 35.0% | |
| GTTAGAAGTTGAACCATTGT+TGG | - | chr6_1:9070226-9070245 | None:intergenic | 35.0% | |
| ! | CAATGGTTTTTCCAACACAA+TGG | - | chr6_1:9070259-9070278 | None:intergenic | 35.0% |
| CATTGTGTTGGAAAAACCAT+TGG | + | chr6_1:9070257-9070276 | Msa0873460:CDS | 35.0% | |
| AAATAAGTGCAAAGGTTGTG+TGG | - | chr6_1:9070296-9070315 | None:intergenic | 35.0% | |
| AAAACGGGAAATAAGTGCAA+AGG | - | chr6_1:9070304-9070323 | None:intergenic | 35.0% | |
| ! | GCTCAAAGATATGCCTGTTT+TGG | - | chr6_1:9069170-9069189 | None:intergenic | 40.0% |
| TCTTTGAGCCATGAATCAAG+TGG | + | chr6_1:9069181-9069200 | Msa0873460:CDS | 40.0% | |
| ! | AGAGAGTTCTGGTAAACCAT+TGG | + | chr6_1:9069342-9069361 | Msa0873460:intron | 40.0% |
| CTTCGGTCCAATTCTTATGT+CGG | + | chr6_1:9069380-9069399 | Msa0873460:intron | 40.0% | |
| !! | GTTGGTACCGACATAAGAAT+TGG | - | chr6_1:9069390-9069409 | None:intergenic | 40.0% |
| TTACTCCAGTAGCTTCACAA+AGG | + | chr6_1:9069433-9069452 | Msa0873460:intron | 40.0% | |
| AGGTGAAATTCTTTGAGCCA+AGG | + | chr6_1:9069472-9069491 | Msa0873460:intron | 40.0% | |
| AACTTGGTTAACATTTGGGC+AGG | + | chr6_1:9069522-9069541 | Msa0873460:intron | 40.0% | |
| ! | GCAGCCAAAGATATTTTCCT+TGG | + | chr6_1:9069606-9069625 | Msa0873460:intron | 40.0% |
| TCCTTGGGAACTATCAAGAT+TGG | + | chr6_1:9069622-9069641 | Msa0873460:intron | 40.0% | |
| ! | TCCAATCTTGATAGTTCCCA+AGG | - | chr6_1:9069626-9069645 | None:intergenic | 40.0% |
| AAGAATTACAGGGGATACAC+CGG | - | chr6_1:9069826-9069845 | None:intergenic | 40.0% | |
| ATTTGGGCATAATCACACGA+GGG | - | chr6_1:9069957-9069976 | None:intergenic | 40.0% | |
| !! | AGCTTTATTTGTGGCCAATG+TGG | - | chr6_1:9070041-9070060 | None:intergenic | 40.0% |
| !! | GATGGGCTAGAATTAGGTAA+TGG | - | chr6_1:9070067-9070086 | None:intergenic | 40.0% |
| TGTGGATCATTGATGTCGAT+GGG | - | chr6_1:9070084-9070103 | None:intergenic | 40.0% | |
| ATGTGGATCATTGATGTCGA+TGG | - | chr6_1:9070085-9070104 | None:intergenic | 40.0% | |
| TTACCAATATCGACCACATG+TGG | - | chr6_1:9070102-9070121 | None:intergenic | 40.0% | |
| TTGAACCATTGTTGGCAGAA+AGG | - | chr6_1:9070218-9070237 | None:intergenic | 40.0% | |
| CAATTATGGAGCCATTGTGT+TGG | + | chr6_1:9070245-9070264 | Msa0873460:CDS | 40.0% | |
| ! | GCTCAAAGATATGCCTGTTT+TGG | - | chr6_1:9069170-9069189 | None:intergenic | 40.0% |
| TCTTTGAGCCATGAATCAAG+TGG | + | chr6_1:9069181-9069200 | Msa0873460:CDS | 40.0% | |
| ! | AGAGAGTTCTGGTAAACCAT+TGG | + | chr6_1:9069342-9069361 | Msa0873460:intron | 40.0% |
| CTTCGGTCCAATTCTTATGT+CGG | + | chr6_1:9069380-9069399 | Msa0873460:intron | 40.0% | |
| !! | GTTGGTACCGACATAAGAAT+TGG | - | chr6_1:9069390-9069409 | None:intergenic | 40.0% |
| TTACTCCAGTAGCTTCACAA+AGG | + | chr6_1:9069433-9069452 | Msa0873460:intron | 40.0% | |
| AGGTGAAATTCTTTGAGCCA+AGG | + | chr6_1:9069472-9069491 | Msa0873460:intron | 40.0% | |
| AACTTGGTTAACATTTGGGC+AGG | + | chr6_1:9069522-9069541 | Msa0873460:intron | 40.0% | |
| ! | GCAGCCAAAGATATTTTCCT+TGG | + | chr6_1:9069606-9069625 | Msa0873460:intron | 40.0% |
| TCCTTGGGAACTATCAAGAT+TGG | + | chr6_1:9069622-9069641 | Msa0873460:intron | 40.0% | |
| ! | TCCAATCTTGATAGTTCCCA+AGG | - | chr6_1:9069626-9069645 | None:intergenic | 40.0% |
| AAGAATTACAGGGGATACAC+CGG | - | chr6_1:9069826-9069845 | None:intergenic | 40.0% | |
| ATTTGGGCATAATCACACGA+GGG | - | chr6_1:9069957-9069976 | None:intergenic | 40.0% | |
| !! | AGCTTTATTTGTGGCCAATG+TGG | - | chr6_1:9070041-9070060 | None:intergenic | 40.0% |
| !! | GATGGGCTAGAATTAGGTAA+TGG | - | chr6_1:9070067-9070086 | None:intergenic | 40.0% |
| TGTGGATCATTGATGTCGAT+GGG | - | chr6_1:9070084-9070103 | None:intergenic | 40.0% | |
| ATGTGGATCATTGATGTCGA+TGG | - | chr6_1:9070085-9070104 | None:intergenic | 40.0% | |
| TTACCAATATCGACCACATG+TGG | - | chr6_1:9070102-9070121 | None:intergenic | 40.0% | |
| TTGAACCATTGTTGGCAGAA+AGG | - | chr6_1:9070218-9070237 | None:intergenic | 40.0% | |
| CAATTATGGAGCCATTGTGT+TGG | + | chr6_1:9070245-9070264 | Msa0873460:CDS | 40.0% | |
| AAGATGCACACGGTGTTTGA+TGG | - | chr6_1:9069239-9069258 | None:intergenic | 45.0% | |
| AAGGCTGACATTGCAATGAC+AGG | + | chr6_1:9069452-9069471 | Msa0873460:intron | 45.0% | |
| ! | TCTTTGAGCCAAGGAAGCAT+TGG | + | chr6_1:9069481-9069500 | Msa0873460:CDS | 45.0% |
| ! | GTTAGCTTCCAATGCTTCCT+TGG | - | chr6_1:9069492-9069511 | None:intergenic | 45.0% |
| ! | GCAATGGATTCCTAGCTCAA+AGG | - | chr6_1:9069588-9069607 | None:intergenic | 45.0% |
| GATTTGGGCATAATCACACG+AGG | - | chr6_1:9069958-9069977 | None:intergenic | 45.0% | |
| !! | GATGTCGATGGGCTAGAATT+AGG | - | chr6_1:9070073-9070092 | None:intergenic | 45.0% |
| CGACATCAATGATCCACATG+TGG | + | chr6_1:9070086-9070105 | Msa0873460:CDS | 45.0% | |
| GATCCACATGTGGTCGATAT+TGG | + | chr6_1:9070096-9070115 | Msa0873460:CDS | 45.0% | |
| CATTGTTGGCAGAAAGGCTA+AGG | - | chr6_1:9070212-9070231 | None:intergenic | 45.0% | |
| ! | CTTAGCCTTTCTGCCAACAA+TGG | + | chr6_1:9070210-9070229 | Msa0873460:CDS | 45.0% |
| TGGCTCCTCAAATGATCCAA+TGG | - | chr6_1:9070276-9070295 | None:intergenic | 45.0% | |
| AAGATGCACACGGTGTTTGA+TGG | - | chr6_1:9069239-9069258 | None:intergenic | 45.0% | |
| AAGGCTGACATTGCAATGAC+AGG | + | chr6_1:9069452-9069471 | Msa0873460:intron | 45.0% | |
| ! | TCTTTGAGCCAAGGAAGCAT+TGG | + | chr6_1:9069481-9069500 | Msa0873460:CDS | 45.0% |
| ! | GTTAGCTTCCAATGCTTCCT+TGG | - | chr6_1:9069492-9069511 | None:intergenic | 45.0% |
| ! | GCAATGGATTCCTAGCTCAA+AGG | - | chr6_1:9069588-9069607 | None:intergenic | 45.0% |
| GATTTGGGCATAATCACACG+AGG | - | chr6_1:9069958-9069977 | None:intergenic | 45.0% | |
| !! | GATGTCGATGGGCTAGAATT+AGG | - | chr6_1:9070073-9070092 | None:intergenic | 45.0% |
| CGACATCAATGATCCACATG+TGG | + | chr6_1:9070086-9070105 | Msa0873460:CDS | 45.0% | |
| GATCCACATGTGGTCGATAT+TGG | + | chr6_1:9070096-9070115 | Msa0873460:CDS | 45.0% | |
| CATTGTTGGCAGAAAGGCTA+AGG | - | chr6_1:9070212-9070231 | None:intergenic | 45.0% | |
| ! | CTTAGCCTTTCTGCCAACAA+TGG | + | chr6_1:9070210-9070229 | Msa0873460:CDS | 45.0% |
| TGGCTCCTCAAATGATCCAA+TGG | - | chr6_1:9070276-9070295 | None:intergenic | 45.0% | |
| TGCACACGGTGTTTGATGGA+AGG | - | chr6_1:9069235-9069254 | None:intergenic | 50.0% | |
| GTCAGCCTTTGTGAAGCTAC+TGG | - | chr6_1:9069441-9069460 | None:intergenic | 50.0% | |
| TGTTGGCAGAAAGGCTAAGG+CGG | - | chr6_1:9070209-9070228 | None:intergenic | 50.0% | |
| TGCACACGGTGTTTGATGGA+AGG | - | chr6_1:9069235-9069254 | None:intergenic | 50.0% | |
| GTCAGCCTTTGTGAAGCTAC+TGG | - | chr6_1:9069441-9069460 | None:intergenic | 50.0% | |
| TGTTGGCAGAAAGGCTAAGG+CGG | - | chr6_1:9070209-9070228 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 9069145 | 9070329 | 9069145 | ID=Msa0873460;Name=Msa0873460 |
| chr6_1 | mRNA | 9069145 | 9070329 | 9069145 | ID=Msa0873460-mRNA-1;Parent=Msa0873460;Name=Msa0873460-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.25|1|1|4|0|142 |
| chr6_1 | exon | 9069145 | 9069247 | 9069145 | ID=Msa0873460-mRNA-1:exon:2749;Parent=Msa0873460-mRNA-1 |
| chr6_1 | exon | 9069344 | 9069366 | 9069344 | ID=Msa0873460-mRNA-1:exon:2750;Parent=Msa0873460-mRNA-1 |
| chr6_1 | exon | 9069474 | 9069527 | 9069474 | ID=Msa0873460-mRNA-1:exon:2751;Parent=Msa0873460-mRNA-1 |
| chr6_1 | exon | 9070081 | 9070329 | 9070081 | ID=Msa0873460-mRNA-1:exon:2752;Parent=Msa0873460-mRNA-1 |
| chr6_1 | CDS | 9069145 | 9069247 | 9069145 | ID=Msa0873460-mRNA-1:cds;Parent=Msa0873460-mRNA-1 |
| chr6_1 | CDS | 9069344 | 9069366 | 9069344 | ID=Msa0873460-mRNA-1:cds;Parent=Msa0873460-mRNA-1 |
| chr6_1 | CDS | 9069474 | 9069527 | 9069474 | ID=Msa0873460-mRNA-1:cds;Parent=Msa0873460-mRNA-1 |
| chr6_1 | CDS | 9070081 | 9070329 | 9070081 | ID=Msa0873460-mRNA-1:cds;Parent=Msa0873460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
