AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579230 MtrunA17_Chr4g0043721 83.019 159 3 2 3 139 1 157 1.16e-89 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579230 AT1G21065.1 67.188 128 20 1 34 139 67 194 1.98e-56 176

Find 86 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTCTGTCTATGTTTC+AGG 0.081428 4_1:-83846755 Msa0579230:three_prime_UTR
TGCTGCGCTTTCACGCTTAA+TGG 0.223647 4_1:+83849942 None:intergenic
ACTCAGATTACATTGTAAAA+AGG 0.228703 4_1:+83846584 None:intergenic
TGTCTATGTTTCAGGGTATA+TGG 0.238559 4_1:-83846747 Msa0579230:three_prime_UTR
TTAAGCTTTCCATTTGTAAT+TGG 0.251097 4_1:+83847911 None:intergenic
GTCGGAAAATGATTAATAAT+TGG 0.260517 4_1:+83847734 None:intergenic
GATTTACCTATAGACGTTCT+TGG 0.290255 4_1:-83847851 Msa0579230:CDS
AAATAAAATGACTAATGATT+TGG 0.299561 4_1:+83846498 None:intergenic
AGAGTGGTTGTCACTCTTAA+TGG 0.316738 4_1:-83846691 Msa0579230:three_prime_UTR
TCTACCAATCACTAAATATA+TGG 0.332464 4_1:+83847565 None:intergenic
CTGAATCCACCGCTCCCAAA+TGG 0.374424 4_1:-83849890 Msa0579230:CDS
CTACTTCTGTCTATGTTTCA+GGG 0.376327 4_1:-83846754 Msa0579230:three_prime_UTR
CATATTAAGTCATCAATGTT+TGG 0.383226 4_1:-83848036 Msa0579230:CDS
CACAGTTGCATTGCATTCAT+AGG 0.389222 4_1:+83846556 None:intergenic
AATGCCATATATTTAGTGAT+TGG 0.395233 4_1:-83847569 Msa0579230:three_prime_UTR
AATTCGATTGAGGAATGTTT+CGG 0.407385 4_1:+83849496 None:intergenic
GCTTTGATTCGCCTTCATTT+CGG 0.408180 4_1:-83846644 Msa0579230:three_prime_UTR
TTAATGGAATATGAGGTGTT+TGG 0.431682 4_1:-83846675 Msa0579230:three_prime_UTR
TTCATTTCGGAACTTATAGC+TGG 0.432935 4_1:-83846631 Msa0579230:three_prime_UTR
TTTATGCGCATGTACGTTCA+AGG 0.440887 4_1:-83847657 Msa0579230:three_prime_UTR
TTCAGGATACCAATTACAAA+TGG 0.444301 4_1:-83847920 Msa0579230:intron
CATAAGGATAAACTTTATTG+AGG 0.447853 4_1:+83847055 None:intergenic
GTAGATATGTTTCAAACCAT+TGG 0.448097 4_1:-83847547 Msa0579230:three_prime_UTR
GCTTGAGATGGATAATTGTT+CGG 0.449523 4_1:-83846891 Msa0579230:three_prime_UTR
GTCACTCTTAATGGAATATG+AGG 0.455709 4_1:-83846682 Msa0579230:three_prime_UTR
GCTTGACCAAGAACGTCTAT+AGG 0.458750 4_1:+83847845 None:intergenic
AGATGACAGCCGCGTTTGTA+AGG 0.461854 4_1:+83849843 None:intergenic
TCAAGTGCCCGTGTGATGTA+AGG 0.469687 4_1:+83847333 None:intergenic
GCAAGTGCTACTCACACGTT+TGG 0.472072 4_1:+83850160 None:intergenic
TGCAGGGGCCATCTGCACCT+TGG 0.473611 4_1:-83849387 Msa0579230:intron
CCCTCTAGAGTGTGCTTCCA+AGG 0.475370 4_1:+83849370 None:intergenic
TGAATCCACCGCTCCCAAAT+GGG 0.475393 4_1:-83849889 Msa0579230:CDS
GCATTGCTTGTCCACAATGT+AGG 0.482245 4_1:-83847181 Msa0579230:three_prime_UTR
AGCTATAAGTTCCGAAATGA+AGG 0.482886 4_1:+83846633 None:intergenic
ATGGCATTAATGAGGAATTA+CGG 0.486763 4_1:+83847584 None:intergenic
GAAAATGATTAATAATTGGT+AGG 0.499509 4_1:+83847738 None:intergenic
CTGTCATCTTGTTACTCCCA+AGG 0.510680 4_1:-83849829 Msa0579230:intron
CTTGTCCACAATGTAGGTAA+TGG 0.514655 4_1:-83847175 Msa0579230:three_prime_UTR
ACTATTGAATTTGAGTATGT+TGG 0.516726 4_1:-83847788 Msa0579230:three_prime_UTR
AAATGTGTGAAATGCAAAAG+TGG 0.520631 4_1:+83847376 None:intergenic
GCTTAACATGGGAACCTGGC+AGG 0.523728 4_1:-83847894 Msa0579230:CDS
GTATATGGCTTTGTGAGCAC+CGG 0.524933 4_1:-83846732 Msa0579230:three_prime_UTR
TACTAACAACATTACATTGG+TGG 0.525839 4_1:-83847246 Msa0579230:three_prime_UTR
CTGGGCCCATTTGGGAGCGG+TGG 0.526538 4_1:+83849884 None:intergenic
GAAAGCTTAACATGGGAACC+TGG 0.533663 4_1:-83847898 Msa0579230:CDS
TTTATATTGTCAGATGGAGA+TGG 0.537561 4_1:-83850198 None:intergenic
AGTAAACGATGTTACCTGCC+AGG 0.545004 4_1:+83847880 None:intergenic
TTTCTGGGCCCATTTGGGAG+CGG 0.545582 4_1:+83849881 None:intergenic
ACAGCACTACATGTCAAGAT+TGG 0.546298 4_1:-83847436 Msa0579230:three_prime_UTR
TTGTCAGATGGAGATGGGTG+TGG 0.547361 4_1:-83850192 None:intergenic
ATTGATGACTTAATATGAGC+CGG 0.551506 4_1:+83848042 None:intergenic
GAATAATTATATGCACTAAG+TGG 0.552789 4_1:+83846520 None:intergenic
AACAGTGTATTGTATACCAA+TGG 0.553581 4_1:+83847531 None:intergenic
GTGTGCTTCCAAGGTGCAGA+TGG 0.554212 4_1:+83849379 None:intergenic
TGATTAAGAGTTGCTTGAGA+TGG 0.554442 4_1:-83846903 Msa0579230:three_prime_UTR
CTTGAAGACAAAAGAATCCA+TGG 0.555822 4_1:-83849913 Msa0579230:CDS
TTATATTGTCAGATGGAGAT+GGG 0.562843 4_1:-83850197 None:intergenic
CCTCGGGAACAATTCGATTG+AGG 0.564302 4_1:+83849486 None:intergenic
CCTTGGAAGCACACTCTAGA+GGG 0.564381 4_1:-83849370 Msa0579230:intron
TCGTATCTAAGAAGAGCTGA+TGG 0.571475 4_1:-83847221 Msa0579230:three_prime_UTR
ATTAAATTCCTTACATCACA+CGG 0.578972 4_1:-83847341 Msa0579230:three_prime_UTR
TGTAGGTCATGATGACATGC+CGG 0.579488 4_1:-83848061 Msa0579230:intron
CTAAATATATGGCATTAATG+AGG 0.582997 4_1:+83847576 None:intergenic
AATTATATGCACTAAGTGGT+CGG 0.589344 4_1:+83846524 None:intergenic
TTTGTAAGGTGGTAGAGCGA+TGG 0.592048 4_1:+83849857 None:intergenic
GGGAGCGGTGGATTCAGCCA+TGG 0.593135 4_1:+83849896 None:intergenic
TACAAATGGAAAGCTTAACA+TGG 0.595390 4_1:-83847906 Msa0579230:CDS
ACAACCACTCTTCGTGAGGT+AGG 0.608382 4_1:+83846703 None:intergenic
AACTGCCATTACCTACATTG+TGG 0.608606 4_1:+83847170 None:intergenic
AAACATCACATGGATAGTGT+AGG 0.611589 4_1:+83847404 None:intergenic
TGACAGCCGCGTTTGTAAGG+TGG 0.611847 4_1:+83849846 None:intergenic
CAGTAGTGCAATCATTTGCA+AGG 0.614160 4_1:+83846863 None:intergenic
TCATCCTACCTCACGAAGAG+TGG 0.624302 4_1:-83846707 Msa0579230:three_prime_UTR
TTCGTGAGGTAGGATGATCC+CGG 0.626171 4_1:+83846713 None:intergenic
TATATGGCTTTGTGAGCACC+GGG 0.627807 4_1:-83846731 Msa0579230:three_prime_UTR
CCTCAATCGAATTGTTCCCG+AGG 0.630614 4_1:-83849486 Msa0579230:intron
ACCTTGGAAGCACACTCTAG+AGG 0.633350 4_1:-83849371 Msa0579230:CDS
ATCAGCTCTTCTTAGATACG+AGG 0.635175 4_1:+83847223 None:intergenic
ATCACATGGATAGTGTAGGA+AGG 0.647422 4_1:+83847408 None:intergenic
ACAAATGGAAAGCTTAACAT+GGG 0.648618 4_1:-83847905 Msa0579230:CDS
TGCTACTAACAACATTACAT+TGG 0.650670 4_1:-83847249 Msa0579230:three_prime_UTR
CTTATCTGTGTAAAATCACG+AGG 0.652210 4_1:-83847295 Msa0579230:three_prime_UTR
TTAAATTCCTTACATCACAC+GGG 0.668503 4_1:-83847340 Msa0579230:three_prime_UTR
AGTGGTTGAGAAACATCACA+TGG 0.686200 4_1:+83847394 None:intergenic
AGTGACAACCACTCTTCGTG+AGG 0.692534 4_1:+83846699 None:intergenic
GCTCTACCACCTTACAAACG+CGG 0.803139 4_1:-83849852 Msa0579230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAACTTTAAATATGATTA+AGG - chr4_1:83847305-83847324 Msa0579230:three_prime_UTR 10.0%
!!! TTTGAAATATTTTATAATGT+TGG - chr4_1:83849680-83849699 Msa0579230:intron 10.0%
!! AGTAAATGAAAAATGAAATT+GGG + chr4_1:83846838-83846857 None:intergenic 15.0%
!! AAGTAAATGAAAAATGAAAT+TGG + chr4_1:83846839-83846858 None:intergenic 15.0%
!! ATGAATGAATAAACAAATAT+TGG + chr4_1:83847163-83847182 None:intergenic 15.0%
!! TATAACAAAAGAAAAAACAA+AGG + chr4_1:83847474-83847493 None:intergenic 15.0%
!!! TTTCTTTTTGTAAAATAACA+AGG + chr4_1:83849139-83849158 None:intergenic 15.0%
!!! AATTTGCTTATTAAAAATTG+TGG - chr4_1:83849473-83849492 Msa0579230:intron 15.0%
!!! AATGTGTTTTTTTATTCATA+AGG + chr4_1:83849575-83849594 None:intergenic 15.0%
!! AAATAAAATGACTAATGATT+TGG + chr4_1:83850116-83850135 None:intergenic 15.0%
!!! ATCTTTTTTTTTTTCCTTCT+AGG - chr4_1:83846609-83846628 Msa0579230:three_prime_UTR 20.0%
!! TAAATGAAAAATGAAATTGG+GGG + chr4_1:83846836-83846855 None:intergenic 20.0%
!! GTAAATGAAAAATGAAATTG+GGG + chr4_1:83846837-83846856 None:intergenic 20.0%
!! TCTGAAGAAAAAAAATAGTT+GGG + chr4_1:83846871-83846890 None:intergenic 20.0%
!! ATCTGAAGAAAAAAAATAGT+TGG + chr4_1:83846872-83846891 None:intergenic 20.0%
!!! ACTATTTTTTTTCTTCAGAT+AGG - chr4_1:83846872-83846891 Msa0579230:three_prime_UTR 20.0%
!!! CTATTTTTTTTCTTCAGATA+GGG - chr4_1:83846873-83846892 Msa0579230:three_prime_UTR 20.0%
!! AATAAACAAATATTGGTGAA+TGG + chr4_1:83847156-83847175 None:intergenic 20.0%
!! TTTAAATATGATTAAGGAGT+AGG - chr4_1:83847311-83847330 Msa0579230:three_prime_UTR 20.0%
!! TAGTTTATAGTAGGTATAAT+GGG + chr4_1:83847963-83847982 None:intergenic 20.0%
!! ATAGTTTATAGTAGGTATAA+TGG + chr4_1:83847964-83847983 None:intergenic 20.0%
!! ACTTCATTATAGTTTATAGT+AGG + chr4_1:83847972-83847991 None:intergenic 20.0%
!! AAATATTTAGATTCTGTTCT+TGG - chr4_1:83848230-83848249 Msa0579230:intron 20.0%
!! AATATTTAGATTCTGTTCTT+GGG - chr4_1:83848231-83848250 Msa0579230:intron 20.0%
!! AAGCAAAAAAATGCTTAAAA+TGG + chr4_1:83848332-83848351 None:intergenic 20.0%
!!! AATTCAATAGTAACTTTTGT+GGG + chr4_1:83848814-83848833 None:intergenic 20.0%
!!! AAATTCAATAGTAACTTTTG+TGG + chr4_1:83848815-83848834 None:intergenic 20.0%
!! GAAAATGATTAATAATTGGT+AGG + chr4_1:83848876-83848895 None:intergenic 20.0%
!!! GATTTTTATAAGAATTTGGT+CGG + chr4_1:83848898-83848917 None:intergenic 20.0%
!!! TCGTGATTTTTATAAGAATT+TGG + chr4_1:83848902-83848921 None:intergenic 20.0%
! AAAATTGTGAGATTGAGATT+GGG + chr4_1:83846813-83846832 None:intergenic 25.0%
! CTGAAGAAAAAAAATAGTTG+GGG + chr4_1:83846870-83846889 None:intergenic 25.0%
! AAAAGAAAAAACAAAGGCAA+AGG + chr4_1:83847468-83847487 None:intergenic 25.0%
! ATAAACGCTAATCATATAAG+TGG + chr4_1:83847521-83847540 None:intergenic 25.0%
! TCTTGTATATAACATTGCTT+CGG - chr4_1:83847809-83847828 Msa0579230:three_prime_UTR 25.0%
!! TCCATCTCAGTTTAATTTAT+TGG - chr4_1:83848198-83848217 Msa0579230:intron 25.0%
! ACCAATAAATTAAACTGAGA+TGG + chr4_1:83848202-83848221 None:intergenic 25.0%
! ATATTTAGATTCTGTTCTTG+GGG - chr4_1:83848232-83848251 Msa0579230:intron 25.0%
! CTTAATATCCAAACACAAAT+TGG + chr4_1:83848305-83848324 None:intergenic 25.0%
!! ATTTGATAGTCTAAGTAAAC+TGG + chr4_1:83848405-83848424 None:intergenic 25.0%
! GAAAACACGTAAATTATACT+TGG + chr4_1:83848470-83848489 None:intergenic 25.0%
! CATATTAAGTCATCAATGTT+TGG - chr4_1:83848575-83848594 Msa0579230:intron 25.0%
! TTAAGCTTTCCATTTGTAAT+TGG + chr4_1:83848703-83848722 None:intergenic 25.0%
! ACTATTGAATTTGAGTATGT+TGG - chr4_1:83848823-83848842 Msa0579230:intron 25.0%
! GTCGGAAAATGATTAATAAT+TGG + chr4_1:83848880-83848899 None:intergenic 25.0%
!!! GTCATTGATTTTTTTACTCT+GGG + chr4_1:83848925-83848944 None:intergenic 25.0%
!!! AGTCATTGATTTTTTTACTC+TGG + chr4_1:83848926-83848945 None:intergenic 25.0%
! GAGTAAAAAAATCAATGACT+AGG - chr4_1:83848926-83848945 Msa0579230:intron 25.0%
! CTAAATATATGGCATTAATG+AGG + chr4_1:83849038-83849057 None:intergenic 25.0%
! AATGCCATATATTTAGTGAT+TGG - chr4_1:83849042-83849061 Msa0579230:intron 25.0%
! TCTACCAATCACTAAATATA+TGG + chr4_1:83849049-83849068 None:intergenic 25.0%
! ATTAAATTCCTTACATCACA+CGG - chr4_1:83849270-83849289 Msa0579230:intron 25.0%
!!! GATGGAAAACTTATTTTCTT+AGG - chr4_1:83849408-83849427 Msa0579230:intron 25.0%
!! TAAATTTTCTTCAAAGCCTT+CGG + chr4_1:83849500-83849519 None:intergenic 25.0%
!!! AACGTCATTTATTTTTGTAC+TGG - chr4_1:83849527-83849546 Msa0579230:CDS 25.0%
!!! ACGTCATTTATTTTTGTACT+GGG - chr4_1:83849528-83849547 Msa0579230:CDS 25.0%
! CATAAGGATAAACTTTATTG+AGG + chr4_1:83849559-83849578 None:intergenic 25.0%
! CTCAGATTACATTGTAAAAA+GGG + chr4_1:83850029-83850048 None:intergenic 25.0%
! ACTCAGATTACATTGTAAAA+AGG + chr4_1:83850030-83850049 None:intergenic 25.0%
! GAATAATTATATGCACTAAG+TGG + chr4_1:83850094-83850113 None:intergenic 25.0%
AAATATCAACCAAAACGACT+GGG + chr4_1:83846479-83846498 None:intergenic 30.0%
AAAATATCAACCAAAACGAC+TGG + chr4_1:83846480-83846499 None:intergenic 30.0%
! ATTCTTTTGTCTTCAAGGTT+GGG + chr4_1:83846695-83846714 None:intergenic 30.0%
GAAAATTGTGAGATTGAGAT+TGG + chr4_1:83846814-83846833 None:intergenic 30.0%
TATATACTCACAGAAGAGAT+GGG + chr4_1:83846942-83846961 None:intergenic 30.0%
ATATATACTCACAGAAGAGA+TGG + chr4_1:83846943-83846962 None:intergenic 30.0%
AATTTGTGCTGAAATGAAGT+TGG - chr4_1:83847019-83847038 Msa0579230:three_prime_UTR 30.0%
AATTCGATTGAGGAATGTTT+CGG + chr4_1:83847118-83847137 None:intergenic 30.0%
! GTAGTTTTTGTAAGCTATCA+TGG + chr4_1:83847427-83847446 None:intergenic 30.0%
AAGAGAAAATTGCATTACTG+AGG + chr4_1:83847593-83847612 None:intergenic 30.0%
AATGGTTCTTCAAATGATAG+AGG + chr4_1:83847673-83847692 None:intergenic 30.0%
TTACAATCAGAGTATGTGAA+TGG + chr4_1:83847691-83847710 None:intergenic 30.0%
GAAGCAATGTTATATACAAG+AGG + chr4_1:83847810-83847829 None:intergenic 30.0%
TGTTTAGTTGTTGCATGTTA+CGG + chr4_1:83847851-83847870 None:intergenic 30.0%
! ATGTCCGTTAATTTTGAACT+GGG - chr4_1:83848138-83848157 Msa0579230:intron 30.0%
! CTTATTATGTAATTTGCACG+TGG - chr4_1:83848276-83848295 Msa0579230:intron 30.0%
!!! CTTTGGTTTTGCAATTTTGT+AGG - chr4_1:83848533-83848552 Msa0579230:intron 30.0%
! ATTGATGACTTAATATGAGC+CGG + chr4_1:83848572-83848591 None:intergenic 30.0%
TGAAAATACAAGACATCAGT+AGG + chr4_1:83848675-83848694 None:intergenic 30.0%
! TACTGATGTCTTGTATTTTC+AGG - chr4_1:83848674-83848693 Msa0579230:intron 30.0%
TTCAGGATACCAATTACAAA+TGG - chr4_1:83848691-83848710 Msa0579230:intron 30.0%
TACAAATGGAAAGCTTAACA+TGG - chr4_1:83848705-83848724 Msa0579230:intron 30.0%
ACAAATGGAAAGCTTAACAT+GGG - chr4_1:83848706-83848725 Msa0579230:intron 30.0%
! TTGAACATATGTTTTCAGTG+TGG - chr4_1:83848979-83848998 Msa0579230:intron 30.0%
! TGAACATATGTTTTCAGTGT+GGG - chr4_1:83848980-83848999 Msa0579230:intron 30.0%
ATGGCATTAATGAGGAATTA+CGG + chr4_1:83849030-83849049 None:intergenic 30.0%
GTAGATATGTTTCAAACCAT+TGG - chr4_1:83849064-83849083 Msa0579230:intron 30.0%
AACAGTGTATTGTATACCAA+TGG + chr4_1:83849083-83849102 None:intergenic 30.0%
AAATGTGTGAAATGCAAAAG+TGG + chr4_1:83849238-83849257 None:intergenic 30.0%
! GCATTTCACACATTTTTACT+TGG - chr4_1:83849243-83849262 Msa0579230:intron 30.0%
TTAAATTCCTTACATCACAC+GGG - chr4_1:83849271-83849290 Msa0579230:intron 30.0%
TGCTACTAACAACATTACAT+TGG - chr4_1:83849362-83849381 Msa0579230:intron 30.0%
TACTAACAACATTACATTGG+TGG - chr4_1:83849365-83849384 Msa0579230:intron 30.0%
TATTAAAAATTGTGGTCCGA+AGG - chr4_1:83849481-83849500 Msa0579230:intron 30.0%
!!! CGTCATTTATTTTTGTACTG+GGG - chr4_1:83849529-83849548 Msa0579230:CDS 30.0%
! TTAATGGAATATGAGGTGTT+TGG - chr4_1:83849936-83849955 Msa0579230:CDS 30.0%
AATTATATGCACTAAGTGGT+CGG + chr4_1:83850090-83850109 None:intergenic 30.0%
!! TTTGGTTGATATTTTCGACC+TGG - chr4_1:83846485-83846504 Msa0579230:three_prime_UTR 35.0%
!! TTGGTTGATATTTTCGACCT+GGG - chr4_1:83846486-83846505 Msa0579230:three_prime_UTR 35.0%
! GATTCTTTTGTCTTCAAGGT+TGG + chr4_1:83846696-83846715 None:intergenic 35.0%
! CATGGATTCTTTTGTCTTCA+AGG + chr4_1:83846700-83846719 None:intergenic 35.0%
CTTGAAGACAAAAGAATCCA+TGG - chr4_1:83846698-83846717 Msa0579230:three_prime_UTR 35.0%
GATAGGGAAAGAAATTGAAC+AGG - chr4_1:83846889-83846908 Msa0579230:three_prime_UTR 35.0%
GAAATTGAACAGGATCTTTC+TGG - chr4_1:83846899-83846918 Msa0579230:three_prime_UTR 35.0%
ATTGGTGAATGGTAAAACCT+CGG + chr4_1:83847145-83847164 None:intergenic 35.0%
! TTGAAAATTTTGTGTCCTGC+AGG - chr4_1:83847207-83847226 Msa0579230:three_prime_UTR 35.0%
! TGAAAATTTTGTGTCCTGCA+GGG - chr4_1:83847208-83847227 Msa0579230:three_prime_UTR 35.0%
CAACTCAATTACACGCTTAT+AGG + chr4_1:83847544-83847563 None:intergenic 35.0%
! ATTGAGTTGCTTATCCAAAG+AGG - chr4_1:83847555-83847574 Msa0579230:three_prime_UTR 35.0%
! TTGAGTTGCTTATCCAAAGA+GGG - chr4_1:83847556-83847575 Msa0579230:three_prime_UTR 35.0%
TTTAGTTGTTGCATGTTACG+GGG + chr4_1:83847849-83847868 None:intergenic 35.0%
GTTTAGTTGTTGCATGTTAC+GGG + chr4_1:83847850-83847869 None:intergenic 35.0%
TGAGATGTTAGATGCATTTG+TGG + chr4_1:83847890-83847909 None:intergenic 35.0%
CAATGTGAATCCATTTGCAA+AGG - chr4_1:83847908-83847927 Msa0579230:CDS 35.0%
CTTTGCAAACTTGCAACAAT+GGG + chr4_1:83848009-83848028 None:intergenic 35.0%
TCTTTGCAAACTTGCAACAA+TGG + chr4_1:83848010-83848029 None:intergenic 35.0%
TTTCAACACACATCATGGTT+GGG + chr4_1:83848034-83848053 None:intergenic 35.0%
ATTTCAACACACATCATGGT+TGG + chr4_1:83848035-83848054 None:intergenic 35.0%
AACCATGATGTGTGTTGAAA+TGG - chr4_1:83848034-83848053 Msa0579230:CDS 35.0%
AATTTAACTAGAGCAGAGGA+TGG + chr4_1:83848098-83848117 None:intergenic 35.0%
GATCAATTTAACTAGAGCAG+AGG + chr4_1:83848102-83848121 None:intergenic 35.0%
CTCTAGTTAAATTGATCCCT+GGG - chr4_1:83848105-83848124 Msa0579230:intron 35.0%
! CATGTCCGTTAATTTTGAAC+TGG - chr4_1:83848137-83848156 Msa0579230:intron 35.0%
GCATCCCAGTTCAAAATTAA+CGG + chr4_1:83848145-83848164 None:intergenic 35.0%
! TAATTTTGAACTGGGATGCT+AGG - chr4_1:83848146-83848165 Msa0579230:intron 35.0%
GACTATCAAATTGACAACCT+TGG - chr4_1:83848414-83848433 Msa0579230:intron 35.0%
GCATTGTTACGTAATAACCA+AGG + chr4_1:83848434-83848453 None:intergenic 35.0%
TTACGTAACAATGCTGTTGT+TGG - chr4_1:83848440-83848459 Msa0579230:intron 35.0%
! AGACCATTATTGGTTGGATA+GGG + chr4_1:83848515-83848534 None:intergenic 35.0%
! AAGACCATTATTGGTTGGAT+AGG + chr4_1:83848516-83848535 None:intergenic 35.0%
ATCCAACCAATAATGGTCTT+TGG - chr4_1:83848516-83848535 Msa0579230:intron 35.0%
AACCAAAGACCATTATTGGT+TGG + chr4_1:83848521-83848540 None:intergenic 35.0%
GCAAAACCAAAGACCATTAT+TGG + chr4_1:83848525-83848544 None:intergenic 35.0%
GATTTACCTATAGACGTTCT+TGG - chr4_1:83848760-83848779 Msa0579230:intron 35.0%
AAACATCACATGGATAGTGT+AGG + chr4_1:83849210-83849229 None:intergenic 35.0%
CTTATCTGTGTAAAATCACG+AGG - chr4_1:83849316-83849335 Msa0579230:intron 35.0%
!!! ACGAGGACAAGTTTTAGATT+AGG - chr4_1:83849333-83849352 Msa0579230:intron 35.0%
TGATTAAGAGTTGCTTGAGA+TGG - chr4_1:83849708-83849727 Msa0579230:intron 35.0%
GCTTGAGATGGATAATTGTT+CGG - chr4_1:83849720-83849739 Msa0579230:intron 35.0%
TCTACTTCTGTCTATGTTTC+AGG - chr4_1:83849856-83849875 Msa0579230:CDS 35.0%
CTACTTCTGTCTATGTTTCA+GGG - chr4_1:83849857-83849876 Msa0579230:CDS 35.0%
TGTCTATGTTTCAGGGTATA+TGG - chr4_1:83849864-83849883 Msa0579230:CDS 35.0%
GTCACTCTTAATGGAATATG+AGG - chr4_1:83849929-83849948 Msa0579230:CDS 35.0%
AGCTATAAGTTCCGAAATGA+AGG + chr4_1:83849981-83850000 None:intergenic 35.0%
TTCATTTCGGAACTTATAGC+TGG - chr4_1:83849980-83849999 Msa0579230:intron 35.0%
! TTGATATTTTCGACCTGGGT+GGG - chr4_1:83846490-83846509 Msa0579230:three_prime_UTR 40.0%
! TTTCCTTCTAGGAAACATGC+AGG - chr4_1:83846620-83846639 Msa0579230:three_prime_UTR 40.0%
ATTGTGAGATTGAGATTGGG+AGG + chr4_1:83846810-83846829 None:intergenic 40.0%
GATCTTTCTGGATTCAAGTG+CGG - chr4_1:83846911-83846930 Msa0579230:three_prime_UTR 40.0%
TTGGTGAATGGTAAAACCTC+GGG + chr4_1:83847144-83847163 None:intergenic 40.0%
! GAAAATTTTGTGTCCTGCAG+GGG - chr4_1:83847209-83847228 Msa0579230:three_prime_UTR 40.0%
TTAAGGAGTAGGAGCAAGTT+TGG - chr4_1:83847322-83847341 Msa0579230:three_prime_UTR 40.0%
CAAATGATAGAGGCTTTCTG+TGG + chr4_1:83847663-83847682 None:intergenic 40.0%
TAATCAGTTAGTTAGTGCGC+TGG - chr4_1:83847743-83847762 Msa0579230:three_prime_UTR 40.0%
TGTGAATCCATTTGCAAAGG+AGG - chr4_1:83847911-83847930 Msa0579230:CDS 40.0%
GTGAATCCATTTGCAAAGGA+GGG - chr4_1:83847912-83847931 Msa0579230:CDS 40.0%
TGAATCCATTTGCAAAGGAG+GGG - chr4_1:83847913-83847932 Msa0579230:CDS 40.0%
! TGCCATTTCAACACACATCA+TGG + chr4_1:83848039-83848058 None:intergenic 40.0%
AGTTGAATTGAGCTCCAATG+AGG - chr4_1:83848059-83848078 Msa0579230:CDS 40.0%
GCTCTAGTTAAATTGATCCC+TGG - chr4_1:83848104-83848123 Msa0579230:intron 40.0%
AGATTACACTAGACCAAACC+AGG + chr4_1:83848173-83848192 None:intergenic 40.0%
CGTGGTATCCAATTTGTGTT+TGG - chr4_1:83848294-83848313 Msa0579230:intron 40.0%
GAGTTTACAAATCGAGCCTA+CGG - chr4_1:83848371-83848390 Msa0579230:intron 40.0%
TAAACTGGTGAAATCTCCGT+AGG + chr4_1:83848390-83848409 None:intergenic 40.0%
TGGAACATACAACAGATTGG+GGG + chr4_1:83848492-83848511 None:intergenic 40.0%
GTGGAACATACAACAGATTG+GGG + chr4_1:83848493-83848512 None:intergenic 40.0%
GGTGGAACATACAACAGATT+GGG + chr4_1:83848494-83848513 None:intergenic 40.0%
TTTATGCGCATGTACGTTCA+AGG - chr4_1:83848954-83848973 Msa0579230:intron 40.0%
ACAGCACTACATGTCAAGAT+TGG - chr4_1:83849175-83849194 Msa0579230:intron 40.0%
ATCACATGGATAGTGTAGGA+AGG + chr4_1:83849206-83849225 None:intergenic 40.0%
AGTGGTTGAGAAACATCACA+TGG + chr4_1:83849220-83849239 None:intergenic 40.0%
ATCAGCTCTTCTTAGATACG+AGG + chr4_1:83849391-83849410 None:intergenic 40.0%
TCGTATCTAAGAAGAGCTGA+TGG - chr4_1:83849390-83849409 Msa0579230:intron 40.0%
CTTGTCCACAATGTAGGTAA+TGG - chr4_1:83849436-83849455 Msa0579230:intron 40.0%
AACTGCCATTACCTACATTG+TGG + chr4_1:83849444-83849463 None:intergenic 40.0%
CAGTAGTGCAATCATTTGCA+AGG + chr4_1:83849751-83849770 None:intergenic 40.0%
AGAGTGGTTGTCACTCTTAA+TGG - chr4_1:83849920-83849939 Msa0579230:CDS 40.0%
! GCTTTGATTCGCCTTCATTT+CGG - chr4_1:83849967-83849986 Msa0579230:CDS 40.0%
CACAGTTGCATTGCATTCAT+AGG + chr4_1:83850058-83850077 None:intergenic 40.0%
! GTTGATATTTTCGACCTGGG+TGG - chr4_1:83846489-83846508 Msa0579230:three_prime_UTR 45.0%
ACACCTGCATGTTTCCTAGA+AGG + chr4_1:83846626-83846645 None:intergenic 45.0%
! ATGGTTTTCTGGGCCCATTT+GGG + chr4_1:83846738-83846757 None:intergenic 45.0%
! TGGTAGAGCGATGGTTTTCT+GGG + chr4_1:83846748-83846767 None:intergenic 45.0%
TTTGTAAGGTGGTAGAGCGA+TGG + chr4_1:83846757-83846776 None:intergenic 45.0%
CTGTCATCTTGTTACTCCCA+AGG - chr4_1:83846782-83846801 Msa0579230:three_prime_UTR 45.0%
TTGAGATTGGGAGGAACCTT+GGG + chr4_1:83846801-83846820 None:intergenic 45.0%
ATTGAGATTGGGAGGAACCT+TGG + chr4_1:83846802-83846821 None:intergenic 45.0%
TTGCTTATCCAAAGAGGGTC+TGG - chr4_1:83847561-83847580 Msa0579230:three_prime_UTR 45.0%
AGCTCATTCATGAGCTAAGG+AGG + chr4_1:83847786-83847805 None:intergenic 45.0%
GGTAGCTCATTCATGAGCTA+AGG + chr4_1:83847789-83847808 None:intergenic 45.0%
TGAGCTCCAATGAGGAAAGT+CGG - chr4_1:83848067-83848086 Msa0579230:intron 45.0%
TAACTAGAGCAGAGGATGGT+GGG + chr4_1:83848094-83848113 None:intergenic 45.0%
TTAACTAGAGCAGAGGATGG+TGG + chr4_1:83848095-83848114 None:intergenic 45.0%
GGACATGTTTACGAATCCCA+GGG + chr4_1:83848124-83848143 None:intergenic 45.0%
GGGTGGAACATACAACAGAT+TGG + chr4_1:83848495-83848514 None:intergenic 45.0%
! CCATTATTGGTTGGATAGGG+TGG + chr4_1:83848512-83848531 None:intergenic 45.0%
CCACCCTATCCAACCAATAA+TGG - chr4_1:83848509-83848528 Msa0579230:intron 45.0%
TGTAGGTCATGATGACATGC+CGG - chr4_1:83848550-83848569 Msa0579230:intron 45.0%
GAAAGCTTAACATGGGAACC+TGG - chr4_1:83848713-83848732 Msa0579230:intron 45.0%
AGTAAACGATGTTACCTGCC+AGG + chr4_1:83848734-83848753 None:intergenic 45.0%
GCTTGACCAAGAACGTCTAT+AGG + chr4_1:83848769-83848788 None:intergenic 45.0%
GCATTGCTTGTCCACAATGT+AGG - chr4_1:83849430-83849449 Msa0579230:intron 45.0%
!! GTATATGGCTTTGTGAGCAC+CGG - chr4_1:83849879-83849898 Msa0579230:CDS 45.0%
!! TATATGGCTTTGTGAGCACC+GGG - chr4_1:83849880-83849899 Msa0579230:CDS 45.0%
!!! TTTATTTTTATAAATAAACA+CGG + chr4_1:83849624-83849643 None:intergenic 5.0%
! GCAAGTGCTACTCACACGTT+TGG + chr4_1:83846454-83846473 None:intergenic 50.0%
AACTTAAGTGACACCCACCC+AGG + chr4_1:83846506-83846525 None:intergenic 50.0%
TGCTGCGCTTTCACGCTTAA+TGG + chr4_1:83846672-83846691 None:intergenic 50.0%
TGAATCCACCGCTCCCAAAT+GGG - chr4_1:83846722-83846741 Msa0579230:three_prime_UTR 50.0%
! GATGGTTTTCTGGGCCCATT+TGG + chr4_1:83846739-83846758 None:intergenic 50.0%
! GTGGTAGAGCGATGGTTTTC+TGG + chr4_1:83846749-83846768 None:intergenic 50.0%
GCTCTACCACCTTACAAACG+CGG - chr4_1:83846759-83846778 Msa0579230:three_prime_UTR 50.0%
AGATGACAGCCGCGTTTGTA+AGG + chr4_1:83846771-83846790 None:intergenic 50.0%
CCTCGGGAACAATTCGATTG+AGG + chr4_1:83847128-83847147 None:intergenic 50.0%
CCTCAATCGAATTGTTCCCG+AGG - chr4_1:83847125-83847144 Msa0579230:three_prime_UTR 50.0%
! ACCTTGGAAGCACACTCTAG+AGG - chr4_1:83847240-83847259 Msa0579230:three_prime_UTR 50.0%
! CCTTGGAAGCACACTCTAGA+GGG - chr4_1:83847241-83847260 Msa0579230:three_prime_UTR 50.0%
GTGTTCCCCTCCTTTGCAAA+TGG + chr4_1:83847921-83847940 None:intergenic 50.0%
CGGACATGTTTACGAATCCC+AGG + chr4_1:83848125-83848144 None:intergenic 50.0%
TCAAGTGCCCGTGTGATGTA+AGG + chr4_1:83849281-83849300 None:intergenic 50.0%
TTCGTGAGGTAGGATGATCC+CGG + chr4_1:83849901-83849920 None:intergenic 50.0%
TCATCCTACCTCACGAAGAG+TGG - chr4_1:83849904-83849923 Msa0579230:CDS 50.0%
ACAACCACTCTTCGTGAGGT+AGG + chr4_1:83849911-83849930 None:intergenic 50.0%
AGTGACAACCACTCTTCGTG+AGG + chr4_1:83849915-83849934 None:intergenic 50.0%
!! CACTTGCTGCCCAGTCGTTT+TGG - chr4_1:83846467-83846486 Msa0579230:three_prime_UTR 55.0%
CTGAATCCACCGCTCCCAAA+TGG - chr4_1:83846721-83846740 Msa0579230:three_prime_UTR 55.0%
TTTCTGGGCCCATTTGGGAG+CGG + chr4_1:83846733-83846752 None:intergenic 55.0%
TGACAGCCGCGTTTGTAAGG+TGG + chr4_1:83846768-83846787 None:intergenic 55.0%
GTGTGCTTCCAAGGTGCAGA+TGG + chr4_1:83847235-83847254 None:intergenic 55.0%
!! CCCTCTAGAGTGTGCTTCCA+AGG + chr4_1:83847244-83847263 None:intergenic 55.0%
GGCTAGATCCAGACCCTCTT+TGG + chr4_1:83847572-83847591 None:intergenic 55.0%
! GTGGGACCGACTTTCCTCAT+TGG + chr4_1:83848076-83848095 None:intergenic 55.0%
TGAACTGGGATGCTAGGTCC+TGG - chr4_1:83848152-83848171 Msa0579230:intron 55.0%
TGGGATGCTAGGTCCTGGTT+TGG - chr4_1:83848157-83848176 Msa0579230:intron 55.0%
GCTTAACATGGGAACCTGGC+AGG - chr4_1:83848717-83848736 Msa0579230:intron 55.0%
! GGGAGCGGTGGATTCAGCCA+TGG + chr4_1:83846718-83846737 None:intergenic 65.0%
AAGGTGCAGATGGCCCCTGC+AGG + chr4_1:83847225-83847244 None:intergenic 65.0%
TGCAGGGGCCATCTGCACCT+TGG - chr4_1:83847224-83847243 Msa0579230:three_prime_UTR 65.0%
CTGGGCCCATTTGGGAGCGG+TGG + chr4_1:83846730-83846749 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83846426 83850207 83846426 ID=Msa0579230;Name=Msa0579230
chr4_1 mRNA 83846426 83850207 83846426 ID=Msa0579230-mRNA-1;Parent=Msa0579230;Name=Msa0579230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.6|0.5|1|1|1|6|1412|157
chr4_1 exon 83846426 83847937 83846426 ID=Msa0579230-mRNA-1:exon:30661;Parent=Msa0579230-mRNA-1
chr4_1 exon 83848024 83848078 83848024 ID=Msa0579230-mRNA-1:exon:30660;Parent=Msa0579230-mRNA-1
chr4_1 exon 83849371 83849404 83849371 ID=Msa0579230-mRNA-1:exon:30659;Parent=Msa0579230-mRNA-1
chr4_1 exon 83849487 83849576 83849487 ID=Msa0579230-mRNA-1:exon:30658;Parent=Msa0579230-mRNA-1
chr4_1 exon 83849830 83849991 83849830 ID=Msa0579230-mRNA-1:exon:30657;Parent=Msa0579230-mRNA-1
chr4_1 exon 83850175 83850207 83850175 ID=Msa0579230-mRNA-1:exon:30656;Parent=Msa0579230-mRNA-1
chr4_1 CDS 83850175 83850207 83850175 ID=Msa0579230-mRNA-1:cds;Parent=Msa0579230-mRNA-1
chr4_1 CDS 83849830 83849991 83849830 ID=Msa0579230-mRNA-1:cds;Parent=Msa0579230-mRNA-1
chr4_1 CDS 83849487 83849576 83849487 ID=Msa0579230-mRNA-1:cds;Parent=Msa0579230-mRNA-1
chr4_1 CDS 83849371 83849404 83849371 ID=Msa0579230-mRNA-1:cds;Parent=Msa0579230-mRNA-1
chr4_1 CDS 83848024 83848078 83848024 ID=Msa0579230-mRNA-1:cds;Parent=Msa0579230-mRNA-1
chr4_1 CDS 83847838 83847937 83847838 ID=Msa0579230-mRNA-1:cds;Parent=Msa0579230-mRNA-1
chr4_1 three_prime_UTR 83846426 83847837 83846426 ID=Msa0579230-mRNA-1:three_prime_utr;Parent=Msa0579230-mRNA-1
Gene Sequence

>Msa0579230

ATGGAGATGGGTGTGGAAAGCATAACCAAACGTGTGTCATCACTGTGCGTAGCAAAGTTTCCATTAAGCGTGAAAGCGCAGCACCCAACCTTGAAGACAAAAGAATCCATGGCTGAATCCACCGCTCCCAAATGGGCCCAGAAAACCATCGCTCTACCACCTTACAAACGCGGCTGTCATCTTGTTACTCCCAAGCATACAAGTGCTTCTCTTACTATCAATGAAAATTATGACACTGATGTTCGCGATGATACCGAAACATTCCTCAATCGAATTGTTCCCGAGGGGCCATCTGCACCTTGGAAGCACACTCTAGAGGGTCATGATGACATGCCGGCTCATATTAAGTCATCAATGTTTGGCTGTGCACTCACGATACCAATTACAAATGGAAAGCTTAACATGGGAACCTGGCAGGTAACATCGTTTACTTCTAATGATTTACCTATAGACGTTCTTGGTCAAGCATGTTGA

Protein sequence

>Msa0579230

MEMGVESITKRVSSLCVAKFPLSVKAQHPTLKTKESMAESTAPKWAQKTIALPPYKRGCHLVTPKHTSASLTINENYDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITNGKLNMGTWQVTSFTSNDLPIDVLGQAC*