AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0579170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579170 MtrunA17_Chr4g0043721 83.019 159 3 2 3 139 1 157 1.16e-89 259
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0579170 AT1G21065.1 67.188 128 20 1 34 139 67 194 1.98e-56 176

Find 86 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTCTGTCTATGTTTC+AGG 0.081428 4_1:-83800421 Msa0579170:three_prime_UTR
TGCTGCGCTTTCACGCTTAA+TGG 0.223647 4_1:+83803597 None:intergenic
ACTCAGATTACATTGTAAAA+AGG 0.228703 4_1:+83800250 None:intergenic
TGTCTATGTTTCAGGGTATA+TGG 0.238559 4_1:-83800413 Msa0579170:three_prime_UTR
TTAAGCTTTCCATTTGTAAT+TGG 0.251097 4_1:+83801574 None:intergenic
GTCGGAAAATGATTAATAAT+TGG 0.260517 4_1:+83801397 None:intergenic
GATTTACCTATAGACGTTCT+TGG 0.290255 4_1:-83801514 Msa0579170:CDS
AAATAAAATGACTAATGATT+TGG 0.299561 4_1:+83800164 None:intergenic
AGAGTGGTTGTCACTCTTAA+TGG 0.316738 4_1:-83800357 Msa0579170:three_prime_UTR
TCTACCAATCACTAAATATA+TGG 0.332464 4_1:+83801228 None:intergenic
CTGAATCCACCGCTCCCAAA+TGG 0.374424 4_1:-83803545 Msa0579170:CDS
CTACTTCTGTCTATGTTTCA+GGG 0.376327 4_1:-83800420 Msa0579170:three_prime_UTR
CATATTAAGTCATCAATGTT+TGG 0.383226 4_1:-83801699 Msa0579170:CDS
CACAGTTGCATTGCATTCAT+AGG 0.389222 4_1:+83800222 None:intergenic
AATGCCATATATTTAGTGAT+TGG 0.395233 4_1:-83801232 Msa0579170:three_prime_UTR
AATTCGATTGAGGAATGTTT+CGG 0.407385 4_1:+83803157 None:intergenic
GCTTTGATTCGCCTTCATTT+CGG 0.408180 4_1:-83800310 Msa0579170:three_prime_UTR
TTAATGGAATATGAGGTGTT+TGG 0.431682 4_1:-83800341 Msa0579170:three_prime_UTR
TTCATTTCGGAACTTATAGC+TGG 0.432935 4_1:-83800297 Msa0579170:three_prime_UTR
TTTATGCGCATGTACGTTCA+AGG 0.440887 4_1:-83801320 Msa0579170:three_prime_UTR
TTCAGGATACCAATTACAAA+TGG 0.444301 4_1:-83801583 Msa0579170:intron
CATAAGGATAAACTTTATTG+AGG 0.447853 4_1:+83800719 None:intergenic
GTAGATATGTTTCAAACCAT+TGG 0.448097 4_1:-83801210 Msa0579170:three_prime_UTR
GCTTGAGATGGATAATTGTT+CGG 0.449523 4_1:-83800557 Msa0579170:three_prime_UTR
GTCACTCTTAATGGAATATG+AGG 0.455709 4_1:-83800348 Msa0579170:three_prime_UTR
GCTTGACCAAGAACGTCTAT+AGG 0.458750 4_1:+83801508 None:intergenic
AGATGACAGCCGCGTTTGTA+AGG 0.461854 4_1:+83803498 None:intergenic
TCAAGTGCCCGTGTGATGTA+AGG 0.469687 4_1:+83800997 None:intergenic
GCAAGTGCTACTCACACGTT+TGG 0.472072 4_1:+83803815 None:intergenic
TGCAGGGGCCATCTGCACCT+TGG 0.473611 4_1:-83803048 Msa0579170:intron
CCCTCTAGAGTGTGCTTCCA+AGG 0.475370 4_1:+83803031 None:intergenic
TGAATCCACCGCTCCCAAAT+GGG 0.475393 4_1:-83803544 Msa0579170:CDS
GCATTGCTTGTCCACAATGT+AGG 0.482245 4_1:-83800845 Msa0579170:three_prime_UTR
AGCTATAAGTTCCGAAATGA+AGG 0.482886 4_1:+83800299 None:intergenic
ATGGCATTAATGAGGAATTA+CGG 0.486763 4_1:+83801247 None:intergenic
GAAAATGATTAATAATTGGT+AGG 0.499509 4_1:+83801401 None:intergenic
CTGTCATCTTGTTACTCCCA+AGG 0.510680 4_1:-83803484 Msa0579170:intron
CTTGTCCACAATGTAGGTAA+TGG 0.514655 4_1:-83800839 Msa0579170:three_prime_UTR
ACTATTGAATTTGAGTATGT+TGG 0.516726 4_1:-83801451 Msa0579170:three_prime_UTR
AAATGTGTGAAATGCAAAAG+TGG 0.520631 4_1:+83801040 None:intergenic
GCTTAACATGGGAACCTGGC+AGG 0.523728 4_1:-83801557 Msa0579170:CDS
GTATATGGCTTTGTGAGCAC+CGG 0.524933 4_1:-83800398 Msa0579170:three_prime_UTR
TACTAACAACATTACATTGG+TGG 0.525839 4_1:-83800910 Msa0579170:three_prime_UTR
CTGGGCCCATTTGGGAGCGG+TGG 0.526538 4_1:+83803539 None:intergenic
GAAAGCTTAACATGGGAACC+TGG 0.533663 4_1:-83801561 Msa0579170:CDS
TTTATATTGTCAGATGGAGA+TGG 0.537561 4_1:-83803853 None:intergenic
AGTAAACGATGTTACCTGCC+AGG 0.545004 4_1:+83801543 None:intergenic
TTTCTGGGCCCATTTGGGAG+CGG 0.545582 4_1:+83803536 None:intergenic
ACAGCACTACATGTCAAGAT+TGG 0.546298 4_1:-83801100 Msa0579170:three_prime_UTR
TTGTCAGATGGAGATGGGTG+TGG 0.547361 4_1:-83803847 None:intergenic
ATTGATGACTTAATATGAGC+CGG 0.551506 4_1:+83801705 None:intergenic
GAATAATTATATGCACTAAG+TGG 0.552789 4_1:+83800186 None:intergenic
AACAGTGTATTGTATACCAA+TGG 0.553581 4_1:+83801194 None:intergenic
GTGTGCTTCCAAGGTGCAGA+TGG 0.554212 4_1:+83803040 None:intergenic
TGATTAAGAGTTGCTTGAGA+TGG 0.554442 4_1:-83800569 Msa0579170:three_prime_UTR
CTTGAAGACAAAAGAATCCA+TGG 0.555822 4_1:-83803568 Msa0579170:CDS
TTATATTGTCAGATGGAGAT+GGG 0.562843 4_1:-83803852 None:intergenic
CCTCGGGAACAATTCGATTG+AGG 0.564302 4_1:+83803147 None:intergenic
CCTTGGAAGCACACTCTAGA+GGG 0.564381 4_1:-83803031 Msa0579170:intron
TCGTATCTAAGAAGAGCTGA+TGG 0.571475 4_1:-83800885 Msa0579170:three_prime_UTR
ATTAAATTCCTTACATCACA+CGG 0.578972 4_1:-83801005 Msa0579170:three_prime_UTR
TGTAGGTCATGATGACATGC+CGG 0.579488 4_1:-83801724 Msa0579170:intron
CTAAATATATGGCATTAATG+AGG 0.582997 4_1:+83801239 None:intergenic
AATTATATGCACTAAGTGGT+CGG 0.589344 4_1:+83800190 None:intergenic
TTTGTAAGGTGGTAGAGCGA+TGG 0.592048 4_1:+83803512 None:intergenic
GGGAGCGGTGGATTCAGCCA+TGG 0.593135 4_1:+83803551 None:intergenic
TACAAATGGAAAGCTTAACA+TGG 0.595390 4_1:-83801569 Msa0579170:CDS
ACAACCACTCTTCGTGAGGT+AGG 0.608382 4_1:+83800369 None:intergenic
AACTGCCATTACCTACATTG+TGG 0.608606 4_1:+83800834 None:intergenic
AAACATCACATGGATAGTGT+AGG 0.611589 4_1:+83801068 None:intergenic
TGACAGCCGCGTTTGTAAGG+TGG 0.611847 4_1:+83803501 None:intergenic
CAGTAGTGCAATCATTTGCA+AGG 0.614160 4_1:+83800529 None:intergenic
TCATCCTACCTCACGAAGAG+TGG 0.624302 4_1:-83800373 Msa0579170:three_prime_UTR
TTCGTGAGGTAGGATGATCC+CGG 0.626171 4_1:+83800379 None:intergenic
TATATGGCTTTGTGAGCACC+GGG 0.627807 4_1:-83800397 Msa0579170:three_prime_UTR
CCTCAATCGAATTGTTCCCG+AGG 0.630614 4_1:-83803147 Msa0579170:intron
ACCTTGGAAGCACACTCTAG+AGG 0.633350 4_1:-83803032 Msa0579170:CDS
ATCAGCTCTTCTTAGATACG+AGG 0.635175 4_1:+83800887 None:intergenic
ATCACATGGATAGTGTAGGA+AGG 0.647422 4_1:+83801072 None:intergenic
ACAAATGGAAAGCTTAACAT+GGG 0.648618 4_1:-83801568 Msa0579170:CDS
TGCTACTAACAACATTACAT+TGG 0.650670 4_1:-83800913 Msa0579170:three_prime_UTR
CTTATCTGTGTAAAATCACG+AGG 0.652210 4_1:-83800959 Msa0579170:three_prime_UTR
TTAAATTCCTTACATCACAC+GGG 0.668503 4_1:-83801004 Msa0579170:three_prime_UTR
AGTGGTTGAGAAACATCACA+TGG 0.686200 4_1:+83801058 None:intergenic
AGTGACAACCACTCTTCGTG+AGG 0.692534 4_1:+83800365 None:intergenic
GCTCTACCACCTTACAAACG+CGG 0.803139 4_1:-83803507 Msa0579170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATTTTATAATGT+TGG - chr4_1:83803335-83803354 Msa0579170:intron 10.0%
!! AAGTAAATGAAAAATGAAAT+GGG + chr4_1:83800504-83800523 None:intergenic 15.0%
!! TAAGTAAATGAAAAATGAAA+TGG + chr4_1:83800505-83800524 None:intergenic 15.0%
!! ATGAATGAATAAACAAATAT+TGG + chr4_1:83800823-83800842 None:intergenic 15.0%
!! CTAAAACTTTAAATATGATA+AGG - chr4_1:83800964-83800983 Msa0579170:three_prime_UTR 15.0%
!! TATAACAAAAGAAAAAACAA+AGG + chr4_1:83801133-83801152 None:intergenic 15.0%
!!! TTTCTTTTTGTAAAATAACA+AGG + chr4_1:83802797-83802816 None:intergenic 15.0%
!!! AATTTGCTTATTAAAAATTG+TGG - chr4_1:83803130-83803149 Msa0579170:intron 15.0%
!!! AATGTGTTTTTTTATTCATA+AGG + chr4_1:83803232-83803251 None:intergenic 15.0%
!! AAATAAAATGACTAATGATT+TGG + chr4_1:83803771-83803790 None:intergenic 15.0%
!!! ATCTTTTTTTTTTTCCTTCT+AGG - chr4_1:83800275-83800294 Msa0579170:three_prime_UTR 20.0%
!! AGTAAATGAAAAATGAAATG+GGG + chr4_1:83800503-83800522 None:intergenic 20.0%
!! AATAAACAAATATTGGTGAA+TGG + chr4_1:83800816-83800835 None:intergenic 20.0%
!! TAGTTTATAGTAGGTATAAT+GGG + chr4_1:83801622-83801641 None:intergenic 20.0%
!! ATAGTTTATAGTAGGTATAA+TGG + chr4_1:83801623-83801642 None:intergenic 20.0%
!! ACTTCATTATAGTTTATAGT+AGG + chr4_1:83801631-83801650 None:intergenic 20.0%
!! AAATATTTAGATTCTGTTCT+TGG - chr4_1:83801888-83801907 Msa0579170:intron 20.0%
!! AATATTTAGATTCTGTTCTT+GGG - chr4_1:83801889-83801908 Msa0579170:intron 20.0%
!! AAGCAAAAAAATGCTTAAAA+TGG + chr4_1:83801990-83802009 None:intergenic 20.0%
!!! AATTCAATAGTAACTTTTGT+GGG + chr4_1:83802472-83802491 None:intergenic 20.0%
!!! AAATTCAATAGTAACTTTTG+TGG + chr4_1:83802473-83802492 None:intergenic 20.0%
!! GAAAATGATTAATAATTGGT+AGG + chr4_1:83802534-83802553 None:intergenic 20.0%
!!! GATTTTTATAAGAATTTGGT+CGG + chr4_1:83802556-83802575 None:intergenic 20.0%
!!! TCGTGATTTTTATAAGAATT+TGG + chr4_1:83802560-83802579 None:intergenic 20.0%
! AAAATTGTGAGATTGAGATT+GGG + chr4_1:83800479-83800498 None:intergenic 25.0%
! GTAAATGAAAAATGAAATGG+GGG + chr4_1:83800502-83800521 None:intergenic 25.0%
! CTTTAAATATGATAAGGAGT+AGG - chr4_1:83800970-83800989 Msa0579170:three_prime_UTR 25.0%
! AAAAGAAAAAACAAAGGCAA+AGG + chr4_1:83801127-83801146 None:intergenic 25.0%
! ATAAACGCTAATCATATAAG+TGG + chr4_1:83801180-83801199 None:intergenic 25.0%
! TCTTGTATATAACATTGCTT+CGG - chr4_1:83801468-83801487 Msa0579170:three_prime_UTR 25.0%
!! TCCATCTCAGTTTAATTTAT+TGG - chr4_1:83801856-83801875 Msa0579170:intron 25.0%
! ACCAATAAATTAAACTGAGA+TGG + chr4_1:83801860-83801879 None:intergenic 25.0%
! ATATTTAGATTCTGTTCTTG+GGG - chr4_1:83801890-83801909 Msa0579170:intron 25.0%
! CTTAATATCCAAACACAAAT+TGG + chr4_1:83801963-83801982 None:intergenic 25.0%
!! ATTTGATAGTCTAAGTAAAC+TGG + chr4_1:83802063-83802082 None:intergenic 25.0%
! GAAAACACGTAAATTATACT+TGG + chr4_1:83802128-83802147 None:intergenic 25.0%
! CATATTAAGTCATCAATGTT+TGG - chr4_1:83802233-83802252 Msa0579170:intron 25.0%
! TTAAGCTTTCCATTTGTAAT+TGG + chr4_1:83802361-83802380 None:intergenic 25.0%
! ACTATTGAATTTGAGTATGT+TGG - chr4_1:83802481-83802500 Msa0579170:intron 25.0%
! GTCGGAAAATGATTAATAAT+TGG + chr4_1:83802538-83802557 None:intergenic 25.0%
!!! GTCATTGATTTTTTTACTCT+GGG + chr4_1:83802583-83802602 None:intergenic 25.0%
!!! AGTCATTGATTTTTTTACTC+TGG + chr4_1:83802584-83802603 None:intergenic 25.0%
! GAGTAAAAAAATCAATGACT+AGG - chr4_1:83802584-83802603 Msa0579170:intron 25.0%
! CTAAATATATGGCATTAATG+AGG + chr4_1:83802696-83802715 None:intergenic 25.0%
! AATGCCATATATTTAGTGAT+TGG - chr4_1:83802700-83802719 Msa0579170:intron 25.0%
! TCTACCAATCACTAAATATA+TGG + chr4_1:83802707-83802726 None:intergenic 25.0%
! ATTAAATTCCTTACATCACA+CGG - chr4_1:83802927-83802946 Msa0579170:intron 25.0%
!!! GATGGAAAACTTATTTTCTT+AGG - chr4_1:83803065-83803084 Msa0579170:intron 25.0%
!! TAAATTTTCTTCAAAGCCTT+CGG + chr4_1:83803157-83803176 None:intergenic 25.0%
!!! AACGTCATTTATTTTTGTAC+TGG - chr4_1:83803184-83803203 Msa0579170:CDS 25.0%
!!! ACGTCATTTATTTTTGTACT+GGG - chr4_1:83803185-83803204 Msa0579170:CDS 25.0%
! CATAAGGATAAACTTTATTG+AGG + chr4_1:83803216-83803235 None:intergenic 25.0%
! CTCAGATTACATTGTAAAAA+GGG + chr4_1:83803684-83803703 None:intergenic 25.0%
! ACTCAGATTACATTGTAAAA+AGG + chr4_1:83803685-83803704 None:intergenic 25.0%
! GAATAATTATATGCACTAAG+TGG + chr4_1:83803749-83803768 None:intergenic 25.0%
AAATATCAACCAAAACGACT+GGG + chr4_1:83800145-83800164 None:intergenic 30.0%
AAAATATCAACCAAAACGAC+TGG + chr4_1:83800146-83800165 None:intergenic 30.0%
! ATTCTTTTGTCTTCAAGGTT+GGG + chr4_1:83800361-83800380 None:intergenic 30.0%
GAAAATTGTGAGATTGAGAT+TGG + chr4_1:83800480-83800499 None:intergenic 30.0%
TATATACTCACAGAAGAGAT+GGG + chr4_1:83800602-83800621 None:intergenic 30.0%
ATATATACTCACAGAAGAGA+TGG + chr4_1:83800603-83800622 None:intergenic 30.0%
AATTTGTGCTGAAATGAAGT+TGG - chr4_1:83800679-83800698 Msa0579170:three_prime_UTR 30.0%
AATTCGATTGAGGAATGTTT+CGG + chr4_1:83800778-83800797 None:intergenic 30.0%
! GTAGTTTTTGTAAGCTATCA+TGG + chr4_1:83801086-83801105 None:intergenic 30.0%
AAGAGAAAATTGCATTACTG+AGG + chr4_1:83801252-83801271 None:intergenic 30.0%
AATGGTTCTTCAAATGATAG+AGG + chr4_1:83801332-83801351 None:intergenic 30.0%
TTACAATCAGAGTATGTGAA+TGG + chr4_1:83801350-83801369 None:intergenic 30.0%
GAAGCAATGTTATATACAAG+AGG + chr4_1:83801469-83801488 None:intergenic 30.0%
TGTTTAGTTGTTGCATGTTA+CGG + chr4_1:83801510-83801529 None:intergenic 30.0%
! ATGTCCGTTAATTTTGAACT+GGG - chr4_1:83801796-83801815 Msa0579170:intron 30.0%
! CTTATTATGTAATTTGCACG+TGG - chr4_1:83801934-83801953 Msa0579170:intron 30.0%
!!! CTTTGGTTTTGCAATTTTGT+AGG - chr4_1:83802191-83802210 Msa0579170:intron 30.0%
! ATTGATGACTTAATATGAGC+CGG + chr4_1:83802230-83802249 None:intergenic 30.0%
TGAAAATACAAGACATCAGT+AGG + chr4_1:83802333-83802352 None:intergenic 30.0%
! TACTGATGTCTTGTATTTTC+AGG - chr4_1:83802332-83802351 Msa0579170:intron 30.0%
TTCAGGATACCAATTACAAA+TGG - chr4_1:83802349-83802368 Msa0579170:intron 30.0%
TACAAATGGAAAGCTTAACA+TGG - chr4_1:83802363-83802382 Msa0579170:intron 30.0%
ACAAATGGAAAGCTTAACAT+GGG - chr4_1:83802364-83802383 Msa0579170:intron 30.0%
! TTGAACATATGTTTTCAGTG+TGG - chr4_1:83802637-83802656 Msa0579170:intron 30.0%
! TGAACATATGTTTTCAGTGT+GGG - chr4_1:83802638-83802657 Msa0579170:intron 30.0%
ATGGCATTAATGAGGAATTA+CGG + chr4_1:83802688-83802707 None:intergenic 30.0%
GTAGATATGTTTCAAACCAT+TGG - chr4_1:83802722-83802741 Msa0579170:intron 30.0%
AACAGTGTATTGTATACCAA+TGG + chr4_1:83802741-83802760 None:intergenic 30.0%
AAATGTGTGAAATGCAAAAG+TGG + chr4_1:83802895-83802914 None:intergenic 30.0%
! GCATTTCACACATTTTTACT+TGG - chr4_1:83802900-83802919 Msa0579170:intron 30.0%
TTAAATTCCTTACATCACAC+GGG - chr4_1:83802928-83802947 Msa0579170:intron 30.0%
TGCTACTAACAACATTACAT+TGG - chr4_1:83803019-83803038 Msa0579170:intron 30.0%
TACTAACAACATTACATTGG+TGG - chr4_1:83803022-83803041 Msa0579170:intron 30.0%
TATTAAAAATTGTGGTCCGA+AGG - chr4_1:83803138-83803157 Msa0579170:intron 30.0%
!!! CGTCATTTATTTTTGTACTG+GGG - chr4_1:83803186-83803205 Msa0579170:CDS 30.0%
! TTAATGGAATATGAGGTGTT+TGG - chr4_1:83803591-83803610 Msa0579170:CDS 30.0%
AATTATATGCACTAAGTGGT+CGG + chr4_1:83803745-83803764 None:intergenic 30.0%
!! TTTGGTTGATATTTTCGACC+TGG - chr4_1:83800151-83800170 Msa0579170:three_prime_UTR 35.0%
!! TTGGTTGATATTTTCGACCT+GGG - chr4_1:83800152-83800171 Msa0579170:three_prime_UTR 35.0%
! GATTCTTTTGTCTTCAAGGT+TGG + chr4_1:83800362-83800381 None:intergenic 35.0%
! CATGGATTCTTTTGTCTTCA+AGG + chr4_1:83800366-83800385 None:intergenic 35.0%
CTTGAAGACAAAAGAATCCA+TGG - chr4_1:83800364-83800383 Msa0579170:three_prime_UTR 35.0%
! TCTTTCCCTATCTGAAGTTT+GGG + chr4_1:83800541-83800560 None:intergenic 35.0%
! TTCTTTCCCTATCTGAAGTT+TGG + chr4_1:83800542-83800561 None:intergenic 35.0%
GATAGGGAAAGAAATTGAAC+AGG - chr4_1:83800549-83800568 Msa0579170:three_prime_UTR 35.0%
GAAATTGAACAGGATCTTTC+TGG - chr4_1:83800559-83800578 Msa0579170:three_prime_UTR 35.0%
ATTGGTGAATGGTAAAACCT+CGG + chr4_1:83800805-83800824 None:intergenic 35.0%
! TTGAAAATTTTGTGTCCTGC+AGG - chr4_1:83800867-83800886 Msa0579170:three_prime_UTR 35.0%
! TGAAAATTTTGTGTCCTGCA+GGG - chr4_1:83800868-83800887 Msa0579170:three_prime_UTR 35.0%
CAACTCAATTACACGCTTAT+AGG + chr4_1:83801203-83801222 None:intergenic 35.0%
! ATTGAGTTGCTTATCCAAAG+AGG - chr4_1:83801214-83801233 Msa0579170:three_prime_UTR 35.0%
! TTGAGTTGCTTATCCAAAGA+GGG - chr4_1:83801215-83801234 Msa0579170:three_prime_UTR 35.0%
TTTAGTTGTTGCATGTTACG+GGG + chr4_1:83801508-83801527 None:intergenic 35.0%
GTTTAGTTGTTGCATGTTAC+GGG + chr4_1:83801509-83801528 None:intergenic 35.0%
TGAGATGTTAGATGCATTTG+TGG + chr4_1:83801549-83801568 None:intergenic 35.0%
CAATGTGAATCCATTTGCAA+AGG - chr4_1:83801567-83801586 Msa0579170:CDS 35.0%
CTTTGCAAACTTGCAACAAT+GGG + chr4_1:83801668-83801687 None:intergenic 35.0%
TCTTTGCAAACTTGCAACAA+TGG + chr4_1:83801669-83801688 None:intergenic 35.0%
TTTCAACACACATCATGGTT+GGG + chr4_1:83801693-83801712 None:intergenic 35.0%
ATTTCAACACACATCATGGT+TGG + chr4_1:83801694-83801713 None:intergenic 35.0%
AACCATGATGTGTGTTGAAA+TGG - chr4_1:83801693-83801712 Msa0579170:CDS 35.0%
AATTTAACTAGAGCAGAGGA+TGG + chr4_1:83801757-83801776 None:intergenic 35.0%
GATCAATTTAACTAGAGCAG+AGG + chr4_1:83801761-83801780 None:intergenic 35.0%
TGCTCTAGTTAAATTGATCC+TGG - chr4_1:83801762-83801781 Msa0579170:intron 35.0%
GCTCTAGTTAAATTGATCCT+GGG - chr4_1:83801763-83801782 Msa0579170:intron 35.0%
! CATGTCCGTTAATTTTGAAC+TGG - chr4_1:83801795-83801814 Msa0579170:intron 35.0%
GCATCCCAGTTCAAAATTAA+CGG + chr4_1:83801803-83801822 None:intergenic 35.0%
! TAATTTTGAACTGGGATGCT+AGG - chr4_1:83801804-83801823 Msa0579170:intron 35.0%
GACTATCAAATTGACAACCT+TGG - chr4_1:83802072-83802091 Msa0579170:intron 35.0%
GCATTGTTACGTAATAACCA+AGG + chr4_1:83802092-83802111 None:intergenic 35.0%
TTACGTAACAATGCTGTTGT+TGG - chr4_1:83802098-83802117 Msa0579170:intron 35.0%
! AGACCATTATTGGTTGGATA+GGG + chr4_1:83802173-83802192 None:intergenic 35.0%
! AAGACCATTATTGGTTGGAT+AGG + chr4_1:83802174-83802193 None:intergenic 35.0%
ATCCAACCAATAATGGTCTT+TGG - chr4_1:83802174-83802193 Msa0579170:intron 35.0%
AACCAAAGACCATTATTGGT+TGG + chr4_1:83802179-83802198 None:intergenic 35.0%
GCAAAACCAAAGACCATTAT+TGG + chr4_1:83802183-83802202 None:intergenic 35.0%
GATTTACCTATAGACGTTCT+TGG - chr4_1:83802418-83802437 Msa0579170:intron 35.0%
AAACATCACATGGATAGTGT+AGG + chr4_1:83802867-83802886 None:intergenic 35.0%
CTTATCTGTGTAAAATCACG+AGG - chr4_1:83802973-83802992 Msa0579170:intron 35.0%
!!! ACGAGGACAAGTTTTAGATT+AGG - chr4_1:83802990-83803009 Msa0579170:intron 35.0%
TGATTAAGAGTTGCTTGAGA+TGG - chr4_1:83803363-83803382 Msa0579170:intron 35.0%
GCTTGAGATGGATAATTGTT+CGG - chr4_1:83803375-83803394 Msa0579170:intron 35.0%
TCTACTTCTGTCTATGTTTC+AGG - chr4_1:83803511-83803530 Msa0579170:CDS 35.0%
CTACTTCTGTCTATGTTTCA+GGG - chr4_1:83803512-83803531 Msa0579170:CDS 35.0%
TGTCTATGTTTCAGGGTATA+TGG - chr4_1:83803519-83803538 Msa0579170:CDS 35.0%
GTCACTCTTAATGGAATATG+AGG - chr4_1:83803584-83803603 Msa0579170:CDS 35.0%
AGCTATAAGTTCCGAAATGA+AGG + chr4_1:83803636-83803655 None:intergenic 35.0%
TTCATTTCGGAACTTATAGC+TGG - chr4_1:83803635-83803654 Msa0579170:intron 35.0%
! TTGATATTTTCGACCTGGGT+GGG - chr4_1:83800156-83800175 Msa0579170:three_prime_UTR 40.0%
! TTTCCTTCTAGGAAACATGC+AGG - chr4_1:83800286-83800305 Msa0579170:three_prime_UTR 40.0%
ATTGTGAGATTGAGATTGGG+AGG + chr4_1:83800476-83800495 None:intergenic 40.0%
!! CTATCTGAAGTTTGGGTTGT+GGG + chr4_1:83800534-83800553 None:intergenic 40.0%
CACAACCCAAACTTCAGATA+GGG - chr4_1:83800533-83800552 Msa0579170:three_prime_UTR 40.0%
GATCTTTCTGGATTCAAGTG+CGG - chr4_1:83800571-83800590 Msa0579170:three_prime_UTR 40.0%
TTGGTGAATGGTAAAACCTC+GGG + chr4_1:83800804-83800823 None:intergenic 40.0%
! GAAAATTTTGTGTCCTGCAG+GGG - chr4_1:83800869-83800888 Msa0579170:three_prime_UTR 40.0%
ATAAGGAGTAGGAGCAAGTT+TGG - chr4_1:83800981-83801000 Msa0579170:three_prime_UTR 40.0%
CAAATGATAGAGGCTTTCTG+TGG + chr4_1:83801322-83801341 None:intergenic 40.0%
TAATCAGTTAGTTAGTGCGC+TGG - chr4_1:83801402-83801421 Msa0579170:three_prime_UTR 40.0%
TGTGAATCCATTTGCAAAGG+AGG - chr4_1:83801570-83801589 Msa0579170:CDS 40.0%
GTGAATCCATTTGCAAAGGA+GGG - chr4_1:83801571-83801590 Msa0579170:CDS 40.0%
TGAATCCATTTGCAAAGGAG+GGG - chr4_1:83801572-83801591 Msa0579170:CDS 40.0%
! TGCCATTTCAACACACATCA+TGG + chr4_1:83801698-83801717 None:intergenic 40.0%
AGTTGAATTGAGCTCCAATG+AGG - chr4_1:83801718-83801737 Msa0579170:CDS 40.0%
AGATTACACTAGACCAAACC+AGG + chr4_1:83801831-83801850 None:intergenic 40.0%
CGTGGTATCCAATTTGTGTT+TGG - chr4_1:83801952-83801971 Msa0579170:intron 40.0%
GAGTTTACAAATCGAGCCTA+CGG - chr4_1:83802029-83802048 Msa0579170:intron 40.0%
TAAACTGGTGAAATCTCCGT+AGG + chr4_1:83802048-83802067 None:intergenic 40.0%
TGGAACATACAACAGATTGG+GGG + chr4_1:83802150-83802169 None:intergenic 40.0%
GTGGAACATACAACAGATTG+GGG + chr4_1:83802151-83802170 None:intergenic 40.0%
GGTGGAACATACAACAGATT+GGG + chr4_1:83802152-83802171 None:intergenic 40.0%
TTTATGCGCATGTACGTTCA+AGG - chr4_1:83802612-83802631 Msa0579170:intron 40.0%
ACAGCACTACATGTCAAGAT+TGG - chr4_1:83802832-83802851 Msa0579170:intron 40.0%
ATCACATGGATAGTGTAGGA+AGG + chr4_1:83802863-83802882 None:intergenic 40.0%
AGTGGTTGAGAAACATCACA+TGG + chr4_1:83802877-83802896 None:intergenic 40.0%
ATCAGCTCTTCTTAGATACG+AGG + chr4_1:83803048-83803067 None:intergenic 40.0%
TCGTATCTAAGAAGAGCTGA+TGG - chr4_1:83803047-83803066 Msa0579170:intron 40.0%
CTTGTCCACAATGTAGGTAA+TGG - chr4_1:83803093-83803112 Msa0579170:intron 40.0%
AACTGCCATTACCTACATTG+TGG + chr4_1:83803101-83803120 None:intergenic 40.0%
CAGTAGTGCAATCATTTGCA+AGG + chr4_1:83803406-83803425 None:intergenic 40.0%
AGAGTGGTTGTCACTCTTAA+TGG - chr4_1:83803575-83803594 Msa0579170:CDS 40.0%
! GCTTTGATTCGCCTTCATTT+CGG - chr4_1:83803622-83803641 Msa0579170:CDS 40.0%
CACAGTTGCATTGCATTCAT+AGG + chr4_1:83803713-83803732 None:intergenic 40.0%
! GTTGATATTTTCGACCTGGG+TGG - chr4_1:83800155-83800174 Msa0579170:three_prime_UTR 45.0%
ACACCTGCATGTTTCCTAGA+AGG + chr4_1:83800292-83800311 None:intergenic 45.0%
! ATGGTTTTCTGGGCCCATTT+GGG + chr4_1:83800404-83800423 None:intergenic 45.0%
! TGGTAGAGCGATGGTTTTCT+GGG + chr4_1:83800414-83800433 None:intergenic 45.0%
TTTGTAAGGTGGTAGAGCGA+TGG + chr4_1:83800423-83800442 None:intergenic 45.0%
CTGTCATCTTGTTACTCCCA+AGG - chr4_1:83800448-83800467 Msa0579170:three_prime_UTR 45.0%
TTGAGATTGGGAGGAACCTT+GGG + chr4_1:83800467-83800486 None:intergenic 45.0%
ATTGAGATTGGGAGGAACCT+TGG + chr4_1:83800468-83800487 None:intergenic 45.0%
!! CCTATCTGAAGTTTGGGTTG+TGG + chr4_1:83800535-83800554 None:intergenic 45.0%
CCACAACCCAAACTTCAGAT+AGG - chr4_1:83800532-83800551 Msa0579170:three_prime_UTR 45.0%
TTGCTTATCCAAAGAGGGTC+TGG - chr4_1:83801220-83801239 Msa0579170:three_prime_UTR 45.0%
AGCTCATTCATGAGCTAAGG+AGG + chr4_1:83801445-83801464 None:intergenic 45.0%
GGTAGCTCATTCATGAGCTA+AGG + chr4_1:83801448-83801467 None:intergenic 45.0%
TGAGCTCCAATGAGGAAAGT+CGG - chr4_1:83801726-83801745 Msa0579170:intron 45.0%
TAACTAGAGCAGAGGATGGT+GGG + chr4_1:83801753-83801772 None:intergenic 45.0%
TTAACTAGAGCAGAGGATGG+TGG + chr4_1:83801754-83801773 None:intergenic 45.0%
GGGTGGAACATACAACAGAT+TGG + chr4_1:83802153-83802172 None:intergenic 45.0%
! CCATTATTGGTTGGATAGGG+TGG + chr4_1:83802170-83802189 None:intergenic 45.0%
CCACCCTATCCAACCAATAA+TGG - chr4_1:83802167-83802186 Msa0579170:intron 45.0%
TGTAGGTCATGATGACATGC+CGG - chr4_1:83802208-83802227 Msa0579170:intron 45.0%
GAAAGCTTAACATGGGAACC+TGG - chr4_1:83802371-83802390 Msa0579170:intron 45.0%
AGTAAACGATGTTACCTGCC+AGG + chr4_1:83802392-83802411 None:intergenic 45.0%
GCTTGACCAAGAACGTCTAT+AGG + chr4_1:83802427-83802446 None:intergenic 45.0%
GCATTGCTTGTCCACAATGT+AGG - chr4_1:83803087-83803106 Msa0579170:intron 45.0%
!! GTATATGGCTTTGTGAGCAC+CGG - chr4_1:83803534-83803553 Msa0579170:CDS 45.0%
!! TATATGGCTTTGTGAGCACC+GGG - chr4_1:83803535-83803554 Msa0579170:CDS 45.0%
!!! TTTATTTTTATAAATAAACA+CGG + chr4_1:83803281-83803300 None:intergenic 5.0%
! GCAAGTGCTACTCACACGTT+TGG + chr4_1:83800120-83800139 None:intergenic 50.0%
AACTTAAGTGACACCCACCC+AGG + chr4_1:83800172-83800191 None:intergenic 50.0%
TGCTGCGCTTTCACGCTTAA+TGG + chr4_1:83800338-83800357 None:intergenic 50.0%
TGAATCCACCGCTCCCAAAT+GGG - chr4_1:83800388-83800407 Msa0579170:three_prime_UTR 50.0%
! GATGGTTTTCTGGGCCCATT+TGG + chr4_1:83800405-83800424 None:intergenic 50.0%
! GTGGTAGAGCGATGGTTTTC+TGG + chr4_1:83800415-83800434 None:intergenic 50.0%
GCTCTACCACCTTACAAACG+CGG - chr4_1:83800425-83800444 Msa0579170:three_prime_UTR 50.0%
AGATGACAGCCGCGTTTGTA+AGG + chr4_1:83800437-83800456 None:intergenic 50.0%
CCTCGGGAACAATTCGATTG+AGG + chr4_1:83800788-83800807 None:intergenic 50.0%
CCTCAATCGAATTGTTCCCG+AGG - chr4_1:83800785-83800804 Msa0579170:three_prime_UTR 50.0%
! ACCTTGGAAGCACACTCTAG+AGG - chr4_1:83800900-83800919 Msa0579170:three_prime_UTR 50.0%
! CCTTGGAAGCACACTCTAGA+GGG - chr4_1:83800901-83800920 Msa0579170:three_prime_UTR 50.0%
GTGTTCCCCTCCTTTGCAAA+TGG + chr4_1:83801580-83801599 None:intergenic 50.0%
CGGACATGTTTACGAATCCC+AGG + chr4_1:83801783-83801802 None:intergenic 50.0%
TCAAGTGCCCGTGTGATGTA+AGG + chr4_1:83802938-83802957 None:intergenic 50.0%
TTCGTGAGGTAGGATGATCC+CGG + chr4_1:83803556-83803575 None:intergenic 50.0%
TCATCCTACCTCACGAAGAG+TGG - chr4_1:83803559-83803578 Msa0579170:CDS 50.0%
ACAACCACTCTTCGTGAGGT+AGG + chr4_1:83803566-83803585 None:intergenic 50.0%
AGTGACAACCACTCTTCGTG+AGG + chr4_1:83803570-83803589 None:intergenic 50.0%
!! CACTTGCTGCCCAGTCGTTT+TGG - chr4_1:83800133-83800152 Msa0579170:three_prime_UTR 55.0%
CTGAATCCACCGCTCCCAAA+TGG - chr4_1:83800387-83800406 Msa0579170:three_prime_UTR 55.0%
TTTCTGGGCCCATTTGGGAG+CGG + chr4_1:83800399-83800418 None:intergenic 55.0%
TGACAGCCGCGTTTGTAAGG+TGG + chr4_1:83800434-83800453 None:intergenic 55.0%
GTGTGCTTCCAAGGTGCAGA+TGG + chr4_1:83800895-83800914 None:intergenic 55.0%
!! CCCTCTAGAGTGTGCTTCCA+AGG + chr4_1:83800904-83800923 None:intergenic 55.0%
GGCTAGATCCAGACCCTCTT+TGG + chr4_1:83801231-83801250 None:intergenic 55.0%
! GTGGGACCGACTTTCCTCAT+TGG + chr4_1:83801735-83801754 None:intergenic 55.0%
TGAACTGGGATGCTAGGTCC+TGG - chr4_1:83801810-83801829 Msa0579170:intron 55.0%
TGGGATGCTAGGTCCTGGTT+TGG - chr4_1:83801815-83801834 Msa0579170:intron 55.0%
GCTTAACATGGGAACCTGGC+AGG - chr4_1:83802375-83802394 Msa0579170:intron 55.0%
! GGGAGCGGTGGATTCAGCCA+TGG + chr4_1:83800384-83800403 None:intergenic 65.0%
AAGGTGCAGATGGCCCCTGC+AGG + chr4_1:83800885-83800904 None:intergenic 65.0%
TGCAGGGGCCATCTGCACCT+TGG - chr4_1:83800884-83800903 Msa0579170:three_prime_UTR 65.0%
CTGGGCCCATTTGGGAGCGG+TGG + chr4_1:83800396-83800415 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83800092 83803862 83800092 ID=Msa0579170;Name=Msa0579170
chr4_1 mRNA 83800092 83803862 83800092 ID=Msa0579170-mRNA-1;Parent=Msa0579170;Name=Msa0579170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.6|0.5|1|1|1|6|1409|157
chr4_1 exon 83800092 83801600 83800092 ID=Msa0579170-mRNA-1:exon:30667;Parent=Msa0579170-mRNA-1
chr4_1 exon 83801687 83801741 83801687 ID=Msa0579170-mRNA-1:exon:30666;Parent=Msa0579170-mRNA-1
chr4_1 exon 83803032 83803065 83803032 ID=Msa0579170-mRNA-1:exon:30665;Parent=Msa0579170-mRNA-1
chr4_1 exon 83803148 83803237 83803148 ID=Msa0579170-mRNA-1:exon:30664;Parent=Msa0579170-mRNA-1
chr4_1 exon 83803485 83803646 83803485 ID=Msa0579170-mRNA-1:exon:30663;Parent=Msa0579170-mRNA-1
chr4_1 exon 83803830 83803862 83803830 ID=Msa0579170-mRNA-1:exon:30662;Parent=Msa0579170-mRNA-1
chr4_1 CDS 83803830 83803862 83803830 ID=Msa0579170-mRNA-1:cds;Parent=Msa0579170-mRNA-1
chr4_1 CDS 83803485 83803646 83803485 ID=Msa0579170-mRNA-1:cds;Parent=Msa0579170-mRNA-1
chr4_1 CDS 83803148 83803237 83803148 ID=Msa0579170-mRNA-1:cds;Parent=Msa0579170-mRNA-1
chr4_1 CDS 83803032 83803065 83803032 ID=Msa0579170-mRNA-1:cds;Parent=Msa0579170-mRNA-1
chr4_1 CDS 83801687 83801741 83801687 ID=Msa0579170-mRNA-1:cds;Parent=Msa0579170-mRNA-1
chr4_1 CDS 83801501 83801600 83801501 ID=Msa0579170-mRNA-1:cds;Parent=Msa0579170-mRNA-1
chr4_1 three_prime_UTR 83800092 83801500 83800092 ID=Msa0579170-mRNA-1:three_prime_utr;Parent=Msa0579170-mRNA-1
Gene Sequence

>Msa0579170

ATGGAGATGGGTGTGGAAAGCATAACCAAACGTGTGTCATCACTGTGCGTAGCAAAGTTTCCATTAAGCGTGAAAGCGCAGCACCCAACCTTGAAGACAAAAGAATCCATGGCTGAATCCACCGCTCCCAAATGGGCCCAGAAAACCATCGCTCTACCACCTTACAAACGCGGCTGTCATCTTGTTACTCCCAAGCATACAAGTGCTTCTCTTACTATCAATGAAAATTATGACACTGATGTTCGCGATGATACCGAAACATTCCTCAATCGAATTGTTCCCGAGGGGCCATCTGCACCTTGGAAGCACACTCTAGAGGGTCATGATGACATGCCGGCTCATATTAAGTCATCAATGTTTGGCTGTGCACTCACGATACCAATTACAAATGGAAAGCTTAACATGGGAACCTGGCAGGTAACATCGTTTACTTCTAATGATTTACCTATAGACGTTCTTGGTCAAGCATGTTGA

Protein sequence

>Msa0579170

MEMGVESITKRVSSLCVAKFPLSVKAQHPTLKTKESMAESTAPKWAQKTIALPPYKRGCHLVTPKHTSASLTINENYDTDVRDDTETFLNRIVPEGPSAPWKHTLEGHDDMPAHIKSSMFGCALTIPITNGKLNMGTWQVTSFTSNDLPIDVLGQAC*