AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004340 MtrunA17_Chr1g0156891 88.219 365 10 1 1 332 1 365 0.0 638
Msa0004340 MtrunA17_Chr1g0156901 64.672 351 90 2 14 331 21 370 4.87e-167 469
Msa0004340 MtrunA17_Chr3g0142921 62.178 349 96 2 19 331 9 357 7.68e-158 446
Msa0004340 MtrunA17_Chr1g0156911 60.615 358 105 3 8 332 4 358 3.15e-155 439
Msa0004340 MtrunA17_Chr1g0156921 60.057 353 106 3 14 332 13 364 4.99e-150 426
Msa0004340 MtrunA17_Chr1g0156931 57.955 352 113 3 14 332 12 361 3.80e-148 421
Msa0004340 MtrunA17_Chr3g0142941 58.683 334 104 2 28 328 32 364 4.96e-145 414
Msa0004340 MtrunA17_Chr5g0405821 47.714 350 148 3 17 331 17 366 4.63e-110 325
Msa0004340 MtrunA17_Chr8g0371491 48.036 331 137 3 35 331 28 357 1.48e-105 313
Msa0004340 MtrunA17_Chr5g0405831 43.175 359 163 5 8 331 13 365 1.09e-99 298
Msa0004340 MtrunA17_Chr8g0371471 44.745 333 147 4 36 332 32 363 9.12e-97 290
Msa0004340 MtrunA17_Chr8g0371481 42.817 355 165 5 15 332 11 364 1.62e-95 287
Msa0004340 MtrunA17_Chr1g0157001 38.329 347 177 5 19 331 12 355 8.44e-73 229
Msa0004340 MtrunA17_Chr5g0438621 36.202 337 172 4 13 315 8 335 6.58e-72 226
Msa0004340 MtrunA17_Chr2g0283191 35.792 366 187 8 11 330 7 370 1.38e-70 224
Msa0004340 MtrunA17_Chr4g0046151 38.050 318 155 4 43 319 36 352 5.39e-70 222
Msa0004340 MtrunA17_Chr3g0105401 35.376 359 189 5 9 332 1 351 1.81e-69 220
Msa0004340 MtrunA17_Chr5g0432101 36.012 336 175 5 21 317 8 342 1.56e-67 216
Msa0004340 MtrunA17_Chr5g0438631 37.117 326 169 5 41 331 26 350 1.58e-67 215
Msa0004340 MtrunA17_Chr3g0120861 37.821 312 159 5 38 315 33 343 3.64e-66 212
Msa0004340 MtrunA17_Chr5g0438641 36.170 329 175 5 38 332 27 354 9.91e-65 208
Msa0004340 MtrunA17_Chr8g0341001 34.000 350 190 7 10 324 4 347 7.10e-63 203
Msa0004340 MtrunA17_Chr6g0463261 78.632 117 25 0 96 212 3 119 1.84e-61 192
Msa0004340 MtrunA17_Chr2g0320671 34.513 339 179 6 16 319 9 339 2.35e-59 194
Msa0004340 MtrunA17_Chr5g0437421 34.483 319 169 4 41 320 30 347 1.41e-58 192
Msa0004340 MtrunA17_Chr2g0330781 34.483 319 173 5 41 324 29 346 5.07e-58 191
Msa0004340 MtrunA17_Chr4g0027521 31.714 350 193 6 12 324 4 344 1.00e-52 177
Msa0004340 MtrunA17_Chr7g0275011 33.242 364 197 8 6 332 1 355 1.96e-52 177
Msa0004340 MtrunA17_Chr8g0380041 33.033 333 178 9 19 314 10 334 1.12e-49 169
Msa0004340 MtrunA17_Chr2g0285061 32.479 351 184 13 2 314 1 336 1.28e-48 167
Msa0004340 MtrunA17_Chr7g0275021 32.231 363 192 9 7 329 8 356 2.02e-48 166
Msa0004340 MtrunA17_Chr1g0182811 33.531 337 186 7 32 332 22 356 3.58e-48 166
Msa0004340 MtrunA17_Chr1g0189901 33.227 313 172 6 43 320 31 341 6.03e-47 162
Msa0004340 MtrunA17_Chr3g0086641 34.839 310 162 9 40 313 35 340 2.17e-46 161
Msa0004340 MtrunA17_Chr7g0274991 34.579 321 168 8 37 320 27 342 7.45e-46 159
Msa0004340 MtrunA17_Chr3g0077571 33.033 333 176 9 16 315 12 330 5.54e-45 157
Msa0004340 MtrunA17_Chr6g0457921 32.194 351 195 8 10 324 1 344 5.79e-45 157
Msa0004340 MtrunA17_Chr7g0275001 34.483 319 171 6 43 325 25 341 2.22e-44 155
Msa0004340 MtrunA17_Chr4g0017431 31.737 334 189 7 18 315 6 336 2.39e-44 155
Msa0004340 MtrunA17_Chr4g0008851 33.233 331 181 8 39 332 28 355 4.03e-44 155
Msa0004340 MtrunA17_Chr3g0131321 32.907 313 170 7 43 317 34 344 1.03e-43 154
Msa0004340 MtrunA17_Chr8g0374101 31.161 353 186 11 33 331 27 376 3.20e-43 152
Msa0004340 MtrunA17_Chr1g0189931 32.308 325 182 6 43 332 32 353 3.85e-43 152
Msa0004340 MtrunA17_Chr1g0189891 33.648 318 167 7 43 324 29 338 9.86e-43 151
Msa0004340 MtrunA17_Chr3g0077581 31.594 345 184 11 15 313 4 342 2.60e-42 150
Msa0004340 MtrunA17_Chr7g0215961 30.571 350 192 8 10 324 1 334 7.84e-42 149
Msa0004340 MtrunA17_Chr5g0396511 32.484 314 175 7 45 323 48 359 1.08e-41 149
Msa0004340 MtrunA17_Chr5g0434621 30.820 305 172 6 46 315 28 328 9.69e-41 145
Msa0004340 MtrunA17_Chr5g0444401 32.288 319 179 5 41 323 26 343 1.99e-39 142
Msa0004340 MtrunA17_Chr3g0099151 33.123 317 168 8 41 317 85 397 1.37e-38 141
Msa0004340 MtrunA17_Chr3g0099161 31.395 344 187 6 13 320 74 404 4.11e-38 140
Msa0004340 MtrunA17_Chr3g0092131 28.707 317 191 7 45 327 25 340 6.61e-36 133
Msa0004340 MtrunA17_Chr2g0301641 29.395 347 194 7 16 319 16 354 1.14e-35 133
Msa0004340 MtrunA17_Chr2g0284941 34.277 318 178 13 16 316 8 311 2.23e-35 131
Msa0004340 MtrunA17_Chr2g0294311 30.682 352 181 14 21 320 15 355 2.44e-35 132
Msa0004340 MtrunA17_Chr2g0294301 29.814 322 180 9 41 320 33 350 4.18e-35 131
Msa0004340 MtrunA17_Chr4g0060811 28.438 320 188 8 45 327 29 344 1.01e-34 130
Msa0004340 MtrunA17_Chr4g0068441 30.650 323 178 10 40 320 32 350 2.29e-34 129
Msa0004340 MtrunA17_Chr3g0099231 30.503 318 179 6 41 320 26 339 3.83e-34 129
Msa0004340 MtrunA17_Chr2g0285001 32.653 343 181 12 16 321 8 337 5.52e-34 128
Msa0004340 MtrunA17_Chr7g0229591 39.665 179 106 2 41 218 28 205 2.43e-33 122
Msa0004340 MtrunA17_Chr3g0085881 31.715 309 165 12 40 315 30 325 7.97e-33 124
Msa0004340 MtrunA17_Chr2g0284991 31.511 311 165 10 41 314 31 330 2.42e-32 124
Msa0004340 MtrunA17_Chr2g0284951 32.154 311 159 12 41 314 31 326 5.06e-31 120
Msa0004340 MtrunA17_Chr8g0380031 29.762 336 181 10 19 317 63 380 1.11e-30 120
Msa0004340 MtrunA17_Chr5g0420811 31.922 307 165 13 40 313 30 325 1.32e-30 118
Msa0004340 MtrunA17_Chr2g0284921 29.936 314 172 11 39 315 30 332 7.17e-30 117
Msa0004340 MtrunA17_Chr8g0349341 31.176 340 183 12 13 314 11 337 9.96e-30 116
Msa0004340 MtrunA17_Chr8g0344941 28.205 351 205 10 13 323 12 355 6.91e-29 114
Msa0004340 MtrunA17_Chr8g0349321 29.412 357 195 14 11 324 4 346 1.16e-26 108
Msa0004340 MtrunA17_Chr8g0349331 29.114 316 206 10 16 324 10 314 2.57e-26 106
Msa0004340 MtrunA17_Chr8g0344931 28.399 331 192 9 20 315 14 334 7.06e-26 105
Msa0004340 MtrunA17_Chr3g0104821 27.273 341 178 13 43 325 44 372 3.10e-25 104
Msa0004340 MtrunA17_Chr6g0469511 46.018 113 60 1 41 153 28 139 4.90e-25 98.6
Msa0004340 MtrunA17_Chr3g0112821 27.964 329 183 14 43 325 30 350 2.88e-24 101
Msa0004340 MtrunA17_Chr4g0027571 30.660 212 113 5 147 324 3 214 4.17e-24 98.6
Msa0004340 MtrunA17_Chr1g0160031 26.975 367 199 13 21 330 18 372 1.43e-23 100
Msa0004340 MtrunA17_Chr3g0093031 28.529 333 181 14 43 325 30 355 2.70e-23 99.0
Msa0004340 MtrunA17_Chr4g0027561 50.000 96 47 1 41 136 28 122 3.36e-23 93.6
Msa0004340 MtrunA17_Chr1g0160011 26.271 354 193 12 21 317 18 360 2.42e-22 96.7
Msa0004340 MtrunA17_Chr8g0349301 29.097 299 173 11 13 282 11 299 3.07e-22 95.1
Msa0004340 MtrunA17_Chr7g0229581 37.931 116 71 1 210 324 32 147 4.78e-21 88.2
Msa0004340 MtrunA17_Chr2g0317271 27.577 359 198 14 13 325 1 343 1.03e-20 91.7
Msa0004340 MtrunA17_Chr2g0283481 28.869 336 175 14 40 321 44 369 2.96e-20 90.9
Msa0004340 MtrunA17_Chr3g0085231 27.653 311 174 10 41 315 29 324 1.72e-19 87.8
Msa0004340 MtrunA17_Chr8g0370951 24.855 346 194 9 20 313 8 339 2.48e-19 87.8
Msa0004340 MtrunA17_Chr8g0370981 34.637 179 99 6 15 185 23 191 7.91e-19 86.7
Msa0004340 MtrunA17_Chr8g0347751 25.501 349 188 13 43 330 36 373 1.59e-18 85.5
Msa0004340 MtrunA17_Chr2g0321991 43.089 123 63 5 16 135 8 126 2.35e-18 80.1
Msa0004340 MtrunA17_Chr4g0018571 35.345 116 74 1 210 324 55 170 6.37e-18 80.1
Msa0004340 MtrunA17_Chr6g0450731 24.251 367 217 12 10 330 1 352 1.03e-17 83.2
Msa0004340 MtrunA17_Chr1g0189921 52.273 88 40 2 43 130 31 116 1.55e-17 78.6
Msa0004340 MtrunA17_Chr2g0283511 28.249 354 194 17 20 321 10 355 3.90e-17 81.6
Msa0004340 MtrunA17_Chr1g0178931 24.159 327 193 12 44 332 38 347 5.96e-17 80.5
Msa0004340 MtrunA17_Chr6g0455661 51.613 93 40 4 41 133 29 116 1.06e-14 74.7
Msa0004340 MtrunA17_Chr7g0266061 24.085 328 177 15 41 319 40 344 1.86e-13 70.5
Msa0004340 MtrunA17_Chr8g0370971 37.037 108 63 2 40 143 35 141 6.40e-13 65.9
Msa0004340 MtrunA17_Chr5g0432081 52.083 48 23 0 270 317 10 57 7.67e-13 63.2
Msa0004340 MtrunA17_Chr3g0104801 36.170 141 76 6 43 176 44 177 9.43e-13 65.9
Msa0004340 MtrunA17_Chr4g0018561 55.556 54 23 1 41 94 28 80 1.04e-12 63.5
Msa0004340 MtrunA17_Chr7g0228261 36.986 73 45 1 260 332 10 81 5.90e-12 61.2
Msa0004340 MtrunA17_Chr3g0104831 28.814 118 76 3 216 325 174 291 9.70e-12 65.1
Msa0004340 MtrunA17_Chr1g0198351 25.140 358 195 16 5 316 6 336 1.32e-11 64.7
Msa0004340 MtrunA17_Chr2g0308201 61.818 55 19 2 41 95 33 85 1.91e-11 59.7
Msa0004340 MtrunA17_Chr4g0027581 29.710 138 74 2 210 324 50 187 3.06e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004340 AT1G75890.2 48.596 356 149 2 7 328 11 366 6.57e-119 347
Msa0004340 AT1G75890.3 48.596 356 149 2 7 328 40 395 8.21e-119 348
Msa0004340 AT1G75890.1 46.883 369 149 3 7 328 11 379 1.85e-115 339
Msa0004340 AT1G75880.2 46.875 352 151 4 15 331 23 373 1.08e-110 327
Msa0004340 AT1G75900.1 48.127 347 144 4 20 332 20 364 5.43e-110 325
Msa0004340 AT1G75880.1 46.742 353 151 5 15 331 23 374 4.15e-109 323
Msa0004340 AT5G42170.1 44.910 334 152 4 30 332 37 369 1.67e-102 306
Msa0004340 AT3G14820.1 44.023 343 153 5 19 327 8 345 2.10e-93 282
Msa0004340 AT1G20120.1 43.465 329 147 4 38 332 73 396 2.21e-87 268
Msa0004340 AT3G43570.1 41.824 318 171 6 19 329 7 317 1.21e-86 263
Msa0004340 AT1G59406.1 43.119 327 146 6 38 329 25 346 1.54e-86 264
Msa0004340 AT1G59030.1 43.119 327 146 6 38 329 25 346 1.54e-86 264
Msa0004340 AT1G58725.1 43.119 327 146 6 38 329 25 346 1.54e-86 264
Msa0004340 AT1G20132.1 42.813 327 152 5 38 330 56 381 9.14e-84 258
Msa0004340 AT1G58520.3 41.896 327 143 7 38 329 25 339 1.21e-78 244
Msa0004340 AT1G58525.1 41.896 327 143 7 38 329 25 339 1.21e-78 244
Msa0004340 AT2G30220.1 38.988 336 167 3 19 319 12 344 5.70e-76 238
Msa0004340 AT2G31540.1 38.068 352 178 4 12 325 6 355 1.21e-74 234
Msa0004340 AT1G58430.1 38.529 340 172 4 12 316 6 343 9.84e-74 232
Msa0004340 AT2G30310.1 37.538 333 171 3 19 316 12 342 3.60e-73 230
Msa0004340 AT1G20130.2 39.039 333 161 5 38 329 179 510 2.18e-72 233
Msa0004340 AT1G20130.1 39.039 333 161 5 38 329 199 530 4.64e-72 233
Msa0004340 AT1G06990.1 35.942 345 177 5 15 316 1 344 3.28e-71 225
Msa0004340 AT1G73610.1 37.069 348 176 7 10 325 1 337 1.34e-70 223
Msa0004340 AT2G04570.1 39.482 309 152 5 41 315 26 333 1.44e-68 218
Msa0004340 AT2G40250.1 36.280 328 170 5 37 326 30 356 8.36e-68 217
Msa0004340 AT2G24560.1 36.012 336 178 4 16 316 9 342 1.55e-67 216
Msa0004340 AT3G43550.1 42.657 286 124 6 19 270 7 286 6.03e-66 209
Msa0004340 AT5G45960.1 37.237 333 167 5 40 331 44 375 2.25e-65 211
Msa0004340 AT5G03810.1 37.658 316 160 6 41 321 28 341 3.93e-65 209
Msa0004340 AT5G63170.1 36.810 326 162 5 22 316 10 322 1.51e-64 207
Msa0004340 AT1G23500.1 38.838 327 151 6 34 325 26 338 3.63e-63 204
Msa0004340 AT4G26790.1 36.145 332 171 10 33 327 18 345 4.61e-63 204
Msa0004340 AT4G26790.2 36.145 332 171 10 33 327 18 345 4.61e-63 204
Msa0004340 AT2G42990.1 36.570 309 161 5 39 313 24 331 6.68e-63 204
Msa0004340 AT1G75920.2 38.182 330 155 7 33 325 19 336 9.88e-62 200
Msa0004340 AT1G20135.1 37.742 310 150 6 43 320 29 327 8.26e-60 195
Msa0004340 AT5G03820.1 34.384 349 188 8 10 321 1 345 1.13e-59 196
Msa0004340 AT5G03820.2 35.277 343 178 8 19 321 35 373 2.72e-59 195
Msa0004340 AT1G75910.1 36.890 328 161 6 38 329 23 340 8.84e-59 193
Msa0004340 AT3G16370.1 34.146 328 180 4 32 324 19 345 1.20e-58 192
Msa0004340 AT1G75920.1 36.522 345 155 8 33 325 14 346 7.42e-58 191
Msa0004340 AT5G22810.1 34.385 317 168 7 41 319 32 346 3.69e-55 184
Msa0004340 AT3G53100.1 33.623 345 184 7 19 326 9 345 4.24e-54 181
Msa0004340 AT5G45950.1 31.515 330 191 6 34 332 31 356 3.17e-52 176
Msa0004340 AT1G75920.4 36.610 295 139 6 68 325 25 308 6.83e-51 171
Msa0004340 AT1G29670.1 34.024 338 182 10 14 315 3 335 7.41e-50 170
Msa0004340 AT1G29670.2 34.024 338 182 10 14 315 71 403 2.90e-49 170
Msa0004340 AT5G33370.1 33.718 347 192 7 21 332 8 351 1.50e-48 167
Msa0004340 AT5G18430.1 33.148 359 191 8 12 329 2 352 4.85e-48 165
Msa0004340 AT3G04290.1 33.231 325 180 6 35 324 21 343 2.08e-46 161
Msa0004340 AT2G24560.2 33.793 290 155 4 16 270 9 296 4.23e-46 159
Msa0004340 AT1G75930.1 34.568 324 167 10 38 326 24 337 9.57e-46 159
Msa0004340 AT4G28780.1 30.769 351 206 6 13 328 1 349 3.83e-45 158
Msa0004340 AT5G45670.1 32.335 334 183 9 19 315 7 334 4.64e-45 157
Msa0004340 AT3G50400.1 30.460 348 199 8 10 315 1 347 7.18e-44 155
Msa0004340 AT4G18970.1 32.372 312 170 8 41 315 26 333 2.21e-43 153
Msa0004340 AT2G23540.1 30.460 348 197 11 12 315 14 360 2.90e-43 153
Msa0004340 AT1G75920.3 32.727 330 142 8 33 325 19 305 4.04e-43 151
Msa0004340 AT5G08460.1 33.333 312 167 6 42 314 48 357 4.06e-43 153
Msa0004340 AT4G18970.2 32.372 312 170 8 41 315 26 333 5.81e-43 153
Msa0004340 AT1G29660.1 31.138 334 182 9 19 315 14 336 8.63e-42 149
Msa0004340 AT1G71250.1 32.635 334 182 8 22 315 16 346 1.39e-41 149
Msa0004340 AT1G71691.2 32.362 309 170 8 41 315 53 356 4.22e-41 147
Msa0004340 AT1G33811.1 29.310 348 200 9 10 315 1 344 1.62e-40 145
Msa0004340 AT5G37690.1 29.129 333 190 8 21 315 6 330 8.99e-40 143
Msa0004340 AT5G15720.1 33.131 329 175 11 41 329 28 351 1.63e-39 143
Msa0004340 AT4G10950.2 31.290 310 176 7 41 315 69 376 9.89e-39 142
Msa0004340 AT2G19010.1 32.704 318 151 13 40 315 27 323 1.50e-37 137
Msa0004340 AT2G19010.2 32.704 318 151 13 40 315 57 353 2.14e-37 137
Msa0004340 AT4G10950.1 31.290 310 172 8 41 315 69 372 4.25e-36 135
Msa0004340 AT5G55050.1 32.923 325 170 10 39 320 35 354 2.16e-35 132
Msa0004340 AT1G74460.1 27.731 357 210 10 10 332 1 343 2.26e-35 132
Msa0004340 AT5G37690.2 28.228 333 185 9 21 315 6 322 2.50e-35 131
Msa0004340 AT5G41890.1 30.925 346 177 12 45 331 33 375 7.96e-35 130
Msa0004340 AT1G53920.1 29.023 348 203 10 12 319 14 357 1.32e-34 130
Msa0004340 AT2G19060.1 32.188 320 160 14 41 320 28 330 2.06e-34 129
Msa0004340 AT2G19050.1 30.351 313 163 12 41 315 29 324 7.52e-34 127
Msa0004340 AT5G33370.2 30.368 326 184 7 21 311 8 325 8.95e-33 124
Msa0004340 AT2G31550.1 32.673 202 101 2 150 316 1 202 2.10e-31 118
Msa0004340 AT2G03980.2 32.797 311 162 13 42 313 42 344 2.48e-31 121
Msa0004340 AT2G03980.3 32.797 311 162 13 42 313 42 344 2.48e-31 121
Msa0004340 AT2G03980.1 32.797 311 162 13 42 313 42 344 2.48e-31 121
Msa0004340 AT2G03980.4 32.797 311 162 13 42 313 42 344 2.48e-31 121
Msa0004340 AT1G53940.2 28.612 353 202 12 15 324 11 356 1.44e-29 116
Msa0004340 AT1G71120.1 29.968 317 176 9 40 319 28 335 2.93e-28 112
Msa0004340 AT5G40990.1 29.888 358 195 16 12 324 8 354 3.24e-27 110
Msa0004340 AT2G04020.1 43.429 175 75 8 42 206 42 202 3.56e-27 107
Msa0004340 AT2G04020.2 34.122 296 136 17 42 313 42 302 1.15e-26 107
Msa0004340 AT4G30140.1 30.225 311 166 12 40 315 30 324 7.63e-26 106
Msa0004340 AT4G16230.1 39.623 159 92 3 41 198 28 183 4.04e-25 102
Msa0004340 AT2G19050.2 30.556 252 130 9 41 257 29 270 5.69e-25 102
Msa0004340 AT5G15720.2 32.593 270 137 11 41 270 28 292 6.57e-24 100
Msa0004340 AT1G54790.3 22.917 384 221 12 6 330 1 368 2.13e-23 99.8
Msa0004340 AT1G53990.1 28.701 331 167 13 43 324 35 345 2.19e-23 99.8
Msa0004340 AT1G71691.3 29.924 264 146 8 41 270 53 311 2.56e-23 98.6
Msa0004340 AT1G71691.1 26.562 256 151 6 94 315 3 255 5.33e-22 94.4
Msa0004340 AT3G05180.1 24.850 334 191 9 42 321 35 362 2.03e-21 94.4
Msa0004340 AT1G28610.2 27.778 378 195 15 6 325 1 358 3.18e-21 93.6
Msa0004340 AT1G28640.1 28.024 339 176 15 43 324 35 362 6.06e-21 92.8
Msa0004340 AT1G53940.1 33.641 217 122 8 15 227 11 209 6.23e-21 91.7
Msa0004340 AT5G15720.3 28.571 266 149 8 104 329 56 320 7.96e-21 92.0
Msa0004340 AT1G28650.1 28.184 369 196 16 5 319 6 359 8.46e-21 92.4
Msa0004340 AT2G27360.1 28.375 363 188 14 13 319 10 356 9.32e-21 92.4
Msa0004340 AT3G14225.2 28.135 327 181 14 43 324 37 354 9.38e-21 92.4
Msa0004340 AT3G14225.1 28.182 330 181 14 43 324 37 358 1.16e-20 92.0
Msa0004340 AT5G14450.1 24.538 379 218 10 9 330 10 377 1.41e-19 89.0
Msa0004340 AT1G28580.1 27.100 369 203 14 9 324 9 364 2.13e-19 88.6
Msa0004340 AT5G03610.1 27.044 318 173 12 44 319 44 344 4.64e-19 87.4
Msa0004340 AT1G28590.1 27.957 372 192 17 7 321 7 359 6.88e-19 87.0
Msa0004340 AT1G28570.1 27.957 372 199 15 9 325 5 362 2.18e-18 85.5
Msa0004340 AT1G31550.2 25.606 371 206 14 9 325 9 363 4.61e-18 84.7
Msa0004340 AT1G28600.1 26.542 373 204 16 6 324 1 357 1.88e-17 82.8
Msa0004340 AT5G45910.1 26.629 353 186 16 35 325 22 363 2.14e-17 82.4
Msa0004340 AT1G09390.1 26.989 352 198 14 10 315 6 344 4.81e-16 78.6
Msa0004340 AT1G56670.1 26.124 356 195 16 11 315 9 347 9.48e-16 77.8
Msa0004340 AT4G16233.1 36.792 106 62 2 221 321 8 113 4.03e-15 71.6
Msa0004340 AT1G31550.1 24.865 370 207 14 9 325 9 360 4.06e-15 75.9
Msa0004340 AT4G16220.1 46.875 96 46 3 41 136 28 118 1.81e-14 72.4
Msa0004340 AT1G54000.1 23.881 335 201 11 21 317 14 332 7.13e-13 69.3

Find 75 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGATTGCTTGATTATT+TGG 0.143460 1_1:-6761711 None:intergenic
TCCTGATTATGCTGATCTTA+TGG 0.251081 1_1:+6759512 Msa0004340:CDS
TCCTGCTGTTTGGATAATTC+TGG 0.287953 1_1:-6760097 None:intergenic
AAATCACTGGGCTGGAGATT+TGG 0.299729 1_1:-6759112 None:intergenic
GTTTGGATAATTCTGGTTAA+AGG 0.300373 1_1:-6760090 None:intergenic
AAAGAAAGGGAATTCATTAA+AGG 0.307233 1_1:-6757243 None:intergenic
ATGATATGGAGTTTGTCTTT+TGG 0.317220 1_1:+6761523 Msa0004340:CDS
GTTCCAGCAGTGTTGGTGTT+TGG 0.319690 1_1:+6757342 Msa0004340:CDS
GGATATAAAGTGGAAGATAA+AGG 0.350027 1_1:+6761435 Msa0004340:intron
AGAATTTCTACCAGCATACT+TGG 0.356901 1_1:+6759087 Msa0004340:CDS
TTCTACGTGTCCAAATGATA+TGG 0.363550 1_1:+6761509 Msa0004340:CDS
GCATATGCTAGTATATATTA+TGG 0.364303 1_1:+6757218 Msa0004340:exon
TTGTGGTCAGTTGAAGAATT+AGG 0.371518 1_1:+6759058 Msa0004340:intron
ATTGTAAACTCTAATAAATA+TGG 0.372700 1_1:+6760158 Msa0004340:CDS
AAGACAAACTCCATATCATT+TGG 0.391476 1_1:-6761519 None:intergenic
TGTCGATTTAGCATTTGTTA+TGG 0.398099 1_1:+6757099 Msa0004340:five_prime_UTR
CCTTTGAAATCTTTCCCATA+AGG 0.400518 1_1:-6757432 None:intergenic
CAGTCAGCAATATCATTATC+TGG 0.410346 1_1:+6759324 Msa0004340:intron
CAAGTAATATTATTATGAAA+TGG 0.416031 1_1:-6757272 None:intergenic
ACCATAAGATCAGCATAATC+AGG 0.417873 1_1:-6759513 None:intergenic
GGAGATTCTATCGTGGATAC+AGG 0.422024 1_1:+6757363 Msa0004340:CDS
GGAAAATTAAGAGGACTTGT+TGG 0.429168 1_1:+6759375 Msa0004340:CDS
CATAATCAGGAAAATCATAC+TGG 0.431311 1_1:-6759500 None:intergenic
ATTTAAACTTAATGCTTACA+TGG 0.432977 1_1:-6761754 None:intergenic
CTGAAACATTTGGTGGAAGT+TGG 0.433865 1_1:-6757320 None:intergenic
ATGTAAACAATCCTGCTGTT+TGG 0.434657 1_1:-6760107 None:intergenic
GATATAAAGTGGAAGATAAA+GGG 0.438720 1_1:+6761436 Msa0004340:CDS
CCATTTCAGAGAACAGCTGC+TGG 0.443466 1_1:+6759987 Msa0004340:intron
TACAACAGCAAATTGTCAAA+GGG 0.443709 1_1:+6760059 Msa0004340:CDS
TTCAAAGGAGGGATTCCAAC+AGG 0.451153 1_1:+6757447 Msa0004340:CDS
CAGCCCAGTGATTTACCTAC+TGG 0.453091 1_1:+6759121 Msa0004340:CDS
TCTCCAAACACCAACACTGC+TGG 0.455954 1_1:-6757345 None:intergenic
ATGCTTCTCATATTTAGAAA+AGG 0.461940 1_1:+6757164 Msa0004340:five_prime_UTR
ATTCTTTGAACAAATCTAGT+TGG 0.462739 1_1:-6759347 None:intergenic
ACCAGAATTATCCAAACAGC+AGG 0.467487 1_1:+6760096 Msa0004340:CDS
ACTGCTGGAACTGAAACATT+TGG 0.480723 1_1:-6757330 None:intergenic
GATAAAGGGTGTTGTGGCAC+GGG 0.481643 1_1:+6761450 Msa0004340:CDS
TTGGACACGTAGAAGACAAA+TGG 0.488601 1_1:-6761500 None:intergenic
AAAGTTCCCTCAGACTTCAT+AGG 0.491281 1_1:+6757486 Msa0004340:CDS
CAACTGAAAGTGTTTACAAA+AGG 0.491375 1_1:+6761559 Msa0004340:CDS
CTTGTTGCATGTAAAACAAA+GGG 0.493568 1_1:+6757291 Msa0004340:CDS
GTAATTTACAGGATATAAAG+TGG 0.495715 1_1:+6761425 Msa0004340:intron
TTGAAATCTTTCCCATAAGG+TGG 0.509489 1_1:-6757429 None:intergenic
CCATTGCTAAATCTTCCTGT+TGG 0.510054 1_1:-6757462 None:intergenic
TCCTTTGACATCTCAAACTG+CGG 0.523946 1_1:+6759177 Msa0004340:CDS
TGTTTCAGTTCCAGCAGTGT+TGG 0.525916 1_1:+6757335 Msa0004340:CDS
AGACAGAACAAACTTCATCT+TGG 0.527036 1_1:+6759401 Msa0004340:CDS
ATACAACAGCAAATTGTCAA+AGG 0.532727 1_1:+6760058 Msa0004340:CDS
ACTTGTTGCATGTAAAACAA+AGG 0.543187 1_1:+6757290 Msa0004340:CDS
GAATACATAGGAAAATTAAG+AGG 0.545890 1_1:+6759366 Msa0004340:CDS
GCGAGACAAGAAATATGTGT+TGG 0.549615 1_1:-6759466 None:intergenic
TTGTGGCACGGGCATAATTG+AGG 0.552013 1_1:+6761461 Msa0004340:CDS
CAGTAGGTAAATCACTGGGC+TGG 0.554672 1_1:-6759120 None:intergenic
AGATAAAGGGTGTTGTGGCA+CGG 0.555443 1_1:+6761449 Msa0004340:CDS
CACACCAGTAGGTAAATCAC+TGG 0.556309 1_1:-6759125 None:intergenic
GCTGGAACTGAAACATTTGG+TGG 0.559299 1_1:-6757327 None:intergenic
TATGGGAAAGATTTCAAAGG+AGG 0.566990 1_1:+6757435 Msa0004340:CDS
AGATTTGGATCCAAGTATGC+TGG 0.578680 1_1:-6759097 None:intergenic
ATGGGAAAGATTTCAAAGGA+GGG 0.579064 1_1:+6757436 Msa0004340:CDS
TGTAGTACCTATGAAGTCTG+AGG 0.593842 1_1:-6757493 None:intergenic
GTGGAAGATAAAGGGTGTTG+TGG 0.599401 1_1:+6761444 Msa0004340:CDS
CAATCAATTATGTATAGACA+TGG 0.601315 1_1:+6761724 Msa0004340:three_prime_UTR
CCTTATGGGAAAGATTTCAA+AGG 0.615497 1_1:+6757432 Msa0004340:CDS
TTACAATGATGTCAAGCAGA+GGG 0.617872 1_1:-6760142 None:intergenic
GATGCAAAACACACACCAGT+AGG 0.626175 1_1:-6759136 None:intergenic
GATTTGTTCAAAGAATACAT+AGG 0.632933 1_1:+6759354 Msa0004340:CDS
CCAACAGGAAGATTTAGCAA+TGG 0.634651 1_1:+6757462 Msa0004340:CDS
ACAACAGCAAATTGTCAAAG+GGG 0.637819 1_1:+6760060 Msa0004340:CDS
GTAGTACCTATGAAGTCTGA+GGG 0.653162 1_1:-6757492 None:intergenic
TTTCAGAGAACAGCTGCTGG+AGG 0.657240 1_1:+6759990 Msa0004340:intron
TTTACAATGATGTCAAGCAG+AGG 0.658645 1_1:-6760143 None:intergenic
ACCGCAGTTTGAGATGTCAA+AGG 0.661904 1_1:-6759178 None:intergenic
CATTACTGCCCAATACCACA+AGG 0.663942 1_1:-6759437 None:intergenic
GGTGTTTGGAGATTCTATCG+TGG 0.689331 1_1:+6757356 Msa0004340:CDS
ACACCAGTAGGTAAATCACT+GGG 0.703062 1_1:-6759124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTTTTTTTTGA+AGG - chr1_1:6757772-6757791 None:intergenic 10.0%
!!! TTCAATACATATATTTTAAT+CGG - chr1_1:6759737-6759756 None:intergenic 10.0%
!! CAAAAAAAATAAAAAATACT+TGG - chr1_1:6759878-6759897 None:intergenic 10.0%
!!! CAAGTATTTTTTATTTTTTT+TGG + chr1_1:6759876-6759895 Msa0004340:intron 10.0%
!! TAAATTCTTAAAAAAAATGA+GGG - chr1_1:6760348-6760367 None:intergenic 10.0%
!! TTAAATTCTTAAAAAAAATG+AGG - chr1_1:6760349-6760368 None:intergenic 10.0%
!!! AAATTCTACTTTTTATTTTT+TGG + chr1_1:6761151-6761170 Msa0004340:intron 10.0%
!!! AAACTAAAAATGTTTTATAA+AGG - chr1_1:6761319-6761338 None:intergenic 10.0%
!! CAAGTAATATTATTATGAAA+TGG - chr1_1:6757275-6757294 None:intergenic 15.0%
!!! ATTTTTTTTCGAACTTTTAA+AGG + chr1_1:6757623-6757642 Msa0004340:intron 15.0%
!!! TTTTTTTTCGAACTTTTAAA+GGG + chr1_1:6757624-6757643 Msa0004340:intron 15.0%
!! AAAATGCAATAAATAAAAAC+TGG + chr1_1:6757826-6757845 Msa0004340:intron 15.0%
!! AACAATGCATAATATATATA+AGG + chr1_1:6758090-6758109 Msa0004340:intron 15.0%
!!! TAGTTTGATTATGTTTTATA+TGG - chr1_1:6758194-6758213 None:intergenic 15.0%
!! TTGTAAAATAAATACATACA+TGG + chr1_1:6758555-6758574 Msa0004340:intron 15.0%
!! TGTAAAATAAATACATACAT+GGG + chr1_1:6758556-6758575 Msa0004340:intron 15.0%
!!! TAACTTCTAAAAAGATATTA+GGG - chr1_1:6759219-6759238 None:intergenic 15.0%
!!! TCACTTTTATAGTTATAAAA+TGG + chr1_1:6759836-6759855 Msa0004340:intron 15.0%
!! AAAATAAAAAATACTTGGTA+AGG - chr1_1:6759873-6759892 None:intergenic 15.0%
!! ATTGTAAACTCTAATAAATA+TGG + chr1_1:6760158-6760177 Msa0004340:CDS 15.0%
!! AAATTAAAGAAGTTTCATAT+AGG - chr1_1:6760554-6760573 None:intergenic 15.0%
!!! TTTGAAATTTTTATACTTTG+AGG - chr1_1:6760685-6760704 None:intergenic 15.0%
!!! TATGTTTTATATGGAATATC+AGG - chr1_1:6758185-6758204 None:intergenic 20.0%
!! TAAAACATAATCAAACTACT+AGG + chr1_1:6758196-6758215 Msa0004340:intron 20.0%
!! TTGTATGATGATAATTTCTA+TGG - chr1_1:6758622-6758641 None:intergenic 20.0%
!! ATCACAAACAAGTATATAAA+CGG - chr1_1:6758926-6758945 None:intergenic 20.0%
!! TTTATTAACTAGTGCTTTAA+GGG - chr1_1:6758968-6758987 None:intergenic 20.0%
!! ATTTATTAACTAGTGCTTTA+AGG - chr1_1:6758969-6758988 None:intergenic 20.0%
!!! AACTTCTAAAAAGATATTAG+GGG - chr1_1:6759218-6759237 None:intergenic 20.0%
!!! GTAACTTCTAAAAAGATATT+AGG - chr1_1:6759220-6759239 None:intergenic 20.0%
!!! CAAGTTAAGTAAGTTTTTAA+TGG - chr1_1:6759242-6759261 None:intergenic 20.0%
!! GTTGAAAATTAAAAAATAGG+TGG - chr1_1:6760301-6760320 None:intergenic 20.0%
!! AGGGTTGAAAATTAAAAAAT+AGG - chr1_1:6760304-6760323 None:intergenic 20.0%
!! AAAATTGAACCTAAACTTTA+AGG + chr1_1:6760400-6760419 Msa0004340:intron 20.0%
!! ACAATTTATAAACACATTAG+TGG + chr1_1:6760506-6760525 Msa0004340:intron 20.0%
!!! ATTTAAGTTTAAATGACTTG+AGG - chr1_1:6760588-6760607 None:intergenic 20.0%
!!! ACAATAACTCTTTTCATATA+AGG - chr1_1:6760831-6760850 None:intergenic 20.0%
!!! AAATGGAATATTAGTCATTT+TGG - chr1_1:6761012-6761031 None:intergenic 20.0%
!! CTAATATTCCATTTGTAAAT+TGG + chr1_1:6761018-6761037 Msa0004340:intron 20.0%
!!! TATGTTCCTACATTTTAATT+AGG - chr1_1:6761223-6761242 None:intergenic 20.0%
!! TGTGTATACAAAAAACAAAA+CGG - chr1_1:6761631-6761650 None:intergenic 20.0%
!! TAATTGATTGCTTGATTATT+TGG - chr1_1:6761714-6761733 None:intergenic 20.0%
!! ATTTAAACTTAATGCTTACA+TGG - chr1_1:6761757-6761776 None:intergenic 20.0%
! ATGCTTCTCATATTTAGAAA+AGG + chr1_1:6757164-6757183 Msa0004340:five_prime_UTR 25.0%
! GCATATGCTAGTATATATTA+TGG + chr1_1:6757218-6757237 Msa0004340:exon 25.0%
! AAAGAAAGGGAATTCATTAA+AGG - chr1_1:6757246-6757265 None:intergenic 25.0%
! GAAATGGAGAAAAAAAGAAA+GGG - chr1_1:6757259-6757278 None:intergenic 25.0%
! TGAAATGGAGAAAAAAAGAA+AGG - chr1_1:6757260-6757279 None:intergenic 25.0%
!! ATGTTTAGAATACTCTAAGA+TGG - chr1_1:6757651-6757670 None:intergenic 25.0%
!! TCTTAGAGTATTCTAAACAT+AGG + chr1_1:6757651-6757670 Msa0004340:intron 25.0%
! CTAAACATAGGTATTCAAAA+TGG + chr1_1:6757663-6757682 Msa0004340:intron 25.0%
!! CATAATTGAATCGGTTTAAT+CGG + chr1_1:6757706-6757725 Msa0004340:intron 25.0%
! TAGTTTATTTATCCGTGATT+CGG - chr1_1:6757740-6757759 None:intergenic 25.0%
!! AAGACATATTTTCCTTTTGT+GGG - chr1_1:6757919-6757938 None:intergenic 25.0%
! TATGTTTAAACAATGTCCTT+AGG + chr1_1:6757991-6758010 Msa0004340:intron 25.0%
! TTTGAGTATATATTGTCATC+AGG - chr1_1:6758042-6758061 None:intergenic 25.0%
! TAATGACTTAATCTTGATTG+TGG - chr1_1:6758231-6758250 None:intergenic 25.0%
! ACAATCAAGATTAAGTCATT+AGG + chr1_1:6758230-6758249 Msa0004340:intron 25.0%
! TTAGTGAGTGTAAATACAAA+AGG - chr1_1:6758348-6758367 None:intergenic 25.0%
! GATAATTTCTATGGAATCTT+GGG - chr1_1:6758613-6758632 None:intergenic 25.0%
! TGATAATTTCTATGGAATCT+TGG - chr1_1:6758614-6758633 None:intergenic 25.0%
!! TATGTAGTACATTTTTGAAC+AGG + chr1_1:6758721-6758740 Msa0004340:intron 25.0%
!! ATGTAGTACATTTTTGAACA+GGG + chr1_1:6758722-6758741 Msa0004340:intron 25.0%
! ATGATACAAGTAAGAATAGA+TGG + chr1_1:6758861-6758880 Msa0004340:intron 25.0%
!! CAAGTATATAAACGGATTTA+GGG - chr1_1:6758918-6758937 None:intergenic 25.0%
!! ACAAGTATATAAACGGATTT+AGG - chr1_1:6758919-6758938 None:intergenic 25.0%
!!! TAACCTACTTTTTTGTATTG+TGG + chr1_1:6759041-6759060 Msa0004340:intron 25.0%
! ATTCTTTGAACAAATCTAGT+TGG - chr1_1:6759350-6759369 None:intergenic 25.0%
!! GATTTGTTCAAAGAATACAT+AGG + chr1_1:6759354-6759373 Msa0004340:CDS 25.0%
! GAATACATAGGAAAATTAAG+AGG + chr1_1:6759366-6759385 Msa0004340:CDS 25.0%
! TTCAGCTTCTAATTTCTTAA+AGG + chr1_1:6759539-6759558 Msa0004340:intron 25.0%
! TTAACAAGTTGCAAATATCT+TGG + chr1_1:6759574-6759593 Msa0004340:intron 25.0%
! TAACAAGTTGCAAATATCTT+GGG + chr1_1:6759575-6759594 Msa0004340:intron 25.0%
! CAACACACATTCATTTAAAT+TGG + chr1_1:6759638-6759657 Msa0004340:intron 25.0%
! TAATCGGTTGAAATTCAAAT+TGG - chr1_1:6759721-6759740 None:intergenic 25.0%
!! ATGGTAATTACAACTTTTGT+TGG + chr1_1:6760177-6760196 Msa0004340:intron 25.0%
! TTTGTTGGATTATTTGAACA+AGG + chr1_1:6760192-6760211 Msa0004340:intron 25.0%
!!! GTTAAGATGTTTTTAAGTAG+TGG - chr1_1:6760264-6760283 None:intergenic 25.0%
! TCTCATTTAAACTTGAATGA+GGG - chr1_1:6760323-6760342 None:intergenic 25.0%
! TCTCTGATGCTAATTAATTT+GGG - chr1_1:6760381-6760400 None:intergenic 25.0%
! TTCTCTGATGCTAATTAATT+TGG - chr1_1:6760382-6760401 None:intergenic 25.0%
! CTATTACCTCATTTACAAAT+GGG - chr1_1:6760620-6760639 None:intergenic 25.0%
! ACTATTACCTCATTTACAAA+TGG - chr1_1:6760621-6760640 None:intergenic 25.0%
! ACAATAAGTATGCATATTGA+AGG - chr1_1:6760767-6760786 None:intergenic 25.0%
!! TCATTACAACTTTAGTTTCA+GGG + chr1_1:6760985-6761004 Msa0004340:intron 25.0%
! TCTACTATCCAATTTACAAA+TGG - chr1_1:6761029-6761048 None:intergenic 25.0%
! TTTGAGAAAAAGCTTAAAAG+AGG - chr1_1:6761072-6761091 None:intergenic 25.0%
!!! TCTTTTAAGCTTTTTCTCAA+AGG + chr1_1:6761071-6761090 Msa0004340:intron 25.0%
!!! CTTTTAAGCTTTTTCTCAAA+GGG + chr1_1:6761072-6761091 Msa0004340:intron 25.0%
!!! TTTTTAGTTGTATAGTCTCA+AGG + chr1_1:6761120-6761139 Msa0004340:intron 25.0%
!!! TTTATTTTTTGGCTAGTTAG+TGG + chr1_1:6761162-6761181 Msa0004340:intron 25.0%
!!! TTATTTTTTGGCTAGTTAGT+GGG + chr1_1:6761163-6761182 Msa0004340:intron 25.0%
! TTAGCGAAATTGTAATTTAC+AGG + chr1_1:6761414-6761433 Msa0004340:intron 25.0%
! GTAATTTACAGGATATAAAG+TGG + chr1_1:6761425-6761444 Msa0004340:intron 25.0%
! GATATAAAGTGGAAGATAAA+GGG + chr1_1:6761436-6761455 Msa0004340:CDS 25.0%
!!! TTGACGTATTTTTGGATAAT+AGG - chr1_1:6761594-6761613 None:intergenic 25.0%
! GTGTATACAAAAAACAAAAC+GGG - chr1_1:6761630-6761649 None:intergenic 25.0%
! CAATCAATTATGTATAGACA+TGG + chr1_1:6761724-6761743 Msa0004340:three_prime_UTR 25.0%
!! TGTCGATTTAGCATTTGTTA+TGG + chr1_1:6757099-6757118 Msa0004340:five_prime_UTR 30.0%
! ACTTGTTGCATGTAAAACAA+AGG + chr1_1:6757290-6757309 Msa0004340:CDS 30.0%
CTTGTTGCATGTAAAACAAA+GGG + chr1_1:6757291-6757310 Msa0004340:CDS 30.0%
! TTCCCTTTTGTCTTATACAT+CGG - chr1_1:6757581-6757600 None:intergenic 30.0%
ATGGAATCATTATGACATCT+AGG + chr1_1:6757682-6757701 Msa0004340:intron 30.0%
CATCTAGGTCATAATTGAAT+CGG + chr1_1:6757697-6757716 Msa0004340:intron 30.0%
AAAACTGGTTGAATCAATTG+CGG + chr1_1:6757841-6757860 Msa0004340:intron 30.0%
TCAATTGCGGTTATTTAGTT+AGG + chr1_1:6757854-6757873 Msa0004340:intron 30.0%
CAATTGCGGTTATTTAGTTA+GGG + chr1_1:6757855-6757874 Msa0004340:intron 30.0%
!! TATTTTTAACATGTGCCCTA+AGG + chr1_1:6757878-6757897 Msa0004340:intron 30.0%
! ATTTTTAACATGTGCCCTAA+GGG + chr1_1:6757879-6757898 Msa0004340:intron 30.0%
! CAAGACATATTTTCCTTTTG+TGG - chr1_1:6757920-6757939 None:intergenic 30.0%
! AAAAGTAGCAACTTTTGCAT+TGG - chr1_1:6757970-6757989 None:intergenic 30.0%
AAATGTTAACAAGTGTCCTA+AGG - chr1_1:6758010-6758029 None:intergenic 30.0%
! ATAAACACAAGTCTTGTATG+CGG - chr1_1:6758150-6758169 None:intergenic 30.0%
TATATGGAATATCAGGTTTG+AGG - chr1_1:6758178-6758197 None:intergenic 30.0%
CGTTGAAACAAGAAATTTGT+CGG - chr1_1:6758260-6758279 None:intergenic 30.0%
TAGAAACTAAAGTGAATCGA+CGG - chr1_1:6758290-6758309 None:intergenic 30.0%
AATAAATACATACATGGGAG+AGG + chr1_1:6758561-6758580 Msa0004340:intron 30.0%
! ACATTTTTGAACAGGGTAAT+CGG + chr1_1:6758729-6758748 Msa0004340:intron 30.0%
! TATATAAACGGATTTAGGGA+TGG - chr1_1:6758914-6758933 None:intergenic 30.0%
TGACCACAATACAAAAAAGT+AGG - chr1_1:6759047-6759066 None:intergenic 30.0%
CATAATCAGGAAAATCATAC+TGG - chr1_1:6759503-6759522 None:intergenic 30.0%
TGATATCCTCTGAATCATAT+AGG + chr1_1:6759674-6759693 Msa0004340:intron 30.0%
TTCCTTTCATTTGTATTGAG+AGG - chr1_1:6759907-6759926 None:intergenic 30.0%
TGAAAGGAAATATATGAGCT+AGG + chr1_1:6759918-6759937 Msa0004340:intron 30.0%
ATACAACAGCAAATTGTCAA+AGG + chr1_1:6760058-6760077 Msa0004340:CDS 30.0%
TACAACAGCAAATTGTCAAA+GGG + chr1_1:6760059-6760078 Msa0004340:CDS 30.0%
! GTTTGGATAATTCTGGTTAA+AGG - chr1_1:6760093-6760112 None:intergenic 30.0%
ATTATTTGAACAAGGTCACT+TGG + chr1_1:6760200-6760219 Msa0004340:intron 30.0%
TTATTTGAACAAGGTCACTT+GGG + chr1_1:6760201-6760220 Msa0004340:intron 30.0%
GTCTCATTTAAACTTGAATG+AGG - chr1_1:6760324-6760343 None:intergenic 30.0%
! TGATGCTAATTAATTTGGGT+GGG - chr1_1:6760377-6760396 None:intergenic 30.0%
TATGCTTCTCCTTAAAGTTT+AGG - chr1_1:6760412-6760431 None:intergenic 30.0%
TTTGAATATGAAACCCACTT+AGG - chr1_1:6760468-6760487 None:intergenic 30.0%
ATTTGACCCATTTGTAAATG+AGG + chr1_1:6760611-6760630 Msa0004340:intron 30.0%
GACTATTCATTACACATTCA+GGG - chr1_1:6760653-6760672 None:intergenic 30.0%
TGACTATTCATTACACATTC+AGG - chr1_1:6760654-6760673 None:intergenic 30.0%
ACTAATGAGTTGCACAATTA+GGG - chr1_1:6760713-6760732 None:intergenic 30.0%
AACTAATGAGTTGCACAATT+AGG - chr1_1:6760714-6760733 None:intergenic 30.0%
! CTCATTACAACTTTAGTTTC+AGG + chr1_1:6760984-6761003 Msa0004340:intron 30.0%
! CATTACAACTTTAGTTTCAG+GGG + chr1_1:6760986-6761005 Msa0004340:intron 30.0%
CACATGCCTAATTAAAATGT+AGG + chr1_1:6761214-6761233 Msa0004340:intron 30.0%
TTTATTCATCCTCACTTGTA+TGG + chr1_1:6761340-6761359 Msa0004340:intron 30.0%
AATAAGTTTCCATACAAGTG+AGG - chr1_1:6761352-6761371 None:intergenic 30.0%
GGATATAAAGTGGAAGATAA+AGG + chr1_1:6761435-6761454 Msa0004340:intron 30.0%
AAGACAAACTCCATATCATT+TGG - chr1_1:6761522-6761541 None:intergenic 30.0%
! ATGATATGGAGTTTGTCTTT+TGG + chr1_1:6761523-6761542 Msa0004340:CDS 30.0%
! TGATATGGAGTTTGTCTTTT+GGG + chr1_1:6761524-6761543 Msa0004340:CDS 30.0%
! CTTTTGTAAACACTTTCAGT+TGG - chr1_1:6761561-6761580 None:intergenic 30.0%
!! CAACTGAAAGTGTTTACAAA+AGG + chr1_1:6761559-6761578 Msa0004340:CDS 30.0%
! TGAAATCGTTGACGTATTTT+TGG - chr1_1:6761602-6761621 None:intergenic 30.0%
!! CAAAATCACTTTTCATGAGT+TGG + chr1_1:6761815-6761834 Msa0004340:three_prime_UTR 30.0%
! CAAATCATCGTCATCTTTTA+TGG - chr1_1:6761856-6761875 None:intergenic 30.0%
! GTTGCAATTTTCCACCTTAT+GGG + chr1_1:6757418-6757437 Msa0004340:CDS 35.0%
TTGAAATCTTTCCCATAAGG+TGG - chr1_1:6757432-6757451 None:intergenic 35.0%
!! CCTTTGAAATCTTTCCCATA+AGG - chr1_1:6757435-6757454 None:intergenic 35.0%
CCTTATGGGAAAGATTTCAA+AGG + chr1_1:6757432-6757451 Msa0004340:CDS 35.0%
TATGGGAAAGATTTCAAAGG+AGG + chr1_1:6757435-6757454 Msa0004340:CDS 35.0%
ATGGGAAAGATTTCAAAGGA+GGG + chr1_1:6757436-6757455 Msa0004340:CDS 35.0%
TGAAATACTACTTGTCTAGC+AGG - chr1_1:6757538-6757557 None:intergenic 35.0%
TGACCGATGTATAAGACAAA+AGG + chr1_1:6757575-6757594 Msa0004340:intron 35.0%
GACCGATGTATAAGACAAAA+GGG + chr1_1:6757576-6757595 Msa0004340:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr1_1:6757896-6757915 None:intergenic 35.0%
TTGTTTAAGGAACCCACAAA+AGG + chr1_1:6757904-6757923 Msa0004340:intron 35.0%
TATGGTTGTTGAGGTTTGAA+CGG - chr1_1:6758120-6758139 None:intergenic 35.0%
!!! GGTCTTTTTTATGGTTGTTG+AGG - chr1_1:6758129-6758148 None:intergenic 35.0%
!!! CTTGTATGCGGTCTTTTTTA+TGG - chr1_1:6758138-6758157 None:intergenic 35.0%
GAGTGTAAATACAAAAGGAC+CGG - chr1_1:6758343-6758362 None:intergenic 35.0%
ATGGAATCTTGGGTTTGAAT+TGG - chr1_1:6758603-6758622 None:intergenic 35.0%
TTGTGGTCAGTTGAAGAATT+AGG + chr1_1:6759058-6759077 Msa0004340:intron 35.0%
AGAATTTCTACCAGCATACT+TGG + chr1_1:6759087-6759106 Msa0004340:CDS 35.0%
CAGTCAGCAATATCATTATC+TGG + chr1_1:6759324-6759343 Msa0004340:intron 35.0%
GGAAAATTAAGAGGACTTGT+TGG + chr1_1:6759375-6759394 Msa0004340:CDS 35.0%
AGACAGAACAAACTTCATCT+TGG + chr1_1:6759401-6759420 Msa0004340:CDS 35.0%
! TAGTCTTTTCCTTGTGGTAT+TGG + chr1_1:6759428-6759447 Msa0004340:CDS 35.0%
! AGTCTTTTCCTTGTGGTATT+GGG + chr1_1:6759429-6759448 Msa0004340:CDS 35.0%
TCCTGATTATGCTGATCTTA+TGG + chr1_1:6759512-6759531 Msa0004340:CDS 35.0%
ACCATAAGATCAGCATAATC+AGG - chr1_1:6759516-6759535 None:intergenic 35.0%
GTGAAACCTATATGATTCAG+AGG - chr1_1:6759683-6759702 None:intergenic 35.0%
TCAAGTCTCAACACAAAAAC+TGG + chr1_1:6759809-6759828 Msa0004340:intron 35.0%
CTTTCATTTGTATTGAGAGG+TGG - chr1_1:6759904-6759923 None:intergenic 35.0%
CACCTCTCAATACAAATGAA+AGG + chr1_1:6759902-6759921 Msa0004340:intron 35.0%
AAATATATGAGCTAGGTGCA+AGG + chr1_1:6759925-6759944 Msa0004340:intron 35.0%
TATTCAATGCACCACCAATT+GGG + chr1_1:6759958-6759977 Msa0004340:intron 35.0%
ACAACAGCAAATTGTCAAAG+GGG + chr1_1:6760060-6760079 Msa0004340:CDS 35.0%
ATGTAAACAATCCTGCTGTT+TGG - chr1_1:6760110-6760129 None:intergenic 35.0%
TTACAATGATGTCAAGCAGA+GGG - chr1_1:6760145-6760164 None:intergenic 35.0%
TTTACAATGATGTCAAGCAG+AGG - chr1_1:6760146-6760165 None:intergenic 35.0%
ACTTGGGTATTTGAACTAGT+CGG + chr1_1:6760217-6760236 Msa0004340:intron 35.0%
! CTGATGCTAATTAATTTGGG+TGG - chr1_1:6760378-6760397 None:intergenic 35.0%
! TTAAGGAGAAGCATACTCTT+AGG + chr1_1:6760417-6760436 Msa0004340:intron 35.0%
GGACATAACTCTGATACTAA+TGG + chr1_1:6761184-6761203 Msa0004340:intron 35.0%
ATGAGTGTTCATAAGTGTGA+AGG + chr1_1:6761251-6761270 Msa0004340:intron 35.0%
!!! GTCTTTTGGTTCCAACTTTT+AGG - chr1_1:6761284-6761303 None:intergenic 35.0%
! GGTGTAGAATTTGAGTCTTT+TGG - chr1_1:6761298-6761317 None:intergenic 35.0%
TTCTACGTGTCCAAATGATA+TGG + chr1_1:6761509-6761528 Msa0004340:CDS 35.0%
! CTGAAACATTTGGTGGAAGT+TGG - chr1_1:6757323-6757342 None:intergenic 40.0%
ACTGCTGGAACTGAAACATT+TGG - chr1_1:6757333-6757352 None:intergenic 40.0%
! CGTTGCAATTTTCCACCTTA+TGG + chr1_1:6757417-6757436 Msa0004340:CDS 40.0%
CCATTGCTAAATCTTCCTGT+TGG - chr1_1:6757465-6757484 None:intergenic 40.0%
CCAACAGGAAGATTTAGCAA+TGG + chr1_1:6757462-6757481 Msa0004340:CDS 40.0%
AAAGTTCCCTCAGACTTCAT+AGG + chr1_1:6757486-6757505 Msa0004340:CDS 40.0%
GTAGTACCTATGAAGTCTGA+GGG - chr1_1:6757495-6757514 None:intergenic 40.0%
TGTAGTACCTATGAAGTCTG+AGG - chr1_1:6757496-6757515 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr1_1:6757897-6757916 None:intergenic 40.0%
! CAGTCTAAGTTGAATCTCCA+AGG + chr1_1:6758407-6758426 Msa0004340:intron 40.0%
TTGAACAGGGTAATCGGTAA+AGG + chr1_1:6758735-6758754 Msa0004340:intron 40.0%
AGATTTGGATCCAAGTATGC+TGG - chr1_1:6759100-6759119 None:intergenic 40.0%
ACACCAGTAGGTAAATCACT+GGG - chr1_1:6759127-6759146 None:intergenic 40.0%
TCCTTTGACATCTCAAACTG+CGG + chr1_1:6759177-6759196 Msa0004340:CDS 40.0%
! GGCAAATAGTCTTTTCCTTG+TGG + chr1_1:6759422-6759441 Msa0004340:CDS 40.0%
GCGAGACAAGAAATATGTGT+TGG - chr1_1:6759469-6759488 None:intergenic 40.0%
GTATTCAATGCACCACCAAT+TGG + chr1_1:6759957-6759976 Msa0004340:intron 40.0%
TGAAATGGCAAACACCCAAT+TGG - chr1_1:6759975-6759994 None:intergenic 40.0%
ACCAGAATTATCCAAACAGC+AGG + chr1_1:6760096-6760115 Msa0004340:CDS 40.0%
! TCCTGCTGTTTGGATAATTC+TGG - chr1_1:6760100-6760119 None:intergenic 40.0%
!! AGCTTTTTCTCAAAGGGACA+TGG + chr1_1:6761078-6761097 Msa0004340:intron 40.0%
GTGTTCATAAGTGTGAAGGT+CGG + chr1_1:6761255-6761274 Msa0004340:intron 40.0%
TTGGACACGTAGAAGACAAA+TGG - chr1_1:6761503-6761522 None:intergenic 40.0%
TGTCTTGTGAGAGGCAATTT+GGG + chr1_1:6761658-6761677 Msa0004340:intron 40.0%
GCTGGAACTGAAACATTTGG+TGG - chr1_1:6757330-6757349 None:intergenic 45.0%
TGTTTCAGTTCCAGCAGTGT+TGG + chr1_1:6757335-6757354 Msa0004340:CDS 45.0%
GGTGTTTGGAGATTCTATCG+TGG + chr1_1:6757356-6757375 Msa0004340:CDS 45.0%
GGAGATTCTATCGTGGATAC+AGG + chr1_1:6757363-6757382 Msa0004340:CDS 45.0%
TTCAAAGGAGGGATTCCAAC+AGG + chr1_1:6757447-6757466 Msa0004340:CDS 45.0%
TCGGTCTTTCAACCGAATCA+CGG + chr1_1:6757725-6757744 Msa0004340:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr1_1:6757891-6757910 Msa0004340:intron 45.0%
AATATTGCCACCTCACCTCA+AGG + chr1_1:6758311-6758330 Msa0004340:intron 45.0%
GCAATCACAATATAGCGCCT+TGG - chr1_1:6758427-6758446 None:intergenic 45.0%
! AAATCACTGGGCTGGAGATT+TGG - chr1_1:6759115-6759134 None:intergenic 45.0%
CACACCAGTAGGTAAATCAC+TGG - chr1_1:6759128-6759147 None:intergenic 45.0%
GATGCAAAACACACACCAGT+AGG - chr1_1:6759139-6759158 None:intergenic 45.0%
! ACTGGTGTGTGTTTTGCATC+TGG + chr1_1:6759139-6759158 Msa0004340:CDS 45.0%
! ACCGCAGTTTGAGATGTCAA+AGG - chr1_1:6759181-6759200 None:intergenic 45.0%
CATTACTGCCCAATACCACA+AGG - chr1_1:6759440-6759459 None:intergenic 45.0%
TATATGAGCTAGGTGCAAGG+AGG + chr1_1:6759928-6759947 Msa0004340:intron 45.0%
AATGGCAAACACCCAATTGG+TGG - chr1_1:6759972-6759991 None:intergenic 45.0%
!! CTAGTCGGTGTTATTGAGTG+TGG + chr1_1:6760232-6760251 Msa0004340:intron 45.0%
TACCACCAGACTAACCTAAG+TGG + chr1_1:6760451-6760470 Msa0004340:intron 45.0%
ACCACCAGACTAACCTAAGT+GGG + chr1_1:6760452-6760471 Msa0004340:intron 45.0%
! GAAACCCACTTAGGTTAGTC+TGG - chr1_1:6760459-6760478 None:intergenic 45.0%
AAGGTCGGTGACCTAAAAGT+TGG + chr1_1:6761270-6761289 Msa0004340:intron 45.0%
!! GTGGAAGATAAAGGGTGTTG+TGG + chr1_1:6761444-6761463 Msa0004340:CDS 45.0%
!! AGATAAAGGGTGTTGTGGCA+CGG + chr1_1:6761449-6761468 Msa0004340:CDS 45.0%
CTGTCTTGTGAGAGGCAATT+TGG + chr1_1:6761657-6761676 Msa0004340:intron 45.0%
!!! ATCTATTTATTATTTTTTTT+TGG + chr1_1:6758677-6758696 Msa0004340:intron 5.0%
!! GTTCCAGCAGTGTTGGTGTT+TGG + chr1_1:6757342-6757361 Msa0004340:CDS 50.0%
TCTCCAAACACCAACACTGC+TGG - chr1_1:6757348-6757367 None:intergenic 50.0%
TGTGATTGCCTCGTGCCTTA+TGG + chr1_1:6758438-6758457 Msa0004340:intron 50.0%
TCGTGCCTTATGGACACTCA+GGG + chr1_1:6758448-6758467 Msa0004340:intron 50.0%
AGTAGCCCTGAGTGTCCATA+AGG - chr1_1:6758456-6758475 None:intergenic 50.0%
!! TGGCAATGAGGATGATGGGT+GGG - chr1_1:6758894-6758913 None:intergenic 50.0%
!! ATGGCAATGAGGATGATGGG+TGG - chr1_1:6758895-6758914 None:intergenic 50.0%
GGGATGGCAATGAGGATGAT+GGG - chr1_1:6758898-6758917 None:intergenic 50.0%
AGGGATGGCAATGAGGATGA+TGG - chr1_1:6758899-6758918 None:intergenic 50.0%
CGGATTTAGGGATGGCAATG+AGG - chr1_1:6758906-6758925 None:intergenic 50.0%
CAGTAGGTAAATCACTGGGC+TGG - chr1_1:6759123-6759142 None:intergenic 50.0%
CAGCCCAGTGATTTACCTAC+TGG + chr1_1:6759121-6759140 Msa0004340:CDS 50.0%
! GGTGTGTGTTTTGCATCTGG+TGG + chr1_1:6759142-6759161 Msa0004340:CDS 50.0%
!! TGTTTTGCATCTGGTGGTGC+TGG + chr1_1:6759148-6759167 Msa0004340:CDS 50.0%
! CCAGCAGCTGTTCTCTGAAA+TGG - chr1_1:6759990-6760009 None:intergenic 50.0%
CCATTTCAGAGAACAGCTGC+TGG + chr1_1:6759987-6760006 Msa0004340:intron 50.0%
TTTCAGAGAACAGCTGCTGG+AGG + chr1_1:6759990-6760009 Msa0004340:intron 50.0%
!! ACCCACTTAGGTTAGTCTGG+TGG - chr1_1:6760456-6760475 None:intergenic 50.0%
!! GATAAAGGGTGTTGTGGCAC+GGG + chr1_1:6761450-6761469 Msa0004340:CDS 50.0%
TTGTGGCACGGGCATAATTG+AGG + chr1_1:6761461-6761480 Msa0004340:CDS 50.0%
CATGCATGCTGTCTTGTGAG+AGG + chr1_1:6761649-6761668 Msa0004340:intron 50.0%
!! GCTTTAGCCTTGAGGTGAGG+TGG - chr1_1:6758321-6758340 None:intergenic 55.0%
CCTCACCTCAAGGCTAAAGC+CGG + chr1_1:6758321-6758340 Msa0004340:intron 55.0%
!! AAGGACCGGCTTTAGCCTTG+AGG - chr1_1:6758329-6758348 None:intergenic 55.0%
CTGAGTGTCCATAAGGCACG+AGG - chr1_1:6758449-6758468 None:intergenic 55.0%
CTCGTGCCTTATGGACACTC+AGG + chr1_1:6758447-6758466 Msa0004340:intron 55.0%
!! GGCAATGAGGATGATGGGTG+GGG - chr1_1:6758893-6758912 None:intergenic 55.0%
GAGCTAGGTGCAAGGAGGAT+TGG + chr1_1:6759933-6759952 Msa0004340:intron 55.0%
!! CCGGCTTTAGCCTTGAGGTG+AGG - chr1_1:6758324-6758343 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6757087 6761920 6757087 ID=Msa0004340;Name=Msa0004340
chr1_1 mRNA 6757087 6761920 6757087 ID=Msa0004340-mRNA-1;Parent=Msa0004340;Name=Msa0004340-mRNA-1;_AED=0.20;_eAED=0.20;_QI=135|0.8|0.66|1|0.8|0.66|6|261|332
chr1_1 exon 6757087 6757507 6757087 ID=Msa0004340-mRNA-1:exon:2311;Parent=Msa0004340-mRNA-1
chr1_1 exon 6759068 6759198 6759068 ID=Msa0004340-mRNA-1:exon:2312;Parent=Msa0004340-mRNA-1
chr1_1 exon 6759327 6759533 6759327 ID=Msa0004340-mRNA-1:exon:2313;Parent=Msa0004340-mRNA-1
chr1_1 exon 6759996 6760179 6759996 ID=Msa0004340-mRNA-1:exon:2314;Parent=Msa0004340-mRNA-1
chr1_1 exon 6761436 6761641 6761436 ID=Msa0004340-mRNA-1:exon:2315;Parent=Msa0004340-mRNA-1
chr1_1 exon 6761675 6761920 6761675 ID=Msa0004340-mRNA-1:exon:2316;Parent=Msa0004340-mRNA-1
chr1_1 five_prime_UTR 6757087 6757221 6757087 ID=Msa0004340-mRNA-1:five_prime_utr;Parent=Msa0004340-mRNA-1
chr1_1 CDS 6757222 6757507 6757222 ID=Msa0004340-mRNA-1:cds;Parent=Msa0004340-mRNA-1
chr1_1 CDS 6759068 6759198 6759068 ID=Msa0004340-mRNA-1:cds;Parent=Msa0004340-mRNA-1
chr1_1 CDS 6759327 6759533 6759327 ID=Msa0004340-mRNA-1:cds;Parent=Msa0004340-mRNA-1
chr1_1 CDS 6759996 6760179 6759996 ID=Msa0004340-mRNA-1:cds;Parent=Msa0004340-mRNA-1
chr1_1 CDS 6761436 6761626 6761436 ID=Msa0004340-mRNA-1:cds;Parent=Msa0004340-mRNA-1
chr1_1 three_prime_UTR 6761627 6761641 6761627 ID=Msa0004340-mRNA-1:three_prime_utr;Parent=Msa0004340-mRNA-1
chr1_1 three_prime_UTR 6761675 6761920 6761675 ID=Msa0004340-mRNA-1:three_prime_utr;Parent=Msa0004340-mRNA-1
Gene Sequence

>Msa0004340

ATGCTAGTATATATTATGGTTCCTTTAATGAATTCCCTTTCTTTTTTTCTCCATTTCATAATAATATTACTTGTTGCATGTAAAACAAAGGGTATAGTCCAACTTCCACCAAATGTTTCAGTTCCAGCAGTGTTGGTGTTTGGAGATTCTATCGTGGATACAGGTAACAATAACAACAATTTGAGAACAACAGCTCGTTGCAATTTTCCACCTTATGGGAAAGATTTCAAAGGAGGGATTCCAACAGGAAGATTTAGCAATGGAAAAGTTCCCTCAGACTTCATAGTTGAAGAATTAGGCATTAAAGAATTTCTACCAGCATACTTGGATCCAAATCTCCAGCCCAGTGATTTACCTACTGGTGTGTGTTTTGCATCTGGTGGTGCTGGATTTGATCCTTTGACATCTCAAACTGCGTCAGCAATATCATTATCTGGCCAACTAGATTTGTTCAAAGAATACATAGGAAAATTAAGAGGACTTGTTGGAGAAGACAGAACAAACTTCATCTTGGCAAATAGTCTTTTCCTTGTGGTATTGGGCAGTAATGATATTTCCAACACATATTTCTTGTCTCGCATTAGACAATTCCAGTATGATTTTCCTGATTATGCTGATCTTATGAGAACAGCTGCTGGAGGAATAGAAAGAAGAATTGTAGTTGAATACAATGAAGCAGTAGAATTATACAACAGCAAATTGTCAAAGGGGTTAGCTTCCTTTAACCAGAATTATCCAAACAGCAGGATTGTTTACATTGATGTCTATAACCCTCTGCTTGACATCATTGTAAACTCTAATAAATATGGATATAAAGTGGAAGATAAAGGGTGTTGTGGCACGGGCATAATTGAGGTTGTGTTGTTATGCAACCATTTGTCTTCTACGTGTCCAAATGATATGGAGTTTGTCTTTTGGGATAGTTTTCATCCAACTGAAAGTGTTTACAAAAGGCTCATAGCTCCTATTATCCAAAAATACGTCAACGATTTCATGTGA
Protein sequence

>Msa0004340

MLVYIMVPLMNSLSFFLHFIIILLVACKTKGIVQLPPNVSVPAVLVFGDSIVDTGNNNNNLRTTARCNFPPYGKDFKGGIPTGRFSNGKVPSDFIVEELGIKEFLPAYLDPNLQPSDLPTGVCFASGGAGFDPLTSQTASAISLSGQLDLFKEYIGKLRGLVGEDRTNFILANSLFLVVLGSNDISNTYFLSRIRQFQYDFPDYADLMRTAAGGIERRIVVEYNEAVELYNSKLSKGLASFNQNYPNSRIVYIDVYNPLLDIIVNSNKYGYKVEDKGCCGTGIIEVVLLCNHLSSTCPNDMEFVFWDSFHPTESVYKRLIAPIIQKYVNDFM*