AlfalfaGEDB | Msa0713350

M. sativa cultivar zhongmu-4 / Msa0713350

KEGG: K11420
GO: GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0006325 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008327 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010428 GO:0010429 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019219 GO:0019222 GO:0019538 GO:0031047 GO:0031048 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0036094 GO:0036211 GO:0040029 GO:0042054 GO:0042221 GO:0042493 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713350	XP_013453447.1	96.511	1089	37	1	1	1088	1	1089	0.0	2154

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713350	sp\|Q8VZ17\|SUVH6_ARATH	64.054	523	171	8	581	1088	270	790	0.0	664

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713350	A0A072UEG5	96.511	1089	37	1	1	1088	1	1089	0.0	2154

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TFs/TRs:

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Gene ID	Type	Classification
Msa0713350	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000590	Msa0713350	0.843271	1.552948e-58	-8.615850e-47
Msa0008220	Msa0713350	0.834768	2.476012e-56	-8.615850e-47
Msa0015460	Msa0713350	0.809396	1.931649e-50	-8.615850e-47
Msa0017320	Msa0713350	0.805406	1.355679e-49	-8.615850e-47
Msa0036370	Msa0713350	0.825812	3.821789e-54	-8.615850e-47
Msa0057370	Msa0713350	0.837926	3.896812e-57	-8.615850e-47
Msa0058610	Msa0713350	0.803961	2.714550e-49	-8.615850e-47
Msa0065650	Msa0713350	0.818778	1.641017e-52	-8.615850e-47
Msa0070170	Msa0713350	0.800569	1.355415e-48	-8.615850e-47
Msa0076780	Msa0713350	0.821565	3.774249e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713350	MtrunA17_Chr5g0399801	96.419	1089	38	1	1	1088	1	1089	0.0	2152
Msa0713350	MtrunA17_Chr4g0003501	71.884	1067	187	10	23	1088	1	955	0.0	1446
Msa0713350	MtrunA17_Chr4g0003511	69.843	1081	210	12	23	1088	73	1052	0.0	1408
Msa0713350	MtrunA17_Chr7g0232811	44.090	533	211	10	576	1088	74	539	2.85e-131	409
Msa0713350	MtrunA17_Chr8g0354821	39.761	586	305	14	532	1085	116	685	7.69e-125	397
Msa0713350	MtrunA17_Chr3g0080761	41.111	540	296	14	567	1087	127	663	1.19e-122	391
Msa0713350	MtrunA17_Chr7g0252211	42.553	517	261	13	603	1088	246	757	1.97e-118	382
Msa0713350	MtrunA17_Chr6g0476121	42.604	507	258	11	611	1088	141	643	7.00e-118	377
Msa0713350	MtrunA17_Chr7g0232981	42.105	532	212	11	570	1088	68	516	1.47e-117	372
Msa0713350	MtrunA17_Chr6g0476111	41.811	519	265	12	603	1088	180	694	2.17e-115	372

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0713350	AT2G22740.2	64.054	523	171	8	581	1088	270	790	0.0	664
Msa0713350	AT2G22740.1	64.054	523	171	8	581	1088	270	790	0.0	664
Msa0713350	AT2G35160.2	61.047	516	167	5	580	1088	306	794	0.0	652
Msa0713350	AT2G35160.3	61.047	516	167	5	580	1088	306	794	0.0	652
Msa0713350	AT2G35160.1	61.047	516	167	5	580	1088	306	794	0.0	652
Msa0713350	AT2G35160.4	61.047	516	167	5	580	1088	306	794	0.0	652
Msa0713350	AT2G35160.5	61.047	516	167	5	580	1088	270	758	0.0	651
Msa0713350	AT5G04940.2	41.459	521	285	14	581	1087	155	669	1.71e-119	383
Msa0713350	AT5G04940.1	41.459	521	285	14	581	1087	155	669	1.71e-119	383
Msa0713350	AT5G13960.1	40.255	549	283	13	570	1088	91	624	9.28e-117	374

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Find 269 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTTACATAACCACG+TGG	0.753070	5_1:+5502720	None:intergenic
AAAACCAAGTCAATGGGATG+GGG	0.578324	5_1:-5501628	Msa0713350:CDS
AAAACTGACATTGGTGGGCA+TGG	0.507583	5_1:-5503726	Msa0713350:CDS
AAAACTGCGACCAAGTCCAA+AGG	0.643866	5_1:-5502885	Msa0713350:CDS
AAAAGTGGAATTGGTGGGCA+TGG	0.537948	5_1:-5503858	Msa0713350:CDS
AAAAGTGTCCCAAAACCACG+TGG	0.710733	5_1:-5502735	Msa0713350:CDS
AAAATCAGCTTCAACAAAGT+TGG	0.420516	5_1:+5503232	None:intergenic
AAAGCTTTCTACAAACAGCT+TGG	0.545465	5_1:+5502616	None:intergenic
AAAGGCTGTAATTGTACTAA+TGG	0.324470	5_1:-5501835	Msa0713350:CDS
AAAGGGAGCTATGTTAATGA+AGG	0.510173	5_1:-5502510	Msa0713350:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAATTGATGAGTCTACTT+TGG	-	chr5_1:5501899-5501918	Msa0713350:CDS	30.0%
GATATGGAATTTACAACAGA+AGG	-	chr5_1:5501969-5501988	Msa0713350:CDS	30.0%
TTGTCCAATATCAATATAGG+TGG	-	chr5_1:5502077-5502096	Msa0713350:CDS	30.0%
AATATCAATATAGGTGGTTC+CGG	-	chr5_1:5502083-5502102	Msa0713350:CDS	30.0%
AAAATCAGCTTCAACAAAGT+TGG	+	chr5_1:5502303-5502322	None:intergenic	30.0%
TAATCATCATCAGGTTAAAG+TGG	-	chr5_1:5502388-5502407	Msa0713350:CDS	30.0%
AGAATGATTTAGTACACCTT+TGG	+	chr5_1:5502666-5502685	None:intergenic	30.0%
AAGGTGTACTAAATCATTCT+GGG	-	chr5_1:5502666-5502685	Msa0713350:CDS	30.0%
AAAACATTTACATAACCACG+TGG	+	chr5_1:5502815-5502834	None:intergenic	30.0%
CAAATGTGAAAGAATCAAAG+AGG	-	chr5_1:5502966-5502985	Msa0713350:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	5501144	5504410	5501144	ID=Msa0713350;Name=Msa0713350
chr5_1	mRNA	5501144	5504410	5501144	ID=Msa0713350-mRNA-1;Parent=Msa0713350;Name=Msa0713350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1088
chr5_1	exon	5501144	5504410	5501144	ID=Msa0713350-mRNA-1:exon:2441;Parent=Msa0713350-mRNA-1
chr5_1	CDS	5501144	5504410	5501144	ID=Msa0713350-mRNA-1:cds;Parent=Msa0713350-mRNA-1

Gene Sequence

>Msa0713350

ATGAATTCGGAGCCATCAATGTTGGTTTGTGATGAACATTCTGAAGAAGAATTAGGGAAGCCAGTGATGGTAAATGGAGGCTCAACTATTGTTGATCCGCCTAAGTTTAAGCGTCGGAAAGTTTCTGCTGTTCGTGATTTTCCGGAAGAATGTGGACCGTTTGGTTCTGCTGACGGTACGAGTGTTGAGGTTAAGAGTGGTGAAGATTTAGGTGGTGGTGATTCGGGTGAAGCTGATAGTCCCAACGACGAAAAGGATCCTCAAAATTTTGAGTTCAATGAAGATTTGTTTGTTGCAGACACTGTTGAACAAACAAGTGGCTGTAGTTTGAAGAAGGAGGATCCTGTGGTCTTATCTGATCAAGTGGATGTGGGTAGTTTTGCCAACGATGAACCTGCAAAAGTGGTATTGGTGGGCGTAGAAGCTATGGATATTAGTTTTGAAACTGAAGACTGTAGCTTGAAAAAGGAAGATCCTGTGGTCTCATCTCATCAAGTGGATGGGGATATTTTGGTTAACGATGAAGCTTCAAAAGTGGAATTGGTGGGCATGGAAGCTGTGGATATGGAATTGGAAACTGAAGACTGTAGCTTGAGAAAGGAAGATCCCATGGTCTCATCTCATCAATTGGATGTGCCTATTTTGGATAATAACGAAGATACAAAACTGACATTGGTGGGCATGGAGACTTTGGATGCGGAATTGGCAACTGAAAGCTGTAGTTTGAAGAACGAAAATGCAGCGATCTTATCTTATCAAATTGATGAGTCTACTTTGGCAAATGACGGACCTGCAGAACTGGCATTGGTCGGTATGGAAACTTCAGATATGGAATTTACAACAGAAGGCTCCGTAAAACAAGATTTATCTTATATATCAGAGGCACCGGCTCCAGTTGGCGAGGTAGCTATGTCTGATAACTCAAAATCCTCATTGTCCAATATCAATATAGGTGGTTCCGGTGCTTGTATGAAGGAGGCTTTAACTAAAAGGTATCCTCCTCGTAAAAAAGTTGCAGCGTTAAGAGATTTTCCACGTTTATGTGGACGCAATGCTCCCCGTCTCAGCCAGGATGAGTGTCTAAAGGAGCTCGCTTCTTTGAAAGAAGTTGCAGCTACTGACCTACAAGAAGCAGAAAATAACAAAAGAAAGTTTGCCAACTTTGTTGAAGCTGATTTTGAAGGGAATGCGGTCAAGAAGCTGGATGTAGCTGAACCATCTACTGAGATGAGATTGGCACTGGATAATCATCATCAGGTTAAAGTGGAAAACATGAACATCGTTAAGGTCGAGGGAACATCAGAGCTAGATATTGATTACCCAGAACTCGAAAGTAGTTTGAAGGTCTCACCAGGCAGGAAAGTAGTGCTAGGTTTGATGGCCAAGTCAGAATGTCCTTGGGGATCTGATATTTGTTCCCCCAAATTTAAACCAACATCCATTGGTGGTACAGATGACAGGAAGGGAAAGAAAGTTGATTTTTATGCCCACCTGGACAGGTCTAAAACTGCGACCAAGTCCAAAGGTGTACTAAATCATTCTGGGCACCAGCCGTTGAAAAAGAAAAGAGAAAATTCTAGTTCTGATGACATGGGTCAATTAGTAACACGGGAGAAGAATTCTCTAGATCCTAATGAAAATAACAAACACTTTAAAAGTGTCCCAAAACCACGTGGTTATGTAAATGTTTTTCCTCTTGGTCGTAGTAATTTAAGTGGTCATGAGAGTGACTCAGTGGCCCGGAATAAAGTGAGGAAAACATTGCGCCTGTTCCAAGCTGTTTGTAGAAAGCTTTTGCAGGAAGCGGAAGCAAAACCAAAGTCAAATGTGAAAGAATCAAAGAGGGTTGATTTACAAGCTTCAAAAATACTTAAGGAGAAAGGGAGCTATGTTAATGAAGGGGAGAAGATCATGGGATCTGTTCCTGGGGTTGAAGTTGGTGATGAATTTCAATACAGAATAGAGCTTAATATAATTGGCCTTCATCGCCAGATTCAGGGTGGTATAGATTATATGAAGCAAAAAAACAAGGTCCTTGCAACTAGTATTGTTGCTTCCGGGGGCTATGCTGATGACTTAGATAATGCAGATGTTTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCAGTGATAAAGAGCCAGAAGATCAGAAGCTTGAACGGGGCAATCTTGCTTTGAAGAATAGTAGCGAGGTCAAGAATTCTGTTAGGGTGATACGGGGATCTGAATCAGCGGATGGAAAAAGCAAGATATATGTTTACGATGGACTCTATGAAGTTGAGTCATATTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAAGTTTCGCTTGCGAAGAAAGCCGGGTCAACCAGAGCTTGCTTGGAAGGTACTGAAGAAATCTAAAAAGTTCAAAAAAAGAGAAGGTGTACGCGTTGAAGATATTTCCTACGGGAAAGAGAAAATTCCCATATGTGCTGTGAACACCATAGATGAAGAGAACCCCCCTCCATTTAAATACATAACTAAGATGATGTATCCTGATTGTTGCAATATTGTCCCTCCAAAAGGCTGTAATTGTACTAATGGATGCTCTGACCACGAGAAATGTTCTTGTGTACTCAAAAATGGGGGGGAGATTCCATTTAATCATAATGGAGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGGCCTAAATGCAAGTGCCCTCCAACTTGTTATAATAGAGTCAGCCAACTTGGCATAAATATTCAACTCGAAATTTTTAAAACCAAGTCAATGGGATGGGGTGTAAGATCCTTGAATTCCATCCCTTCTGGAAGTTTTATCTGTGAATATATTGGAGAGGTTCTTGAGGACAAGGAAGCTGAACAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACAAAAACAACAGTAATCTTTGGGATGGACTTTCGAACCTTTTGCCAGATTCGCACTCAAGTTCAAGTGAAGTAGTGAATGATGTTGGCTTCACTATCGATGCCGCTCAGTTCGGTAATGTAGGGAGATTCATTAACCATAGTTGCTCCCCCAATCTCTATGCCCAGAATGTCCTTTATGATCACCATGACAACAGGGTTCCTCATGTCATGTTATTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGACTTACGATTACAATTACACGATAGATCAAGTTCGTGATTCCGATGGCAATATCAAAAAGAAATACTGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGTTGTATTGA

Protein sequence

>Msa0713350

MNSEPSMLVCDEHSEEELGKPVMVNGGSTIVDPPKFKRRKVSAVRDFPEECGPFGSADGTSVEVKSGEDLGGGDSGEADSPNDEKDPQNFEFNEDLFVADTVEQTSGCSLKKEDPVVLSDQVDVGSFANDEPAKVVLVGVEAMDISFETEDCSLKKEDPVVSSHQVDGDILVNDEASKVELVGMEAVDMELETEDCSLRKEDPMVSSHQLDVPILDNNEDTKLTLVGMETLDAELATESCSLKNENAAILSYQIDESTLANDGPAELALVGMETSDMEFTTEGSVKQDLSYISEAPAPVGEVAMSDNSKSSLSNINIGGSGACMKEALTKRYPPRKKVAALRDFPRLCGRNAPRLSQDECLKELASLKEVAATDLQEAENNKRKFANFVEADFEGNAVKKLDVAEPSTEMRLALDNHHQVKVENMNIVKVEGTSELDIDYPELESSLKVSPGRKVVLGLMAKSECPWGSDICSPKFKPTSIGGTDDRKGKKVDFYAHLDRSKTATKSKGVLNHSGHQPLKKKRENSSSDDMGQLVTREKNSLDPNENNKHFKSVPKPRGYVNVFPLGRSNLSGHESDSVARNKVRKTLRLFQAVCRKLLQEAEAKPKSNVKESKRVDLQASKILKEKGSYVNEGEKIMGSVPGVEVGDEFQYRIELNIIGLHRQIQGGIDYMKQKNKVLATSIVASGGYADDLDNADVLIYTGQGGNVMSSDKEPEDQKLERGNLALKNSSEVKNSVRVIRGSESADGKSKIYVYDGLYEVESYWQDMGPHGKLVYKFRLRRKPGQPELAWKVLKKSKKFKKREGVRVEDISYGKEKIPICAVNTIDEENPPPFKYITKMMYPDCCNIVPPKGCNCTNGCSDHEKCSCVLKNGGEIPFNHNGAIVEAKPLVYECGPKCKCPPTCYNRVSQLGINIQLEIFKTKSMGWGVRSLNSIPSGSFICEYIGEVLEDKEAEQRTGNDEYLFDIGNNKNNSNLWDGLSNLLPDSHSSSSEVVNDVGFTIDAAQFGNVGRFINHSCSPNLYAQNVLYDHHDNRVPHVMLFAAENIPPLQELTYDYNYTIDQVRDSDGNIKKKYCFCGSVECTGRLY*