AlfalfaGEDB | Msa0698060

M. sativa cultivar zhongmu-4 / Msa0698060

KEGG: K14769
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904
PFAM: PF03998.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698060	XP_013457257.1	91.266	229	6	1	1	215	1	229	7.28e-146	415

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698060	sp\|Q8S1Z1\|UTP11_ORYSJ	64.192	229	68	1	1	215	1	229	1.29e-99	291

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698060	B7FKL3	91.266	229	6	1	1	215	1	229	3.48e-146	415

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001790	Msa0698060	0.802591	5.216214e-49	-8.615850e-47
Msa0002490	Msa0698060	0.824864	6.407711e-54	-8.615850e-47
Msa0004980	Msa0698060	0.800688	1.281594e-48	-8.615850e-47
Msa0006290	Msa0698060	0.828527	8.555223e-55	-8.615850e-47
Msa0011960	Msa0698060	0.810031	1.410577e-50	-8.615850e-47
Msa0025730	Msa0698060	0.861655	8.806284e-64	-8.615850e-47
Msa0027260	Msa0698060	0.805620	1.222641e-49	-8.615850e-47
Msa0032260	Msa0698060	0.851673	7.616676e-61	-8.615850e-47
Msa0032580	Msa0698060	0.823553	1.301652e-53	-8.615850e-47
Msa0040690	Msa0698060	0.837366	5.423934e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698060	MtrunA17_Chr4g0051081	91.266	229	6	1	1	215	1	229	6.69e-150	415

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0698060	AT3G60360.1	58.079	229	81	2	1	215	1	228	1.18e-91	268

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Find 56 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCTAATAGAAACG+AGG	0.712242	4_4:-68195448	Msa0698060:CDS
AAAGCTTCAAAGTGAGAAAA+AGG	0.290672	4_4:-68194614	Msa0698060:intron
AAGTAAACATGCTTGTTCGC+TGG	0.531696	4_4:+68194446	None:intergenic
AAGTAGTTAGTTACATACAC+TGG	0.632112	4_4:+68195372	None:intergenic
ACGCTCTTTGTGAGCAGGTC+TGG	0.296864	4_4:+68195757	None:intergenic
ACGGTGATTTCTACGGTGGA+GGG	0.559484	4_4:+68195825	None:intergenic
AGAGAAAGTCTACATGGATA+TGG	0.427839	4_4:-68189293	Msa0698060:CDS
AGGTCTTGGAGGAAGAAATT+CGG	0.388099	4_4:-68195647	Msa0698060:CDS
AGTGTCTTCTTTCACATGAA+AGG	0.479919	4_4:+68195583	None:intergenic
ATATTCCTGATAATATTAAA+AGG	0.347552	4_4:-68190538	Msa0698060:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCACCAAGATTAAAATTATC+AGG	+	chr4_4:68188792-68188811	None:intergenic	30.0%
TCTCCATTATTATTAGGTCT+TGG	-	chr4_4:68189043-68189062	Msa0698060:three_prime_UTR	30.0%
ATGTGAAAGAAGACACTTTA+CGG	-	chr4_4:68189127-68189146	Msa0698060:CDS	30.0%
AGTGAAATATTGCAGAGAAA+GGG	+	chr4_4:68189173-68189192	None:intergenic	30.0%
AAGTGAAATATTGCAGAGAA+AGG	+	chr4_4:68189174-68189193	None:intergenic	30.0%
AAGTAGTTAGTTACATACAC+TGG	+	chr4_4:68189335-68189354	None:intergenic	30.0%
CAATAGATAAGCTTCAAACA+TGG	-	chr4_4:68189550-68189569	Msa0698060:intron	30.0%
ATGCTATAAGCTGCAAATTA+AGG	+	chr4_4:68189744-68189763	None:intergenic	30.0%
ATAAAAATCAAGGGTCTGTT+TGG	+	chr4_4:68189954-68189973	None:intergenic	30.0%
ACTAGCCACATAAAAATCAA+GGG	+	chr4_4:68189963-68189982	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	68188773	68195953	68188773	ID=Msa0698060;Name=Msa0698060
chr4_4	mRNA	68188773	68195953	68188773	ID=Msa0698060-mRNA-1;Parent=Msa0698060;Name=Msa0698060-mRNA-1;_AED=0.12;_eAED=0.12;_QI=149\|0.85\|0.75\|1\|1\|1\|8\|316\|215
chr4_4	exon	68188773	68189181	68188773	ID=Msa0698060-mRNA-1:exon:20286;Parent=Msa0698060-mRNA-1
chr4_4	exon	68189273	68189372	68189273	ID=Msa0698060-mRNA-1:exon:20285;Parent=Msa0698060-mRNA-1
chr4_4	exon	68190539	68190622	68190539	ID=Msa0698060-mRNA-1:exon:20284;Parent=Msa0698060-mRNA-1
chr4_4	exon	68194434	68194513	68194434	ID=Msa0698060-mRNA-1:exon:20283;Parent=Msa0698060-mRNA-1
chr4_4	exon	68194615	68194662	68194615	ID=Msa0698060-mRNA-1:exon:20282;Parent=Msa0698060-mRNA-1
chr4_4	exon	68195386	68195481	68195386	ID=Msa0698060-mRNA-1:exon:20281;Parent=Msa0698060-mRNA-1
chr4_4	exon	68195577	68195667	68195577	ID=Msa0698060-mRNA-1:exon:20280;Parent=Msa0698060-mRNA-1
chr4_4	exon	68195749	68195953	68195749	ID=Msa0698060-mRNA-1:exon:20279;Parent=Msa0698060-mRNA-1
chr4_4	five_prime_UTR	68195805	68195953	68195805	ID=Msa0698060-mRNA-1:five_prime_utr;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68195749	68195804	68195749	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68195577	68195667	68195577	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68195386	68195481	68195386	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68194615	68194662	68194615	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68194434	68194513	68194434	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68190539	68190622	68190539	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68189273	68189372	68189273	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	CDS	68189089	68189181	68189089	ID=Msa0698060-mRNA-1:cds;Parent=Msa0698060-mRNA-1
chr4_4	three_prime_UTR	68188773	68189088	68188773	ID=Msa0698060-mRNA-1:three_prime_utr;Parent=Msa0698060-mRNA-1

Gene Sequence

>Msa0698060

ATGTCTTCTCTGAGAAACGCCGTTCCCAGACCTGCTCACAAAGAGCGTCCTCAACCGTCTTGGAGGAAGAAATTCGGGATACTCGAAAAGCACAAAGACTATGTCGAACGTGCTAAAGCCTTTCATGTGAAAGAAGACACTTTACGGGTACTTAGGGAAAAAGCTGCTAATAGAAACGAGGATGAGTTTTATTTTAAGATGGTTAATTCAAAAACTGTTGATGGAGTTCATAGACCAGTGTATACACAAGATATGGGATATGTTCTTCAAAAGCTTCAAAGTGAGAAAAAGAAAGTTGAAAAGCTATCTGCCAATTTGCACTTGATTGATCATAAGCCAGCGAACAAGCATGTTTACTTTGCTGACGACAGGGAAGAGGCTAAAGAGTTAAAGCAACAACTGTCAAAAAGAAAAGTTCCATCCACTTCTGACAATATTCCTGATAATATTAAAAGGAAAACAGAACGATCTTACAAAGAGTTGCAAGCAAGGAAAGCTAGAGTCAGCCAGCTAGAGAAAGTCTACATGGATATGGCACTGAAGAAGGAGTTGCAGAAAAATGGTAGGAAGCGCAAACTTCGCGAAGATGAAATCGTCAACCCAACCGGTAGACCGGTATACAAGTGGCGTGCTGAAAGAAAGCGCTGA

Protein sequence

>Msa0698060

MSSLRNAVPRPAHKERPQPSWRKKFGILEKHKDYVERAKAFHVKEDTLRVLREKAANRNEDEFYFKMVNSKTVDGVHRPVYTQDMGYVLQKLQSEKKKVEKLSANLHLIDHKPANKHVYFADDREEAKELKQQLSKRKVPSTSDNIPDNIKRKTERSYKELQARKARVSQLEKVYMDMALKKELQKNGRKRKLREDEIVNPTGRPVYKWRAERKR*