AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726830 MtrunA17_Chr5g0418911 98.907 366 4 0 1 366 1 366 0.0 735
Msa0726830 MtrunA17_Chr1g0212851 36.675 379 190 8 24 366 83 447 1.75e-69 224
Msa0726830 MtrunA17_Chr8g0369371 46.023 176 92 3 22 196 57 230 2.80e-43 150
Msa0726830 MtrunA17_Chr8g0369381 40.816 98 56 1 265 362 61 156 3.19e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726830 AT1G26520.1 72.853 361 92 2 4 361 13 370 0.0 539
Msa0726830 AT1G15730.1 38.544 371 185 7 24 362 86 445 4.27e-76 242
Msa0726830 AT1G80480.1 37.435 382 197 7 12 362 71 441 5.20e-74 236

Find 90 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAAAGTAACATGTTAAT+TGG 0.083650 5_1:-28348480 None:intergenic
GTCTTCATCGTGTTCCATTT+TGG 0.184628 5_1:-28342444 None:intergenic
AATAAATTAACACACTAATT+TGG 0.196004 5_1:-28348212 None:intergenic
CACCTTTGGCATCTATTCTT+TGG 0.207860 5_1:+28343994 Msa0726830:CDS
ATTAAAGTAACATGTTAATT+GGG 0.273975 5_1:-28348479 None:intergenic
AATGAGTTTGGTGAGGAAAT+TGG 0.300166 5_1:+28343326 Msa0726830:CDS
CTACGAGTGTGTTAATGTTA+TGG 0.302882 5_1:-28344969 None:intergenic
ACACATCAACTCCTCCAAAA+TGG 0.316843 5_1:+28342430 Msa0726830:exon
TATGGCTAGAGGAGATTCTT+TGG 0.317773 5_1:+28345655 Msa0726830:CDS
TGATGAATTGCATACTTTGC+AGG 0.320221 5_1:+28345737 Msa0726830:CDS
ATGAATAAGATAGTATTTAT+AGG 0.327529 5_1:+28347984 Msa0726830:CDS
AATTCTTAACAAGGTTGATT+TGG 0.330079 5_1:+28344900 Msa0726830:CDS
TTGGGAGAAGAAATATGATA+TGG 0.330619 5_1:+28345674 Msa0726830:CDS
AACAGAAGATTGTTGAGAAA+TGG 0.344084 5_1:-28342516 None:intergenic
TTTGGCTAATCCAGCACCTT+TGG 0.352272 5_1:+28343980 Msa0726830:CDS
GAGCTTTCAAGCCATTGATT+AGG 0.361287 5_1:-28348110 None:intergenic
AAACAAATACGCAGCCTAAC+AGG 0.366244 5_1:-28348139 None:intergenic
TCTCCAACACCCACTCTTGT+TGG 0.367777 5_1:+28348563 Msa0726830:three_prime_UTR
GCTGTGATATTGAATGAGTT+TGG 0.371555 5_1:+28343314 Msa0726830:CDS
GCTATCTGAAAATATGCTTC+AGG 0.372809 5_1:-28344525 None:intergenic
CGCGTCCTACACTTTGGAAA+TGG 0.373940 5_1:+28348598 Msa0726830:three_prime_UTR
ACTCTCATCACTGGTTATCT+TGG 0.383465 5_1:+28342545 Msa0726830:CDS
AACCATGGCAGACTCGTATA+TGG 0.384207 5_1:+28345637 Msa0726830:intron
CAGTAGCTTCCAGCAATATA+TGG 0.413428 5_1:-28343956 None:intergenic
TTTGGCATCTATTCTTTGGT+TGG 0.414831 5_1:+28343998 Msa0726830:CDS
TTCTCTGCACAAGCTGCTCA+AGG 0.418476 5_1:-28343460 None:intergenic
TAGGCTAGACCATATATTGC+TGG 0.419326 5_1:+28343947 Msa0726830:intron
AGAATAGATGCCAAAGGTGC+TGG 0.420889 5_1:-28343990 None:intergenic
TTGGTATCTGCAGAAGGCTC+TGG 0.429405 5_1:+28344919 Msa0726830:CDS
AGTGGAAGAAAGAAGAAAAC+AGG 0.433205 5_1:+28347961 Msa0726830:CDS
ATGGCTAGAGGAGATTCTTT+GGG 0.440901 5_1:+28345656 Msa0726830:CDS
TTGCACGGTTAAGCATAGTT+TGG 0.445784 5_1:+28343430 Msa0726830:CDS
ATTGCTGGAAGCTACTGGTT+TGG 0.456630 5_1:+28343962 Msa0726830:CDS
ATCACTGGTTATCTTGGTGC+TGG 0.459836 5_1:+28342551 Msa0726830:CDS
TCCTGTCTCACAGATGCATA+TGG 0.462060 5_1:-28345230 None:intergenic
GAAAGAGCATTGATAAATGA+AGG 0.462576 5_1:+28343353 Msa0726830:CDS
GAAAGCTCTTGCAACCTGTT+AGG 0.464002 5_1:+28348125 Msa0726830:CDS
AACTCAACATTGATGAATCA+AGG 0.464542 5_1:-28348450 None:intergenic
AAAGAAGATGTCCTAATCAA+TGG 0.473604 5_1:+28348099 Msa0726830:CDS
CATATATTGCTGGAAGCTAC+TGG 0.474771 5_1:+28343957 Msa0726830:CDS
TGCGTATTTGTTTCCTTGTG+TGG 0.476019 5_1:+28348149 Msa0726830:three_prime_UTR
AGCCACGGTGCTCCTTGAGC+TGG 0.477134 5_1:-28344491 None:intergenic
GTGGTGCAGTTGTTGAAGAA+TGG 0.477782 5_1:+28343381 Msa0726830:CDS
TCTTTGGTTGGATGAACAGT+TGG 0.479469 5_1:+28344010 Msa0726830:CDS
GTAGTGTTGTGTTAGTTACT+AGG 0.479845 5_1:+28348263 Msa0726830:three_prime_UTR
GTTGGTGTCACTCTCATCAC+TGG 0.482192 5_1:+28342536 Msa0726830:CDS
TGGTGCAGTTGTTGAAGAAT+GGG 0.484968 5_1:+28343382 Msa0726830:CDS
TCTTTCTTCCACTTTCGAGC+AGG 0.486547 5_1:-28347951 None:intergenic
GCGTATTTGTTTCCTTGTGT+GGG 0.493778 5_1:+28348150 Msa0726830:three_prime_UTR
TTAAAGTAACATGTTAATTG+GGG 0.496983 5_1:-28348478 None:intergenic
AGATCGTTCCTGCTCGAAAG+TGG 0.500025 5_1:+28347943 Msa0726830:CDS
GAATGGGTTGAACTTGCTAA+TGG 0.500533 5_1:+28343398 Msa0726830:CDS
ACCATATGCATCTGTGAGAC+AGG 0.503064 5_1:+28345229 Msa0726830:CDS
ATTTCTCAACAATCTTCTGT+TGG 0.503553 5_1:+28342518 Msa0726830:CDS
TCAATGCGCGTCCTACACTT+TGG 0.508215 5_1:+28348592 Msa0726830:three_prime_UTR
AGGAACAGTTGATCTTGATA+AGG 0.543424 5_1:+28345249 Msa0726830:CDS
TCTCTGCACAAGCTGCTCAA+GGG 0.549355 5_1:-28343459 None:intergenic
TGAACTCTCAACATGGGAAG+AGG 0.549391 5_1:+28343288 Msa0726830:CDS
AAATGTTCGCTTCCAGCTCA+AGG 0.553773 5_1:+28344479 Msa0726830:CDS
TTGATAAATGAAGGGGAAAG+TGG 0.553774 5_1:+28343362 Msa0726830:CDS
CATATATTGAACTCTCAACA+TGG 0.555523 5_1:+28343281 Msa0726830:CDS
TTGATTTAAACCAACAAGAG+TGG 0.565582 5_1:-28348573 None:intergenic
TGGTTGAATCTCGCAATCAT+CGG 0.566053 5_1:-28348192 None:intergenic
AGAAGGCTCTGGAGCTCTAG+AGG 0.581340 5_1:+28344930 Msa0726830:CDS
CATTTAAGACTCCTTTGCAA+CGG 0.583923 5_1:-28345704 None:intergenic
GTTGATTTGGTATCTGCAGA+AGG 0.585096 5_1:+28344913 Msa0726830:CDS
TAATGGCTGTATTTGTTGCA+CGG 0.589197 5_1:+28343415 Msa0726830:CDS
TGATTTAAACCAACAAGAGT+GGG 0.591681 5_1:-28348572 None:intergenic
AAAGAGCATTGATAAATGAA+GGG 0.594588 5_1:+28343354 Msa0726830:CDS
GGACATTGTAATTCTTAACA+AGG 0.607377 5_1:+28344891 Msa0726830:intron
AAACCAACAAGAGTGGGTGT+TGG 0.608339 5_1:-28348566 None:intergenic
AAGAGCATTGATAAATGAAG+GGG 0.611247 5_1:+28343355 Msa0726830:CDS
AAGTTCCATTTCCAAAGTGT+AGG 0.615904 5_1:-28348603 None:intergenic
ATGGATGTATACCGTTGCAA+AGG 0.617207 5_1:+28345693 Msa0726830:CDS
TCTTGGTGCTGGCAAATCCA+CGG 0.620578 5_1:+28342562 Msa0726830:CDS
CTGCAGTATCGTAAGCGTGG+CGG 0.624449 5_1:-28345041 None:intergenic
ATATATTGAACTCTCAACAT+GGG 0.629606 5_1:+28343282 Msa0726830:CDS
TGTTGAATCTCAACAGCAAG+AGG 0.636495 5_1:-28342476 None:intergenic
TGAATCTCAACAGCAAGAGG+TGG 0.637466 5_1:-28342473 None:intergenic
GCAGACTCGTATATGGCTAG+AGG 0.641181 5_1:+28345644 Msa0726830:intron
AGCTTGTGCAGAGAAAAGAA+AGG 0.645456 5_1:+28343468 Msa0726830:CDS
CAGGAAATGAAGATGAGCCA+CGG 0.651825 5_1:-28344506 None:intergenic
GTTTGGTGAGGAAATTGGAG+TGG 0.654078 5_1:+28343331 Msa0726830:CDS
AGCTCTAGAGGAACTCGAGG+AGG 0.659807 5_1:+28344942 Msa0726830:CDS
AACCAAAGAATAGATGCCAA+AGG 0.660580 5_1:-28343996 None:intergenic
TTACTGCAGTATCGTAAGCG+TGG 0.673945 5_1:-28345044 None:intergenic
TGGAGCTCTAGAGGAACTCG+AGG 0.681621 5_1:+28344939 Msa0726830:CDS
TTAATATTTATACCCACACA+AGG 0.684499 5_1:-28348162 None:intergenic
GATATTGAATGAGTTTGGTG+AGG 0.685395 5_1:+28343319 Msa0726830:CDS
TTCCAGCTCAAGGAGCACCG+TGG 0.718846 5_1:+28344489 Msa0726830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTAGATTTTATTTT+TGG - chr5_1:28343103-28343122 None:intergenic 10.0%
!!! TTAACTTTTATATTTTGAAA+AGG + chr5_1:28347525-28347544 Msa0726830:intron 10.0%
!!! TTTTTTTTATAGACAAATTT+TGG + chr5_1:28348233-28348252 Msa0726830:three_prime_UTR 10.0%
!!! TTCATTTTCTTTTTTGTTAT+TGG + chr5_1:28342651-28342670 Msa0726830:intron 15.0%
!!! TCATTTTCTTTTTTGTTATT+GGG + chr5_1:28342652-28342671 Msa0726830:intron 15.0%
!!! AAGTATTTTTTAATTGGATT+TGG + chr5_1:28342811-28342830 Msa0726830:intron 15.0%
!!! AACAAATTATTCAAATTTTG+AGG + chr5_1:28343501-28343520 Msa0726830:intron 15.0%
!! TATTTATAAGAGATTCAAAA+GGG - chr5_1:28343860-28343879 None:intergenic 15.0%
!!! TAGTTCAATTAAACATTTTT+AGG + chr5_1:28343911-28343930 Msa0726830:intron 15.0%
!!! ATTGTTTGTTATATATTAAC+TGG + chr5_1:28344558-28344577 Msa0726830:intron 15.0%
!!! TATTTTATATGTTTAAACCA+TGG + chr5_1:28345622-28345641 Msa0726830:intron 15.0%
!! TATTTAGTGTACTATTTATA+AGG + chr5_1:28345863-28345882 Msa0726830:intron 15.0%
!!! AATTAATTCATTTGTTGTTT+GGG + chr5_1:28345993-28346012 Msa0726830:intron 15.0%
!! TGAGATGTTTATAAAAATAT+TGG + chr5_1:28346794-28346813 Msa0726830:intron 15.0%
!!! TTAAAAAAAACAGAATTTTC+AGG - chr5_1:28347023-28347042 None:intergenic 15.0%
!! TAAATACTATCTTAGAATTT+GGG - chr5_1:28347063-28347082 None:intergenic 15.0%
!! TTTAGATAAATTAGACATTA+TGG + chr5_1:28347458-28347477 Msa0726830:intron 15.0%
!! TTAGATAAATTAGACATTAT+GGG + chr5_1:28347459-28347478 Msa0726830:intron 15.0%
!! TAAATCATTTGATTGATATT+TGG + chr5_1:28347596-28347615 Msa0726830:intron 15.0%
!! ATCAAAACTCAAATATTATA+TGG - chr5_1:28347872-28347891 None:intergenic 15.0%
!! ATGAATAAGATAGTATTTAT+AGG + chr5_1:28347984-28348003 Msa0726830:CDS 15.0%
!!! ATGTTTATTTTTTGATTAAC+AGG + chr5_1:28348066-28348085 Msa0726830:intron 15.0%
!! AATAAATTAACACACTAATT+TGG - chr5_1:28348215-28348234 None:intergenic 15.0%
!! ATTAAAGTAACATGTTAATT+GGG - chr5_1:28348482-28348501 None:intergenic 15.0%
!! AATTAAAGTAACATGTTAAT+TGG - chr5_1:28348483-28348502 None:intergenic 15.0%
!! TATAGAAAGGGAAAATTAAT+GGG - chr5_1:28342591-28342610 None:intergenic 20.0%
!! TTATAGAAAGGGAAAATTAA+TGG - chr5_1:28342592-28342611 None:intergenic 20.0%
!! AAAGAAAATGAAAGTGAAAA+AGG - chr5_1:28342643-28342662 None:intergenic 20.0%
!!! CAGTGTAAGTATTTTTTAAT+TGG + chr5_1:28342805-28342824 Msa0726830:intron 20.0%
!! AATCTAAAAAGAAATCTTAC+AGG + chr5_1:28343110-28343129 Msa0726830:intron 20.0%
!! ATCTAAAAAGAAATCTTACA+GGG + chr5_1:28343111-28343130 Msa0726830:intron 20.0%
!! ATTTATAAGAGATTCAAAAG+GGG - chr5_1:28343859-28343878 None:intergenic 20.0%
!! CTATTTATAAGAGATTCAAA+AGG - chr5_1:28343861-28343880 None:intergenic 20.0%
!!! CTTCTATATCTTTTTTTTTG+TGG - chr5_1:28344648-28344667 None:intergenic 20.0%
!!! CAATTAATTCATTTGTTGTT+TGG + chr5_1:28345992-28346011 Msa0726830:intron 20.0%
!!! GCTATATGTTGATTTTAATT+AGG + chr5_1:28346318-28346337 Msa0726830:intron 20.0%
!!! TTTGAAGTTTTAGTAAATGT+AGG + chr5_1:28346736-28346755 Msa0726830:intron 20.0%
!! TGTTTATAAAAATATTGGCA+TGG + chr5_1:28346799-28346818 Msa0726830:intron 20.0%
!!! TTTGTTTTGAGAGTTTATAT+TGG + chr5_1:28346949-28346968 Msa0726830:intron 20.0%
!! CCTGAAAAACATTTATAAAT+CGG + chr5_1:28346985-28347004 Msa0726830:intron 20.0%
!! AAATACTATCTTAGAATTTG+GGG - chr5_1:28347062-28347081 None:intergenic 20.0%
!! CTAAATACTATCTTAGAATT+TGG - chr5_1:28347064-28347083 None:intergenic 20.0%
!!! AAGATTCTAAAGTTACTAAA+TGG - chr5_1:28347406-28347425 None:intergenic 20.0%
!!! TGTCTAATTTATCTAAAACT+TGG - chr5_1:28347455-28347474 None:intergenic 20.0%
!! ATTTAATCTTGTGGTTTATT+TGG + chr5_1:28347483-28347502 Msa0726830:intron 20.0%
!! ATTTATTTCACTATTATCGT+CGG - chr5_1:28347654-28347673 None:intergenic 20.0%
!! AACTCAAATATTATATGGAA+GGG - chr5_1:28347867-28347886 None:intergenic 20.0%
!! AAACTCAAATATTATATGGA+AGG - chr5_1:28347868-28347887 None:intergenic 20.0%
!!! AGTACTTATGTTAGTTTTTA+AGG + chr5_1:28348311-28348330 Msa0726830:three_prime_UTR 20.0%
!!! AATAACTTTTAAGAGGTTTA+GGG - chr5_1:28348350-28348369 None:intergenic 20.0%
!!! AAATAACTTTTAAGAGGTTT+AGG - chr5_1:28348351-28348370 None:intergenic 20.0%
!!! CATTACAAATAACTTTTAAG+AGG - chr5_1:28348357-28348376 None:intergenic 20.0%
!! TTAAAGTAACATGTTAATTG+GGG - chr5_1:28348481-28348500 None:intergenic 20.0%
! CCAGTTAGAAATTATAGAAA+GGG - chr5_1:28342603-28342622 None:intergenic 25.0%
! CCTTTCTATAATTTCTAACT+GGG + chr5_1:28342601-28342620 Msa0726830:intron 25.0%
! CTATTATTTCAACAAGCTAT+AGG - chr5_1:28342685-28342704 None:intergenic 25.0%
!! TTTTTGGATGATAAATGATG+TGG - chr5_1:28343087-28343106 None:intergenic 25.0%
!! CTTACAATTATAGTGTTGTT+TGG - chr5_1:28343144-28343163 None:intergenic 25.0%
! CAAACAACACTATAATTGTA+AGG + chr5_1:28343142-28343161 Msa0726830:intron 25.0%
! ATTCCATATCACAAAATCAT+TGG - chr5_1:28343226-28343245 None:intergenic 25.0%
! ATATATTGAACTCTCAACAT+GGG + chr5_1:28343282-28343301 Msa0726830:CDS 25.0%
!!! AAAGAGCATTGATAAATGAA+GGG + chr5_1:28343354-28343373 Msa0726830:CDS 25.0%
! ATAACCAACAATAAGGATAA+GGG - chr5_1:28343610-28343629 None:intergenic 25.0%
! TATATGCATAACCAACAATA+AGG - chr5_1:28343617-28343636 None:intergenic 25.0%
! TTATAAATAGATGCAGTGTT+CGG + chr5_1:28343871-28343890 Msa0726830:intron 25.0%
!! TTTAGGTATTTTGTGTTTGT+AGG + chr5_1:28343928-28343947 Msa0726830:intron 25.0%
!! ACATTTTATAGTACTTGTCA+TGG + chr5_1:28344293-28344312 Msa0726830:intron 25.0%
!! TCTTGTTAATTTTGTGATAG+TGG + chr5_1:28344336-28344355 Msa0726830:intron 25.0%
! AGCTTCTATCAACATATAAA+AGG - chr5_1:28344370-28344389 None:intergenic 25.0%
!! ATATTTTCAGATAGCATTTG+CGG + chr5_1:28344533-28344552 Msa0726830:CDS 25.0%
! GACATCAATTTAATGAGAAA+AGG - chr5_1:28344598-28344617 None:intergenic 25.0%
!! AATTCTTAACAAGGTTGATT+TGG + chr5_1:28344900-28344919 Msa0726830:CDS 25.0%
! TACTTTATTAGAAGCTATAC+AGG - chr5_1:28345346-28345365 None:intergenic 25.0%
! TGCATTTAGTATTAGGAAAA+TGG + chr5_1:28345402-28345421 Msa0726830:intron 25.0%
! AGTTATAACAGAAAAGCTAA+AGG - chr5_1:28346056-28346075 None:intergenic 25.0%
! AATTCTGTTAGAATGATTCT+CGG + chr5_1:28346085-28346104 Msa0726830:intron 25.0%
! TCTTTAATTAGAGATGAATC+TGG - chr5_1:28346415-28346434 None:intergenic 25.0%
! TTATAAAAATATTGGCATGG+TGG + chr5_1:28346802-28346821 Msa0726830:intron 25.0%
! ACTATCTATTCTTACACATA+TGG - chr5_1:28346920-28346939 None:intergenic 25.0%
!! CCGATTTATAAATGTTTTTC+AGG - chr5_1:28346988-28347007 None:intergenic 25.0%
! GAAAAACATTTATAAATCGG+AGG + chr5_1:28346988-28347007 Msa0726830:intron 25.0%
! AGTATTTAGACCTTAGTTAT+AGG + chr5_1:28347075-28347094 Msa0726830:intron 25.0%
! GTATTTAGACCTTAGTTATA+GGG + chr5_1:28347076-28347095 Msa0726830:intron 25.0%
! ATGCTTCAAATGTAAAATCT+TGG + chr5_1:28347110-28347129 Msa0726830:intron 25.0%
! TGCTTCAAATGTAAAATCTT+GGG + chr5_1:28347111-28347130 Msa0726830:intron 25.0%
! AGTCTTCATTAGATGTAATA+TGG + chr5_1:28347154-28347173 Msa0726830:intron 25.0%
!! CTAGTAACACTTTAAAAATC+TGG + chr5_1:28347270-28347289 Msa0726830:intron 25.0%
!! TAACACTTTAAAAATCTGGT+TGG + chr5_1:28347274-28347293 Msa0726830:intron 25.0%
! ATTATGGGTATTTAATCTTG+TGG + chr5_1:28347474-28347493 Msa0726830:intron 25.0%
!! AGTTAGATGAAGTATCAATT+AGG + chr5_1:28347570-28347589 Msa0726830:intron 25.0%
! ACTCAAATATTATATGGAAG+GGG - chr5_1:28347866-28347885 None:intergenic 25.0%
! AGTATTTATAGGTAACATGA+CGG + chr5_1:28347995-28348014 Msa0726830:intron 25.0%
! TTAATATTTATACCCACACA+AGG - chr5_1:28348165-28348184 None:intergenic 25.0%
!!! TATGTTAGTTTTTAAGGTTC+TGG + chr5_1:28348317-28348336 Msa0726830:three_prime_UTR 25.0%
!!! ATGTTAGTTTTTAAGGTTCT+GGG + chr5_1:28348318-28348337 Msa0726830:three_prime_UTR 25.0%
! GATGAATCAAGGAAAAAATT+GGG - chr5_1:28348442-28348461 None:intergenic 25.0%
! TGATGAATCAAGGAAAAAAT+TGG - chr5_1:28348443-28348462 None:intergenic 25.0%
AACAGAAGATTGTTGAGAAA+TGG - chr5_1:28342519-28342538 None:intergenic 30.0%
ATTTCTCAACAATCTTCTGT+TGG + chr5_1:28342518-28342537 Msa0726830:CDS 30.0%
CCCTTTCTATAATTTCTAAC+TGG + chr5_1:28342600-28342619 Msa0726830:intron 30.0%
CCCAGTTAGAAATTATAGAA+AGG - chr5_1:28342604-28342623 None:intergenic 30.0%
! CTTTACAGTTATAGCGTTTT+TGG + chr5_1:28342775-28342794 Msa0726830:intron 30.0%
TAGAAAATGCCGAAATTGTT+AGG + chr5_1:28343010-28343029 Msa0726830:intron 30.0%
AAACCTTGTAACTGTTATAC+TGG + chr5_1:28343180-28343199 Msa0726830:intron 30.0%
TGTGATATGGAATTGTGAAT+TGG + chr5_1:28343233-28343252 Msa0726830:intron 30.0%
CATATATTGAACTCTCAACA+TGG + chr5_1:28343281-28343300 Msa0726830:CDS 30.0%
!! GAAAGAGCATTGATAAATGA+AGG + chr5_1:28343353-28343372 Msa0726830:CDS 30.0%
!! AAGAGCATTGATAAATGAAG+GGG + chr5_1:28343355-28343374 Msa0726830:CDS 30.0%
TCTGACTCATAATTACACTT+AGG + chr5_1:28343541-28343560 Msa0726830:intron 30.0%
CATAACCAACAATAAGGATA+AGG - chr5_1:28343611-28343630 None:intergenic 30.0%
! ACTGTTTTCATAAACTTTCC+TGG + chr5_1:28343671-28343690 Msa0726830:intron 30.0%
!! TTTATTTCTATAAGCTCTCC+AGG - chr5_1:28343692-28343711 None:intergenic 30.0%
AAGAACTTGTGAGATTCTTA+GGG - chr5_1:28343761-28343780 None:intergenic 30.0%
TAAGAACTTGTGAGATTCTT+AGG - chr5_1:28343762-28343781 None:intergenic 30.0%
TCATCCATTAACGATACTTA+CGG - chr5_1:28344066-28344085 None:intergenic 30.0%
!!! GTTTTTTGTTTTTTGAGCCA+TGG + chr5_1:28344103-28344122 Msa0726830:intron 30.0%
ACAGTTTCATTTGTTTGACA+GGG - chr5_1:28344226-28344245 None:intergenic 30.0%
AACAGTTTCATTTGTTTGAC+AGG - chr5_1:28344227-28344246 None:intergenic 30.0%
! TATTTCTTGGACAATTTTGC+TGG - chr5_1:28344263-28344282 None:intergenic 30.0%
ATTGTCCAAGAAATAGTTCT+TGG + chr5_1:28344268-28344287 Msa0726830:intron 30.0%
TAAATTATCAGCATAGACAG+GGG - chr5_1:28344739-28344758 None:intergenic 30.0%
CTAAATTATCAGCATAGACA+GGG - chr5_1:28344740-28344759 None:intergenic 30.0%
AAGAAATACTGTTACAGACT+AGG - chr5_1:28344809-28344828 None:intergenic 30.0%
ATACAACTCTATTGTGTGAA+AGG - chr5_1:28344838-28344857 None:intergenic 30.0%
GGACATTGTAATTCTTAACA+AGG + chr5_1:28344891-28344910 Msa0726830:intron 30.0%
ACTAAAAAGCTTCATGATAG+TGG + chr5_1:28345199-28345218 Msa0726830:CDS 30.0%
ATCTACAGTAACATCATGAA+CGG - chr5_1:28345289-28345308 None:intergenic 30.0%
TTAGAAGCTATACAGGAAAA+AGG - chr5_1:28345339-28345358 None:intergenic 30.0%
TTGGGAGAAGAAATATGATA+TGG + chr5_1:28345674-28345693 Msa0726830:CDS 30.0%
AATTAAGTTTGCATTCGCAT+TGG + chr5_1:28345815-28345834 Msa0726830:intron 30.0%
!!! TCTTTTTCAAACAGTAACAG+TGG - chr5_1:28345843-28345862 None:intergenic 30.0%
TTGTCAAGATTACTGAAGTA+TGG - chr5_1:28345897-28345916 None:intergenic 30.0%
GTTGTAGAATCTACAATCTA+GGG - chr5_1:28345973-28345992 None:intergenic 30.0%
TGTTGTAGAATCTACAATCT+AGG - chr5_1:28345974-28345993 None:intergenic 30.0%
TTGAAGGAATAGCTTAGTAT+AGG - chr5_1:28346290-28346309 None:intergenic 30.0%
TACTAAGCTATTCCTTCAAT+AGG + chr5_1:28346291-28346310 Msa0726830:intron 30.0%
CATATAGCAATACCTATTGA+AGG - chr5_1:28346306-28346325 None:intergenic 30.0%
AGTATGCTAAAAGAGAAACA+AGG + chr5_1:28346444-28346463 Msa0726830:intron 30.0%
ATTTAGTCAAAAAGATCCCT+TGG + chr5_1:28346483-28346502 Msa0726830:intron 30.0%
AAATTACAAACCCTTATACG+AGG - chr5_1:28346702-28346721 None:intergenic 30.0%
!! AAAACAGAATTTTCAGGCAA+GGG - chr5_1:28347017-28347036 None:intergenic 30.0%
!! AAAAACAGAATTTTCAGGCA+AGG - chr5_1:28347018-28347037 None:intergenic 30.0%
AAATGTAAAATCTTGGGTGT+GGG + chr5_1:28347117-28347136 Msa0726830:intron 30.0%
AGTAGAGTAACAATTGAGTT+TGG + chr5_1:28347226-28347245 Msa0726830:intron 30.0%
! TTACTAGCTCTTGGAATTTA+GGG - chr5_1:28347257-28347276 None:intergenic 30.0%
! TTTAAAGTGTTACTAGCTCT+TGG - chr5_1:28347266-28347285 None:intergenic 30.0%
TTTAAAAATCTGGTTGGACA+TGG + chr5_1:28347280-28347299 Msa0726830:intron 30.0%
ACAAATATATCAGACGAAGA+GGG - chr5_1:28347356-28347375 None:intergenic 30.0%
AACAAATATATCAGACGAAG+AGG - chr5_1:28347357-28347376 None:intergenic 30.0%
TTTGGCAAAACAAAATCTTG+TGG + chr5_1:28347501-28347520 Msa0726830:intron 30.0%
ATCAAACCTAAAACCGAAAT+TGG - chr5_1:28347728-28347747 None:intergenic 30.0%
CTCAAATATTATATGGAAGG+GGG - chr5_1:28347865-28347884 None:intergenic 30.0%
GTATTTATAGGTAACATGAC+GGG + chr5_1:28347996-28348015 Msa0726830:intron 30.0%
AAAGAAGATGTCCTAATCAA+TGG + chr5_1:28348099-28348118 Msa0726830:CDS 30.0%
AAAAAATTGGGAAGATGGTA+GGG - chr5_1:28348430-28348449 None:intergenic 30.0%
AACTCAACATTGATGAATCA+AGG - chr5_1:28348453-28348472 None:intergenic 30.0%
TGATTTAAACCAACAAGAGT+GGG - chr5_1:28348575-28348594 None:intergenic 30.0%
TTGATTTAAACCAACAAGAG+TGG - chr5_1:28348576-28348595 None:intergenic 30.0%
TCTAATTGAGCTCGAACTTA+TGG - chr5_1:28342994-28343013 None:intergenic 35.0%
CACTTGAAAACTCACAAGTT+AGG - chr5_1:28343057-28343076 None:intergenic 35.0%
!! CTAACTTGTGAGTTTTCAAG+TGG + chr5_1:28343055-28343074 Msa0726830:intron 35.0%
CTTCCAGTATAACAGTTACA+AGG - chr5_1:28343186-28343205 None:intergenic 35.0%
GCTGTGATATTGAATGAGTT+TGG + chr5_1:28343314-28343333 Msa0726830:CDS 35.0%
! GATATTGAATGAGTTTGGTG+AGG + chr5_1:28343319-28343338 Msa0726830:CDS 35.0%
! AATGAGTTTGGTGAGGAAAT+TGG + chr5_1:28343326-28343345 Msa0726830:CDS 35.0%
TTGATAAATGAAGGGGAAAG+TGG + chr5_1:28343362-28343381 Msa0726830:CDS 35.0%
! TAATGGCTGTATTTGTTGCA+CGG + chr5_1:28343415-28343434 Msa0726830:CDS 35.0%
CTCACAAGTTCTTATACTAG+TGG + chr5_1:28343768-28343787 Msa0726830:intron 35.0%
! CTTATACTAGTGGATAAGCT+TGG + chr5_1:28343778-28343797 Msa0726830:intron 35.0%
AACCAAAGAATAGATGCCAA+AGG - chr5_1:28343999-28344018 None:intergenic 35.0%
TTTGGCATCTATTCTTTGGT+TGG + chr5_1:28343998-28344017 Msa0726830:CDS 35.0%
! GTATCGTTAATGGATGAAAC+TGG + chr5_1:28344069-28344088 Msa0726830:intron 35.0%
AGAAAATGAAGCAAGATCCA+TGG - chr5_1:28344123-28344142 None:intergenic 35.0%
! TGTCTCCAAGAACTATTTCT+TGG - chr5_1:28344276-28344295 None:intergenic 35.0%
!! ATAGAAGCTGTTTCTTTCCT+CGG + chr5_1:28344381-28344400 Msa0726830:intron 35.0%
! AATTGTGTTTCTACCGAAGT+AGG + chr5_1:28344443-28344462 Msa0726830:intron 35.0%
GCTATCTGAAAATATGCTTC+AGG - chr5_1:28344528-28344547 None:intergenic 35.0%
CCTAAATTATCAGCATAGAC+AGG - chr5_1:28344741-28344760 None:intergenic 35.0%
CCTGTCTATGCTGATAATTT+AGG + chr5_1:28344738-28344757 Msa0726830:intron 35.0%
TTATGGTACTTTACGAGTTG+TGG - chr5_1:28344779-28344798 None:intergenic 35.0%
ATACTGTTACAGACTAGGTA+GGG - chr5_1:28344804-28344823 None:intergenic 35.0%
AATACTGTTACAGACTAGGT+AGG - chr5_1:28344805-28344824 None:intergenic 35.0%
CAGCAACATTATTAGCACTT+TGG - chr5_1:28344862-28344881 None:intergenic 35.0%
! ATAATGTTGCTGCTTCTTTC+AGG + chr5_1:28344870-28344889 Msa0726830:intron 35.0%
CTACGAGTGTGTTAATGTTA+TGG - chr5_1:28344972-28344991 None:intergenic 35.0%
GCTGAAAAGAGAAACAAAAC+AGG - chr5_1:28345132-28345151 None:intergenic 35.0%
AGGAACAGTTGATCTTGATA+AGG + chr5_1:28345249-28345268 Msa0726830:CDS 35.0%
TGCGTCATGCATTTAGTATT+AGG + chr5_1:28345395-28345414 Msa0726830:intron 35.0%
CATTTAAGTGAAGCAAAAGC+AGG - chr5_1:28345477-28345496 None:intergenic 35.0%
! CATTTAAGACTCCTTTGCAA+CGG - chr5_1:28345707-28345726 None:intergenic 35.0%
TGATGAATTGCATACTTTGC+AGG + chr5_1:28345737-28345756 Msa0726830:CDS 35.0%
AATTGCCAAGTACCAAGTTA+TGG + chr5_1:28345930-28345949 Msa0726830:intron 35.0%
AAGTAGACAGAACCATAACT+TGG - chr5_1:28345945-28345964 None:intergenic 35.0%
TGCCAGATAATACAGTTAGA+CGG + chr5_1:28346205-28346224 Msa0726830:intron 35.0%
AACCGTCTAACTGTATTATC+TGG - chr5_1:28346210-28346229 None:intergenic 35.0%
TCATGCGCTATCAATTAACT+GGG - chr5_1:28346777-28346796 None:intergenic 35.0%
! CAATTTTGAACGTCTTCACA+TGG - chr5_1:28346892-28346911 None:intergenic 35.0%
CAAATGTAAAATCTTGGGTG+TGG + chr5_1:28347116-28347135 Msa0726830:intron 35.0%
! GTTACTAGCTCTTGGAATTT+AGG - chr5_1:28347258-28347277 None:intergenic 35.0%
GGAGAATGCTAATACATAGA+TGG - chr5_1:28347334-28347353 None:intergenic 35.0%
CAAATATATCAGACGAAGAG+GGG - chr5_1:28347355-28347374 None:intergenic 35.0%
AGTGGAAGAAAGAAGAAAAC+AGG + chr5_1:28347961-28347980 Msa0726830:CDS 35.0%
GTAGTGTTGTGTTAGTTACT+AGG + chr5_1:28348263-28348282 Msa0726830:three_prime_UTR 35.0%
GAAAAAATTGGGAAGATGGT+AGG - chr5_1:28348431-28348450 None:intergenic 35.0%
CAAGGAAAAAATTGGGAAGA+TGG - chr5_1:28348435-28348454 None:intergenic 35.0%
AAGTTCCATTTCCAAAGTGT+AGG - chr5_1:28348606-28348625 None:intergenic 35.0%
! TGTTCTTGTGCTGCGTTTTT+GGG - chr5_1:28342409-28342428 None:intergenic 40.0%
! TTGTTCTTGTGCTGCGTTTT+TGG - chr5_1:28342410-28342429 None:intergenic 40.0%
ACACATCAACTCCTCCAAAA+TGG + chr5_1:28342430-28342449 Msa0726830:exon 40.0%
! TTCATCGTGTTCCATTTTGG+AGG - chr5_1:28342444-28342463 None:intergenic 40.0%
! GTCTTCATCGTGTTCCATTT+TGG - chr5_1:28342447-28342466 None:intergenic 40.0%
TGTTGAATCTCAACAGCAAG+AGG - chr5_1:28342479-28342498 None:intergenic 40.0%
! ACTCTCATCACTGGTTATCT+TGG + chr5_1:28342545-28342564 Msa0726830:CDS 40.0%
!! GGAAAATTAATGGGTTACCG+TGG - chr5_1:28342582-28342601 None:intergenic 40.0%
ACGTCAAGGACTAAAAGGAA+CGG - chr5_1:28342856-28342875 None:intergenic 40.0%
CTCAATATAATCGCAACACG+CGG - chr5_1:28342898-28342917 None:intergenic 40.0%
ATCACAAAATCATTGGCCGA+GGG - chr5_1:28343219-28343238 None:intergenic 40.0%
TATCACAAAATCATTGGCCG+AGG - chr5_1:28343220-28343239 None:intergenic 40.0%
! CGGCCAATGATTTTGTGATA+TGG + chr5_1:28343220-28343239 Msa0726830:intron 40.0%
TGGTGCAGTTGTTGAAGAAT+GGG + chr5_1:28343382-28343401 Msa0726830:CDS 40.0%
!! GAATGGGTTGAACTTGCTAA+TGG + chr5_1:28343398-28343417 Msa0726830:CDS 40.0%
TTGCACGGTTAAGCATAGTT+TGG + chr5_1:28343430-28343449 Msa0726830:CDS 40.0%
AGCTTGTGCAGAGAAAAGAA+AGG + chr5_1:28343468-28343487 Msa0726830:CDS 40.0%
TGTGCCCTTATCCTTATTGT+TGG + chr5_1:28343603-28343622 Msa0726830:intron 40.0%
AGATTCTTAGGGAGAGCTTA+TGG - chr5_1:28343750-28343769 None:intergenic 40.0%
TTGGATAAGCTAATCCAAGC+AGG + chr5_1:28343797-28343816 Msa0726830:intron 40.0%
TAGGCTAGACCATATATTGC+TGG + chr5_1:28343947-28343966 Msa0726830:intron 40.0%
CAGTAGCTTCCAGCAATATA+TGG - chr5_1:28343959-28343978 None:intergenic 40.0%
CATATATTGCTGGAAGCTAC+TGG + chr5_1:28343957-28343976 Msa0726830:CDS 40.0%
CACCTTTGGCATCTATTCTT+TGG + chr5_1:28343994-28344013 Msa0726830:CDS 40.0%
TCTTTGGTTGGATGAACAGT+TGG + chr5_1:28344010-28344029 Msa0726830:CDS 40.0%
! GTCACCGTAAGTATCGTTAA+TGG + chr5_1:28344059-28344078 Msa0726830:intron 40.0%
TTGGCATCTACTACCTACTT+CGG - chr5_1:28344459-28344478 None:intergenic 40.0%
CATAGACAGGGGAAGTTATT+TGG - chr5_1:28344728-28344747 None:intergenic 40.0%
! ACAGACTAGGTAGGGTATTA+TGG - chr5_1:28344796-28344815 None:intergenic 40.0%
!! GTTGATTTGGTATCTGCAGA+AGG + chr5_1:28344913-28344932 Msa0726830:CDS 40.0%
GAAACAAAACAGGTAAGCTG+CGG - chr5_1:28345122-28345141 None:intergenic 40.0%
AACAATGATTCCTGCTACCA+CGG + chr5_1:28345437-28345456 Msa0726830:intron 40.0%
! AGAACAAAGCATTCTCTGCT+AGG - chr5_1:28345541-28345560 None:intergenic 40.0%
TATGGCTAGAGGAGATTCTT+TGG + chr5_1:28345655-28345674 Msa0726830:CDS 40.0%
ATGGCTAGAGGAGATTCTTT+GGG + chr5_1:28345656-28345675 Msa0726830:CDS 40.0%
ATGGATGTATACCGTTGCAA+AGG + chr5_1:28345693-28345712 Msa0726830:CDS 40.0%
CAGAACCATAACTTGGTACT+TGG - chr5_1:28345938-28345957 None:intergenic 40.0%
! GATTCTCGGTTAGTTACATG+AGG + chr5_1:28346099-28346118 Msa0726830:intron 40.0%
GAGGTGAAGAGTCTATCTAT+AGG + chr5_1:28346118-28346137 Msa0726830:intron 40.0%
ATACAGTTAGACGGTTACAC+AGG + chr5_1:28346214-28346233 Msa0726830:intron 40.0%
TACAGTTAGACGGTTACACA+GGG + chr5_1:28346215-28346234 Msa0726830:intron 40.0%
TGTGATCAGAACGATCACAA+AGG - chr5_1:28346262-28346281 None:intergenic 40.0%
AACATCCTCTTGCAAATGCA+AGG + chr5_1:28346570-28346589 Msa0726830:intron 40.0%
TCTATCAAACTCTCATCACG+AGG - chr5_1:28346642-28346661 None:intergenic 40.0%
GATGAGAGTTTGATAGAGCA+AGG + chr5_1:28346645-28346664 Msa0726830:intron 40.0%
TAGTCACACACCTCGTATAA+GGG + chr5_1:28346689-28346708 Msa0726830:intron 40.0%
CTCATGCGCTATCAATTAAC+TGG - chr5_1:28346778-28346797 None:intergenic 40.0%
CTTAGTTATAGGGTCACTCA+GGG + chr5_1:28347086-28347105 Msa0726830:intron 40.0%
ACTCTACTTATAACCAGCCA+AGG - chr5_1:28347214-28347233 None:intergenic 40.0%
! AGCTCTTGGAATTTAGGGTT+TGG - chr5_1:28347252-28347271 None:intergenic 40.0%
TGAAATAAATGCAGCCCACT+TGG + chr5_1:28347664-28347683 Msa0726830:intron 40.0%
GAAATAAATGCAGCCCACTT+GGG + chr5_1:28347665-28347684 Msa0726830:intron 40.0%
! AGTGTGCCAATTTCGGTTTT+AGG + chr5_1:28347719-28347738 Msa0726830:intron 40.0%
ATTCTACCCAGTGCCAATTT+CGG + chr5_1:28347746-28347765 Msa0726830:intron 40.0%
ACCATTCATTGCTGAAATCC+TGG + chr5_1:28347898-28347917 Msa0726830:intron 40.0%
! GAGCTTTCAAGCCATTGATT+AGG - chr5_1:28348113-28348132 None:intergenic 40.0%
AAACAAATACGCAGCCTAAC+AGG - chr5_1:28348142-28348161 None:intergenic 40.0%
TGCGTATTTGTTTCCTTGTG+TGG + chr5_1:28348149-28348168 Msa0726830:three_prime_UTR 40.0%
GCGTATTTGTTTCCTTGTGT+GGG + chr5_1:28348150-28348169 Msa0726830:three_prime_UTR 40.0%
TGGTTGAATCTCGCAATCAT+CGG - chr5_1:28348195-28348214 None:intergenic 40.0%
TGAATCTCAACAGCAAGAGG+TGG - chr5_1:28342476-28342495 None:intergenic 45.0%
! ATCACTGGTTATCTTGGTGC+TGG + chr5_1:28342551-28342570 Msa0726830:CDS 45.0%
GGACTAAAAGGAACGGAGTT+TGG - chr5_1:28342849-28342868 None:intergenic 45.0%
AGCTGACGTCAAGGACTAAA+AGG - chr5_1:28342861-28342880 None:intergenic 45.0%
AGTCCTTGACGTCAGCTTAT+TGG + chr5_1:28342864-28342883 Msa0726830:intron 45.0%
GTCCTTGACGTCAGCTTATT+GGG + chr5_1:28342865-28342884 Msa0726830:intron 45.0%
GGCACTCAGCCTAACAATTT+CGG - chr5_1:28343022-28343041 None:intergenic 45.0%
AACTCACAAGTTAGGATCCC+AGG - chr5_1:28343049-28343068 None:intergenic 45.0%
TGAACTCTCAACATGGGAAG+AGG + chr5_1:28343288-28343307 Msa0726830:CDS 45.0%
! GTTTGGTGAGGAAATTGGAG+TGG + chr5_1:28343331-28343350 Msa0726830:CDS 45.0%
GTGGTGCAGTTGTTGAAGAA+TGG + chr5_1:28343381-28343400 Msa0726830:CDS 45.0%
! ATTGCTGGAAGCTACTGGTT+TGG + chr5_1:28343962-28343981 Msa0726830:CDS 45.0%
TTTGGCTAATCCAGCACCTT+TGG + chr5_1:28343980-28343999 Msa0726830:CDS 45.0%
! AGAATAGATGCCAAAGGTGC+TGG - chr5_1:28343993-28344012 None:intergenic 45.0%
AATCACACACTCATGTACCG+AGG - chr5_1:28344401-28344420 None:intergenic 45.0%
! GAGCTGGAAGCGAACATTTT+TGG - chr5_1:28344478-28344497 None:intergenic 45.0%
AAATGTTCGCTTCCAGCTCA+AGG + chr5_1:28344479-28344498 Msa0726830:CDS 45.0%
CAGGAAATGAAGATGAGCCA+CGG - chr5_1:28344509-28344528 None:intergenic 45.0%
TTACTGCAGTATCGTAAGCG+TGG - chr5_1:28345047-28345066 None:intergenic 45.0%
ACCATATGCATCTGTGAGAC+AGG + chr5_1:28345229-28345248 Msa0726830:CDS 45.0%
TCCTGTCTCACAGATGCATA+TGG - chr5_1:28345233-28345252 None:intergenic 45.0%
ACAATGATTCCTGCTACCAC+GGG + chr5_1:28345438-28345457 Msa0726830:intron 45.0%
GCATTCTCTGCTAGGCATTA+CGG - chr5_1:28345533-28345552 None:intergenic 45.0%
AACCATGGCAGACTCGTATA+TGG + chr5_1:28345637-28345656 Msa0726830:intron 45.0%
ATAAGATCCGTCTTCACCAG+TGG + chr5_1:28345761-28345780 Msa0726830:intron 45.0%
AATTTGACATGCCTGACCAC+TGG - chr5_1:28345780-28345799 None:intergenic 45.0%
AGATCCCTTGGCATAACTGT+TGG + chr5_1:28346495-28346514 Msa0726830:intron 45.0%
GACTCCAACAGTTATGCCAA+GGG - chr5_1:28346502-28346521 None:intergenic 45.0%
TGACTCCAACAGTTATGCCA+AGG - chr5_1:28346503-28346522 None:intergenic 45.0%
CCTTACCTTGCATTTGCAAG+AGG - chr5_1:28346578-28346597 None:intergenic 45.0%
CCTCTTGCAAATGCAAGGTA+AGG + chr5_1:28346575-28346594 Msa0726830:intron 45.0%
GTGTGCAATATATCCGTGAC+AGG + chr5_1:28346600-28346619 Msa0726830:intron 45.0%
AGGTGTGTGACTAGAATGTG+TGG - chr5_1:28346682-28346701 None:intergenic 45.0%
CTAGTCACACACCTCGTATA+AGG + chr5_1:28346688-28346707 Msa0726830:intron 45.0%
AAATATTGGCATGGTGGCAG+TGG + chr5_1:28346808-28346827 Msa0726830:intron 45.0%
!! GGCAGTGGTGTTACTTTGTT+AGG + chr5_1:28346823-28346842 Msa0726830:intron 45.0%
!! ACAGAATTTTCAGGCAAGGG+AGG - chr5_1:28347014-28347033 None:intergenic 45.0%
CCTGAGTGACCCTATAACTA+AGG - chr5_1:28347088-28347107 None:intergenic 45.0%
CCTTAGTTATAGGGTCACTC+AGG + chr5_1:28347085-28347104 Msa0726830:intron 45.0%
TGTAAAATCTTGGGTGTGGG+AGG + chr5_1:28347120-28347139 Msa0726830:intron 45.0%
CTTATAACCAGCCAAGGCAA+GGG - chr5_1:28347208-28347227 None:intergenic 45.0%
ACTTATAACCAGCCAAGGCA+AGG - chr5_1:28347209-28347228 None:intergenic 45.0%
ACCTTGGAGTGTGCCAATTT+CGG + chr5_1:28347712-28347731 Msa0726830:intron 45.0%
CCAAAATAGCCCACCGAAAT+TGG - chr5_1:28347762-28347781 None:intergenic 45.0%
!!! CCAATTTCGGTGGGCTATTT+TGG + chr5_1:28347759-28347778 Msa0726830:intron 45.0%
GCCAGGATTTCAGCAATGAA+TGG - chr5_1:28347902-28347921 None:intergenic 45.0%
TTCATTGCTGAAATCCTGGC+AGG + chr5_1:28347902-28347921 Msa0726830:intron 45.0%
TCTTTCTTCCACTTTCGAGC+AGG - chr5_1:28347954-28347973 None:intergenic 45.0%
GAAAGCTCTTGCAACCTGTT+AGG + chr5_1:28348125-28348144 Msa0726830:CDS 45.0%
AAACCAACAAGAGTGGGTGT+TGG - chr5_1:28348569-28348588 None:intergenic 45.0%
!! ATTTAAATAAATTACTTATT+TGG + chr5_1:28344157-28344176 Msa0726830:intron 5.0%
!! GTTGGTGTCACTCTCATCAC+TGG + chr5_1:28342536-28342555 Msa0726830:CDS 50.0%
!! TCTTGGTGCTGGCAAATCCA+CGG + chr5_1:28342562-28342581 Msa0726830:CDS 50.0%
TGCCCAATAAGCTGACGTCA+AGG - chr5_1:28342870-28342889 None:intergenic 50.0%
GACGTCAGCTTATTGGGCAT+TGG + chr5_1:28342871-28342890 Msa0726830:intron 50.0%
CAAGTTAGGATCCCAGGTCA+TGG - chr5_1:28343043-28343062 None:intergenic 50.0%
! TGGAAGTGTGTTCGAACCCT+CGG + chr5_1:28343200-28343219 Msa0726830:intron 50.0%
TCTCTGCACAAGCTGCTCAA+GGG - chr5_1:28343462-28343481 None:intergenic 50.0%
TTCTCTGCACAAGCTGCTCA+AGG - chr5_1:28343463-28343482 None:intergenic 50.0%
CACTATGCAATGGACCTGCT+TGG - chr5_1:28343814-28343833 None:intergenic 50.0%
AGGTCCATTGCATAGTGTCG+CGG + chr5_1:28343817-28343836 Msa0726830:intron 50.0%
TGAACCGCGACACTATGCAA+TGG - chr5_1:28343824-28343843 None:intergenic 50.0%
AGATGCAGTGTTCGGCAAAG+TGG + chr5_1:28343879-28343898 Msa0726830:intron 50.0%
GATGCAGTGTTCGGCAAAGT+GGG + chr5_1:28343880-28343899 Msa0726830:intron 50.0%
TTGGTATCTGCAGAAGGCTC+TGG + chr5_1:28344919-28344938 Msa0726830:CDS 50.0%
TAAGCTGCGGTCATGAAGGT+GGG - chr5_1:28345109-28345128 None:intergenic 50.0%
CAATGATTCCTGCTACCACG+GGG + chr5_1:28345439-28345458 Msa0726830:intron 50.0%
AATTTATGCCCCGTGGTAGC+AGG - chr5_1:28345450-28345469 None:intergenic 50.0%
AGGACACAATTTATGCCCCG+TGG - chr5_1:28345457-28345476 None:intergenic 50.0%
AGCCATATACGAGTCTGCCA+TGG - chr5_1:28345642-28345661 None:intergenic 50.0%
GCAGACTCGTATATGGCTAG+AGG + chr5_1:28345644-28345663 Msa0726830:intron 50.0%
GACACATGTCAGTCAGCTAG+AGG - chr5_1:28346157-28346176 None:intergenic 50.0%
GTCAGCAACTCCTAGATGAC+TGG + chr5_1:28346178-28346197 Msa0726830:intron 50.0%
CGACAATGTCAGACCTGTCA+CGG - chr5_1:28346616-28346635 None:intergenic 50.0%
! CATCAAGTGAGAGTGTGAGC+TGG + chr5_1:28346848-28346867 Msa0726830:intron 50.0%
AAGTGAAGACTCCCTTGCCT+TGG + chr5_1:28347194-28347213 Msa0726830:intron 50.0%
TAAATGCAGCCCACTTGGGT+TGG + chr5_1:28347669-28347688 Msa0726830:intron 50.0%
ACCGAAATTGGCACACTCCA+AGG - chr5_1:28347716-28347735 None:intergenic 50.0%
TACCCAGTGCCAATTTCGGT+GGG + chr5_1:28347750-28347769 Msa0726830:intron 50.0%
AGATCGTTCCTGCTCGAAAG+TGG + chr5_1:28347943-28347962 Msa0726830:CDS 50.0%
GGCATTGTCTTGTGCATGCA+CGG + chr5_1:28348017-28348036 Msa0726830:intron 50.0%
TCTCCAACACCCACTCTTGT+TGG + chr5_1:28348563-28348582 Msa0726830:three_prime_UTR 50.0%
TCAATGCGCGTCCTACACTT+TGG + chr5_1:28348592-28348611 Msa0726830:three_prime_UTR 50.0%
! CGCGTCCTACACTTTGGAAA+TGG + chr5_1:28348598-28348617 Msa0726830:three_prime_UTR 50.0%
TTAGGCTGAGTGCCATGACC+TGG + chr5_1:28343028-28343047 Msa0726830:intron 55.0%
TAGGCTGAGTGCCATGACCT+GGG + chr5_1:28343029-28343048 Msa0726830:intron 55.0%
!! AGAAGGCTCTGGAGCTCTAG+AGG + chr5_1:28344930-28344949 Msa0726830:CDS 55.0%
!! TGGAGCTCTAGAGGAACTCG+AGG + chr5_1:28344939-28344958 Msa0726830:CDS 55.0%
!! AGCTCTAGAGGAACTCGAGG+AGG + chr5_1:28344942-28344961 Msa0726830:CDS 55.0%
CTGCAGTATCGTAAGCGTGG+CGG - chr5_1:28345044-28345063 None:intergenic 55.0%
GTAAGCTGCGGTCATGAAGG+TGG - chr5_1:28345110-28345129 None:intergenic 55.0%
CAGGTAAGCTGCGGTCATGA+AGG - chr5_1:28345113-28345132 None:intergenic 55.0%
ATCCGTCTTCACCAGTGGTC+AGG + chr5_1:28345766-28345785 Msa0726830:intron 55.0%
TGCCTGACCACTGGTGAAGA+CGG - chr5_1:28345771-28345790 None:intergenic 55.0%
CTGGCATCTGCCAGTCATCT+AGG - chr5_1:28346191-28346210 None:intergenic 55.0%
CTACCCAGTGCCAATTTCGG+TGG + chr5_1:28347749-28347768 Msa0726830:intron 55.0%
AGCCCACCGAAATTGGCACT+GGG - chr5_1:28347755-28347774 None:intergenic 55.0%
TAGCCCACCGAAATTGGCAC+TGG - chr5_1:28347756-28347775 None:intergenic 55.0%
TAGTTCTCTCACTGCCTGCC+AGG - chr5_1:28347919-28347938 None:intergenic 55.0%
!! TTCCAGCTCAAGGAGCACCG+TGG + chr5_1:28344489-28344508 Msa0726830:CDS 60.0%
GAAGACTCCCTTGCCTTGGC+TGG + chr5_1:28347198-28347217 Msa0726830:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG - chr5_1:28347681-28347700 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + chr5_1:28347683-28347702 Msa0726830:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + chr5_1:28347688-28347707 Msa0726830:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + chr5_1:28347689-28347708 Msa0726830:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + chr5_1:28347696-28347715 Msa0726830:intron 60.0%
AGCCACGGTGCTCCTTGAGC+TGG - chr5_1:28344494-28344513 None:intergenic 65.0%
CACCACCAGGCCAACCCAAG+TGG - chr5_1:28347682-28347701 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG - chr5_1:28347695-28347714 None:intergenic 65.0%
!! GCAGCCCACTTGGGTTGGCC+TGG + chr5_1:28347674-28347693 Msa0726830:intron 70.0%
!! GCCCACTTGGGTTGGCCTGG+TGG + chr5_1:28347677-28347696 Msa0726830:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 28342372 28348671 28342372 ID=Msa0726830;Name=Msa0726830
chr5_1 mRNA 28342372 28348671 28342372 ID=Msa0726830-mRNA-1;Parent=Msa0726830;Name=Msa0726830-mRNA-1;_AED=0.22;_eAED=0.22;_QI=77|1|1|1|1|1|9|525|366
chr5_1 exon 28342372 28342583 28342372 ID=Msa0726830-mRNA-1:exon:9840;Parent=Msa0726830-mRNA-1
chr5_1 exon 28343272 28343489 28343272 ID=Msa0726830-mRNA-1:exon:9841;Parent=Msa0726830-mRNA-1
chr5_1 exon 28343950 28344064 28343950 ID=Msa0726830-mRNA-1:exon:9842;Parent=Msa0726830-mRNA-1
chr5_1 exon 28344465 28344554 28344465 ID=Msa0726830-mRNA-1:exon:9843;Parent=Msa0726830-mRNA-1
chr5_1 exon 28344892 28345062 28344892 ID=Msa0726830-mRNA-1:exon:9844;Parent=Msa0726830-mRNA-1
chr5_1 exon 28345151 28345270 28345151 ID=Msa0726830-mRNA-1:exon:9845;Parent=Msa0726830-mRNA-1
chr5_1 exon 28345648 28345758 28345648 ID=Msa0726830-mRNA-1:exon:9846;Parent=Msa0726830-mRNA-1
chr5_1 exon 28347924 28348005 28347924 ID=Msa0726830-mRNA-1:exon:9847;Parent=Msa0726830-mRNA-1
chr5_1 exon 28348088 28348671 28348088 ID=Msa0726830-mRNA-1:exon:9848;Parent=Msa0726830-mRNA-1
chr5_1 five_prime_UTR 28342372 28342448 28342372 ID=Msa0726830-mRNA-1:five_prime_utr;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28342449 28342583 28342449 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28343272 28343489 28343272 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28343950 28344064 28343950 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28344465 28344554 28344465 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28344892 28345062 28344892 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28345151 28345270 28345151 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28345648 28345758 28345648 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28347924 28348005 28347924 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 CDS 28348088 28348146 28348088 ID=Msa0726830-mRNA-1:cds;Parent=Msa0726830-mRNA-1
chr5_1 three_prime_UTR 28348147 28348671 28348147 ID=Msa0726830-mRNA-1:three_prime_utr;Parent=Msa0726830-mRNA-1
Gene Sequence

>Msa0726830

ATGGAACACGATGAAGACGAAGAACCACCTCTTGCTGTTGAGATTCAACAACATAACAACGATGAATCCATTTCTCAACAATCTTCTGTTGGTGTCACTCTCATCACTGGTTATCTTGGTGCTGGCAAATCCACGTTAGTGAATCATATATTGAACTCTCAACATGGGAAGAGGATTGCTGTGATATTGAATGAGTTTGGTGAGGAAATTGGAGTGGAAAGAGCATTGATAAATGAAGGGGAAAGTGGTGCAGTTGTTGAAGAATGGGTTGAACTTGCTAATGGCTGTATTTGTTGCACGGTTAAGCATAGTTTGGTTCAAGCCCTTGAGCAGCTTGTGCAGAGAAAAGAAAGGCTAGACCATATATTGCTGGAAGCTACTGGTTTGGCTAATCCAGCACCTTTGGCATCTATTCTTTGGTTGGATGAACAGTTGGAATCTGACGTAAAGCTTGATTCTATCGTCACCGTAGTAGATGCCAAAAATGTTCGCTTCCAGCTCAAGGAGCACCGTGGCTCATCTTCATTTCCTGAAGCATATTTTCAGATAGCATTTGCGGACATTGTAATTCTTAACAAGGTTGATTTGGTATCTGCAGAAGGCTCTGGAGCTCTAGAGGAACTCGAGGAGGAAATCCATAACATTAACACACTCGTAGAGATAATTCATTCTGTGCGATGTCAAGTTGACTTATCTAAGATTTTGAACCGCCACGCTTACGATACTGCACATGCTGAACATTTAGAAGCATTGTTAGAAGAAAGTCGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGCGTGAGAACCATATGCATCTGTGAGACAGGAACAGTTGATCTTGATAAGACTCGTATATGGCTAGAGGAGATTCTTTGGGAGAAGAAATATGATATGGATGTATACCGTTGCAAAGGAGTCTTAAATGTTCAAAACTCTGATGAATTGCATACTTTGCAGGCAGTGAGAGAACTATATGAGATCGTTCCTGCTCGAAAGTGGAAGAAAGAAGAAAACAGGATGAATAAGATAGTATTTATAGGTCATAATCTGAAAGAAGATGTCCTAATCAATGGCTTGAAAGCTCTTGCAACCTGTTAG

Protein sequence

>Msa0726830

MEHDEDEEPPLAVEIQQHNNDESISQQSSVGVTLITGYLGAGKSTLVNHILNSQHGKRIAVILNEFGEEIGVERALINEGESGAVVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLEATGLANPAPLASILWLDEQLESDVKLDSIVTVVDAKNVRFQLKEHRGSSSFPEAYFQIAFADIVILNKVDLVSAEGSGALEELEEEIHNINTLVEIIHSVRCQVDLSKILNRHAYDTAHAEHLEALLEESRSLSTKKLHDSGVRTICICETGTVDLDKTRIWLEEILWEKKYDMDVYRCKGVLNVQNSDELHTLQAVRELYEIVPARKWKKEENRMNKIVFIGHNLKEDVLINGLKALATC*