Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069060 | XP_003624347.1 | 91.597 | 238 | 15 | 2 | 1 | 234 | 1 | 237 | 1.50e-154 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069060 | sp|Q9LF14|CRS2B_ARATH | 68.750 | 224 | 68 | 2 | 10 | 232 | 2 | 224 | 5.94e-111 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069060 | G7KUB5 | 91.597 | 238 | 15 | 2 | 1 | 234 | 1 | 237 | 7.16e-155 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0046360 | Msa1069060 | 0.821804 | 3.322850e-53 | -8.615850e-47 |
| Msa0084630 | Msa1069060 | 0.804397 | 2.203011e-49 | -8.615850e-47 |
| Msa0107460 | Msa1069060 | 0.801174 | 1.019540e-48 | -8.615850e-47 |
| Msa0615850 | Msa1069060 | 0.800887 | 1.167379e-48 | -8.615850e-47 |
| Msa0623270 | Msa1069060 | 0.813493 | 2.488933e-51 | -8.615850e-47 |
| Msa0647710 | Msa1069060 | 0.804435 | 2.163614e-49 | -8.615850e-47 |
| Msa0649310 | Msa1069060 | 0.822191 | 2.703198e-53 | -8.615850e-47 |
| Msa0690530 | Msa1069060 | 0.813054 | 3.107517e-51 | -8.615850e-47 |
| Msa0197730 | Msa1069060 | 0.817417 | 3.334049e-52 | -8.615850e-47 |
| Msa0373220 | Msa1069060 | 0.806109 | 9.650721e-50 | -8.615850e-47 |
| Msa0421720 | Msa1069060 | 0.816337 | 5.826259e-52 | -8.615850e-47 |
| Msa0467080 | Msa1069060 | 0.820824 | 5.593200e-53 | -8.615850e-47 |
| Msa0468020 | Msa1069060 | 0.809296 | 2.029619e-50 | -8.615850e-47 |
| Msa1028780 | Msa1069060 | 0.804037 | 2.617559e-49 | -8.615850e-47 |
| Msa1040390 | Msa1069060 | 0.814696 | 1.350560e-51 | -8.615850e-47 |
| Msa1061520 | Msa1069060 | 0.822571 | 2.206199e-53 | -8.615850e-47 |
| Msa1069060 | Msa1088690 | 0.814595 | 1.422314e-51 | -8.615850e-47 |
| Msa1069060 | Msa1106830 | 0.800650 | 1.304489e-48 | -8.615850e-47 |
| Msa1069060 | Msa1157030 | 0.839190 | 1.837875e-57 | -8.615850e-47 |
| Msa1069060 | Msa1165810 | 0.803499 | 3.385235e-49 | -8.615850e-47 |
| Msa1069060 | Msa1173380 | 0.804567 | 2.030462e-49 | -8.615850e-47 |
| Msa1069060 | Msa1177960 | 0.807496 | 4.913109e-50 | -8.615850e-47 |
| Msa1069060 | Msa1183730 | 0.811885 | 5.598103e-51 | -8.615850e-47 |
| Msa1069060 | Msa1221540 | 0.815906 | 7.271271e-52 | -8.615850e-47 |
| Msa1069060 | Msa1244180 | 0.819913 | 9.048608e-53 | -8.615850e-47 |
| Msa1069060 | Msa1263590 | 0.817529 | 3.145514e-52 | -8.615850e-47 |
| Msa1069060 | Msa1263670 | 0.820086 | 8.259149e-53 | -8.615850e-47 |
| Msa1069060 | Msa1334020 | 0.826226 | 3.047717e-54 | -8.615850e-47 |
| Msa1069060 | Msa1356730 | 0.804764 | 1.846931e-49 | -8.615850e-47 |
| Msa1069060 | Msa1373390 | 0.802554 | 5.308517e-49 | -8.615850e-47 |
| Msa1069060 | Msa1388610 | 0.800122 | 1.671468e-48 | -8.615850e-47 |
| Msa1069060 | Msa1420600 | 0.808055 | 3.737805e-50 | -8.615850e-47 |
| Msa1069060 | Msa1425540 | 0.817193 | 3.743466e-52 | -8.615850e-47 |
| Msa0280500 | Msa1069060 | 0.809064 | 2.276103e-50 | -8.615850e-47 |
| Msa0311570 | Msa1069060 | 0.801237 | 9.899524e-49 | -8.615850e-47 |
| Msa0319720 | Msa1069060 | 0.810052 | 1.395897e-50 | -8.615850e-47 |
| Msa0327870 | Msa1069060 | 0.802411 | 5.682428e-49 | -8.615850e-47 |
| Msa0340440 | Msa1069060 | 0.807054 | 6.095516e-50 | -8.615850e-47 |
| Msa0495510 | Msa1069060 | 0.805112 | 1.562180e-49 | -8.615850e-47 |
| Msa0532880 | Msa1069060 | 0.828583 | 8.293955e-55 | -8.615850e-47 |
| Msa0553350 | Msa1069060 | 0.807618 | 4.628043e-50 | -8.615850e-47 |
| Msa0899700 | Msa1069060 | 0.806659 | 7.387104e-50 | -8.615850e-47 |
| Msa0938370 | Msa1069060 | 0.824449 | 8.023716e-54 | -8.615850e-47 |
| Msa0966410 | Msa1069060 | 0.816443 | 5.515434e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069060 | MtrunA17_Chr7g0250851 | 91.597 | 238 | 15 | 2 | 1 | 234 | 1 | 237 | 1.38e-158 | 440 |
| Msa1069060 | MtrunA17_Chr8g0385391 | 88.739 | 222 | 17 | 3 | 14 | 234 | 15 | 229 | 1.73e-139 | 391 |
| Msa1069060 | MtrunA17_Chr8g0378771 | 59.777 | 179 | 72 | 0 | 53 | 231 | 17 | 195 | 5.10e-79 | 237 |
| Msa1069060 | MtrunA17_Chr8g0390771 | 55.307 | 179 | 80 | 0 | 53 | 231 | 64 | 242 | 4.44e-75 | 229 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069060 | AT5G16140.2 | 68.750 | 224 | 68 | 2 | 10 | 232 | 2 | 224 | 6.04e-112 | 322 |
| Msa1069060 | AT5G16140.1 | 68.750 | 224 | 68 | 2 | 10 | 232 | 2 | 224 | 6.04e-112 | 322 |
| Msa1069060 | AT5G38290.2 | 65.801 | 231 | 77 | 2 | 1 | 231 | 5 | 233 | 4.05e-108 | 313 |
| Msa1069060 | AT5G38290.1 | 65.801 | 231 | 77 | 2 | 1 | 231 | 1 | 229 | 4.59e-108 | 312 |
| Msa1069060 | AT1G18440.1 | 57.222 | 180 | 77 | 0 | 53 | 232 | 94 | 273 | 1.09e-78 | 239 |
| Msa1069060 | AT5G19830.1 | 58.889 | 180 | 74 | 0 | 51 | 230 | 16 | 195 | 5.00e-77 | 233 |
| Msa1069060 | AT1G18440.2 | 61.905 | 105 | 40 | 0 | 53 | 157 | 94 | 198 | 1.89e-45 | 152 |
Find 68 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTCCCTCGCATATTAT+TGG | 0.228416 | 7_2:-64572500 | Msa1069060:five_prime_UTR |
| ATAATGAAAGTTCCTTCTTC+TGG | 0.257421 | 7_2:+64572328 | None:intergenic |
| CCTCGCATATTATTGGTTAA+TGG | 0.311466 | 7_2:-64572493 | Msa1069060:intron |
| GTGCCATGGTATTTATTTCC+AGG | 0.314037 | 7_2:+64572188 | None:intergenic |
| TCCTTGGCTTGTTGTTGGCT+TGG | 0.320294 | 7_2:-64572216 | Msa1069060:CDS |
| TTGATATGTACAGGTTCTAT+AGG | 0.328169 | 7_2:-64571824 | Msa1069060:intron |
| TGATGCCCATGTCCACCTTT+AGG | 0.328247 | 7_2:+64571353 | None:intergenic |
| CCTTGGCTTGTTGTTGGCTT+GGG | 0.334876 | 7_2:-64572215 | Msa1069060:CDS |
| TGAAGCTTTAAAACACCATT+TGG | 0.358207 | 7_2:+64571377 | None:intergenic |
| TGAGGTTTCACCAACAAAAC+TGG | 0.378074 | 7_2:+64571794 | None:intergenic |
| TTGTTTCAATAAAAGAAGAT+AGG | 0.378776 | 7_2:+64572582 | None:intergenic |
| CTAAAATTCATGTATGTTTG+AGG | 0.385508 | 7_2:+64571776 | None:intergenic |
| TATACTCCTTGGCTTGTTGT+TGG | 0.402188 | 7_2:-64572221 | Msa1069060:CDS |
| AAATAATTGATAGTCTTTCT+CGG | 0.408351 | 7_2:-64571988 | Msa1069060:CDS |
| GCTCTTAAATCCATGGTTCC+AGG | 0.408585 | 7_2:+64570437 | None:intergenic |
| ATGGCAGGTTGATGAGTCAT+TGG | 0.410508 | 7_2:-64570013 | Msa1069060:intron |
| AAATACGTACAACTAGAATA+TGG | 0.417215 | 7_2:+64571502 | None:intergenic |
| TTAAGACCTTAGTGCTCAAT+GGG | 0.429285 | 7_2:-64569972 | Msa1069060:CDS |
| TAATGAAAGTTCCTTCTTCT+GGG | 0.432772 | 7_2:+64572329 | None:intergenic |
| GTTAAGACCTTAGTGCTCAA+TGG | 0.445730 | 7_2:-64569973 | Msa1069060:CDS |
| ATACAGTCAAAAGCCTTGAT+TGG | 0.447917 | 7_2:-64571941 | Msa1069060:CDS |
| CTTTCTCTTCTCCACTCACT+CGG | 0.459861 | 7_2:-64572541 | Msa1069060:five_prime_UTR |
| AAAGTTCCTTCTTCTGGGAT+AGG | 0.460451 | 7_2:+64572334 | None:intergenic |
| TCAAAAGCCTTGATTGGAAT+AGG | 0.471258 | 7_2:-64571935 | Msa1069060:intron |
| CTTTAACCTATCCCAGAAGA+AGG | 0.477782 | 7_2:-64572340 | Msa1069060:CDS |
| TGCCATGGTATTTATTTCCA+GGG | 0.492429 | 7_2:+64572189 | None:intergenic |
| TCTGGGATAGGTTAAAGATA+AGG | 0.494074 | 7_2:+64572346 | None:intergenic |
| TGGAAATCCTCCTGGAACCA+TGG | 0.505805 | 7_2:-64570447 | Msa1069060:CDS |
| CTTCAACCTAAAGGTGGACA+TGG | 0.505877 | 7_2:-64571359 | Msa1069060:CDS |
| TCTACAAAAGTTCAGTTCAG+TGG | 0.508418 | 7_2:-64570408 | Msa1069060:CDS |
| CAGTTCAGTGGAAAGAAAGC+AGG | 0.510677 | 7_2:-64570396 | Msa1069060:intron |
| GTGGACATGGGCATCACAAT+GGG | 0.516901 | 7_2:-64571346 | Msa1069060:intron |
| GTAGGAATTGGAAATCCTCC+TGG | 0.517836 | 7_2:-64570455 | Msa1069060:intron |
| GGATAGGTTAAAGATAAGGT+TGG | 0.522902 | 7_2:+64572350 | None:intergenic |
| GTTGTTGGCTTGGGTAACCC+TGG | 0.525883 | 7_2:-64572206 | Msa1069060:CDS |
| TGATGCACCTATTCCAATCA+AGG | 0.526609 | 7_2:+64571928 | None:intergenic |
| GTAAAGTGGAATATACTCCT+TGG | 0.531430 | 7_2:-64572232 | Msa1069060:CDS |
| TCTCCATTGTTATTTGTCTG+TGG | 0.536146 | 7_2:+64572257 | None:intergenic |
| TTACATTGTGTCTAGTGCCA+TGG | 0.542992 | 7_2:+64572174 | None:intergenic |
| AAGAAAGGCTCTTAAATCCA+TGG | 0.547807 | 7_2:+64570430 | None:intergenic |
| AATGTGATTGGCCATTTGGA+TGG | 0.549742 | 7_2:-64570594 | Msa1069060:CDS |
| GATAGTCTTTCTCGGTCAGA+AGG | 0.550469 | 7_2:-64571980 | Msa1069060:CDS |
| GCTTTAAAACACCATTTGGA+AGG | 0.554239 | 7_2:+64571381 | None:intergenic |
| GATGAAACTAGCCTTCCAAA+TGG | 0.554723 | 7_2:-64571392 | Msa1069060:CDS |
| GTTAAACCCATTGAGCACTA+AGG | 0.557059 | 7_2:+64569966 | None:intergenic |
| AGCATACACAATGTGGTAAG+TGG | 0.565442 | 7_2:+64569835 | None:intergenic |
| TTCGTAGATTAGCCATGTGA+GGG | 0.573720 | 7_2:+64569788 | None:intergenic |
| TAACAATGGAGATAGTAAAG+TGG | 0.575813 | 7_2:-64572246 | Msa1069060:CDS |
| TTAAAGCTTCAACCTAAAGG+TGG | 0.579023 | 7_2:-64571365 | Msa1069060:CDS |
| GGTGGACATGGGCATCACAA+TGG | 0.579435 | 7_2:-64571347 | Msa1069060:CDS |
| AATCACGAGAACCATCCAAA+TGG | 0.582644 | 7_2:+64570583 | None:intergenic |
| CCCAAGCCAACAACAAGCCA+AGG | 0.596759 | 7_2:+64572215 | None:intergenic |
| GTGGAGAAGAGAAAGCGAAG+AGG | 0.602770 | 7_2:+64572549 | None:intergenic |
| CTGAATAGTAGCCGAGTGAG+TGG | 0.605011 | 7_2:+64572530 | None:intergenic |
| TTTCGTAGATTAGCCATGTG+AGG | 0.612987 | 7_2:+64569787 | None:intergenic |
| ACTCGATAATATGCAGCAAG+TGG | 0.616416 | 7_2:+64571534 | None:intergenic |
| ATCTAACCGATTGCAAGTCG+AGG | 0.617658 | 7_2:+64570558 | None:intergenic |
| AATGCTCACTCTCCCTCACA+TGG | 0.617837 | 7_2:-64569800 | Msa1069060:CDS |
| AATGTGGTAAGTGGTAAACA+TGG | 0.637460 | 7_2:+64569844 | None:intergenic |
| GTTGATGAGTCATTGGAGCA+AGG | 0.639313 | 7_2:-64570006 | Msa1069060:CDS |
| CATTAACCAATAATATGCGA+GGG | 0.640717 | 7_2:+64572494 | None:intergenic |
| TTCAACCTAAAGGTGGACAT+GGG | 0.647848 | 7_2:-64571358 | Msa1069060:CDS |
| AACCCTGGAAATAAATACCA+TGG | 0.650251 | 7_2:-64572191 | Msa1069060:CDS |
| CCATTAACCAATAATATGCG+AGG | 0.650856 | 7_2:+64572493 | None:intergenic |
| ACAACTAGAATATGGCGCAA+AGG | 0.665980 | 7_2:+64571510 | None:intergenic |
| GTTCCACAGACAAATAACAA+TGG | 0.675048 | 7_2:-64572260 | Msa1069060:CDS |
| GAATGCTAGCATACACAATG+TGG | 0.688471 | 7_2:+64569828 | None:intergenic |
| CTTAAATCCATGGTTCCAGG+AGG | 0.705799 | 7_2:+64570440 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTAAAATCAATGGT+AGG | + | chr7_2:64570518-64570537 | None:intergenic | 15.0% |
| !! | GTAGATAAAATTAAAATCAA+TGG | + | chr7_2:64570522-64570541 | None:intergenic | 15.0% |
| !! | TTTAATTATTTGATATGTAC+AGG | - | chr7_2:64570584-64570603 | Msa1069060:CDS | 15.0% |
| !!! | CTCATTTTTAATATTCTTAA+AGG | - | chr7_2:64570855-64570874 | Msa1069060:intron | 15.0% |
| !!! | TTTTTAATATTCTTAAAGGT+TGG | - | chr7_2:64570859-64570878 | Msa1069060:intron | 15.0% |
| !!! | TTTTAATATTCTTAAAGGTT+GGG | - | chr7_2:64570860-64570879 | Msa1069060:intron | 15.0% |
| !! | AATTAAGATATGTATAGTAA+GGG | - | chr7_2:64571265-64571284 | Msa1069060:intron | 15.0% |
| !!! | CTTTTTTTTTTTTTTGACTT+CGG | - | chr7_2:64571661-64571680 | Msa1069060:intron | 15.0% |
| !! | ATCAATTCAAATACAAAAAA+AGG | + | chr7_2:64572355-64572374 | None:intergenic | 15.0% |
| !! | AAATAAAAAGAAAACAGTAT+TGG | + | chr7_2:64572379-64572398 | None:intergenic | 15.0% |
| !! | TTGTTTCAATAAAAGAAGAT+AGG | + | chr7_2:64569838-64569857 | None:intergenic | 20.0% |
| !!! | AAATAATTGATAGTCTTTCT+CGG | - | chr7_2:64570429-64570448 | Msa1069060:CDS | 20.0% |
| !!! | AAACATACATGAATTTTAGT+GGG | - | chr7_2:64570645-64570664 | Msa1069060:intron | 20.0% |
| !! | TGTTACAGTTTAGAAATTTA+TGG | - | chr7_2:64570956-64570975 | Msa1069060:intron | 20.0% |
| !!! | GAAATTTATGGATTTTTCTT+TGG | - | chr7_2:64570968-64570987 | Msa1069060:intron | 20.0% |
| !! | TCAAATATGATTTCAAGAAT+AGG | - | chr7_2:64571149-64571168 | Msa1069060:intron | 20.0% |
| !! | GAATTAAGATATGTATAGTA+AGG | - | chr7_2:64571264-64571283 | Msa1069060:intron | 20.0% |
| !! | AAGAGTTAAAAGAATTTCAA+CGG | + | chr7_2:64571345-64571364 | None:intergenic | 20.0% |
| !!! | TATCTTAGTTTTACAGATTA+TGG | + | chr7_2:64571492-64571511 | None:intergenic | 20.0% |
| !! | TTTATGGATAATACAAAGAT+GGG | - | chr7_2:64571620-64571639 | Msa1069060:intron | 20.0% |
| !! | AAAAAAAGGATTGCAATATA+GGG | + | chr7_2:64571649-64571668 | None:intergenic | 20.0% |
| !! | AAAAAAAAGGATTGCAATAT+AGG | + | chr7_2:64571650-64571669 | None:intergenic | 20.0% |
| !! | CGAAGTCAAAAAAAAAAAAA+AGG | + | chr7_2:64571663-64571682 | None:intergenic | 20.0% |
| !! | TTAAATAAGTCAAGAAAACA+AGG | + | chr7_2:64571709-64571728 | None:intergenic | 20.0% |
| !!! | CTTTTTATTTTTTTAATGGC+AGG | - | chr7_2:64572389-64572408 | Msa1069060:intron | 20.0% |
| !! | ATGTCAATAGATTCAATTTA+GGG | - | chr7_2:64572478-64572497 | Msa1069060:intron | 20.0% |
| !! | CTATAATAACAAAAAACTAG+TGG | + | chr7_2:64572546-64572565 | None:intergenic | 20.0% |
| ! | TTGTACTTAATCTAACTTTG+TGG | - | chr7_2:64570382-64570401 | Msa1069060:intron | 25.0% |
| ! | CTAAAATTCATGTATGTTTG+AGG | + | chr7_2:64570644-64570663 | None:intergenic | 25.0% |
| !! | CAAACATACATGAATTTTAG+TGG | - | chr7_2:64570644-64570663 | Msa1069060:intron | 25.0% |
| !!! | AACATACATGAATTTTAGTG+GGG | - | chr7_2:64570646-64570665 | Msa1069060:intron | 25.0% |
| ! | AAATACGTACAACTAGAATA+TGG | + | chr7_2:64570918-64570937 | None:intergenic | 25.0% |
| ! | TTTCTAAACTGTAACAAAAC+AGG | + | chr7_2:64570952-64570971 | None:intergenic | 25.0% |
| !! | GTTTGTGGAAATTTTTATGT+AGG | - | chr7_2:64570997-64571016 | Msa1069060:intron | 25.0% |
| ! | TTACTTCATGAATAATGAGA+TGG | - | chr7_2:64571200-64571219 | Msa1069060:intron | 25.0% |
| !!! | TCTTTTAACTCTTAACAATG+AGG | - | chr7_2:64571352-64571371 | Msa1069060:CDS | 25.0% |
| ! | TAATTACTTAAATCTTGCCA+TGG | - | chr7_2:64571510-64571529 | Msa1069060:intron | 25.0% |
| ! | AATTACTTAAATCTTGCCAT+GGG | - | chr7_2:64571511-64571530 | Msa1069060:intron | 25.0% |
| !!! | TTTTCTCTACATTTTAGTGA+TGG | - | chr7_2:64571563-64571582 | Msa1069060:intron | 25.0% |
| ! | GTTTATGGATAATACAAAGA+TGG | - | chr7_2:64571619-64571638 | Msa1069060:intron | 25.0% |
| ! | GAAATTATGAAGTCTATAAC+TGG | - | chr7_2:64571776-64571795 | Msa1069060:CDS | 25.0% |
| ! | TACAGATTGAAAAATGTGAT+TGG | - | chr7_2:64571811-64571830 | Msa1069060:CDS | 25.0% |
| ! | TCCATAGATAAGAACAATTT+AGG | - | chr7_2:64572159-64572178 | Msa1069060:intron | 25.0% |
| ! | TCCTAAATTGTTCTTATCTA+TGG | + | chr7_2:64572163-64572182 | None:intergenic | 25.0% |
| !! | ACAATTTAGGATTTAGTTTC+TGG | - | chr7_2:64572172-64572191 | Msa1069060:intron | 25.0% |
| ! | CAAATTTGACTAAAATGACA+AGG | - | chr7_2:64572209-64572228 | Msa1069060:CDS | 25.0% |
| ! | AATTGAATCTATTGACATGA+TGG | + | chr7_2:64572476-64572495 | None:intergenic | 25.0% |
| ! | CATGTCAATAGATTCAATTT+AGG | - | chr7_2:64572477-64572496 | Msa1069060:intron | 25.0% |
| CATTAACCAATAATATGCGA+GGG | + | chr7_2:64569926-64569945 | None:intergenic | 30.0% | |
| TAATGAAAGTTCCTTCTTCT+GGG | + | chr7_2:64570091-64570110 | None:intergenic | 30.0% | |
| ATAATGAAAGTTCCTTCTTC+TGG | + | chr7_2:64570092-64570111 | None:intergenic | 30.0% | |
| !! | GATGTTTTAAGTGAATAACG+AGG | + | chr7_2:64570115-64570134 | None:intergenic | 30.0% |
| TAACAATGGAGATAGTAAAG+TGG | - | chr7_2:64570171-64570190 | Msa1069060:intron | 30.0% | |
| AAACACTTTAAGTGCATGTT+TGG | + | chr7_2:64570344-64570363 | None:intergenic | 30.0% | |
| TCAATGTTGCAATTAACCAT+TGG | + | chr7_2:64570558-64570577 | None:intergenic | 30.0% | |
| TTGATATGTACAGGTTCTAT+AGG | - | chr7_2:64570593-64570612 | Msa1069060:CDS | 30.0% | |
| CTTACTGTGATTCATCAATT+TGG | - | chr7_2:64570806-64570825 | Msa1069060:intron | 30.0% | |
| !! | TTTCTTTGGCTTTAAGTTTG+TGG | - | chr7_2:64570982-64571001 | Msa1069060:intron | 30.0% |
| !! | TGAAGCTTTAAAACACCATT+TGG | + | chr7_2:64571043-64571062 | None:intergenic | 30.0% |
| !!! | GTTTTAAAGCTTCAACCTAA+AGG | - | chr7_2:64571049-64571068 | Msa1069060:intron | 30.0% |
| AAGATATGTATAGTAAGGGT+TGG | - | chr7_2:64571269-64571288 | Msa1069060:intron | 30.0% | |
| AGATATGTATAGTAAGGGTT+GGG | - | chr7_2:64571270-64571289 | Msa1069060:intron | 30.0% | |
| !! | TGGTGGTGTCATATAATATA+AGG | - | chr7_2:64571307-64571326 | Msa1069060:intron | 30.0% |
| !! | TGGTGTCATATAATATAAGG+CGG | - | chr7_2:64571310-64571329 | Msa1069060:intron | 30.0% |
| ATAATATAAGGCGGATACAA+AGG | - | chr7_2:64571319-64571338 | Msa1069060:intron | 30.0% | |
| TTTAACTCTTAACAATGAGG+AGG | - | chr7_2:64571355-64571374 | Msa1069060:CDS | 30.0% | |
| AATATTATACAGGTTACCCA+TGG | + | chr7_2:64571530-64571549 | None:intergenic | 30.0% | |
| GTTGAGAGCAAATATTATAC+AGG | + | chr7_2:64571540-64571559 | None:intergenic | 30.0% | |
| TCATAATTTCCCAGTATAAG+AGG | + | chr7_2:64571766-64571785 | None:intergenic | 30.0% | |
| ! | AAATTGCGTTTTTACTTCGT+AGG | - | chr7_2:64571944-64571963 | Msa1069060:CDS | 30.0% |
| ! | ACTGAACTTTTGTAGAAGAA+AGG | + | chr7_2:64572005-64572024 | None:intergenic | 30.0% |
| GGCAAATTATAAGTTAGACA+AGG | - | chr7_2:64572230-64572249 | Msa1069060:CDS | 30.0% | |
| AAGGCAAATATTTAGACAGT+TGG | - | chr7_2:64572249-64572268 | Msa1069060:CDS | 30.0% | |
| ! | GAAGATAGGAGATTTTTCTC+TGG | + | chr7_2:64569824-64569843 | None:intergenic | 35.0% |
| CCATTAACCAATAATATGCG+AGG | + | chr7_2:64569927-64569946 | None:intergenic | 35.0% | |
| ! | CCTCGCATATTATTGGTTAA+TGG | - | chr7_2:64569924-64569943 | Msa1069060:intron | 35.0% |
| GGATAGGTTAAAGATAAGGT+TGG | + | chr7_2:64570070-64570089 | None:intergenic | 35.0% | |
| ! | TCTGGGATAGGTTAAAGATA+AGG | + | chr7_2:64570074-64570093 | None:intergenic | 35.0% |
| ! | ATCATTTTCTGTTCGCTGTT+CGG | - | chr7_2:64570135-64570154 | Msa1069060:intron | 35.0% |
| GTTCCACAGACAAATAACAA+TGG | - | chr7_2:64570157-64570176 | Msa1069060:intron | 35.0% | |
| !! | TCTCCATTGTTATTTGTCTG+TGG | + | chr7_2:64570163-64570182 | None:intergenic | 35.0% |
| GTAAAGTGGAATATACTCCT+TGG | - | chr7_2:64570185-64570204 | Msa1069060:intron | 35.0% | |
| AACCCTGGAAATAAATACCA+TGG | - | chr7_2:64570226-64570245 | Msa1069060:intron | 35.0% | |
| TGCCATGGTATTTATTTCCA+GGG | + | chr7_2:64570231-64570250 | None:intergenic | 35.0% | |
| CTTTGTGGATTCTCTATGTT+AGG | - | chr7_2:64570397-64570416 | Msa1069060:CDS | 35.0% | |
| ATACAGTCAAAAGCCTTGAT+TGG | - | chr7_2:64570476-64570495 | Msa1069060:intron | 35.0% | |
| TCAAAAGCCTTGATTGGAAT+AGG | - | chr7_2:64570482-64570501 | Msa1069060:intron | 35.0% | |
| TACTATATCCAACCTTCCAA+TGG | - | chr7_2:64570539-64570558 | Msa1069060:intron | 35.0% | |
| TGTTGCAATTAACCATTGGA+AGG | + | chr7_2:64570554-64570573 | None:intergenic | 35.0% | |
| !! | CATGAATTTTAGTGGGGAAT+CGG | - | chr7_2:64570652-64570671 | Msa1069060:intron | 35.0% |
| !! | GCTTTAAAACACCATTTGGA+AGG | + | chr7_2:64571039-64571058 | None:intergenic | 35.0% |
| TTAAAGCTTCAACCTAAAGG+TGG | - | chr7_2:64571052-64571071 | Msa1069060:intron | 35.0% | |
| CAGACAAGAGAATTCTACTT+TGG | + | chr7_2:64571429-64571448 | None:intergenic | 35.0% | |
| TCGCAACTTCTATGAGTTTA+TGG | - | chr7_2:64571604-64571623 | Msa1069060:intron | 35.0% | |
| ! | GAAAAATGTGATTGGCCATT+TGG | - | chr7_2:64571819-64571838 | Msa1069060:intron | 35.0% |
| CACTCTGATAAACAACTAAG+AGG | + | chr7_2:64571917-64571936 | None:intergenic | 35.0% | |
| ! | CGTTTTTACTTCGTAGGAAT+TGG | - | chr7_2:64571950-64571969 | Msa1069060:CDS | 35.0% |
| AAGAAAGGCTCTTAAATCCA+TGG | + | chr7_2:64571990-64572009 | None:intergenic | 35.0% | |
| TCTACAAAAGTTCAGTTCAG+TGG | - | chr7_2:64572009-64572028 | Msa1069060:intron | 35.0% | |
| ACACTTGATAGAAGACTAGA+AGG | + | chr7_2:64572052-64572071 | None:intergenic | 35.0% | |
| GGTAATAAACCTGAAAACTG+TGG | - | chr7_2:64572297-64572316 | Msa1069060:CDS | 35.0% | |
| TTAAGACCTTAGTGCTCAAT+GGG | - | chr7_2:64572445-64572464 | Msa1069060:intron | 35.0% | |
| AATGTGGTAAGTGGTAAACA+TGG | + | chr7_2:64572576-64572595 | None:intergenic | 35.0% | |
| TGCTTTCCCTCGCATATTAT+TGG | - | chr7_2:64569917-64569936 | Msa1069060:intron | 40.0% | |
| CTTTAACCTATCCCAGAAGA+AGG | - | chr7_2:64570077-64570096 | Msa1069060:intron | 40.0% | |
| !! | AAAGTTCCTTCTTCTGGGAT+AGG | + | chr7_2:64570086-64570105 | None:intergenic | 40.0% |
| !! | TATACTCCTTGGCTTGTTGT+TGG | - | chr7_2:64570196-64570215 | Msa1069060:intron | 40.0% |
| GTGCCATGGTATTTATTTCC+AGG | + | chr7_2:64570232-64570251 | None:intergenic | 40.0% | |
| TTACATTGTGTCTAGTGCCA+TGG | + | chr7_2:64570246-64570265 | None:intergenic | 40.0% | |
| GTGGATTCTCTATGTTAGGT+TGG | - | chr7_2:64570401-64570420 | Msa1069060:CDS | 40.0% | |
| TGATGCACCTATTCCAATCA+AGG | + | chr7_2:64570492-64570511 | None:intergenic | 40.0% | |
| GCAATTAACCATTGGAAGGT+TGG | + | chr7_2:64570550-64570569 | None:intergenic | 40.0% | |
| !!! | AGGAGAAGTACCAGTTTTGT+TGG | - | chr7_2:64570613-64570632 | Msa1069060:intron | 40.0% |
| TGAGGTTTCACCAACAAAAC+TGG | + | chr7_2:64570626-64570645 | None:intergenic | 40.0% | |
| ACTCGATAATATGCAGCAAG+TGG | + | chr7_2:64570886-64570905 | None:intergenic | 40.0% | |
| ACAACTAGAATATGGCGCAA+AGG | + | chr7_2:64570910-64570929 | None:intergenic | 40.0% | |
| !! | GATGAAACTAGCCTTCCAAA+TGG | - | chr7_2:64571025-64571044 | Msa1069060:intron | 40.0% |
| TTCAACCTAAAGGTGGACAT+GGG | - | chr7_2:64571059-64571078 | Msa1069060:intron | 40.0% | |
| AACTCTTAACAATGAGGAGG+TGG | - | chr7_2:64571358-64571377 | Msa1069060:CDS | 40.0% | |
| AATGAGGAGGTGGTATTATG+TGG | - | chr7_2:64571368-64571387 | Msa1069060:CDS | 40.0% | |
| ATGAGGAGGTGGTATTATGT+GGG | - | chr7_2:64571369-64571388 | Msa1069060:CDS | 40.0% | |
| GTTGTAGCAACTACTACTAG+AGG | + | chr7_2:64571405-64571424 | None:intergenic | 40.0% | |
| TAAGTCCTCTCCTCTTATAC+TGG | - | chr7_2:64571753-64571772 | Msa1069060:intron | 40.0% | |
| AAGTCCTCTCCTCTTATACT+GGG | - | chr7_2:64571754-64571773 | Msa1069060:intron | 40.0% | |
| ATTTCCCAGTATAAGAGGAG+AGG | + | chr7_2:64571761-64571780 | None:intergenic | 40.0% | |
| ! | AATGTGATTGGCCATTTGGA+TGG | - | chr7_2:64571823-64571842 | Msa1069060:intron | 40.0% |
| AATCACGAGAACCATCCAAA+TGG | + | chr7_2:64571837-64571856 | None:intergenic | 40.0% | |
| !! | GATTTTCCTCGACTTGCAAT+CGG | - | chr7_2:64571853-64571872 | Msa1069060:intron | 40.0% |
| CATAACACATGTAGACTGTG+AGG | + | chr7_2:64572136-64572155 | None:intergenic | 40.0% | |
| GTGTGACCTACAAAAGCAAT+AGG | - | chr7_2:64572271-64572290 | Msa1069060:CDS | 40.0% | |
| TGACCTACAAAAGCAATAGG+AGG | - | chr7_2:64572274-64572293 | Msa1069060:CDS | 40.0% | |
| GACCTACAAAAGCAATAGGA+GGG | - | chr7_2:64572275-64572294 | Msa1069060:CDS | 40.0% | |
| ACCTACAAAAGCAATAGGAG+GGG | - | chr7_2:64572276-64572295 | Msa1069060:CDS | 40.0% | |
| ! | ATCTTAGTGCCACAGTTTTC+AGG | + | chr7_2:64572309-64572328 | None:intergenic | 40.0% |
| GTTAAGACCTTAGTGCTCAA+TGG | - | chr7_2:64572444-64572463 | Msa1069060:intron | 40.0% | |
| GTTAAACCCATTGAGCACTA+AGG | + | chr7_2:64572454-64572473 | None:intergenic | 40.0% | |
| AGCATACACAATGTGGTAAG+TGG | + | chr7_2:64572585-64572604 | None:intergenic | 40.0% | |
| GAATGCTAGCATACACAATG+TGG | + | chr7_2:64572592-64572611 | None:intergenic | 40.0% | |
| CTTTCTCTTCTCCACTCACT+CGG | - | chr7_2:64569876-64569895 | Msa1069060:intron | 45.0% | |
| GATAGTCTTTCTCGGTCAGA+AGG | - | chr7_2:64570437-64570456 | Msa1069060:CDS | 45.0% | |
| AGACACACGCACACTGAAAT+TGG | - | chr7_2:64570727-64570746 | Msa1069060:intron | 45.0% | |
| ACGCACACTGAAATTGGTCA+TGG | - | chr7_2:64570733-64570752 | Msa1069060:intron | 45.0% | |
| CTTCAACCTAAAGGTGGACA+TGG | - | chr7_2:64571058-64571077 | Msa1069060:intron | 45.0% | |
| ATAGTAAGGGTTGGGCTTCT+AGG | - | chr7_2:64571278-64571297 | Msa1069060:intron | 45.0% | |
| ATCTAACCGATTGCAAGTCG+AGG | + | chr7_2:64571862-64571881 | None:intergenic | 45.0% | |
| GTAGGAATTGGAAATCCTCC+TGG | - | chr7_2:64571962-64571981 | Msa1069060:CDS | 45.0% | |
| CTTAAATCCATGGTTCCAGG+AGG | + | chr7_2:64571980-64571999 | None:intergenic | 45.0% | |
| GCTCTTAAATCCATGGTTCC+AGG | + | chr7_2:64571983-64572002 | None:intergenic | 45.0% | |
| CAGTTCAGTGGAAAGAAAGC+AGG | - | chr7_2:64572021-64572040 | Msa1069060:intron | 45.0% | |
| !! | ACCCCTCCTATTGCTTTTGT+AGG | + | chr7_2:64572280-64572299 | None:intergenic | 45.0% |
| !! | ATGGCAGGTTGATGAGTCAT+TGG | - | chr7_2:64572404-64572423 | Msa1069060:intron | 45.0% |
| ! | GTTGATGAGTCATTGGAGCA+AGG | - | chr7_2:64572411-64572430 | Msa1069060:intron | 45.0% |
| !!! | TTTTCTTTTTATTTTTTTAA+TGG | - | chr7_2:64572385-64572404 | Msa1069060:intron | 5.0% |
| GTGGAGAAGAGAAAGCGAAG+AGG | + | chr7_2:64569871-64569890 | None:intergenic | 50.0% | |
| CTGAATAGTAGCCGAGTGAG+TGG | + | chr7_2:64569890-64569909 | None:intergenic | 50.0% | |
| !! | TCCTTGGCTTGTTGTTGGCT+TGG | - | chr7_2:64570201-64570220 | Msa1069060:intron | 50.0% |
| !! | CCTTGGCTTGTTGTTGGCTT+GGG | - | chr7_2:64570202-64570221 | Msa1069060:intron | 50.0% |
| TGATGCCCATGTCCACCTTT+AGG | + | chr7_2:64571067-64571086 | None:intergenic | 50.0% | |
| GTGGACATGGGCATCACAAT+GGG | - | chr7_2:64571071-64571090 | Msa1069060:intron | 50.0% | |
| !! | GTTGGGCTTCTAGGATGTGT+TGG | - | chr7_2:64571287-64571306 | Msa1069060:intron | 50.0% |
| TGGAAATCCTCCTGGAACCA+TGG | - | chr7_2:64571970-64571989 | Msa1069060:CDS | 50.0% | |
| AATGCTCACTCTCCCTCACA+TGG | - | chr7_2:64572617-64572636 | Msa1069060:five_prime_UTR | 50.0% | |
| CCCAAGCCAACAACAAGCCA+AGG | + | chr7_2:64570205-64570224 | None:intergenic | 55.0% | |
| !! | GTTGTTGGCTTGGGTAACCC+TGG | - | chr7_2:64570211-64570230 | Msa1069060:intron | 55.0% |
| GGTGGACATGGGCATCACAA+TGG | - | chr7_2:64571070-64571089 | Msa1069060:intron | 55.0% | |
| !! | GGGCTTCTAGGATGTGTTGG+TGG | - | chr7_2:64571290-64571309 | Msa1069060:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 64569796 | 64572643 | 64569796 | ID=Msa1069060;Name=Msa1069060 |
| chr7_2 | mRNA | 64569796 | 64572643 | 64569796 | ID=Msa1069060-mRNA-1;Parent=Msa1069060;Name=Msa1069060-mRNA-1;_AED=0.15;_eAED=0.15;_QI=154|0.88|0.8|1|0.88|0.8|10|0|258 |
| chr7_2 | exon | 64569796 | 64569873 | 64569796 | ID=Msa1069060-mRNA-1:exon:13460;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64569960 | 64570028 | 64569960 | ID=Msa1069060-mRNA-1:exon:13459;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64570397 | 64570473 | 64570397 | ID=Msa1069060-mRNA-1:exon:13458;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64570565 | 64570623 | 64570565 | ID=Msa1069060-mRNA-1:exon:13457;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64571347 | 64571420 | 64571347 | ID=Msa1069060-mRNA-1:exon:13456;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64571512 | 64571562 | 64571512 | ID=Msa1069060-mRNA-1:exon:13455;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64571766 | 64571833 | 64571766 | ID=Msa1069060-mRNA-1:exon:13454;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64571936 | 64572020 | 64571936 | ID=Msa1069060-mRNA-1:exon:13453;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64572178 | 64572397 | 64572178 | ID=Msa1069060-mRNA-1:exon:13452;Parent=Msa1069060-mRNA-1 |
| chr7_2 | exon | 64572494 | 64572643 | 64572494 | ID=Msa1069060-mRNA-1:exon:13451;Parent=Msa1069060-mRNA-1 |
| chr7_2 | five_prime_UTR | 64572494 | 64572643 | 64572494 | ID=Msa1069060-mRNA-1:five_prime_utr;Parent=Msa1069060-mRNA-1 |
| chr7_2 | five_prime_UTR | 64572394 | 64572397 | 64572394 | ID=Msa1069060-mRNA-1:five_prime_utr;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64572178 | 64572393 | 64572178 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64571936 | 64572020 | 64571936 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64571766 | 64571833 | 64571766 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64571512 | 64571562 | 64571512 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64571347 | 64571420 | 64571347 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64570565 | 64570623 | 64570565 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64570397 | 64570473 | 64570397 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64569960 | 64570028 | 64569960 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| chr7_2 | CDS | 64569796 | 64569873 | 64569796 | ID=Msa1069060-mRNA-1:cds;Parent=Msa1069060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
