AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280500 MtrunA17_Chr2g0294391 95.294 425 19 1 1 425 1 424 0.0 785
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2_3:-15274709 Msa0280500:CDS
GCAGGCTTTCTTCAACTTGC+TGG 0.275625 2_3:-15275200 Msa0280500:intron
AATATTACCTTGCACTTGTA+TGG 0.276099 2_3:+15276220 None:intergenic
AGTCTCTCCAGAGAGGTAAT+TGG 0.280375 2_3:-15277331 Msa0280500:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2_3:-15274701 Msa0280500:CDS
AGGGAAGCTCTTGCTTTGAT+TGG 0.323169 2_3:-15274681 Msa0280500:CDS
CTTCAGTACTCTTGGTGTTT+CGG 0.323610 2_3:+15276596 None:intergenic
ACATCTTATGCTGCCTTAGA+AGG 0.333220 2_3:-15277038 Msa0280500:CDS
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2_3:+15275786 None:intergenic
GAAGAACTATGGCATGCTTT+AGG 0.338906 2_3:-15276021 Msa0280500:CDS
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2_3:-15275782 Msa0280500:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2_3:+15275843 None:intergenic
ATAGATTATTGACATTTAAC+AGG 0.344744 2_3:+15274657 None:intergenic
AGTTTGGTTTACACTCTTGC+TGG 0.350609 2_3:-15277254 Msa0280500:CDS
TATGCTGCCTTAGAAGGCCT+TGG 0.350897 2_3:-15277032 Msa0280500:CDS
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2_3:-15275637 Msa0280500:CDS
TCATAACCCAAGGCCTTCTA+AGG 0.373122 2_3:+15277025 None:intergenic
AATAGCCTTTGCTGCTCAAT+TGG 0.377573 2_3:-15275593 Msa0280500:CDS
TGCTAATGCAATCTCATTCC+AGG 0.384899 2_3:-15276649 Msa0280500:CDS
GGCATACATGTTCAGATTGT+TGG 0.392739 2_3:-15274786 Msa0280500:intron
ATGCTGCCTTAGAAGGCCTT+GGG 0.406090 2_3:-15277031 Msa0280500:CDS
GTAGACTGTTTGAAGAACTA+TGG 0.410606 2_3:-15276032 Msa0280500:CDS
TTGTTTGTTTCCAGAATACT+TGG 0.412544 2_3:-15275016 Msa0280500:intron
ACTAATGCTCACACAATTGA+TGG 0.413986 2_3:-15275173 Msa0280500:CDS
GTCCGATGAGTGGAGATATT+GGG 0.417237 2_3:-15275636 Msa0280500:CDS
GTTAAAACCTTCAGTACTCT+TGG 0.418097 2_3:+15276588 None:intergenic
TGATGCACCTCCACCATGTT+GGG 0.423445 2_3:+15274740 None:intergenic
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2_3:-15275620 Msa0280500:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2_3:-15275855 Msa0280500:CDS
GTCTCTCCAGAGAGGTAATT+GGG 0.449708 2_3:-15277330 Msa0280500:CDS
TGGAATGAGATTGCATTAGC+AGG 0.453245 2_3:+15276651 None:intergenic
CTTGATTGAAACTTTGATGT+TGG 0.455698 2_3:-15274619 Msa0280500:three_prime_UTR
TTTGTGAAGTAGATTTCTCC+TGG 0.459138 2_3:+15276631 None:intergenic
GGCTTTCTTCAACTTGCTGG+TGG 0.463509 2_3:-15275197 Msa0280500:CDS
GTGCTTAATTCCAGCAAAAG+TGG 0.464416 2_3:-15277447 Msa0280500:intron
CCATCACACGCTTTAATTAG+CGG 0.467340 2_3:-15274961 Msa0280500:CDS
GATCTTCACTTTCGCAAAGC+CGG 0.473240 2_3:-15276982 Msa0280500:intron
TTAATTAGCGGCATAGCCTA+TGG 0.484285 2_3:-15274949 Msa0280500:CDS
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2_3:+15274705 None:intergenic
TGTTGAAACAGAGATATTTG+TGG 0.497398 2_3:+15277550 None:intergenic
TGATGACGACGATGATGAAA+TGG 0.500055 2_3:+15277364 None:intergenic
GCTTCACCCAATTACCTCTC+TGG 0.500095 2_3:+15277324 None:intergenic
CAGTCCGATGGACAGTCCTC+AGG 0.509146 2_3:+15276699 None:intergenic
GTCATAACGGAGCGCTGCTA+TGG 0.513932 2_3:-15276456 Msa0280500:CDS
TAAGAACCTCATCAACACTT+TGG 0.520508 2_3:-15277396 Msa0280500:CDS
TCCACCATGTTGGGATTGCA+TGG 0.521874 2_3:+15274749 None:intergenic
TAGAAACTTCAACTTATGGC+AGG 0.529444 2_3:-15275778 Msa0280500:intron
GAAATGTGTTGTTCATCAGA+AGG 0.540952 2_3:-15277420 Msa0280500:CDS
TTTAGCCAATTGAGCAGCAA+AGG 0.545220 2_3:+15275588 None:intergenic
AAAGCAAAAGATAGACCTCC+TGG 0.545248 2_3:-15275568 Msa0280500:intron
ACGGAGCGCTGCTATGGCTG+TGG 0.547245 2_3:-15276450 Msa0280500:CDS
TTAGACGGCCGTCCGATGAG+TGG 0.552985 2_3:-15275646 Msa0280500:CDS
TTGATGCACCTCCACCATGT+TGG 0.553147 2_3:+15274739 None:intergenic
CTTAACAGAATTTGATCCTG+AGG 0.554620 2_3:-15276715 Msa0280500:intron
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2_3:-15274700 Msa0280500:CDS
TGTTCGTTGCAGATAATGGC+TGG 0.555418 2_3:-15277590 None:intergenic
CTTTCGCGCGTAGCCACCAT+AGG 0.556649 2_3:+15274933 None:intergenic
AATTGGGTGAAGCTCATTTG+TGG 0.561203 2_3:-15277314 Msa0280500:CDS
CCGCTAATTAAAGCGTGTGA+TGG 0.565743 2_3:+15274961 None:intergenic
CATGCAGGACGGAGTCATAA+CGG 0.567434 2_3:-15276469 Msa0280500:intron
ATGCAATCCCAACATGGTGG+AGG 0.572879 2_3:-15274747 Msa0280500:CDS
TTGGTTTACACTCTTGCTGG+AGG 0.575304 2_3:-15277251 Msa0280500:intron
TGATCCTGAGGACTGTCCAT+CGG 0.576334 2_3:-15276703 Msa0280500:CDS
GTTGTGAGTGCTGTGAATGA+AGG 0.582088 2_3:-15277078 Msa0280500:CDS
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2_3:-15275631 Msa0280500:CDS
CTATGGTGGCTACGCGCGAA+AGG 0.602405 2_3:-15274932 Msa0280500:intron
CGAAACACCAAGAGTACTGA+AGG 0.602463 2_3:-15276595 Msa0280500:intron
GGAATGAGATTGCATTAGCA+GGG 0.613865 2_3:+15276652 None:intergenic
CTCCCAATATCTCCACTCAT+CGG 0.614980 2_3:+15275634 None:intergenic
CAAGGGCGTGAACAGTCCGA+TGG 0.615557 2_3:+15276687 None:intergenic
GAAGCTCCAAAGTGTTGATG+AGG 0.621149 2_3:+15277390 None:intergenic
TTGAGATCCATACAAGTGCA+AGG 0.633756 2_3:-15276227 Msa0280500:intron
ATGTATAAACTAAAGTTAGA+CGG 0.636370 2_3:-15275661 Msa0280500:intron
AGATCCATGCAATCCCAACA+TGG 0.647702 2_3:-15274753 Msa0280500:CDS
CCTCTCTGGAGAGACTCAAG+TGG 0.651836 2_3:+15277338 None:intergenic
ATTAGCGGCATAGCCTATGG+TGG 0.654448 2_3:-15274946 Msa0280500:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2_3:+15275638 None:intergenic
TTGACACTGATCATAACCCA+AGG 0.690753 2_3:+15277015 None:intergenic
CCACTTGAGTCTCTCCAGAG+AGG 0.698123 2_3:-15277338 Msa0280500:CDS
TCCATGCAATCCCAACATGG+TGG 0.701127 2_3:-15274750 Msa0280500:CDS
GACGACGATGATGAAATGGA+AGG 0.701336 2_3:+15277368 None:intergenic
TGTGAATGAAGGAATTGAAG+TGG 0.703438 2_3:-15277067 Msa0280500:CDS
TCTGTTTCAACAAAACACAA+CGG 0.706458 2_3:-15277539 Msa0280500:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCTACATTTAAAACTTT+TGG - chr2_3:15275213-15275232 Msa0280500:intron 15.0%
!! TAAAACTTGTAATGTTGAAT+TGG - chr2_3:15275620-15275639 Msa0280500:CDS 20.0%
!!! ATCGTACTTATTTTATCATA+GGG + chr2_3:15275713-15275732 None:intergenic 20.0%
!!! TATCGTACTTATTTTATCAT+AGG + chr2_3:15275714-15275733 None:intergenic 20.0%
!! AATAAACATGGAATAGAATT+TGG + chr2_3:15276417-15276436 None:intergenic 20.0%
!! ATGTATAAACTAAAGTTAGA+CGG - chr2_3:15276457-15276476 Msa0280500:CDS 20.0%
!! ATGATAGATATAAATCCTAA+AGG + chr2_3:15276867-15276886 None:intergenic 20.0%
!! ATAGATTATTGACATTTAAC+AGG + chr2_3:15277464-15277483 None:intergenic 20.0%
! TGATATCAAAAATCTCAGTT+TGG - chr2_3:15274848-15274867 Msa0280500:intron 25.0%
! AATTCAAGAATTGGATTATG+TGG - chr2_3:15274975-15274994 Msa0280500:CDS 25.0%
!!! CTACATTTAAAACTTTTGGA+AGG - chr2_3:15275217-15275236 Msa0280500:intron 25.0%
! AAACTTTAATCTATGCTTAC+TGG - chr2_3:15275351-15275370 Msa0280500:intron 25.0%
!!! TCGTACTTATTTTATCATAG+GGG + chr2_3:15275712-15275731 None:intergenic 25.0%
! CGTTACACAAAACTAATTAA+GGG + chr2_3:15275774-15275793 None:intergenic 25.0%
! ACGTTACACAAAACTAATTA+AGG + chr2_3:15275775-15275794 None:intergenic 25.0%
! CAGTTATATTCTAGTATTTC+AGG + chr2_3:15275930-15275949 None:intergenic 25.0%
! TAAATATTAGAAGAGGTTGA+AGG + chr2_3:15276161-15276180 None:intergenic 25.0%
! TCAACCTCTTCTAATATTTA+AGG - chr2_3:15276161-15276180 Msa0280500:intron 25.0%
! CAACCTCTTCTAATATTTAA+GGG - chr2_3:15276162-15276181 Msa0280500:intron 25.0%
! AACCTCTTCTAATATTTAAG+GGG - chr2_3:15276163-15276182 Msa0280500:intron 25.0%
! ATTTACTATTGAAATGATCC+AGG - chr2_3:15276244-15276263 Msa0280500:CDS 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_3:15276335-15276354 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_3:15276336-15276355 Msa0280500:intron 25.0%
!!! TGGGTTTGTTAAAATAAACA+TGG + chr2_3:15276429-15276448 None:intergenic 25.0%
!! GTCTAACTTTAGTTTATACA+TGG + chr2_3:15276458-15276477 None:intergenic 25.0%
!!! ATTGATGGATTGAAAAAAGA+AGG - chr2_3:15276960-15276979 Msa0280500:intron 25.0%
!! AATTTAGAACAGAAACAGAA+TGG + chr2_3:15277249-15277268 None:intergenic 25.0%
!!! TTTCTGTTCTAAATTTTCTG+TGG - chr2_3:15277254-15277273 Msa0280500:CDS 25.0%
TGTTGAAACAGAGATATTTG+TGG + chr2_3:15274571-15274590 None:intergenic 30.0%
TCTGTTTCAACAAAACACAA+CGG - chr2_3:15274579-15274598 Msa0280500:three_prime_UTR 30.0%
AACCAAGCAAATTCAAGAAT+TGG - chr2_3:15274966-15274985 Msa0280500:CDS 30.0%
! ATCCAATTCTTGAATTTGCT+TGG + chr2_3:15274971-15274990 None:intergenic 30.0%
TTGAATAAGAACTGTCTTAC+CGG + chr2_3:15275158-15275177 None:intergenic 30.0%
AGGATCAAATTCTGTTAAGA+AGG + chr2_3:15275402-15275421 None:intergenic 30.0%
TTGAATTGGATTTAACATGC+AGG - chr2_3:15275634-15275653 Msa0280500:CDS 30.0%
!! CTTACTTTTCATATTGATCC+AGG - chr2_3:15275800-15275819 Msa0280500:CDS 30.0%
AATATTACCTTGCACTTGTA+TGG + chr2_3:15275901-15275920 None:intergenic 30.0%
AACCCCTTAAATATTAGAAG+AGG + chr2_3:15276168-15276187 None:intergenic 30.0%
TTCCATAAGTACTTGTTTCA+AGG - chr2_3:15276200-15276219 Msa0280500:intron 30.0%
ATTGTTGAATCTCCAACATT+AGG + chr2_3:15276278-15276297 None:intergenic 30.0%
AGTTTATACATGGCAAAGAT+GGG + chr2_3:15276448-15276467 None:intergenic 30.0%
TAGTTTATACATGGCAAAGA+TGG + chr2_3:15276449-15276468 None:intergenic 30.0%
TAAAATCTTATCCTGAGTTG+AGG + chr2_3:15276703-15276722 None:intergenic 30.0%
!! GGATAAGATTTTAACGAGAT+AGG - chr2_3:15276710-15276729 Msa0280500:CDS 30.0%
GACATGATATGAATCTATGA+TGG - chr2_3:15276794-15276813 Msa0280500:intron 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_3:15276896-15276915 Msa0280500:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_3:15277102-15277121 Msa0280500:CDS 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_3:15277115-15277134 None:intergenic 30.0%
CTTGATTGAAACTTTGATGT+TGG - chr2_3:15277499-15277518 Msa0280500:intron 30.0%
!! CATTTCTTATCCACTTTTGC+TGG + chr2_3:15274684-15274703 None:intergenic 35.0%
! GAAATGTGTTGTTCATCAGA+AGG - chr2_3:15274698-15274717 Msa0280500:CDS 35.0%
TAAGAACCTCATCAACACTT+TGG - chr2_3:15274722-15274741 Msa0280500:CDS 35.0%
TGTGAATGAAGGAATTGAAG+TGG - chr2_3:15275051-15275070 Msa0280500:intron 35.0%
CTTAACAGAATTTGATCCTG+AGG - chr2_3:15275403-15275422 Msa0280500:intron 35.0%
TTTGTGAAGTAGATTTCTCC+TGG + chr2_3:15275490-15275509 None:intergenic 35.0%
GTTAAAACCTTCAGTACTCT+TGG + chr2_3:15275533-15275552 None:intergenic 35.0%
ATTGGATTTAACATGCAGGA+CGG - chr2_3:15275638-15275657 Msa0280500:CDS 35.0%
! ATTTTATCATAGGGGCAAAC+TGG + chr2_3:15275704-15275723 None:intergenic 35.0%
! TTTTCATATTGATCCAGGAG+AGG - chr2_3:15275805-15275824 Msa0280500:CDS 35.0%
GTAGACTGTTTGAAGAACTA+TGG - chr2_3:15276086-15276105 Msa0280500:intron 35.0%
AGCCTTGAAACAAGTACTTA+TGG + chr2_3:15276205-15276224 None:intergenic 35.0%
CAACATTAGGTAAACTAACC+TGG + chr2_3:15276265-15276284 None:intergenic 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - chr2_3:15276263-15276282 Msa0280500:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_3:15276340-15276359 Msa0280500:intron 35.0%
TTGAATTGTGAATACGAACC+AGG + chr2_3:15276571-15276590 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+CGG + chr2_3:15276624-15276643 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_3:15276624-15276643 Msa0280500:CDS 35.0%
AAGATCTTATCCTGTCATGT+TGG - chr2_3:15276665-15276684 Msa0280500:CDS 35.0%
!! AAGATTTTAACGAGATAGGC+AGG - chr2_3:15276714-15276733 Msa0280500:intron 35.0%
GTCAAGTTATCGTATCATGA+TGG - chr2_3:15276751-15276770 Msa0280500:intron 35.0%
ATGTCTCAATCCAGTGTTTA+AGG + chr2_3:15276779-15276798 None:intergenic 35.0%
ACTAATGCTCACACAATTGA+TGG - chr2_3:15276945-15276964 Msa0280500:intron 35.0%
ATCACATAATGTGACTCTAG+TGG + chr2_3:15277306-15277325 None:intergenic 35.0%
GTCACATTATGTGATGACAT+TGG - chr2_3:15277311-15277330 Msa0280500:CDS 35.0%
GTGCTTAATTCCAGCAAAAG+TGG - chr2_3:15274671-15274690 Msa0280500:CDS 40.0%
! TGATGACGACGATGATGAAA+TGG + chr2_3:15274757-15274776 None:intergenic 40.0%
AATTGGGTGAAGCTCATTTG+TGG - chr2_3:15274804-15274823 Msa0280500:intron 40.0%
! CATTTGTGGTGCAAGTTTTG+AGG - chr2_3:15274818-15274837 Msa0280500:intron 40.0%
! AGTTTGGTTTACACTCTTGC+TGG - chr2_3:15274864-15274883 Msa0280500:intron 40.0%
ACATCTTATGCTGCCTTAGA+AGG - chr2_3:15275080-15275099 Msa0280500:intron 40.0%
TTGACACTGATCATAACCCA+AGG + chr2_3:15275106-15275125 None:intergenic 40.0%
GGAATGAGATTGCATTAGCA+GGG + chr2_3:15275469-15275488 None:intergenic 40.0%
TGGAATGAGATTGCATTAGC+AGG + chr2_3:15275470-15275489 None:intergenic 40.0%
TGCTAATGCAATCTCATTCC+AGG - chr2_3:15275469-15275488 Msa0280500:intron 40.0%
!! CTTCAGTACTCTTGGTGTTT+CGG + chr2_3:15275525-15275544 None:intergenic 40.0%
CTTACATATGTTACCTCTCC+TGG + chr2_3:15275821-15275840 None:intergenic 40.0%
TTGAGATCCATACAAGTGCA+AGG - chr2_3:15275891-15275910 Msa0280500:intron 40.0%
! GATGTATCGACACAAGGAAA+TGG + chr2_3:15276052-15276071 None:intergenic 40.0%
! TAGAAGGATGTATCGACACA+AGG + chr2_3:15276058-15276077 None:intergenic 40.0%
! GTGTCGATACATCCTTCTAT+AGG - chr2_3:15276059-15276078 Msa0280500:intron 40.0%
GAAGAACTATGGCATGCTTT+AGG - chr2_3:15276097-15276116 Msa0280500:intron 40.0%
AATAGCCTTTGCTGCTCAAT+TGG - chr2_3:15276525-15276544 Msa0280500:intron 40.0%
TTTAGCCAATTGAGCAGCAA+AGG + chr2_3:15276533-15276552 None:intergenic 40.0%
AAAGCAAAAGATAGACCTCC+TGG - chr2_3:15276550-15276569 Msa0280500:intron 40.0%
AATTGTGAATACGAACCAGG+AGG + chr2_3:15276568-15276587 None:intergenic 40.0%
CTCTATCATGACCATCAAAC+GGG + chr2_3:15276623-15276642 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_3:15276635-15276654 Msa0280500:CDS 40.0%
GATAGAGACGGATAGGATAT+GGG - chr2_3:15276636-15276655 Msa0280500:CDS 40.0%
GAGTTAGAAACCAACATGAC+AGG + chr2_3:15276678-15276697 None:intergenic 40.0%
TAGGCAGGATATATGTGACA+TGG - chr2_3:15276729-15276748 Msa0280500:intron 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_3:15276900-15276919 Msa0280500:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_3:15276910-15276929 None:intergenic 40.0%
CCATCACACGCTTTAATTAG+CGG - chr2_3:15277157-15277176 Msa0280500:intron 40.0%
TTAATTAGCGGCATAGCCTA+TGG - chr2_3:15277169-15277188 Msa0280500:intron 40.0%
GGCATACATGTTCAGATTGT+TGG - chr2_3:15277332-15277351 Msa0280500:CDS 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_3:15277409-15277428 Msa0280500:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_3:15277417-15277436 Msa0280500:CDS 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_3:15277418-15277437 Msa0280500:CDS 40.0%
!! GAAGCTCCAAAGTGTTGATG+AGG + chr2_3:15274731-15274750 None:intergenic 45.0%
GACGACGATGATGAAATGGA+AGG + chr2_3:15274753-15274772 None:intergenic 45.0%
AGTCTCTCCAGAGAGGTAAT+TGG - chr2_3:15274787-15274806 Msa0280500:intron 45.0%
GTCTCTCCAGAGAGGTAATT+GGG - chr2_3:15274788-15274807 Msa0280500:intron 45.0%
TTGGTTTACACTCTTGCTGG+AGG - chr2_3:15274867-15274886 Msa0280500:intron 45.0%
! GTTGTGAGTGCTGTGAATGA+AGG - chr2_3:15275040-15275059 Msa0280500:intron 45.0%
TCATAACCCAAGGCCTTCTA+AGG + chr2_3:15275096-15275115 None:intergenic 45.0%
GATCTTCACTTTCGCAAAGC+CGG - chr2_3:15275136-15275155 Msa0280500:CDS 45.0%
! CAGGGCAAACATTTTCGCAA+GGG + chr2_3:15275451-15275470 None:intergenic 45.0%
!! CGAAACACCAAGAGTACTGA+AGG - chr2_3:15275523-15275542 Msa0280500:intron 45.0%
CAGTCTACTCTGCCTATAGA+AGG + chr2_3:15276074-15276093 None:intergenic 45.0%
!! GAAGAGGTTGAAGGCACTTA+CGG + chr2_3:15276152-15276171 None:intergenic 45.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_3:15276345-15276364 Msa0280500:intron 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_3:15276483-15276502 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_3:15276482-15276501 Msa0280500:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_3:15276487-15276506 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_3:15276487-15276506 Msa0280500:intron 45.0%
TATTGGGAGAGGAGCAACTA+AGG - chr2_3:15276498-15276517 Msa0280500:intron 45.0%
TCTTCACAAGACCCGTTTGA+TGG - chr2_3:15276609-15276628 Msa0280500:CDS 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_3:15276629-15276648 Msa0280500:CDS 45.0%
TTCTAACTCAGCCTCAACTC+AGG - chr2_3:15276689-15276708 Msa0280500:CDS 45.0%
CATGATGGCTCCTTAAACAC+TGG - chr2_3:15276766-15276785 Msa0280500:intron 45.0%
CAGGATGAGAGAGACATGAT+AGG + chr2_3:15276831-15276850 None:intergenic 45.0%
CTATCATGTCTCTCTCATCC+TGG - chr2_3:15276829-15276848 Msa0280500:intron 45.0%
AATCCTAAAGGCCCGATCAA+TGG + chr2_3:15276855-15276874 None:intergenic 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_3:15276911-15276930 None:intergenic 45.0%
CCGCTAATTAAAGCGTGTGA+TGG + chr2_3:15277160-15277179 None:intergenic 45.0%
AGATCCATGCAATCCCAACA+TGG - chr2_3:15277365-15277384 Msa0280500:CDS 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_3:15277416-15277435 None:intergenic 45.0%
AGGGAAGCTCTTGCTTTGAT+TGG - chr2_3:15277437-15277456 Msa0280500:intron 45.0%
GCTTCACCCAATTACCTCTC+TGG + chr2_3:15274797-15274816 None:intergenic 50.0%
TATGCTGCCTTAGAAGGCCT+TGG - chr2_3:15275086-15275105 Msa0280500:intron 50.0%
ATGCTGCCTTAGAAGGCCTT+GGG - chr2_3:15275087-15275106 Msa0280500:intron 50.0%
TGATCCTGAGGACTGTCCAT+CGG - chr2_3:15275415-15275434 Msa0280500:intron 50.0%
! GCAGGGCAAACATTTTCGCA+AGG + chr2_3:15275452-15275471 None:intergenic 50.0%
CATGCAGGACGGAGTCATAA+CGG - chr2_3:15275649-15275668 Msa0280500:CDS 50.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_3:15276481-15276500 Msa0280500:intron 50.0%
CTCTCATCCTGGCCATTGAT+CGG - chr2_3:15276840-15276859 Msa0280500:intron 50.0%
TCTCATCCTGGCCATTGATC+GGG - chr2_3:15276841-15276860 Msa0280500:intron 50.0%
GCAGGCTTTCTTCAACTTGC+TGG - chr2_3:15276918-15276937 Msa0280500:intron 50.0%
!! GGCTTTCTTCAACTTGCTGG+TGG - chr2_3:15276921-15276940 Msa0280500:intron 50.0%
ATTAGCGGCATAGCCTATGG+TGG - chr2_3:15277172-15277191 Msa0280500:intron 50.0%
TCCATGCAATCCCAACATGG+TGG - chr2_3:15277368-15277387 Msa0280500:CDS 50.0%
TCCACCATGTTGGGATTGCA+TGG + chr2_3:15277372-15277391 None:intergenic 50.0%
ATGCAATCCCAACATGGTGG+AGG - chr2_3:15277371-15277390 Msa0280500:CDS 50.0%
TGATGCACCTCCACCATGTT+GGG + chr2_3:15277381-15277400 None:intergenic 50.0%
TTGATGCACCTCCACCATGT+TGG + chr2_3:15277382-15277401 None:intergenic 50.0%
! CCTCTCTGGAGAGACTCAAG+TGG + chr2_3:15274783-15274802 None:intergenic 55.0%
CCACTTGAGTCTCTCCAGAG+AGG - chr2_3:15274780-15274799 Msa0280500:intron 55.0%
!! GTCATAACGGAGCGCTGCTA+TGG - chr2_3:15275662-15275681 Msa0280500:intron 55.0%
TAAAGGCCCGATCAATGGCC+AGG + chr2_3:15276850-15276869 None:intergenic 55.0%
TGGCCATTGATCGGGCCTTT+AGG - chr2_3:15276849-15276868 Msa0280500:intron 55.0%
CAGTCCGATGGACAGTCCTC+AGG + chr2_3:15275422-15275441 None:intergenic 60.0%
! CAAGGGCGTGAACAGTCCGA+TGG + chr2_3:15275434-15275453 None:intergenic 60.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_3:15276472-15276491 Msa0280500:intron 60.0%
CTTTCGCGCGTAGCCACCAT+AGG + chr2_3:15277188-15277207 None:intergenic 60.0%
CTATGGTGGCTACGCGCGAA+AGG - chr2_3:15277186-15277205 Msa0280500:intron 60.0%
!! ACGGAGCGCTGCTATGGCTG+TGG - chr2_3:15275668-15275687 Msa0280500:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 15274543 15277597 15274543 ID=Msa0280500;Name=Msa0280500
chr2_3 mRNA 15274543 15277597 15274543 ID=Msa0280500-mRNA-1;Parent=Msa0280500;Name=Msa0280500-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|1|0.91|1|1|0.91|12|119|426
chr2_3 exon 15274543 15274793 15274543 ID=Msa0280500-mRNA-1:exon:6369;Parent=Msa0280500-mRNA-1
chr2_3 exon 15274933 15275024 15274933 ID=Msa0280500-mRNA-1:exon:6368;Parent=Msa0280500-mRNA-1
chr2_3 exon 15275135 15275218 15275135 ID=Msa0280500-mRNA-1:exon:6367;Parent=Msa0280500-mRNA-1
chr2_3 exon 15275569 15275668 15275569 ID=Msa0280500-mRNA-1:exon:6366;Parent=Msa0280500-mRNA-1
chr2_3 exon 15275779 15275874 15275779 ID=Msa0280500-mRNA-1:exon:6365;Parent=Msa0280500-mRNA-1
chr2_3 exon 15275990 15276059 15275990 ID=Msa0280500-mRNA-1:exon:6364;Parent=Msa0280500-mRNA-1
chr2_3 exon 15276228 15276318 15276228 ID=Msa0280500-mRNA-1:exon:6363;Parent=Msa0280500-mRNA-1
chr2_3 exon 15276415 15276484 15276415 ID=Msa0280500-mRNA-1:exon:6362;Parent=Msa0280500-mRNA-1
chr2_3 exon 15276596 15276729 15276596 ID=Msa0280500-mRNA-1:exon:6361;Parent=Msa0280500-mRNA-1
chr2_3 exon 15276983 15277132 15276983 ID=Msa0280500-mRNA-1:exon:6360;Parent=Msa0280500-mRNA-1
chr2_3 exon 15277252 15277455 15277252 ID=Msa0280500-mRNA-1:exon:6359;Parent=Msa0280500-mRNA-1
chr2_3 exon 15277540 15277597 15277540 ID=Msa0280500-mRNA-1:exon:6358;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15277540 15277597 15277540 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15277252 15277455 15277252 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15276983 15277132 15276983 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15276596 15276729 15276596 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15276415 15276484 15276415 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15276228 15276318 15276228 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15275990 15276059 15275990 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15275779 15275874 15275779 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15275569 15275668 15275569 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15275135 15275218 15275135 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15274933 15275024 15274933 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 CDS 15274662 15274793 15274662 ID=Msa0280500-mRNA-1:cds;Parent=Msa0280500-mRNA-1
chr2_3 three_prime_UTR 15274543 15274661 15274543 ID=Msa0280500-mRNA-1:three_prime_utr;Parent=Msa0280500-mRNA-1
Gene Sequence

>Msa0280500

ATGGCTGGTCTGAGATTTTTCTGCGCCACAAATATCTCTGTTTCAACAAAACACAACGCAAAAGTGGATAAGAAATGTGTTGTTCATCAGAAGGTTAAGAACCTCATCAACACTTTGGAGCTTCCTTCCATTTCATCATCGTCGTCATCAACTCCACTTGAGTCTCTCCAGAGAGGTAATTGGGTGAAGCTCATTTGTGGTGCAAGTTTTGAGGATGTTGTTGATATCAAAAATCTCAGTTTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCTGTTGTGAGTGCTGTGAATGAAGGAATTGAAGTGGCAAGAGACATCTTATGCTGCCTTAGAAGGCCTTGGGTTATGATCAGTGTCAATGATGATAAAGATCTTCACTTTCGCAAAGCCGAATTTGATCCTGAGGACTGTCCATCGGACTGTTCACGCCCTTGCGAAAATGTTTGCCCTGCTAATGCAATCTCATTCCAGGAGAAATCTACTTCACAAACTTCATGTAACACCGAAACACCAAGAGTACTGAAGGACGGAGTCATAACGGAGCGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGAGAGGTAACATATGTAAGAGATGCTGTTACAACTTCTGATCTCATCAAGAGAAATGATGTTGATGCTATTGAGATCCATACAAGTGCAAGGCAGAGTAGACTGTTTGAAGAACTATGGCATGCTTTAGGAGATTCAGTAGAAAATTTGAAGCTAGTAGCCGTTAGTTTACCTAATGTTGGAGATTCAACAATATCTTCTATGAACAAAATGTTCTCTATCATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCAATAGCCTTTGCTGCTCAATTGGCTAAAGCAAAAGATAGACCTCCTGGCTTTCTTCAACTTGCTGGTGGAACTAATGCTCACACAATTGATGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAATCAGTACATCTAATCCATCACACGCTTTAATTAGCGGCATAGCCTATGGTGGCTACGCGCGAAAGATTGTTGGTAGAGTATTGAGATCCATGCAATCCCAACATGGTGGAGGTGCATCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCTCTTGCTTTGATTGGACCTGTTAAATGTCAATAA

Protein sequence

>Msa0280500

MAGLRFFCATNISVSTKHNAKVDKKCVVHQKVKNLINTLELPSISSSSSSTPLESLQRGNWVKLICGASFEDVVDIKNLSLVYTLAGVDCIDCAADASVVSAVNEGIEVARDILCCLRRPWVMISVNDDKDLHFRKAEFDPEDCPSDCSRPCENVCPANAISFQEKSTSQTSCNTETPRVLKDGVITERCYGCGRCLPVCPYDKIREVTYVRDAVTTSDLIKRNDVDAIEIHTSARQSRLFEELWHALGDSVENLKLVAVSLPNVGDSTISSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAAQLAKAKDRPPGFLQLAGGTNAHTIDGLKKEGLFQTTSLKYLDHENSTISTSNPSHALISGIAYGGYARKIVGRVLRSMQSQHGGGASIEDHPEHLLLALREALALIGPVKCQ*