AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420600 MtrunA17_Chr4g0006191 79.762 252 24 4 1 225 1 252 8.64e-133 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420600 AT5G60540.1 56.522 253 79 5 4 225 3 255 2.12e-85 254

Find 67 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCTGTTGAAGATAAAA+AGG 0.242812 tig0024833:-16078 Msa1420600:intron
AAAACTCCACGGAATGTTTC+AGG 0.263425 tig0024833:+16191 None:intergenic
AGGGATGATTAAGGAATTAA+TGG 0.307293 tig0024833:+18660 None:intergenic
CGAGTATCAGCTGTCAATTC+AGG 0.312317 tig0024833:+13849 None:intergenic
TTCACCACCAGGGATGATTA+AGG 0.317717 tig0024833:+18651 None:intergenic
GGCCCTACGTCAATAATTGC+TGG 0.323344 tig0024833:+16158 None:intergenic
ATGACTTTCTTTAACGATCA+TGG 0.357625 tig0024833:-13601 Msa1420600:three_prime_UTR
CGACCTTCCTATCTTTCAAT+AGG 0.362563 tig0024833:-13632 Msa1420600:exon
TTAATGGTGAGAAGCTGTTC+TGG 0.370042 tig0024833:+18676 None:intergenic
TTAATTTATAAAATTTCCTT+TGG 0.376440 tig0024833:-13570 Msa1420600:three_prime_UTR
TTATCAGTTTCCGGCTTTGC+GGG 0.378655 tig0024833:-17837 Msa1420600:intron
GCATAGTTATTTCTTGAAGA+TGG 0.389396 tig0024833:-13734 Msa1420600:CDS
TTTGCGGGAGTTTGTGCAAA+TGG 0.395917 tig0024833:-17822 Msa1420600:CDS
TGTTTCAGGACCACCTTCCT+TGG 0.406689 tig0024833:+16205 None:intergenic
TCAGCTAGGACTTGAACTTC+TGG 0.407051 tig0024833:+16137 None:intergenic
ACTGTGCACAGGAATTTCTT+TGG 0.415918 tig0024833:-17380 Msa1420600:CDS
TTATAATGACCAATTATCAA+TGG 0.416320 tig0024833:+13386 None:intergenic
GTGTGGTCCTATTGAAAGAT+AGG 0.418750 tig0024833:+13625 None:intergenic
CAGGAATTTCTTTGGCAGCC+AGG 0.427750 tig0024833:-17372 Msa1420600:intron
GTTGGTGTTCTCGCTTTACA+AGG 0.427789 tig0024833:-18862 Msa1420600:intron
TTATTTGTACTCACTTCTGC+TGG 0.435763 tig0024833:+13673 None:intergenic
TTTATCAGTTTCCGGCTTTG+CGG 0.436334 tig0024833:-17838 Msa1420600:intron
CATAGTTATTTCTTGAAGAT+GGG 0.447901 tig0024833:-13733 Msa1420600:CDS
TCTAAGATCTAACGATTCTC+AGG 0.450656 tig0024833:+13539 None:intergenic
TTAAGAAGATTGGGTGTGAA+AGG 0.461216 tig0024833:-18715 Msa1420600:CDS
TGGTGGTGAAAGCACCACTA+TGG 0.467220 tig0024833:-18638 Msa1420600:CDS
TGCACAAACTCCCGCAAAGC+CGG 0.472068 tig0024833:+17827 None:intergenic
GCCCTACGTCAATAATTGCT+GGG 0.475950 tig0024833:+16159 None:intergenic
TTGCGGGAGTTTGTGCAAAT+GGG 0.487279 tig0024833:-17821 Msa1420600:CDS
TCAGATTCAAAGCTTTGAAA+CGG 0.493128 tig0024833:-16252 Msa1420600:intron
CCTTCCTTGGAGACGAGCTC+AGG 0.500108 tig0024833:+16218 None:intergenic
ATTAATTCCTTAATCATCCC+TGG 0.517436 tig0024833:-18658 Msa1420600:CDS
GCTACTCGAGGCCTCTTCTC+CGG 0.529040 tig0024833:+13702 None:intergenic
TTGAAGATGGGAAATGTGAC+CGG 0.530497 tig0024833:-13721 Msa1420600:CDS
ATAGTGGTGCTTTCACCACC+AGG 0.540919 tig0024833:+18640 None:intergenic
TTCAGCGAGTTTAGCCATAG+TGG 0.547805 tig0024833:+18624 None:intergenic
GTTATAGTTGCTGTGCGACA+AGG 0.550991 tig0024833:-13897 Msa1420600:CDS
TTCTCAGGCAATGTTTCCAA+AGG 0.557807 tig0024833:+13554 None:intergenic
GTTCAATACACATTGCAGCT+TGG 0.560056 tig0024833:+13319 None:intergenic
CCTGAGCTCGTCTCCAAGGA+AGG 0.574869 tig0024833:-16218 Msa1420600:CDS
GGGAAATGTGACCGGAGAAG+AGG 0.575399 tig0024833:-13713 Msa1420600:CDS
GACTTGATTGCACTGTGCAC+AGG 0.576833 tig0024833:-17391 Msa1420600:CDS
CACTCCACACAATATGGCGG+TGG 0.577231 tig0024833:-18884 None:intergenic
CCCCAGCAATTATTGACGTA+GGG 0.577921 tig0024833:-16160 Msa1420600:CDS
ACTGGTGGACAAGAACTTGT+TGG 0.583767 tig0024833:-17416 Msa1420600:CDS
GGTGGACAAGAACTTGTTGG+TGG 0.593412 tig0024833:-17413 Msa1420600:CDS
ATGATTTCAGGACAGAAGAC+TGG 0.594853 tig0024833:-17434 Msa1420600:intron
TGTGCGACAAGGGAACATAC+TGG 0.599628 tig0024833:-13886 Msa1420600:CDS
AGTACCTGAGCTCGTCTCCA+AGG 0.600137 tig0024833:-16222 Msa1420600:CDS
CCACACAATATGGCGGTGGT+TGG 0.602082 tig0024833:-18880 None:intergenic
GCCACTCTGACAGAAGGTAC+AGG 0.603479 tig0024833:+16110 None:intergenic
TTATAGTTGCTGTGCGACAA+GGG 0.613272 tig0024833:-13896 Msa1420600:CDS
AAGGTACAGGATAATCAGCT+AGG 0.622940 tig0024833:+16123 None:intergenic
TGCTGGAACAACGCTACTCG+AGG 0.626381 tig0024833:+13690 None:intergenic
ACTCGCTGAATATTTCAACC+TGG 0.638716 tig0024833:-18611 Msa1420600:intron
GGTCCTATTGAAAGATAGGA+AGG 0.645223 tig0024833:+13629 None:intergenic
CCCTACGTCAATAATTGCTG+GGG 0.645849 tig0024833:+16160 None:intergenic
CGTTAAAGAAAGTCATAGTG+TGG 0.647164 tig0024833:+13608 None:intergenic
AATTGACAGCTGATACTCGA+TGG 0.647353 tig0024833:-13845 Msa1420600:intron
GAACTCGCCACTCTGACAGA+AGG 0.651056 tig0024833:+16104 None:intergenic
GAGCTCGTCTCCAAGGAAGG+TGG 0.657634 tig0024833:-16215 Msa1420600:CDS
TCCTGTACCTTCTGTCAGAG+TGG 0.657983 tig0024833:-16111 Msa1420600:CDS
GCCCCAGCAATTATTGACGT+AGG 0.663150 tig0024833:-16161 Msa1420600:CDS
ATTTCAGGACAGAAGACTGG+TGG 0.674164 tig0024833:-17431 Msa1420600:intron
GGTGGTCCTGAAACATTCCG+TGG 0.679473 tig0024833:-16197 Msa1420600:CDS
AATTCCTTAATCATCCCTGG+TGG 0.708340 tig0024833:-18655 Msa1420600:CDS
TAGTGGTGCTTTCACCACCA+GGG 0.725360 tig0024833:+18641 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + tig0024833:16731-16750 None:intergenic 0.0%
!!! ATTACTTATATTTTATCATA+TGG - tig0024833:14024-14043 Msa1420600:intron 10.0%
!!! TTTTATTTTGTTTCATTTAT+AGG - tig0024833:14921-14940 Msa1420600:intron 10.0%
!!! TTAAGTAATTGTTTTATATT+TGG + tig0024833:15558-15577 None:intergenic 10.0%
!! ACTATTAATAAAATATAAGA+TGG + tig0024833:16245-16264 None:intergenic 10.0%
!!! CTTATATTTTATTAATAGTA+TGG - tig0024833:16246-16265 Msa1420600:intron 10.0%
!!! GTTATAGATAAATTATTTTT+AGG - tig0024833:17024-17043 Msa1420600:intron 10.0%
!! AATAAGTATATATACAAAAA+AGG + tig0024833:17128-17147 None:intergenic 10.0%
!!! AATATGTTTCTAAATATATA+TGG - tig0024833:18212-18231 Msa1420600:intron 10.0%
!! TTATAATGTTATATGATATA+TGG - tig0024833:18378-18397 Msa1420600:intron 10.0%
!! TTAATTTATAAAATTTCCTT+TGG - tig0024833:18594-18613 Msa1420600:intron 10.0%
!! TAAGTGATATAATATTTCTT+AGG - tig0024833:13933-13952 Msa1420600:intron 15.0%
!! ATAATCAATCAATAAATCAA+AGG + tig0024833:14971-14990 None:intergenic 15.0%
!! TAGTAAATATCTTATCATTT+AGG - tig0024833:15039-15058 Msa1420600:intron 15.0%
!! AAAACAATTACTTAAAGTTA+AGG - tig0024833:15563-15582 Msa1420600:intron 15.0%
!! AAACAATTACTTAAAGTTAA+GGG - tig0024833:15564-15583 Msa1420600:intron 15.0%
!! AGAAATTAAAAGAAGAATAA+AGG - tig0024833:16556-16575 Msa1420600:intron 15.0%
!! TGTTTAGATAAATTATTTGA+AGG - tig0024833:17053-17072 Msa1420600:intron 15.0%
!!! ATATAACATTATAACTTGTA+AGG + tig0024833:18372-18391 None:intergenic 15.0%
!!! AGAAAGTTTAATATTCTTTT+TGG - tig0024833:18648-18667 Msa1420600:CDS 15.0%
!!! GAAAGTTTAATATTCTTTTT+GGG - tig0024833:18649-18668 Msa1420600:CDS 15.0%
!! AGAAATGCATATTAATTCTA+AGG + tig0024833:13683-13702 None:intergenic 20.0%
!!! TAGGTTTTTGAATAATCTTA+TGG - tig0024833:13725-13744 Msa1420600:CDS 20.0%
!! TTAAAATCAACTGGAAAAAA+GGG - tig0024833:13850-13869 Msa1420600:CDS 20.0%
!!! GTGATATTTAACTATTTTGT+CGG + tig0024833:14155-14174 None:intergenic 20.0%
!! AAGGAAATAAAATATAAAGC+TGG + tig0024833:14874-14893 None:intergenic 20.0%
!! GTAAAAAAGAATAAGAGAAA+AGG + tig0024833:14893-14912 None:intergenic 20.0%
!! TGATAAGATATTTACTAACA+AGG + tig0024833:15036-15055 None:intergenic 20.0%
!!! TATTGTTCTAAATGAAATTC+CGG - tig0024833:15848-15867 Msa1420600:intron 20.0%
!!! TTGTAATTTTATAACTTCTC+AGG - tig0024833:16181-16200 Msa1420600:CDS 20.0%
!! AACCACTTAACTATAAAAAA+TGG - tig0024833:17745-17764 Msa1420600:intron 20.0%
!! TAGAAACATATTATATGTCA+TGG + tig0024833:18204-18223 None:intergenic 20.0%
!!! TTCAAATGTTATATTTTTGC+AGG - tig0024833:18408-18427 Msa1420600:intron 20.0%
!!! TTTTGGGATATAGTATATAT+TGG - tig0024833:18665-18684 Msa1420600:CDS 20.0%
!!! GTTTTTAATCCATTGATAAT+TGG - tig0024833:18769-18788 Msa1420600:intron 20.0%
!! TTATAATGACCAATTATCAA+TGG + tig0024833:18781-18800 None:intergenic 20.0%
! TTAGTAAAAGTGAATGAAGA+AGG + tig0024833:13402-13421 None:intergenic 25.0%
!!! TATTGCAGTTTTAAGAAGAT+TGG - tig0024833:13439-13458 Msa1420600:three_prime_UTR 25.0%
!!! ATTGCAGTTTTAAGAAGATT+GGG - tig0024833:13440-13459 Msa1420600:three_prime_UTR 25.0%
!!! AATTTGAGAGTATTTATACC+AGG + tig0024833:13574-13593 None:intergenic 25.0%
! ATTTAGTATAGTACAAATCC+TGG - tig0024833:13613-13632 Msa1420600:three_prime_UTR 25.0%
! TTTAGTATAGTACAAATCCT+GGG - tig0024833:13614-13633 Msa1420600:exon 25.0%
!!! CAGTTGATTTTAACTAGTTT+TGG + tig0024833:13843-13862 None:intergenic 25.0%
! CAAAACTAGTTAAAATCAAC+TGG - tig0024833:13841-13860 Msa1420600:intron 25.0%
! GTTAAAATCAACTGGAAAAA+AGG - tig0024833:13849-13868 Msa1420600:CDS 25.0%
!!! TTTCAGTTTTACTTTTTGAG+TGG - tig0024833:13876-13895 Msa1420600:CDS 25.0%
! GACAAAGTAGTTAAATACTA+TGG - tig0024833:14066-14085 Msa1420600:intron 25.0%
! AAAGTAGTTAAATACTATGG+TGG - tig0024833:14069-14088 Msa1420600:intron 25.0%
! TGTTTCAATTTATCAGTTTC+CGG - tig0024833:14318-14337 Msa1420600:intron 25.0%
! TTTGTAGAAAGTTACAAATG+CGG + tig0024833:14538-14557 None:intergenic 25.0%
! GTAACTTTCTACAAATATCA+TGG - tig0024833:14543-14562 Msa1420600:intron 25.0%
!!! AGAAACAAGGTTTTAAATTG+AGG + tig0024833:14599-14618 None:intergenic 25.0%
!! ATTCAACGTTATCCTTTTAT+TGG - tig0024833:14991-15010 Msa1420600:intron 25.0%
! TATTGGACTTAACCAATAAA+AGG + tig0024833:15006-15025 None:intergenic 25.0%
! ACTGCTAATAACTAACAAAA+GGG + tig0024833:15067-15086 None:intergenic 25.0%
! TACTGCTAATAACTAACAAA+AGG + tig0024833:15068-15087 None:intergenic 25.0%
!!! TTTACTTTTAGCAAAAGAGA+TGG + tig0024833:15619-15638 None:intergenic 25.0%
!! ATTGTTCTAAATGAAATTCC+GGG - tig0024833:15849-15868 Msa1420600:intron 25.0%
!!! AAAAAGGTTAGTTTTTGACA+CGG - tig0024833:16102-16121 Msa1420600:CDS 25.0%
! ACTGATCTTAAATTCACAAA+GGG + tig0024833:16150-16169 None:intergenic 25.0%
! TACTGATCTTAAATTCACAA+AGG + tig0024833:16151-16170 None:intergenic 25.0%
!! AATTTAAGATCAGTAGAGTT+CGG - tig0024833:16156-16175 Msa1420600:CDS 25.0%
! TGTTTGTGAATTGAAGTAAT+AGG - tig0024833:16271-16290 Msa1420600:intron 25.0%
! TTGAAGTAATAGGTTGTAAA+TGG - tig0024833:16281-16300 Msa1420600:intron 25.0%
!!! TCAACTGATCAGTTATTTTT+GGG + tig0024833:16692-16711 None:intergenic 25.0%
! AAAAAGGAAATTTCCACAAT+AGG + tig0024833:17112-17131 None:intergenic 25.0%
! GTATATATACTTATTCTCCT+TGG - tig0024833:17133-17152 Msa1420600:intron 25.0%
!! GTAACGGTAAACATTTTTAT+GGG + tig0024833:17186-17205 None:intergenic 25.0%
! TATAAGACTGGAAATTTACA+AGG + tig0024833:17208-17227 None:intergenic 25.0%
!! AAATTTCCAGTCTTATATGT+TGG - tig0024833:17211-17230 Msa1420600:intron 25.0%
! TACTGATATACTTCACTATT+AGG - tig0024833:17259-17278 Msa1420600:intron 25.0%
! TTACAGCATATATACTACAT+TGG + tig0024833:17537-17556 None:intergenic 25.0%
! ATTTCTTAAACTAGCAAGAA+TGG - tig0024833:17560-17579 Msa1420600:intron 25.0%
! TTTAGATTAAATGGTACATG+TGG + tig0024833:17643-17662 None:intergenic 25.0%
! GCAAACAAGTTTAGATTAAA+TGG + tig0024833:17652-17671 None:intergenic 25.0%
!!! GACCATTTTTTATAGTTAAG+TGG + tig0024833:17750-17769 None:intergenic 25.0%
!! TAGTTCTTAACTTGAAAAGA+TGG - tig0024833:17804-17823 Msa1420600:intron 25.0%
! AACTAAGTTATTATATCCAG+TGG + tig0024833:18162-18181 None:intergenic 25.0%
! CTAAATATATATGGTATGAC+AGG - tig0024833:18221-18240 Msa1420600:intron 25.0%
!! TATAACTTGTAAGGTTCAAA+CGG + tig0024833:18363-18382 None:intergenic 25.0%
! ATGTTATATGATATATGGAG+TGG - tig0024833:18383-18402 Msa1420600:intron 25.0%
!!! CATAGTTATTTCTTGAAGAT+GGG - tig0024833:18431-18450 Msa1420600:intron 25.0%
! GAAACAAATAAAAATGACAC+AGG + tig0024833:18817-18836 None:intergenic 25.0%
AGGGATGATTAAGGAATTAA+TGG + tig0024833:13507-13526 None:intergenic 30.0%
ATTAATTCCTTAATCATCCC+TGG - tig0024833:13506-13525 Msa1420600:three_prime_UTR 30.0%
ACATTTGATCGAAGAATTGT+AGG - tig0024833:13706-13725 Msa1420600:CDS 30.0%
!!! AACTAGTTTTGGACTCAATT+TGG + tig0024833:13832-13851 None:intergenic 30.0%
GACAAGTATAGACTTACTTT+AGG - tig0024833:13995-14014 Msa1420600:intron 30.0%
AGTATAGACTTACTTTAGGT+AGG - tig0024833:13999-14018 Msa1420600:intron 30.0%
GACAGAATAGTCGAATATTA+TGG - tig0024833:14112-14131 Msa1420600:intron 30.0%
AGAATAGTCGAATATTATGG+TGG - tig0024833:14115-14134 Msa1420600:intron 30.0%
ACAATTACAATATGCAGACA+CGG + tig0024833:14504-14523 None:intergenic 30.0%
CAAATGACAAACATGATTTC+AGG - tig0024833:14718-14737 Msa1420600:intron 30.0%
ACTAACAAGGAAAGAGATAT+TGG + tig0024833:15023-15042 None:intergenic 30.0%
GGTTTCTTCTAACTTAAACA+AGG + tig0024833:15233-15252 None:intergenic 30.0%
GTGAATCTTATCAGCTATAA+TGG + tig0024833:15658-15677 None:intergenic 30.0%
! AGATTCACAGAGTTTTTATG+TGG - tig0024833:15670-15689 Msa1420600:intron 30.0%
! ATTGTTCTAAATAACCCACT+TGG - tig0024833:15709-15728 Msa1420600:intron 30.0%
! TTGTTCTAAATAACCCACTT+GGG - tig0024833:15710-15729 Msa1420600:intron 30.0%
ATCTGAGTAAACATGTCATT+TGG + tig0024833:15898-15917 None:intergenic 30.0%
!! TCAGATTCAAAGCTTTGAAA+CGG - tig0024833:15912-15931 Msa1420600:intron 30.0%
TTCCTCTGTTGAAGATAAAA+AGG - tig0024833:16086-16105 Msa1420600:CDS 30.0%
! AACCTTTTTATCTTCAACAG+AGG + tig0024833:16091-16110 None:intergenic 30.0%
TGATCTTAAATTCACAAAGG+GGG + tig0024833:16148-16167 None:intergenic 30.0%
CTGATCTTAAATTCACAAAG+GGG + tig0024833:16149-16168 None:intergenic 30.0%
!! TGTAAATGGTGATTTGTTTC+AGG - tig0024833:16295-16314 Msa1420600:intron 30.0%
!! GTAAATGGTGATTTGTTTCA+GGG - tig0024833:16296-16315 Msa1420600:intron 30.0%
!!! TCTTTTGATAATGTCCTTCT+CGG - tig0024833:16403-16422 Msa1420600:intron 30.0%
ACAGCATAAAGAATGAACTA+GGG - tig0024833:16434-16453 Msa1420600:intron 30.0%
ATAAAGAATGAACTAGGGAT+AGG - tig0024833:16439-16458 Msa1420600:intron 30.0%
AACGAACATAACATAACAAC+TGG + tig0024833:16476-16495 None:intergenic 30.0%
CATTATTACTCTTTCTAACC+TGG + tig0024833:16637-16656 None:intergenic 30.0%
!! GTCAACTGATCAGTTATTTT+TGG + tig0024833:16693-16712 None:intergenic 30.0%
AGAGAAGTAGTTGTATTTGT+TGG + tig0024833:16827-16846 None:intergenic 30.0%
TCTAACACATTAACTAACCA+AGG - tig0024833:16844-16863 Msa1420600:intron 30.0%
CTATAATCCCAATAGAAACT+TGG + tig0024833:16957-16976 None:intergenic 30.0%
! GAAAAGAGTGTGTAGAAAAA+TGG - tig0024833:16995-17014 Msa1420600:intron 30.0%
!!! TGTTTTGATCTTTATTTGCC+TGG - tig0024833:17082-17101 Msa1420600:intron 30.0%
TATACTTATTCTCCTTGGAA+AGG - tig0024833:17138-17157 Msa1420600:intron 30.0%
AAAAATAAGGAACCTTTCCA+AGG + tig0024833:17153-17172 None:intergenic 30.0%
!! GGTAACGGTAAACATTTTTA+TGG + tig0024833:17187-17206 None:intergenic 30.0%
ACTGGAAATTTACAAGGTAA+CGG + tig0024833:17202-17221 None:intergenic 30.0%
! GGTGATTGACTATATCTTTT+TGG - tig0024833:17320-17339 Msa1420600:intron 30.0%
TAGCAGAATCACAAGTTTAT+AGG - tig0024833:17398-17417 Msa1420600:CDS 30.0%
! AAGTTTATAGGATTAGTGCA+AGG - tig0024833:17410-17429 Msa1420600:CDS 30.0%
TAGAAAACATAGTAACCACT+AGG + tig0024833:17462-17481 None:intergenic 30.0%
! AGTGGTTACTATGTTTTCTA+TGG - tig0024833:17462-17481 Msa1420600:intron 30.0%
! TAAACTAGCAAGAATGGATT+TGG - tig0024833:17566-17585 Msa1420600:intron 30.0%
! AATCTAAACTTGTTTGCTTG+AGG - tig0024833:17655-17674 Msa1420600:intron 30.0%
! ATCTAAACTTGTTTGCTTGA+GGG - tig0024833:17656-17675 Msa1420600:intron 30.0%
TTATAATGCACTGTTACGTA+CGG - tig0024833:17716-17735 Msa1420600:intron 30.0%
AGACTAGAAAAACTATGATC+AGG + tig0024833:17854-17873 None:intergenic 30.0%
TCTAGTACAAAAAGACAAGT+AGG + tig0024833:18094-18113 None:intergenic 30.0%
! TACTTGTCTTTTTGTACTAG+AGG - tig0024833:18093-18112 Msa1420600:intron 30.0%
GAGAATACAAATACGTAACA+CGG - tig0024833:18121-18140 Msa1420600:intron 30.0%
TTATTATATCCAGTGGCAAT+AGG + tig0024833:18155-18174 None:intergenic 30.0%
!! GCATAGTTATTTCTTGAAGA+TGG - tig0024833:18430-18449 Msa1420600:intron 30.0%
ATGACTTTCTTTAACGATCA+TGG - tig0024833:18563-18582 Msa1420600:intron 30.0%
TTAAGAAGATTGGGTGTGAA+AGG - tig0024833:13449-13468 Msa1420600:three_prime_UTR 35.0%
AAACACAAATGATTGATCCC+AGG + tig0024833:13634-13653 None:intergenic 35.0%
!!! CAGTTTTACTTTTTGAGTGG+CGG - tig0024833:13879-13898 Msa1420600:CDS 35.0%
GTAAAGTATGTTTGCAGTGT+CGG - tig0024833:14188-14207 Msa1420600:intron 35.0%
TAAAGTATGTTTGCAGTGTC+GGG - tig0024833:14189-14208 Msa1420600:intron 35.0%
!!! CTCTGCAAGGTTTTAATTTG+TGG - tig0024833:14433-14452 Msa1420600:intron 35.0%
GTGTCTGCATATTGTAATTG+TGG - tig0024833:14503-14522 Msa1420600:intron 35.0%
GAAAAGAGAAGAGAGAAACA+AGG + tig0024833:14612-14631 None:intergenic 35.0%
ATTTCTCAAACCCAACCTAA+GGG + tig0024833:14637-14656 None:intergenic 35.0%
TATTTCTCAAACCCAACCTA+AGG + tig0024833:14638-14657 None:intergenic 35.0%
! TCGTTAGATTTTTGTGTGAC+AGG + tig0024833:14684-14703 None:intergenic 35.0%
CGTCAAATACATGAATTACC+TGG + tig0024833:14813-14832 None:intergenic 35.0%
GGTAATTCATGTATTTGACG+TGG - tig0024833:14813-14832 Msa1420600:intron 35.0%
ACTAATCTCTCGAACTTTGT+GGG - tig0024833:15133-15152 Msa1420600:intron 35.0%
ATCGTATCAGAACTTAGAAG+AGG - tig0024833:15346-15365 Msa1420600:intron 35.0%
GACATGGAATAATTCTTCCT+AGG + tig0024833:15419-15438 None:intergenic 35.0%
TTGACAAAATAACCTCTGCA+AGG + tig0024833:15591-15610 None:intergenic 35.0%
! TCTTATCAGCTATAATGGAG+AGG + tig0024833:15653-15672 None:intergenic 35.0%
CTAAATTAGCCCACCTAAAT+TGG + tig0024833:15810-15829 None:intergenic 35.0%
TCCAAAATTATATCCTCTCC+CGG + tig0024833:15870-15889 None:intergenic 35.0%
AAAACATTATGCACAGAGCA+CGG - tig0024833:16360-16379 Msa1420600:intron 35.0%
!!! CTTTTGATAATGTCCTTCTC+GGG - tig0024833:16404-16423 Msa1420600:intron 35.0%
GACAGCATAAAGAATGAACT+AGG - tig0024833:16433-16452 Msa1420600:intron 35.0%
!!! ACTGATCAGTTATTTTTGGG+TGG + tig0024833:16689-16708 None:intergenic 35.0%
TTATTAGCGGTATATGCTAG+AGG + tig0024833:16907-16926 None:intergenic 35.0%
ATATACCGCTAATAAAGCCA+CGG - tig0024833:16912-16931 Msa1420600:intron 35.0%
TCCAACTTCCAAGTTTCTAT+TGG - tig0024833:16946-16965 Msa1420600:intron 35.0%
CCAACTTCCAAGTTTCTATT+GGG - tig0024833:16947-16966 Msa1420600:intron 35.0%
! ACACACTCTTTTCATTTGCT+CGG + tig0024833:16988-17007 None:intergenic 35.0%
ATGAGACCAACATATAAGAC+TGG + tig0024833:17220-17239 None:intergenic 35.0%
CTTAGTTGTCTATACTGACA+TGG - tig0024833:17282-17301 Msa1420600:intron 35.0%
TTGTCTATACTGACATGGAT+CGG - tig0024833:17287-17306 Msa1420600:intron 35.0%
ATTCTGCTACACATATACGA+TGG + tig0024833:17387-17406 None:intergenic 35.0%
! TTGAATTTTGTTCTGCCTAG+TGG - tig0024833:17444-17463 Msa1420600:intron 35.0%
! GTTTTCCAATTCTTCAACGA+GGG + tig0024833:17507-17526 None:intergenic 35.0%
! AGTTTTCCAATTCTTCAACG+AGG + tig0024833:17508-17527 None:intergenic 35.0%
TCTAGACTCCAGTAAAATTC+AGG + tig0024833:17599-17618 None:intergenic 35.0%
! TGAATTTTACTGGAGTCTAG+AGG - tig0024833:17598-17617 Msa1420600:intron 35.0%
! TCTAAACTTGTTTGCTTGAG+GGG - tig0024833:17657-17676 Msa1420600:intron 35.0%
AACTTGAAAAGATGGATGCT+TGG - tig0024833:17812-17831 Msa1420600:intron 35.0%
AAAAGATGGATGCTTGGATT+TGG - tig0024833:17818-17837 Msa1420600:CDS 35.0%
AAATCCCAGCAAAGAATGTT+GGG + tig0024833:17937-17956 None:intergenic 35.0%
! TTTGTCTTATTGTGCATGAG+AGG + tig0024833:17973-17992 None:intergenic 35.0%
AAGTTTAGAGAGTGATAGAG+AGG - tig0024833:18019-18038 Msa1420600:intron 35.0%
!! GAGAGGATGTAAAGAGTATT+TGG - tig0024833:18036-18055 Msa1420600:intron 35.0%
!! GGATGTAAAGAGTATTTGGA+AGG - tig0024833:18040-18059 Msa1420600:intron 35.0%
!! TAAAGAGTATTTGGAAGGAG+TGG - tig0024833:18045-18064 Msa1420600:intron 35.0%
TTATTTGTACTCACTTCTGC+TGG + tig0024833:18494-18513 None:intergenic 35.0%
CGTTAAAGAAAGTCATAGTG+TGG + tig0024833:18559-18578 None:intergenic 35.0%
! TCTAAGATCTAACGATTCTC+AGG + tig0024833:18628-18647 None:intergenic 35.0%
TCTTTCAACGAACACATAGC+AGG - tig0024833:13326-13345 Msa1420600:three_prime_UTR 40.0%
TTAATGGTGAGAAGCTGTTC+TGG + tig0024833:13491-13510 None:intergenic 40.0%
AATTCCTTAATCATCCCTGG+TGG - tig0024833:13509-13528 Msa1420600:three_prime_UTR 40.0%
ACTCGCTGAATATTTCAACC+TGG - tig0024833:13553-13572 Msa1420600:three_prime_UTR 40.0%
GCTCACTCAAGCTTAAAGTT+TGG + tig0024833:13802-13821 None:intergenic 40.0%
TTAAGCTTGAGTGAGCTTCA+AGG - tig0024833:13806-13825 Msa1420600:intron 40.0%
CACTTATATTAGAGCATGCC+AGG + tig0024833:13919-13938 None:intergenic 40.0%
ACCAGAATCGTGACTTGATT+CGG + tig0024833:14264-14283 None:intergenic 40.0%
!! CACGATTCTGGTATTGATGA+TGG - tig0024833:14272-14291 Msa1420600:intron 40.0%
TTTATCAGTTTCCGGCTTTG+CGG - tig0024833:14326-14345 Msa1420600:intron 40.0%
ATGATTTCAGGACAGAAGAC+TGG - tig0024833:14730-14749 Msa1420600:intron 40.0%
ACTGTGCACAGGAATTTCTT+TGG - tig0024833:14784-14803 Msa1420600:intron 40.0%
! ATTTGACGTGGCTTCTTTTG+TGG - tig0024833:14825-14844 Msa1420600:intron 40.0%
! TTTGACGTGGCTTCTTTTGT+GGG - tig0024833:14826-14845 Msa1420600:intron 40.0%
GACTAATCTCTCGAACTTTG+TGG - tig0024833:15132-15151 Msa1420600:intron 40.0%
ACTTAGAAGAGGCTATGTGA+AGG - tig0024833:15357-15376 Msa1420600:intron 40.0%
ATTCTTCCTAGGACCTATAG+TGG + tig0024833:15408-15427 None:intergenic 40.0%
GTCACAGGTTTAGTTAGACA+TGG + tig0024833:15435-15454 None:intergenic 40.0%
GTCTAACTAAACCTGTGACT+AGG - tig0024833:15436-15455 Msa1420600:intron 40.0%
ACAGTTATGAGCCTTTGTGT+AGG + tig0024833:15463-15482 None:intergenic 40.0%
CATATTTCCTGCTCGATTCT+TGG - tig0024833:15505-15524 Msa1420600:intron 40.0%
TCTAAATAACCCACTTGGGT+TGG - tig0024833:15714-15733 Msa1420600:intron 40.0%
TCTAAATGAAATTCCGGGAG+AGG - tig0024833:15854-15873 Msa1420600:intron 40.0%
! TCCGGGAGAGGATATAATTT+TGG - tig0024833:15866-15885 Msa1420600:intron 40.0%
AAAACTCCACGGAATGTTTC+AGG + tig0024833:15976-15995 None:intergenic 40.0%
AAGGTACAGGATAATCAGCT+AGG + tig0024833:16044-16063 None:intergenic 40.0%
AAGAATGAACTAGGGATAGG+AGG - tig0024833:16442-16461 Msa1420600:intron 40.0%
TCGTTAGTGTGATATCCACA+AGG - tig0024833:16498-16517 Msa1420600:intron 40.0%
CGTTAGTGTGATATCCACAA+GGG - tig0024833:16499-16518 Msa1420600:intron 40.0%
CTTCAATTCAGGGAGAAATG+GGG + tig0024833:16608-16627 None:intergenic 40.0%
CCTTCAATTCAGGGAGAAAT+GGG + tig0024833:16609-16628 None:intergenic 40.0%
TCCTTCAATTCAGGGAGAAA+TGG + tig0024833:16610-16629 None:intergenic 40.0%
CTGGATTGTCCTTCAATTCA+GGG + tig0024833:16618-16637 None:intergenic 40.0%
AATGATCTCACAACTTCCTG+AGG - tig0024833:16653-16672 Msa1420600:intron 40.0%
TATACCGCTAATAAAGCCAC+GGG - tig0024833:16913-16932 Msa1420600:intron 40.0%
CCCAATAGAAACTTGGAAGT+TGG + tig0024833:16950-16969 None:intergenic 40.0%
ATTTCCACAATAGGACATCC+AGG + tig0024833:17103-17122 None:intergenic 40.0%
! GGGCTGCTTTCTCAAAAATA+AGG + tig0024833:17166-17185 None:intergenic 40.0%
TAGTTCCCTCGTTGAAGAAT+TGG - tig0024833:17499-17518 Msa1420600:intron 40.0%
! GACGTACACCTGAATTTTAC+TGG - tig0024833:17588-17607 Msa1420600:intron 40.0%
GATGAGAAAGATAGAGAGAC+TGG + tig0024833:17877-17896 None:intergenic 40.0%
AAAGAATGTTGGGAAGGAGA+GGG + tig0024833:17927-17946 None:intergenic 40.0%
CAAATCCCAGCAAAGAATGT+TGG + tig0024833:17938-17957 None:intergenic 40.0%
CAACATTCTTTGCTGGGATT+TGG - tig0024833:17936-17955 Msa1420600:intron 40.0%
TCTTATTGTGCATGAGAGGA+AGG + tig0024833:17969-17988 None:intergenic 40.0%
TTATAGTTGCTGTGCGACAA+GGG - tig0024833:18268-18287 Msa1420600:intron 40.0%
AATTGACAGCTGATACTCGA+TGG - tig0024833:18319-18338 Msa1420600:intron 40.0%
TTGAAGATGGGAAATGTGAC+CGG - tig0024833:18443-18462 Msa1420600:intron 40.0%
CGACCTTCCTATCTTTCAAT+AGG - tig0024833:18532-18551 Msa1420600:intron 40.0%
GGTCCTATTGAAAGATAGGA+AGG + tig0024833:18538-18557 None:intergenic 40.0%
GTGTGGTCCTATTGAAAGAT+AGG + tig0024833:18542-18561 None:intergenic 40.0%
TTCTCAGGCAATGTTTCCAA+AGG + tig0024833:18613-18632 None:intergenic 40.0%
GTTCAATACACATTGCAGCT+TGG + tig0024833:18848-18867 None:intergenic 40.0%
! GTTGGTGTTCTCGCTTTACA+AGG - tig0024833:13302-13321 Msa1420600:three_prime_UTR 45.0%
TTCACCACCAGGGATGATTA+AGG + tig0024833:13516-13535 None:intergenic 45.0%
TTCAGCGAGTTTAGCCATAG+TGG + tig0024833:13543-13562 None:intergenic 45.0%
GCATGAACTGCATGTGTGTT+TGG - tig0024833:13766-13785 Msa1420600:intron 45.0%
TCCGAATCAAGTCACGATTC+TGG - tig0024833:14260-14279 Msa1420600:intron 45.0%
TTATCAGTTTCCGGCTTTGC+GGG - tig0024833:14327-14346 Msa1420600:intron 45.0%
TTTGCGGGAGTTTGTGCAAA+TGG - tig0024833:14342-14361 Msa1420600:intron 45.0%
TTGCGGGAGTTTGTGCAAAT+GGG - tig0024833:14343-14362 Msa1420600:intron 45.0%
TGCAAATGGGAAAGCCAGTT+TGG - tig0024833:14356-14375 Msa1420600:intron 45.0%
GCAAATGGGAAAGCCAGTTT+GGG - tig0024833:14357-14376 Msa1420600:intron 45.0%
CAAATGGGAAAGCCAGTTTG+GGG - tig0024833:14358-14377 Msa1420600:intron 45.0%
CAGGAAAATTAGTCCTGCAC+AGG + tig0024833:14386-14405 None:intergenic 45.0%
! CTGTGCAGGACTAATTTTCC+TGG - tig0024833:14384-14403 Msa1420600:intron 45.0%
!! CAACCCACCTGTAGCTTTAT+CGG + tig0024833:14410-14429 None:intergenic 45.0%
! AGCCACAACATCGTGGATTT+TGG - tig0024833:14473-14492 Msa1420600:intron 45.0%
! GCCACAACATCGTGGATTTT+GGG - tig0024833:14474-14493 Msa1420600:intron 45.0%
ACCCAAAATCCACGATGTTG+TGG + tig0024833:14478-14497 None:intergenic 45.0%
! CGTAATTTCAAGTGCGACTG+TGG - tig0024833:14573-14592 Msa1420600:intron 45.0%
! CTCTTCTCTTTTCCACCCTT+AGG - tig0024833:14619-14638 Msa1420600:intron 45.0%
! TCTCTTTTCCACCCTTAGGT+TGG - tig0024833:14623-14642 Msa1420600:intron 45.0%
! CTCTTTTCCACCCTTAGGTT+GGG - tig0024833:14624-14643 Msa1420600:intron 45.0%
ATTTCAGGACAGAAGACTGG+TGG - tig0024833:14733-14752 Msa1420600:intron 45.0%
! ACTGGTGGACAAGAACTTGT+TGG - tig0024833:14748-14767 Msa1420600:intron 45.0%
! TTGACGTGGCTTCTTTTGTG+GGG - tig0024833:14827-14846 Msa1420600:intron 45.0%
GAACTTTGTGGGACCTAAGT+GGG - tig0024833:15144-15163 Msa1420600:intron 45.0%
CGCAGTTGTATGCACAAGTT+CGG - tig0024833:15193-15212 Msa1420600:intron 45.0%
GCAGTTGTATGCACAAGTTC+GGG - tig0024833:15194-15213 Msa1420600:intron 45.0%
TCTAACTTAAACAAGGCCCC+AGG + tig0024833:15226-15245 None:intergenic 45.0%
CGTCTCATCTAAGAGGTCTT+GGG - tig0024833:15257-15276 Msa1420600:intron 45.0%
AGAAGAGGCTATGTGAAGGA+TGG - tig0024833:15361-15380 Msa1420600:intron 45.0%
GAAGAGGCTATGTGAAGGAT+GGG - tig0024833:15362-15381 Msa1420600:intron 45.0%
CTGTACATCCAGTCCACTAT+AGG - tig0024833:15392-15411 Msa1420600:intron 45.0%
TTTGTGTAGGACCTAGTCAC+AGG + tig0024833:15450-15469 None:intergenic 45.0%
TGTGACTAGGTCCTACACAA+AGG - tig0024833:15449-15468 Msa1420600:intron 45.0%
AAAGTTAAGGGTCCTTGCAG+AGG - tig0024833:15576-15595 Msa1420600:intron 45.0%
! ATTCTCTCCGGTGCCAATTT+AGG - tig0024833:15794-15813 Msa1420600:intron 45.0%
GGGCACGAATAAAAACTCCA+CGG + tig0024833:15987-16006 None:intergenic 45.0%
CCCTACGTCAATAATTGCTG+GGG + tig0024833:16007-16026 None:intergenic 45.0%
CCCCAGCAATTATTGACGTA+GGG - tig0024833:16004-16023 Msa1420600:intron 45.0%
GCCCTACGTCAATAATTGCT+GGG + tig0024833:16008-16027 None:intergenic 45.0%
TCAGCTAGGACTTGAACTTC+TGG + tig0024833:16030-16049 None:intergenic 45.0%
GGGCTTAATATCAACCCTTG+TGG + tig0024833:16516-16535 None:intergenic 45.0%
!! CAAGGGTTGATATTAAGCCC+TGG - tig0024833:16516-16535 Msa1420600:intron 45.0%
! GGTTGATATTAAGCCCTGGT+AGG - tig0024833:16520-16539 Msa1420600:intron 45.0%
TGATATTAAGCCCTGGTAGG+AGG - tig0024833:16523-16542 Msa1420600:intron 45.0%
GATATTAAGCCCTGGTAGGA+GGG - tig0024833:16524-16543 Msa1420600:intron 45.0%
ATATTAAGCCCTGGTAGGAG+GGG - tig0024833:16525-16544 Msa1420600:intron 45.0%
AGAATAATCCCCTCCTACCA+GGG + tig0024833:16536-16555 None:intergenic 45.0%
TAGAATAATCCCCTCCTACC+AGG + tig0024833:16537-16556 None:intergenic 45.0%
CCCATTTCTCCCTGAATTGA+AGG - tig0024833:16606-16625 Msa1420600:intron 45.0%
CCTGGATTGTCCTTCAATTC+AGG + tig0024833:16619-16638 None:intergenic 45.0%
CCTGAATTGAAGGACAATCC+AGG - tig0024833:16616-16635 Msa1420600:intron 45.0%
CTAACTGCAATAGCAGAGGT+AGG + tig0024833:16796-16815 None:intergenic 45.0%
CTCACTAACTGCAATAGCAG+AGG + tig0024833:16800-16819 None:intergenic 45.0%
AAAACCAACTCAGCAAGCCT+TGG + tig0024833:16864-16883 None:intergenic 45.0%
TTTGCCTGGATGTCCTATTG+TGG - tig0024833:17096-17115 Msa1420600:intron 45.0%
TACTGACATGGATCGGAACA+TGG - tig0024833:17294-17313 Msa1420600:intron 45.0%
ACTGACATGGATCGGAACAT+GGG - tig0024833:17295-17314 Msa1420600:intron 45.0%
!! CTTGAGGGGCATCTATGTTT+GGG - tig0024833:17671-17690 Msa1420600:intron 45.0%
CAAAGAATGTTGGGAAGGAG+AGG + tig0024833:17928-17947 None:intergenic 45.0%
TCCTTCCCAACATTCTTTGC+TGG - tig0024833:17929-17948 Msa1420600:intron 45.0%
CCTTCCCAACATTCTTTGCT+GGG - tig0024833:17930-17949 Msa1420600:intron 45.0%
CAAGTAGGAGAGCAGACATA+TGG + tig0024833:18079-18098 None:intergenic 45.0%
GTTATAGTTGCTGTGCGACA+AGG - tig0024833:18267-18286 Msa1420600:intron 45.0%
CGAGTATCAGCTGTCAATTC+AGG + tig0024833:18318-18337 None:intergenic 45.0%
TAGTGGTGCTTTCACCACCA+GGG + tig0024833:13526-13545 None:intergenic 50.0%
ATAGTGGTGCTTTCACCACC+AGG + tig0024833:13527-13546 None:intergenic 50.0%
!! TGGTGGTGAAAGCACCACTA+TGG - tig0024833:13526-13545 Msa1420600:three_prime_UTR 50.0%
GCGGCTCTCAATTGAAAACC+TGG - tig0024833:13898-13917 Msa1420600:CDS 50.0%
TTCCTGGCCGATAAAGCTAC+AGG - tig0024833:14400-14419 Msa1420600:intron 50.0%
TGGCCGATAAAGCTACAGGT+GGG - tig0024833:14404-14423 Msa1420600:intron 50.0%
!! AGGTGGGTTGTTTCTCTGCA+AGG - tig0024833:14420-14439 Msa1420600:intron 50.0%
CAGTTACAGCCACAACATCG+TGG - tig0024833:14466-14485 Msa1420600:intron 50.0%
TCTCAAACCCAACCTAAGGG+TGG + tig0024833:14634-14653 None:intergenic 50.0%
!! GGTGGACAAGAACTTGTTGG+TGG - tig0024833:14751-14770 Msa1420600:intron 50.0%
GACTTGATTGCACTGTGCAC+AGG - tig0024833:14773-14792 Msa1420600:intron 50.0%
CAGGAATTTCTTTGGCAGCC+AGG - tig0024833:14792-14811 Msa1420600:intron 50.0%
CGAACTTTGTGGGACCTAAG+TGG - tig0024833:15143-15162 Msa1420600:intron 50.0%
! TGAGTGTTTTCCGCCCACTT+AGG + tig0024833:15160-15179 None:intergenic 50.0%
! ACAAGTTCGGGTTCGAACCT+GGG - tig0024833:15206-15225 Msa1420600:intron 50.0%
ACCTCTTAGATGAGACGCAC+GGG + tig0024833:15254-15273 None:intergenic 50.0%
GACCTCTTAGATGAGACGCA+CGG + tig0024833:15255-15274 None:intergenic 50.0%
GCGTCTCATCTAAGAGGTCT+TGG - tig0024833:15256-15275 Msa1420600:intron 50.0%
TCCAGTCCACTATAGGTCCT+AGG - tig0024833:15399-15418 Msa1420600:intron 50.0%
!! TCCTAGGACCTATAGTGGAC+TGG + tig0024833:15403-15422 None:intergenic 50.0%
TCCTGCTCGATTCTTGGTTC+AGG - tig0024833:15511-15530 Msa1420600:intron 50.0%
ACCTGAACCAAGAATCGAGC+AGG + tig0024833:15515-15534 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - tig0024833:15728-15747 Msa1420600:intron 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - tig0024833:15733-15752 Msa1420600:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - tig0024833:15734-15753 Msa1420600:intron 50.0%
GATCCCAAGCCAATACCACT+AGG + tig0024833:15740-15759 None:intergenic 50.0%
!! AGTGGTATTGGCTTGGGATC+TGG - tig0024833:15740-15759 Msa1420600:intron 50.0%
!! GTGGTATTGGCTTGGGATCT+GGG - tig0024833:15741-15760 Msa1420600:intron 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - tig0024833:15782-15801 Msa1420600:intron 50.0%
! TCTCCGGTGCCAATTTAGGT+GGG - tig0024833:15798-15817 Msa1420600:intron 50.0%
TAGCCCACCTAAATTGGCAC+CGG + tig0024833:15804-15823 None:intergenic 50.0%
TGTTTCAGGACCACCTTCCT+TGG + tig0024833:15962-15981 None:intergenic 50.0%
GCCCCAGCAATTATTGACGT+AGG - tig0024833:16003-16022 Msa1420600:intron 50.0%
GGCCCTACGTCAATAATTGC+TGG + tig0024833:16009-16028 None:intergenic 50.0%
TCCTGTACCTTCTGTCAGAG+TGG - tig0024833:16053-16072 Msa1420600:intron 50.0%
GAGCACGGTTGAATACATGC+TGG - tig0024833:16375-16394 Msa1420600:intron 50.0%
GGGTGGAATAGATAAGCCTC+AGG + tig0024833:16672-16691 None:intergenic 50.0%
!! CTAACCAAGGCTTGCTGAGT+TGG - tig0024833:16857-16876 Msa1420600:intron 50.0%
!! ACAGCCCGTGGCTTTATTAG+CGG + tig0024833:16920-16939 None:intergenic 50.0%
!! GCTTGAGGGGCATCTATGTT+TGG - tig0024833:17670-17689 Msa1420600:intron 50.0%
!! AGGGGCATCTATGTTTGGGT+CGG - tig0024833:17675-17694 Msa1420600:intron 50.0%
CCCAGCAAAGAATGTTGGGA+AGG + tig0024833:17933-17952 None:intergenic 50.0%
TTGTGCATGAGAGGAAGGAG+AGG + tig0024833:17964-17983 None:intergenic 50.0%
! GACTGACTTCCTATTGCCAC+TGG - tig0024833:18143-18162 Msa1420600:intron 50.0%
TGCACAAACTCCCGCAAAGC+CGG + tig0024833:14340-14359 None:intergenic 55.0%
!! CACCTGTAGCTTTATCGGCC+AGG + tig0024833:14405-14424 None:intergenic 55.0%
CTGGCCGATAAAGCTACAGG+TGG - tig0024833:14403-14422 Msa1420600:intron 55.0%
TGCTGCGTGCGGAGGATATT+CGG + tig0024833:15107-15126 None:intergenic 55.0%
CTTTGTGGGACCTAAGTGGG+CGG - tig0024833:15147-15166 Msa1420600:intron 55.0%
! CACAAGTTCGGGTTCGAACC+TGG - tig0024833:15205-15224 Msa1420600:intron 55.0%
! CAAGTTCGGGTTCGAACCTG+GGG - tig0024833:15207-15226 Msa1420600:intron 55.0%
ACCCGTGCGTCTCATCTAAG+AGG - tig0024833:15250-15269 Msa1420600:intron 55.0%
ACCACTAGGCCAACCCAAGT+GGG + tig0024833:15726-15745 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG + tig0024833:15727-15746 None:intergenic 55.0%
TCGAACCTGAGACCTCAACG+AGG + tig0024833:15775-15794 None:intergenic 55.0%
! CTCTCCGGTGCCAATTTAGG+TGG - tig0024833:15797-15816 Msa1420600:intron 55.0%
AGTACCTGAGCTCGTCTCCA+AGG - tig0024833:15942-15961 Msa1420600:intron 55.0%
GGTGGTCCTGAAACATTCCG+TGG - tig0024833:15967-15986 Msa1420600:intron 55.0%
! GCCACTCTGACAGAAGGTAC+AGG + tig0024833:16057-16076 None:intergenic 55.0%
GAACTCGCCACTCTGACAGA+AGG + tig0024833:16063-16082 None:intergenic 55.0%
TGCTGTCAAGAAGCCCGAGA+AGG + tig0024833:16420-16439 None:intergenic 55.0%
GTTGGAAGCAATACAGCCCG+TGG + tig0024833:16932-16951 None:intergenic 55.0%
ACATGGATCGGAACATGGGC+AGG - tig0024833:17299-17318 Msa1420600:intron 55.0%
! GGGGCATCTATGTTTGGGTC+GGG - tig0024833:17676-17695 Msa1420600:intron 55.0%
GGGAAATGTGACCGGAGAAG+AGG - tig0024833:18451-18470 Msa1420600:intron 55.0%
TGCTGGAACAACGCTACTCG+AGG + tig0024833:18477-18496 None:intergenic 55.0%
CCTGCACAGGTTCCCCAAAC+TGG + tig0024833:14373-14392 None:intergenic 60.0%
CCAGTTTGGGGAACCTGTGC+AGG - tig0024833:14370-14389 Msa1420600:intron 60.0%
ATATCCTCCGCACGCAGCAG+CGG - tig0024833:15108-15127 Msa1420600:intron 60.0%
TTAGTCTCCGCTGCTGCGTG+CGG + tig0024833:15118-15137 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG - tig0024833:15722-15741 Msa1420600:intron 60.0%
! TGGGAGTGTGCTCCTCGTTG+AGG - tig0024833:15760-15779 Msa1420600:intron 60.0%
GTGCTCCTCGTTGAGGTCTC+AGG - tig0024833:15767-15786 Msa1420600:intron 60.0%
CCTTCCTTGGAGACGAGCTC+AGG + tig0024833:15949-15968 None:intergenic 60.0%
CCTGAGCTCGTCTCCAAGGA+AGG - tig0024833:15946-15965 Msa1420600:intron 60.0%
GAGCTCGTCTCCAAGGAAGG+TGG - tig0024833:15949-15968 Msa1420600:intron 60.0%
GCTACTCGAGGCCTCTTCTC+CGG + tig0024833:18465-18484 None:intergenic 60.0%
GTCTCCGCTGCTGCGTGCGG+AGG + tig0024833:15115-15134 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024833 gene 13293 18893 13293 ID=Msa1420600;Name=Msa1420600
tig0024833 mRNA 13293 18893 13293 ID=Msa1420600-mRNA-1;Parent=Msa1420600;Name=Msa1420600-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.57|1|0.66|0.71|7|340|225
tig0024833 exon 13293 13756 13293 ID=Msa1420600-mRNA-1:exon:1634;Parent=Msa1420600-mRNA-1
tig0024833 exon 13846 13943 13846 ID=Msa1420600-mRNA-1:exon:1633;Parent=Msa1420600-mRNA-1
tig0024833 exon 16079 16262 16079 ID=Msa1420600-mRNA-1:exon:1632;Parent=Msa1420600-mRNA-1
tig0024833 exon 17373 17446 17373 ID=Msa1420600-mRNA-1:exon:1631;Parent=Msa1420600-mRNA-1
tig0024833 exon 17814 17852 17814 ID=Msa1420600-mRNA-1:exon:1630;Parent=Msa1420600-mRNA-1
tig0024833 exon 18612 18739 18612 ID=Msa1420600-mRNA-1:exon:1629;Parent=Msa1420600-mRNA-1
tig0024833 exon 18863 18893 18863 ID=Msa1420600-mRNA-1:exon:1628;Parent=Msa1420600-mRNA-1
tig0024833 CDS 18863 18893 18863 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 CDS 18612 18739 18612 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 CDS 17814 17852 17814 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 CDS 17373 17446 17373 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 CDS 16079 16262 16079 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 CDS 13846 13943 13846 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 CDS 13633 13756 13633 ID=Msa1420600-mRNA-1:cds;Parent=Msa1420600-mRNA-1
tig0024833 three_prime_UTR 13293 13632 13293 ID=Msa1420600-mRNA-1:three_prime_utr;Parent=Msa1420600-mRNA-1
Gene Sequence

>Msa1420600

ATGGCGGTGGTTGGTGTTCTCGCTTTACAAGTTTTAAGAAGATTGGGTGTGAAAGGAGTTGAGATTCGAAAACCAGAACAGCTTCTCACCATTAATTCCTTAATCATCCCTGGTGGTGAAAGCACCACTATGGCTAAACTCGCTGAATATTTCAACCTGTTTCCGGCTTTGCGGGAGTTTGTGCAAATGGGAAAGCCAGACAGAAGACTGGTGGACAAGAACTTGTTGGTGGACTTGATTGCACTGTGCACAGGAATTTCTTTGGCAGCCAGCTTTGAAACGGAGCTTGCAGTACCTGAGCTCGTCTCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAGTTTTTATTCGTGCCCCAGCAATTATTGACGTAGGGCCAGAAGTTCAAGTCCTAGCTGATTATCCTGTACCTTCTGTCAGAGTGGCGAGTTCTGATTCCTCTGTTGAAGATAAAAAGGAGAATGCTGATGAAAAAAGCAAAGTTATAGTTGCTGTGCGACAAGGGAACATACTGGCGACTGCTTTTCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTGAAGATGGGAAATGTGACCGGAGAAGAGGCCTCGAGTAGCGTTGTTCCAGCAGAAGTGAGTACAAATAATAAGCTACAATCACAGAACGACCTTCCTATCTTTCAATAG

Protein sequence

>Msa1420600

MAVVGVLALQVLRRLGVKGVEIRKPEQLLTINSLIIPGGESTTMAKLAEYFNLFPALREFVQMGKPDRRLVDKNLLVDLIALCTGISLAASFETELAVPELVSKEGGPETFRGVFIRAPAIIDVGPEVQVLADYPVPSVRVASSDSSVEDKKENADEKSKVIVAVRQGNILATAFHPELTADTRWHSYFLKMGNVTGEEASSSVVPAEVSTNNKLQSQNDLPIFQ*