AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0311570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311570 MtrunA17_Chr2g0280611 93.991 233 12 1 1 231 1 233 2.88e-164 452
Msa0311570 MtrunA17_Chr4g0067641 62.727 110 41 0 75 184 79 188 3.61e-49 162
Msa0311570 MtrunA17_Chr1g0166671 52.518 139 58 2 79 209 76 214 7.96e-45 149
Msa0311570 MtrunA17_Chr1g0187251 48.921 139 63 3 79 209 94 232 6.47e-42 142
Msa0311570 MtrunA17_Chr2g0277431 55.039 129 57 1 76 203 115 243 4.09e-41 146
Msa0311570 MtrunA17_Chr2g0316311 51.261 119 52 2 75 193 85 197 1.88e-36 131
Msa0311570 MtrunA17_Chr1g0148081 36.150 213 107 5 1 211 28 213 4.33e-36 129
Msa0311570 MtrunA17_Chr6g0467031 33.758 157 86 3 23 178 30 169 7.31e-24 94.4
Msa0311570 MtrunA17_Chr2g0316321 43.564 101 42 4 75 175 74 159 1.15e-20 85.1
Msa0311570 MtrunA17_Chr1g0198431 32.432 111 75 0 74 184 68 178 4.70e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0311570 AT1G11430.1 83.889 180 28 1 51 229 53 232 4.62e-109 313
Msa0311570 AT3G06790.2 62.727 110 40 1 75 184 84 192 1.81e-46 154
Msa0311570 AT3G06790.1 62.727 110 40 1 75 184 84 192 2.19e-46 154
Msa0311570 AT1G32580.1 50.355 141 59 3 79 209 87 226 3.16e-43 145
Msa0311570 AT2G35240.1 56.604 106 46 0 79 184 90 195 4.60e-42 143
Msa0311570 AT4G20020.2 60.550 109 41 2 76 182 78 186 1.77e-38 138
Msa0311570 AT4G20020.1 60.550 109 41 2 76 182 78 186 2.83e-38 137
Msa0311570 AT5G44780.1 59.633 109 43 1 82 189 79 187 4.22e-37 137
Msa0311570 AT3G15000.1 48.739 119 55 2 75 193 87 199 1.31e-34 127
Msa0311570 AT1G72530.1 42.453 106 60 1 79 184 48 152 4.06e-29 108
Msa0311570 AT1G72530.2 39.370 127 68 3 66 184 31 156 7.14e-27 102
Msa0311570 AT3G20930.2 30.769 117 79 1 61 175 147 263 7.46e-14 70.5
Msa0311570 AT3G20930.2 32.955 88 59 0 86 173 71 158 5.01e-12 65.1
Msa0311570 AT3G20930.1 30.769 117 79 1 61 175 147 263 7.62e-14 70.1
Msa0311570 AT3G20930.1 32.955 88 59 0 86 173 71 158 5.43e-12 64.7
Msa0311570 AT1G53260.2 49.254 67 29 1 127 193 3 64 3.46e-13 67.0
Msa0311570 AT1G53260.1 51.724 58 28 0 127 184 3 60 5.56e-13 67.0
Msa0311570 AT5G44780.2 59.184 49 18 1 141 189 2 48 7.94e-11 61.6

Find 95 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGATTTGATAATATTTA+TGG 0.128227 2_4:+6433904 Msa0311570:three_prime_UTR
ATAGGTTAGGGTTAGGGTTT+TGG 0.172019 2_4:-6431209 None:intergenic
TTGAATTCGGATAGGGTTTC+GGG 0.228428 2_4:-6431290 None:intergenic
ATAATATTTATGGCCCTATA+TGG 0.242864 2_4:+6433914 Msa0311570:three_prime_UTR
TAGGTTTGCCTGGTGTTCTC+TGG 0.252246 2_4:+6432852 Msa0311570:intron
TCGGATAGGGTTTCGGGAAT+TGG 0.264768 2_4:-6431284 None:intergenic
CTCTTTGATCCACTGCGTTT+TGG 0.276909 2_4:-6433067 None:intergenic
AGGGATGGCCCTCCTGCTGC+TGG 0.277213 2_4:+6433115 Msa0311570:CDS
CTTGAATTCGGATAGGGTTT+CGG 0.277711 2_4:-6431291 None:intergenic
GAAGTTGAAACTTGGGGTTT+TGG 0.278259 2_4:-6431236 None:intergenic
ATCTTAGGAATATGTGCTTT+TGG 0.283908 2_4:+6433685 Msa0311570:three_prime_UTR
TTGATAATGTCGCGTGATTA+AGG 0.292956 2_4:-6433558 None:intergenic
AGGGTTTCGGGAATTGGGTT+TGG 0.293537 2_4:-6431278 None:intergenic
TATGGGTTTGAGCAGCTTCT+AGG 0.303429 2_4:-6433593 None:intergenic
TGGGATGATAGGTTAGGGTT+AGG 0.303465 2_4:-6431216 None:intergenic
TTCATATTCTAACACATCTA+TGG 0.308742 2_4:-6433950 None:intergenic
TGTTAGGGTTGTTTGTAATT+TGG 0.316234 2_4:+6433740 Msa0311570:three_prime_UTR
GCTGTCTCTTGTCTTGGCTT+TGG 0.323442 2_4:-6433142 None:intergenic
GGAGGAACGATCCTTTGTTT+TGG 0.326208 2_4:-6433537 None:intergenic
GGGATGATAGGTTAGGGTTA+GGG 0.334623 2_4:-6431215 None:intergenic
TGAGATGTAAGACTGGTGTT+AGG 0.342528 2_4:+6433724 Msa0311570:three_prime_UTR
TTGTCTTCCATCTCTCAAAA+TGG 0.346471 2_4:+6431159 Msa0311570:CDS
CAAACTCTTGCCACTGTCTT+GGG 0.352865 2_4:+6431472 Msa0311570:CDS
CGGATAGGGTTTCGGGAATT+GGG 0.358641 2_4:-6431283 None:intergenic
CAATCATTGGCTTATTGTAA+TGG 0.359191 2_4:+6431396 Msa0311570:CDS
CATCTAGTGAGAATTCAATA+TGG 0.361008 2_4:-6433611 None:intergenic
CTGGTTGTGATTACAATCAT+TGG 0.368609 2_4:+6431383 Msa0311570:CDS
GTTACTCATGATACCCATAT+AGG 0.381685 2_4:-6433928 None:intergenic
GAGGCAGCTGTCTCTTGTCT+TGG 0.382851 2_4:-6433148 None:intergenic
TCAAACTCTTGCCACTGTCT+TGG 0.389785 2_4:+6431471 Msa0311570:CDS
GGCATGTCACAAATTATCTT+AGG 0.393627 2_4:+6433670 Msa0311570:three_prime_UTR
GTATGTATTAGCTTTCTTAA+CGG 0.396600 2_4:+6433886 Msa0311570:three_prime_UTR
GCGAGAGGGTGCAGGATCCT+TGG 0.397568 2_4:-6431425 None:intergenic
GGCTTTGGACGCCCAGCAGC+AGG 0.406073 2_4:-6433127 None:intergenic
GTCCTGCTTATAGGTTTGCC+TGG 0.407569 2_4:+6432842 Msa0311570:intron
AGAGGATTGAAGTTGAAACT+TGG 0.412741 2_4:-6431244 None:intergenic
CATCCAATACTGCTTGAATT+CGG 0.416464 2_4:-6431303 None:intergenic
TAGGTGACAAGTACATCAAC+GGG 0.417308 2_4:+6433011 Msa0311570:intron
GAACACATAAAGTGACTGAT+AGG 0.418366 2_4:+6433779 Msa0311570:three_prime_UTR
AGGTTTGCCTGGTGTTCTCT+GGG 0.419184 2_4:+6432853 Msa0311570:intron
GATCAAAGAGTGACGGTAGA+AGG 0.423075 2_4:+6433080 Msa0311570:CDS
TTGACATCTATGTATGAGTC+TGG 0.424793 2_4:-6432881 None:intergenic
GAGGATTGAAGTTGAAACTT+GGG 0.426358 2_4:-6431243 None:intergenic
TTACTCATGATACCCATATA+GGG 0.435497 2_4:-6433927 None:intergenic
CGAGAGGGTGCAGGATCCTT+GGG 0.445990 2_4:-6431424 None:intergenic
TAATATTTATGGCCCTATAT+GGG 0.449685 2_4:+6433915 Msa0311570:three_prime_UTR
AAGTTTACAGCATACTCAAA+AGG 0.460909 2_4:+6433648 Msa0311570:three_prime_UTR
CAAGTTTGTAACAATGCCAT+TGG 0.468053 2_4:-6431139 None:intergenic
ATCTAGTGAGAATTCAATAT+GGG 0.478721 2_4:-6433610 None:intergenic
CAATGTGCATATTTAGCTCT+AGG 0.491786 2_4:+6433822 Msa0311570:three_prime_UTR
TATCCGAATTCAAGCAGTAT+TGG 0.493381 2_4:+6431300 Msa0311570:CDS
AGTGTAAGTTGTGGTGCTAA+AGG 0.493962 2_4:-6432692 None:intergenic
ATCAATCATTTGCTCGCGAG+AGG 0.499639 2_4:-6431440 None:intergenic
GGGATGGCCCTCCTGCTGCT+GGG 0.501985 2_4:+6433116 Msa0311570:CDS
AGCAACCTCTGAGAAATTCA+AGG 0.504768 2_4:+6432738 Msa0311570:CDS
ATTTGCTCGCGAGAGGGTGC+AGG 0.511963 2_4:-6431433 None:intergenic
TTTGGACGCCCAGCAGCAGG+AGG 0.512472 2_4:-6433124 None:intergenic
ATACTGCTTGAATTCGGATA+GGG 0.516734 2_4:-6431297 None:intergenic
ACATACTTGTATGCTTATCA+TGG 0.518163 2_4:-6433869 None:intergenic
TTTAGCACCACAACTTACAC+TGG 0.519722 2_4:+6432694 Msa0311570:CDS
GGTTTGGATTTGATAGAGAG+AGG 0.523232 2_4:-6431262 None:intergenic
AATACTGCTTGAATTCGGAT+AGG 0.526486 2_4:-6431298 None:intergenic
AGTTTACAGCATACTCAAAA+GGG 0.531650 2_4:+6433649 Msa0311570:three_prime_UTR
GAGATGTAAGACTGGTGTTA+GGG 0.538851 2_4:+6433725 Msa0311570:three_prime_UTR
ACTTGTATGCTTATCATGGC+TGG 0.540012 2_4:-6433865 None:intergenic
CTCTTGCCACTGTCTTGGGA+AGG 0.548600 2_4:+6431476 Msa0311570:CDS
ATATTTAGCTCTAGGTGTCA+TGG 0.550047 2_4:+6433830 Msa0311570:three_prime_UTR
TATTGTAATGGAGTTTCCCA+AGG 0.561619 2_4:+6431408 Msa0311570:CDS
TTAGAGTAATTCCAAAACAA+AGG 0.563390 2_4:+6433526 Msa0311570:three_prime_UTR
GAGAGTCTTATCATTTCCAA+TGG 0.571929 2_4:+6431123 Msa0311570:exon
AGGATTGAAGTTGAAACTTG+GGG 0.575115 2_4:-6431242 None:intergenic
TTATTTATGAGATGTAAGAC+TGG 0.585810 2_4:+6433717 Msa0311570:three_prime_UTR
GGAAGTACCCAGAGAACACC+AGG 0.587562 2_4:-6432860 None:intergenic
TTAGGTGACAAGTACATCAA+CGG 0.594359 2_4:+6433010 Msa0311570:intron
AGGTATGAGAGACGGAGGGA+TGG 0.596674 2_4:+6433100 Msa0311570:CDS
GCAACCTCTGAGAAATTCAA+GGG 0.607102 2_4:+6432739 Msa0311570:CDS
CGCAGTGGATCAAAGAGTGA+CGG 0.608782 2_4:+6433073 Msa0311570:CDS
CAAAACTGAAAATCACCTGA+AGG 0.609010 2_4:-6433502 None:intergenic
TCAATCATTTGCTCGCGAGA+GGG 0.612753 2_4:-6431439 None:intergenic
CAATGATTGTAATCACAACC+AGG 0.618731 2_4:-6431382 None:intergenic
GAATGGATTACCTCATGTAG+AGG 0.619432 2_4:-6433179 None:intergenic
ACGGTAGAAGGTATGAGAGA+CGG 0.623361 2_4:+6433092 Msa0311570:CDS
TTGGACGCCCAGCAGCAGGA+GGG 0.625944 2_4:-6433123 None:intergenic
AGAGAGACAATTATGCTACC+TGG 0.627529 2_4:+6431364 Msa0311570:CDS
TCATGTAGAGGATGAATCTG+AGG 0.630035 2_4:-6433167 None:intergenic
TCAGATTCATCCTCTACATG+AGG 0.646621 2_4:+6433169 Msa0311570:CDS
TGATAAGTAGGGTACTTGCA+AGG 0.653678 2_4:-6433043 None:intergenic
GTAGAAGGTATGAGAGACGG+AGG 0.663095 2_4:+6433095 Msa0311570:CDS
ATTACCCTTGAATTTCTCAG+AGG 0.665837 2_4:-6432743 None:intergenic
TAGAAGGTATGAGAGACGGA+GGG 0.692634 2_4:+6433096 Msa0311570:CDS
ACTTATCAACCAAAACGCAG+TGG 0.704807 2_4:+6433058 Msa0311570:CDS
ATAGAACCTTCCCAAGACAG+TGG 0.708042 2_4:-6431482 None:intergenic
CTGAAATCCAGTGTAAGTTG+TGG 0.717652 2_4:-6432701 None:intergenic
ATAATGTCGCGTGATTAAGG+AGG 0.723701 2_4:-6433555 None:intergenic
AGGTGACAAGTACATCAACG+GGG 0.822250 2_4:+6433012 Msa0311570:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTGTTAAATGA+GGG + chr2_4:6431578-6431597 Msa0311570:intron 10.0%
!!! TATCAATTCTTTTAAATTTT+AGG + chr2_4:6432992-6433011 Msa0311570:intron 10.0%
!!! GATTTTTTTTTTGTTAAATG+AGG + chr2_4:6431577-6431596 Msa0311570:intron 15.0%
!!! TTTTATTGATTGTGTTTTAA+AGG + chr2_4:6431665-6431684 Msa0311570:intron 15.0%
!!! AATTAAGTGTTTTAAATGAT+TGG + chr2_4:6431986-6432005 Msa0311570:intron 15.0%
!! AAATCACATACTATTATATA+TGG + chr2_4:6432231-6432250 Msa0311570:intron 15.0%
!! TATTATATATGGTTCTTATT+AGG + chr2_4:6432242-6432261 Msa0311570:intron 15.0%
!! ATTATATATGGTTCTTATTA+GGG + chr2_4:6432243-6432262 Msa0311570:intron 15.0%
!!! ATTTTAAATAAAAAGTTGGT+TGG + chr2_4:6432478-6432497 Msa0311570:intron 15.0%
!! AAACAAAATTAGAAGCAAAA+GGG - chr2_4:6431513-6431532 None:intergenic 20.0%
!! AAAACAAAATTAGAAGCAAA+AGG - chr2_4:6431514-6431533 None:intergenic 20.0%
!! ATATTGAACTATCTTTCATT+TGG - chr2_4:6432150-6432169 None:intergenic 20.0%
!! GTTAGAAGTAAAAATATCTA+CGG + chr2_4:6432362-6432381 Msa0311570:intron 20.0%
!!! TAATAATGGATTCTATTTTG+TGG + chr2_4:6432518-6432537 Msa0311570:intron 20.0%
!!! AATAATGGATTCTATTTTGT+GGG + chr2_4:6432519-6432538 Msa0311570:intron 20.0%
!!! GAATCATTGATAGTTTATAT+AGG - chr2_4:6433264-6433283 None:intergenic 20.0%
!!! AACGGATTTGATAATATTTA+TGG + chr2_4:6433904-6433923 Msa0311570:three_prime_UTR 20.0%
! AACAAAATTAGAAGCAAAAG+GGG - chr2_4:6431512-6431531 None:intergenic 25.0%
!! CTTTGTTTCAATTTGGAAAT+TGG + chr2_4:6431694-6431713 Msa0311570:intron 25.0%
! TTTCAATTTGGAAATTGGAA+TGG + chr2_4:6431699-6431718 Msa0311570:intron 25.0%
! AGAATATATAGCAATAGTGT+CGG + chr2_4:6431760-6431779 Msa0311570:intron 25.0%
!!! ATTTTGTTTAGACTTTAGCA+TGG + chr2_4:6431795-6431814 Msa0311570:intron 25.0%
! ATGAAATGGAAGAATATTCT+AGG + chr2_4:6431844-6431863 Msa0311570:intron 25.0%
! AAATGTATCAAATGTTTCAG+AGG + chr2_4:6431882-6431901 Msa0311570:intron 25.0%
! ATGGTATACAATGGTAATAA+TGG + chr2_4:6432504-6432523 Msa0311570:intron 25.0%
!!! ATAATGGATTCTATTTTGTG+GGG + chr2_4:6432520-6432539 Msa0311570:intron 25.0%
! AATAGTAATAGATGTGTTTG+TGG + chr2_4:6432629-6432648 Msa0311570:intron 25.0%
! GATGTCAAAAATAAAGACTA+CGG + chr2_4:6432896-6432915 Msa0311570:CDS 25.0%
!!! TTAGTGATAAGATTTTCAAG+AGG - chr2_4:6432971-6432990 None:intergenic 25.0%
! TAGGTATAACTTAACATATC+AGG - chr2_4:6433245-6433264 None:intergenic 25.0%
! ACTATCAATGATTCATATCA+TGG + chr2_4:6433270-6433289 Msa0311570:intron 25.0%
!! AGTTAGGATTTTTGTCTAAT+AGG + chr2_4:6433313-6433332 Msa0311570:intron 25.0%
! TTAGAGTAATTCCAAAACAA+AGG + chr2_4:6433526-6433545 Msa0311570:three_prime_UTR 25.0%
! ATCTAGTGAGAATTCAATAT+GGG - chr2_4:6433613-6433632 None:intergenic 25.0%
! TTATTTATGAGATGTAAGAC+TGG + chr2_4:6433717-6433736 Msa0311570:three_prime_UTR 25.0%
!!! GTATGTATTAGCTTTCTTAA+CGG + chr2_4:6433886-6433905 Msa0311570:three_prime_UTR 25.0%
! ATAATATTTATGGCCCTATA+TGG + chr2_4:6433914-6433933 Msa0311570:three_prime_UTR 25.0%
! TAATATTTATGGCCCTATAT+GGG + chr2_4:6433915-6433934 Msa0311570:three_prime_UTR 25.0%
! TTCATATTCTAACACATCTA+TGG - chr2_4:6433953-6433972 None:intergenic 25.0%
!! CAATCATTGGCTTATTGTAA+TGG + chr2_4:6431396-6431415 Msa0311570:CDS 30.0%
!! GTGAAAGCTTTGTTTCAATT+TGG + chr2_4:6431687-6431706 Msa0311570:intron 30.0%
TGGTTCAAATATGACTCAAT+TGG + chr2_4:6431815-6431834 Msa0311570:intron 30.0%
GGTTCAAATATGACTCAATT+GGG + chr2_4:6431816-6431835 Msa0311570:intron 30.0%
!! GTGTTTTAAATGATTGGTCA+CGG + chr2_4:6431992-6432011 Msa0311570:intron 30.0%
!! TGTTTTAAATGATTGGTCAC+GGG + chr2_4:6431993-6432012 Msa0311570:intron 30.0%
AACAGAATCATTAGAGAAGT+AGG + chr2_4:6432041-6432060 Msa0311570:intron 30.0%
ACAGAATCATTAGAGAAGTA+GGG + chr2_4:6432042-6432061 Msa0311570:intron 30.0%
AAGTAGGGTAGTACAAATTA+CGG + chr2_4:6432057-6432076 Msa0311570:intron 30.0%
TAACTTGAAACCTTTCTAGA+AGG - chr2_4:6432212-6432231 None:intergenic 30.0%
AGTTTATAGAAGCTACTAAG+TGG + chr2_4:6432329-6432348 Msa0311570:intron 30.0%
! AAATTCTTTTCCCACAAGAT+GGG - chr2_4:6432451-6432470 None:intergenic 30.0%
!! ATAAAAAGTTGGTTGGTGAA+TGG + chr2_4:6432485-6432504 Msa0311570:intron 30.0%
!!! TAATGGATTCTATTTTGTGG+GGG + chr2_4:6432521-6432540 Msa0311570:intron 30.0%
!!! GGATTTTGTTTTGTTCAACA+TGG + chr2_4:6432564-6432583 Msa0311570:intron 30.0%
! TTTGTTCAACATGGTAATGA+TGG + chr2_4:6432573-6432592 Msa0311570:intron 30.0%
TCAAGGGTAATGTTTCAATT+CGG + chr2_4:6432755-6432774 Msa0311570:intron 30.0%
TATTGAGCGCATGAAAAATT+AGG - chr2_4:6432943-6432962 None:intergenic 30.0%
TGTCTAATAGGAAATGAGAA+TGG + chr2_4:6433325-6433344 Msa0311570:intron 30.0%
GTCTAATAGGAAATGAGAAT+GGG + chr2_4:6433326-6433345 Msa0311570:intron 30.0%
CATCTAGTGAGAATTCAATA+TGG - chr2_4:6433614-6433633 None:intergenic 30.0%
AAGTTTACAGCATACTCAAA+AGG + chr2_4:6433648-6433667 Msa0311570:three_prime_UTR 30.0%
AGTTTACAGCATACTCAAAA+GGG + chr2_4:6433649-6433668 Msa0311570:three_prime_UTR 30.0%
! ATCTTAGGAATATGTGCTTT+TGG + chr2_4:6433685-6433704 Msa0311570:three_prime_UTR 30.0%
TGTTAGGGTTGTTTGTAATT+TGG + chr2_4:6433740-6433759 Msa0311570:three_prime_UTR 30.0%
ACATACTTGTATGCTTATCA+TGG - chr2_4:6433872-6433891 None:intergenic 30.0%
TTACTCATGATACCCATATA+GGG - chr2_4:6433930-6433949 None:intergenic 30.0%
! GAGAGTCTTATCATTTCCAA+TGG + chr2_4:6431123-6431142 Msa0311570:exon 35.0%
CAAGTTTGTAACAATGCCAT+TGG - chr2_4:6431142-6431161 None:intergenic 35.0%
TTGTCTTCCATCTCTCAAAA+TGG + chr2_4:6431159-6431178 Msa0311570:CDS 35.0%
!! ATTGTAGCCATTTTGAGAGA+TGG - chr2_4:6431169-6431188 None:intergenic 35.0%
! AAGTTGAAACTTGGGGTTTT+GGG - chr2_4:6431238-6431257 None:intergenic 35.0%
AGGATTGAAGTTGAAACTTG+GGG - chr2_4:6431245-6431264 None:intergenic 35.0%
GAGGATTGAAGTTGAAACTT+GGG - chr2_4:6431246-6431265 None:intergenic 35.0%
AGAGGATTGAAGTTGAAACT+TGG - chr2_4:6431247-6431266 None:intergenic 35.0%
ATACTGCTTGAATTCGGATA+GGG - chr2_4:6431300-6431319 None:intergenic 35.0%
AATACTGCTTGAATTCGGAT+AGG - chr2_4:6431301-6431320 None:intergenic 35.0%
TATCCGAATTCAAGCAGTAT+TGG + chr2_4:6431300-6431319 Msa0311570:CDS 35.0%
CATCCAATACTGCTTGAATT+CGG - chr2_4:6431306-6431325 None:intergenic 35.0%
CAATGATTGTAATCACAACC+AGG - chr2_4:6431385-6431404 None:intergenic 35.0%
CTGGTTGTGATTACAATCAT+TGG + chr2_4:6431383-6431402 Msa0311570:CDS 35.0%
! TATTGTAATGGAGTTTCCCA+AGG + chr2_4:6431408-6431427 Msa0311570:CDS 35.0%
!! AGGGTTTTGTAGTTGTTTGT+AGG + chr2_4:6431597-6431616 Msa0311570:intron 35.0%
TCAATTGGGCTACTATGAAA+TGG + chr2_4:6431830-6431849 Msa0311570:intron 35.0%
TCCTAATCATGTCTTGTCTT+CGG - chr2_4:6432022-6432041 None:intergenic 35.0%
! AATTACGGTAGTCTCGTTTT+AGG + chr2_4:6432072-6432091 Msa0311570:intron 35.0%
ATCCTCAAGGATACTTCTAT+AGG - chr2_4:6432121-6432140 None:intergenic 35.0%
!! TATAGAAGTATCCTTGAGGA+TGG + chr2_4:6432120-6432139 Msa0311570:intron 35.0%
GTTGTGACCAAGGAAAATTA+TGG + chr2_4:6432180-6432199 Msa0311570:intron 35.0%
TGAGTTTGAGAACTTAGACA+TGG + chr2_4:6432402-6432421 Msa0311570:intron 35.0%
! CAAATTCTTTTCCCACAAGA+TGG - chr2_4:6432452-6432471 None:intergenic 35.0%
CATCTTGTGGGAAAAGAATT+TGG + chr2_4:6432450-6432469 Msa0311570:intron 35.0%
GACTTGTATGTGGAAAACAA+TGG + chr2_4:6432543-6432562 Msa0311570:intron 35.0%
TATTGTATTCAGCATTGCAC+AGG - chr2_4:6432613-6432632 None:intergenic 35.0%
ATTACCCTTGAATTTCTCAG+AGG - chr2_4:6432746-6432765 None:intergenic 35.0%
GACAATCTTGTGAAGTTTCT+TGG + chr2_4:6432786-6432805 Msa0311570:intron 35.0%
TTTATGCTTGTCCTGCTTAT+AGG + chr2_4:6432833-6432852 Msa0311570:intron 35.0%
TTGACATCTATGTATGAGTC+TGG - chr2_4:6432884-6432903 None:intergenic 35.0%
GTCAAAAATAAAGACTACGG+AGG + chr2_4:6432899-6432918 Msa0311570:CDS 35.0%
TTAGGTGACAAGTACATCAA+CGG + chr2_4:6433010-6433029 Msa0311570:intron 35.0%
!!! TGCGTTTTGGTTGATAAGTA+GGG - chr2_4:6433057-6433076 None:intergenic 35.0%
CAAATGAACTTCCATCTCAA+AGG - chr2_4:6433355-6433374 None:intergenic 35.0%
ATGTGATTAACAACATGCAC+GGG - chr2_4:6433439-6433458 None:intergenic 35.0%
GATGTGATTAACAACATGCA+CGG - chr2_4:6433440-6433459 None:intergenic 35.0%
CAAAACTGAAAATCACCTGA+AGG - chr2_4:6433505-6433524 None:intergenic 35.0%
!! TTGATAATGTCGCGTGATTA+AGG - chr2_4:6433561-6433580 None:intergenic 35.0%
GGCATGTCACAAATTATCTT+AGG + chr2_4:6433670-6433689 Msa0311570:three_prime_UTR 35.0%
GAACACATAAAGTGACTGAT+AGG + chr2_4:6433779-6433798 Msa0311570:three_prime_UTR 35.0%
!! CAATGTGCATATTTAGCTCT+AGG + chr2_4:6433822-6433841 Msa0311570:three_prime_UTR 35.0%
!! ATATTTAGCTCTAGGTGTCA+TGG + chr2_4:6433830-6433849 Msa0311570:three_prime_UTR 35.0%
GTTACTCATGATACCCATAT+AGG - chr2_4:6433931-6433950 None:intergenic 35.0%
! TAGGTTAGGGTTAGGGTTTT+GGG - chr2_4:6431211-6431230 None:intergenic 40.0%
! ATAGGTTAGGGTTAGGGTTT+TGG - chr2_4:6431212-6431231 None:intergenic 40.0%
!!! GGTTTTGGGATGATAGGTTA+GGG - chr2_4:6431224-6431243 None:intergenic 40.0%
! GAAGTTGAAACTTGGGGTTT+TGG - chr2_4:6431239-6431258 None:intergenic 40.0%
GGTTTGGATTTGATAGAGAG+AGG - chr2_4:6431265-6431284 None:intergenic 40.0%
TTGAATTCGGATAGGGTTTC+GGG - chr2_4:6431293-6431312 None:intergenic 40.0%
CTTGAATTCGGATAGGGTTT+CGG - chr2_4:6431294-6431313 None:intergenic 40.0%
AGAGAGACAATTATGCTACC+TGG + chr2_4:6431364-6431383 Msa0311570:CDS 40.0%
TGTAGTTGTTTGTAGGCACA+TGG + chr2_4:6431604-6431623 Msa0311570:intron 40.0%
GTAGTTGTTTGTAGGCACAT+GGG + chr2_4:6431605-6431624 Msa0311570:intron 40.0%
! TTTGTAGGCACATGGGTTTT+GGG + chr2_4:6431612-6431631 Msa0311570:intron 40.0%
ACCGAAGACAAGACATGATT+AGG + chr2_4:6432018-6432037 Msa0311570:intron 40.0%
!! TAGTCTCGTTTTAGGTGGTT+TGG + chr2_4:6432080-6432099 Msa0311570:intron 40.0%
!! GACCTATAGAAGTATCCTTG+AGG + chr2_4:6432116-6432135 Msa0311570:intron 40.0%
TTAGAGACAAGTTGTGACCA+AGG + chr2_4:6432170-6432189 Msa0311570:intron 40.0%
! GCTTGGACCATAATTTTCCT+TGG - chr2_4:6432190-6432209 None:intergenic 40.0%
! TGAAACCTTTCTAGAAGGCT+TGG - chr2_4:6432207-6432226 None:intergenic 40.0%
CATACTACATGGATCACATG+AGG - chr2_4:6432276-6432295 None:intergenic 40.0%
TGATCCATGTAGTATGTCTC+TGG + chr2_4:6432280-6432299 Msa0311570:intron 40.0%
CATGTAGTATGTCTCTGGTA+GGG + chr2_4:6432285-6432304 Msa0311570:intron 40.0%
ATGGAACCTAACAACCTAGT+AGG + chr2_4:6432421-6432440 Msa0311570:intron 40.0%
TGGAACCTAACAACCTAGTA+GGG + chr2_4:6432422-6432441 Msa0311570:intron 40.0%
!! GGTTGGTGAATGGTATACAA+TGG + chr2_4:6432495-6432514 Msa0311570:intron 40.0%
TTTGTGGTTGTGTATCAGCA+TGG + chr2_4:6432645-6432664 Msa0311570:intron 40.0%
! AGTGTAAGTTGTGGTGCTAA+AGG - chr2_4:6432695-6432714 None:intergenic 40.0%
TTTAGCACCACAACTTACAC+TGG + chr2_4:6432694-6432713 Msa0311570:CDS 40.0%
CTGAAATCCAGTGTAAGTTG+TGG - chr2_4:6432704-6432723 None:intergenic 40.0%
! AGCAACCTCTGAGAAATTCA+AGG + chr2_4:6432738-6432757 Msa0311570:CDS 40.0%
! GCAACCTCTGAGAAATTCAA+GGG + chr2_4:6432739-6432758 Msa0311570:CDS 40.0%
TAGGTGACAAGTACATCAAC+GGG + chr2_4:6433011-6433030 Msa0311570:intron 40.0%
! TGATAAGTAGGGTACTTGCA+AGG - chr2_4:6433046-6433065 None:intergenic 40.0%
!!! CTGCGTTTTGGTTGATAAGT+AGG - chr2_4:6433058-6433077 None:intergenic 40.0%
ACTTATCAACCAAAACGCAG+TGG + chr2_4:6433058-6433077 Msa0311570:CDS 40.0%
TCATGTAGAGGATGAATCTG+AGG - chr2_4:6433170-6433189 None:intergenic 40.0%
TCAGATTCATCCTCTACATG+AGG + chr2_4:6433169-6433188 Msa0311570:CDS 40.0%
!! GAATGGATTACCTCATGTAG+AGG - chr2_4:6433182-6433201 None:intergenic 40.0%
AAATCCTAACTCTCCCTTGA+CGG - chr2_4:6433304-6433323 None:intergenic 40.0%
! AGAATGGGATTCCTTTGAGA+TGG + chr2_4:6433341-6433360 Msa0311570:intron 40.0%
TGAGATGGAAGTTCATTTGC+TGG + chr2_4:6433356-6433375 Msa0311570:intron 40.0%
GAGATGGAAGTTCATTTGCT+GGG + chr2_4:6433357-6433376 Msa0311570:intron 40.0%
ACATGCACGGGAAAAACTAA+TGG - chr2_4:6433427-6433446 None:intergenic 40.0%
!! TTACTTTTGTTGCAGCCTTC+AGG + chr2_4:6433487-6433506 Msa0311570:intron 40.0%
ATAATGTCGCGTGATTAAGG+AGG - chr2_4:6433558-6433577 None:intergenic 40.0%
TGAGATGTAAGACTGGTGTT+AGG + chr2_4:6433724-6433743 Msa0311570:three_prime_UTR 40.0%
! GAGATGTAAGACTGGTGTTA+GGG + chr2_4:6433725-6433744 Msa0311570:three_prime_UTR 40.0%
ACTTGTATGCTTATCATGGC+TGG - chr2_4:6433868-6433887 None:intergenic 40.0%
! AGGTTAGGGTTAGGGTTTTG+GGG - chr2_4:6431210-6431229 None:intergenic 45.0%
GGGATGATAGGTTAGGGTTA+GGG - chr2_4:6431218-6431237 None:intergenic 45.0%
TGGGATGATAGGTTAGGGTT+AGG - chr2_4:6431219-6431238 None:intergenic 45.0%
!!! GGGTTTTGGGATGATAGGTT+AGG - chr2_4:6431225-6431244 None:intergenic 45.0%
!!! ACTTGGGGTTTTGGGATGAT+AGG - chr2_4:6431230-6431249 None:intergenic 45.0%
TCAATCATTTGCTCGCGAGA+GGG - chr2_4:6431442-6431461 None:intergenic 45.0%
ATCAATCATTTGCTCGCGAG+AGG - chr2_4:6431443-6431462 None:intergenic 45.0%
TCAAACTCTTGCCACTGTCT+TGG + chr2_4:6431471-6431490 Msa0311570:CDS 45.0%
CAAACTCTTGCCACTGTCTT+GGG + chr2_4:6431472-6431491 Msa0311570:CDS 45.0%
ATAGAACCTTCCCAAGACAG+TGG - chr2_4:6431485-6431504 None:intergenic 45.0%
! GTTTGTAGGCACATGGGTTT+TGG + chr2_4:6431611-6431630 Msa0311570:intron 45.0%
! TTGTAGGCACATGGGTTTTG+GGG + chr2_4:6431613-6431632 Msa0311570:intron 45.0%
!!! GGTTTTGGGGTTAGGGAATT+GGG + chr2_4:6431626-6431645 Msa0311570:intron 45.0%
!!! GTTTTGGGGTTAGGGAATTG+GGG + chr2_4:6431627-6431646 Msa0311570:intron 45.0%
!! TACGGTAGTCTCGTTTTAGG+TGG + chr2_4:6432075-6432094 Msa0311570:intron 45.0%
CATTTGGTCTACCATCCTCA+AGG - chr2_4:6432134-6432153 None:intergenic 45.0%
! ATGGTCCAAGCCTTCTAGAA+AGG + chr2_4:6432199-6432218 Msa0311570:intron 45.0%
CCTACCAGAGACATACTACA+TGG - chr2_4:6432287-6432306 None:intergenic 45.0%
CCATGTAGTATGTCTCTGGT+AGG + chr2_4:6432284-6432303 Msa0311570:intron 45.0%
TAGTATGTCTCTGGTAGGGT+GGG + chr2_4:6432289-6432308 Msa0311570:intron 45.0%
TCTCAAACTCACGTCTAGAG+TGG - chr2_4:6432393-6432412 None:intergenic 45.0%
! TTTTGTGGGGGACTTGTATG+TGG + chr2_4:6432533-6432552 Msa0311570:intron 45.0%
AGGTGACAAGTACATCAACG+GGG + chr2_4:6433012-6433031 Msa0311570:intron 45.0%
! CTCTTTGATCCACTGCGTTT+TGG - chr2_4:6433070-6433089 None:intergenic 45.0%
GATCAAAGAGTGACGGTAGA+AGG + chr2_4:6433080-6433099 Msa0311570:CDS 45.0%
! ACGGTAGAAGGTATGAGAGA+CGG + chr2_4:6433092-6433111 Msa0311570:CDS 45.0%
! TAGAAGGTATGAGAGACGGA+GGG + chr2_4:6433096-6433115 Msa0311570:CDS 45.0%
TGCTGGAACAGAGAATGGAA+TGG - chr2_4:6433199-6433218 None:intergenic 45.0%
TTCCATTCTCTGTTCCAGCA+TGG + chr2_4:6433199-6433218 Msa0311570:intron 45.0%
ATCCATGCTGGAACAGAGAA+TGG - chr2_4:6433204-6433223 None:intergenic 45.0%
TGTTCCAGCATGGATGTTAC+TGG + chr2_4:6433209-6433228 Msa0311570:intron 45.0%
AAGACCAGTAACATCCATGC+TGG - chr2_4:6433216-6433235 None:intergenic 45.0%
AATCCTAACTCTCCCTTGAC+GGG - chr2_4:6433303-6433322 None:intergenic 45.0%
TGGAGCTTCACAGAACAGTT+GGG - chr2_4:6433407-6433426 None:intergenic 45.0%
ATGGAGCTTCACAGAACAGT+TGG - chr2_4:6433408-6433427 None:intergenic 45.0%
!! GGAGGAACGATCCTTTGTTT+TGG - chr2_4:6433540-6433559 None:intergenic 45.0%
TATGGGTTTGAGCAGCTTCT+AGG - chr2_4:6433596-6433615 None:intergenic 45.0%
!!! TATTATTTTAAATAAAAAGT+TGG + chr2_4:6432474-6432493 Msa0311570:intron 5.0%
!! GGTTAGGGTTAGGGTTTTGG+GGG - chr2_4:6431209-6431228 None:intergenic 50.0%
AGGGTTTCGGGAATTGGGTT+TGG - chr2_4:6431281-6431300 None:intergenic 50.0%
CGGATAGGGTTTCGGGAATT+GGG - chr2_4:6431286-6431305 None:intergenic 50.0%
TCGGATAGGGTTTCGGGAAT+TGG - chr2_4:6431287-6431306 None:intergenic 50.0%
!!! GCACATGGGTTTTGGGGTTA+GGG + chr2_4:6431619-6431638 Msa0311570:intron 50.0%
!!! GGGTTTTGGGGTTAGGGAAT+TGG + chr2_4:6431625-6431644 Msa0311570:intron 50.0%
GTAGTATGTCTCTGGTAGGG+TGG + chr2_4:6432288-6432307 Msa0311570:intron 50.0%
GTCCTGCTTATAGGTTTGCC+TGG + chr2_4:6432842-6432861 Msa0311570:intron 50.0%
CACCAGGCAAACCTATAAGC+AGG - chr2_4:6432847-6432866 None:intergenic 50.0%
TAGGTTTGCCTGGTGTTCTC+TGG + chr2_4:6432852-6432871 Msa0311570:intron 50.0%
AGGTTTGCCTGGTGTTCTCT+GGG + chr2_4:6432853-6432872 Msa0311570:intron 50.0%
CGCAGTGGATCAAAGAGTGA+CGG + chr2_4:6433073-6433092 Msa0311570:CDS 50.0%
! GTAGAAGGTATGAGAGACGG+AGG + chr2_4:6433095-6433114 Msa0311570:CDS 50.0%
GCTGTCTCTTGTCTTGGCTT+TGG - chr2_4:6433145-6433164 None:intergenic 50.0%
TCATGGCTTACTTCCCGTCA+AGG + chr2_4:6433287-6433306 Msa0311570:intron 50.0%
CATGGCTTACTTCCCGTCAA+GGG + chr2_4:6433288-6433307 Msa0311570:intron 50.0%
GGAGCTTCACAGAACAGTTG+GGG - chr2_4:6433406-6433425 None:intergenic 50.0%
TTTGGGGGAGAGGGTGAAAG+AGG - chr2_4:6431194-6431213 None:intergenic 55.0%
!!! GGTTAGGGTTTTGGGGGAGA+GGG - chr2_4:6431203-6431222 None:intergenic 55.0%
CTCTTGCCACTGTCTTGGGA+AGG + chr2_4:6431476-6431495 Msa0311570:CDS 55.0%
!!! GGCACATGGGTTTTGGGGTT+AGG + chr2_4:6431618-6431637 Msa0311570:intron 55.0%
GGACGCCCTACTAGGTTGTT+AGG - chr2_4:6432430-6432449 None:intergenic 55.0%
ACAAGATGGGACGCCCTACT+AGG - chr2_4:6432438-6432457 None:intergenic 55.0%
! TAGTAGGGCGTCCCATCTTG+TGG + chr2_4:6432437-6432456 Msa0311570:intron 55.0%
! AGTAGGGCGTCCCATCTTGT+GGG + chr2_4:6432438-6432457 Msa0311570:intron 55.0%
!! GGAAGTACCCAGAGAACACC+AGG - chr2_4:6432863-6432882 None:intergenic 55.0%
AGGTATGAGAGACGGAGGGA+TGG + chr2_4:6433100-6433119 Msa0311570:CDS 55.0%
GAGGCAGCTGTCTCTTGTCT+TGG - chr2_4:6433151-6433170 None:intergenic 55.0%
CTTCCCGTCAAGGGAGAGTT+AGG + chr2_4:6433297-6433316 Msa0311570:intron 55.0%
!!! GGGTTAGGGTTTTGGGGGAG+AGG - chr2_4:6431204-6431223 None:intergenic 60.0%
! CGAGAGGGTGCAGGATCCTT+GGG - chr2_4:6431427-6431446 None:intergenic 60.0%
! ATTTGCTCGCGAGAGGGTGC+AGG - chr2_4:6431436-6431455 None:intergenic 60.0%
GTCTCTGGTAGGGTGGGCAT+TGG + chr2_4:6432295-6432314 Msa0311570:intron 60.0%
! GCGAGAGGGTGCAGGATCCT+TGG - chr2_4:6431428-6431447 None:intergenic 65.0%
TTGGACGCCCAGCAGCAGGA+GGG - chr2_4:6433126-6433145 None:intergenic 65.0%
TTTGGACGCCCAGCAGCAGG+AGG - chr2_4:6433127-6433146 None:intergenic 65.0%
AGGGATGGCCCTCCTGCTGC+TGG + chr2_4:6433115-6433134 Msa0311570:CDS 70.0%
GGGATGGCCCTCCTGCTGCT+GGG + chr2_4:6433116-6433135 Msa0311570:CDS 70.0%
!! GGCTTTGGACGCCCAGCAGC+AGG - chr2_4:6433130-6433149 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 6431119 6434029 6431119 ID=Msa0311570;Name=Msa0311570
chr2_4 mRNA 6431119 6434029 6431119 ID=Msa0311570-mRNA-1;Parent=Msa0311570;Name=Msa0311570-mRNA-1;_AED=0.05;_eAED=0.05;_QI=23|1|1|1|0.75|0.8|5|529|231
chr2_4 exon 6431119 6431497 6431119 ID=Msa0311570-mRNA-1:exon:2445;Parent=Msa0311570-mRNA-1
chr2_4 exon 6432663 6432760 6432663 ID=Msa0311570-mRNA-1:exon:2446;Parent=Msa0311570-mRNA-1
chr2_4 exon 6432855 6432920 6432855 ID=Msa0311570-mRNA-1:exon:2447;Parent=Msa0311570-mRNA-1
chr2_4 exon 6433014 6433190 6433014 ID=Msa0311570-mRNA-1:exon:2448;Parent=Msa0311570-mRNA-1
chr2_4 exon 6433502 6434029 6433502 ID=Msa0311570-mRNA-1:exon:2449;Parent=Msa0311570-mRNA-1
chr2_4 five_prime_UTR 6431119 6431141 6431119 ID=Msa0311570-mRNA-1:five_prime_utr;Parent=Msa0311570-mRNA-1
chr2_4 CDS 6431142 6431497 6431142 ID=Msa0311570-mRNA-1:cds;Parent=Msa0311570-mRNA-1
chr2_4 CDS 6432663 6432760 6432663 ID=Msa0311570-mRNA-1:cds;Parent=Msa0311570-mRNA-1
chr2_4 CDS 6432855 6432920 6432855 ID=Msa0311570-mRNA-1:cds;Parent=Msa0311570-mRNA-1
chr2_4 CDS 6433014 6433189 6433014 ID=Msa0311570-mRNA-1:cds;Parent=Msa0311570-mRNA-1
chr2_4 three_prime_UTR 6433190 6433190 6433190 ID=Msa0311570-mRNA-1:three_prime_utr;Parent=Msa0311570-mRNA-1
chr2_4 three_prime_UTR 6433502 6434029 6433502 ID=Msa0311570-mRNA-1:three_prime_utr;Parent=Msa0311570-mRNA-1
Gene Sequence

>Msa0311570

ATGGCATTGTTACAAACTTGTCTTCCATCTCTCAAAATGGCTACAATTTCCTCTTTCACCCTCTCCCCCAAAACCCTAACCCTAACCTATCATCCCAAAACCCCAAGTTTCAACTTCAATCCTCTCTCTATCAAATCCAAACCCAATTCCCGAAACCCTATCCGAATTCAAGCAGTATTGGATGAAGATTACTCTTCAAAAAGAAGCAGTAGCAATGAACAGAGAGAGACAATTATGCTACCTGGTTGTGATTACAATCATTGGCTTATTGTAATGGAGTTTCCCAAGGATCCTGCACCCTCTCGCGAGCAAATGATTGATACTTATCTTCAAACTCTTGCCACTGTCTTGGGAAGCATGGAAGAAGCTAAGAAGAACATGTATGCCTTTAGCACCACAACTTACACTGGATTTCAGTGCACTGTTGATGAAGCAACCTCTGAGAAATTCAAGGGTTTGCCTGGTGTTCTCTGGGTACTTCCAGACTCATACATAGATGTCAAAAATAAAGACTACGGAGGTGACAAGTACATCAACGGGGAGATAATTCCTTGCAAGTACCCTACTTATCAACCAAAACGCAGTGGATCAAAGAGTGACGGTAGAAGGTATGAGAGACGGAGGGATGGCCCTCCTGCTGCTGGGCGTCCAAAGCCAAGACAAGAGACAGCTGCCTCAGATTCATCCTCTACATGA

Protein sequence

>Msa0311570

MALLQTCLPSLKMATISSFTLSPKTLTLTYHPKTPSFNFNPLSIKSKPNSRNPIRIQAVLDEDYSSKRSSSNEQRETIMLPGCDYNHWLIVMEFPKDPAPSREQMIDTYLQTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYINGEIIPCKYPTYQPKRSGSKSDGRRYERRRDGPPAAGRPKPRQETAASDSSST*