AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1221540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221540 MtrunA17_Chr4g0073171 93.962 265 16 0 1 265 1 265 0.0 518
Msa1221540 MtrunA17_Chr2g0300621 29.255 188 108 5 58 236 106 277 4.42e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1221540 AT4G28030.1 64.831 236 83 0 27 262 31 266 6.04e-115 331
Msa1221540 AT4G28030.2 61.017 236 81 1 27 262 31 255 2.11e-103 301
Msa1221540 AT2G06025.1 30.481 187 107 4 58 236 95 266 2.84e-16 77.0
Msa1221540 AT2G06025.6 30.481 187 107 4 58 236 95 266 2.84e-16 77.0
Msa1221540 AT2G06025.4 30.481 187 107 4 58 236 95 266 2.84e-16 77.0

Find 60 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACTTAAGGAGCGTGTTTC+AGG 0.154494 8_1:-85164847 Msa1221540:CDS
CAAAGTCAGTTGCTCGTAAT+TGG 0.193463 8_1:-85163986 Msa1221540:CDS
CTTTCTACGATGATGAATTC+TGG 0.240043 8_1:-85165118 Msa1221540:CDS
TTCATGTACAATTTCTTTGC+TGG 0.253198 8_1:+85162102 None:intergenic
GTTAATGCAGAATTTGAAAA+TGG 0.275846 8_1:+85165242 None:intergenic
AGGATTGAAATTGAATTCTA+AGG 0.285749 8_1:+85165204 None:intergenic
CTTTCAATCACCTAATTTGA+TGG 0.329354 8_1:-85161994 Msa1221540:exon
CACGACAACACCATCAAATT+AGG 0.334600 8_1:+85161984 None:intergenic
CGTAAGTGTCTGGACGAAAT+TGG 0.337880 8_1:+85165063 None:intergenic
GCTAGAGAGTTGCACAGAAA+TGG 0.349757 8_1:-85164035 Msa1221540:CDS
AAAGTCAGTTGCTCGTAATT+GGG 0.384466 8_1:-85163985 Msa1221540:CDS
AGTCTTCCTGATGAAATTGT+AGG 0.385815 8_1:-85164544 Msa1221540:CDS
TGATTTATGTTCTTCATGTA+AGG 0.404309 8_1:-85164749 Msa1221540:intron
ACGTGAGTTTGAAGCACTTA+AGG 0.420143 8_1:-85164860 Msa1221540:CDS
AATGGAGAAGATGAATGAAT+TGG 0.432279 8_1:+85165260 None:intergenic
TTTCTACGATGATGAATTCT+GGG 0.435140 8_1:-85165117 Msa1221540:CDS
CTAGAGAGTTGCACAGAAAT+GGG 0.439454 8_1:-85164034 Msa1221540:CDS
TTTACTTATGAATGAAATGA+AGG 0.445885 8_1:+85161872 None:intergenic
ACTTGGACTCCGTAAGTGTC+TGG 0.451152 8_1:+85165053 None:intergenic
TTCATCCCTACAATTTCATC+AGG 0.451868 8_1:+85164538 None:intergenic
CCCGTGTGACTGTGTTAATA+TGG 0.468972 8_1:-85161953 Msa1221540:three_prime_UTR
CAATTTCGTCCAGACACTTA+CGG 0.474222 8_1:-85165062 Msa1221540:CDS
TTTGATGGTGTTGTCGTGTC+GGG 0.481584 8_1:-85161979 Msa1221540:three_prime_UTR
TCATAATTCATTTCTTACAA+TGG 0.489089 8_1:+85161833 None:intergenic
AGAAACCTTGCCTGCCATGC+AGG 0.496588 8_1:+85162051 None:intergenic
GGAGAAGATGAATGAATTGG+AGG 0.499020 8_1:+85165263 None:intergenic
ATTCTGCTAGTGGAGAAGAC+AGG 0.503889 8_1:-85164603 Msa1221540:CDS
AATGTTTATGGAAGAAGCAT+AGG 0.510788 8_1:+85165184 None:intergenic
GGAGAAGACAGGGTTGTAGT+TGG 0.511921 8_1:-85164592 Msa1221540:CDS
CTTTGCTGGTTCATTGTCAA+CGG 0.514602 8_1:+85162116 None:intergenic
CACTTAAGGAGCGTGTTTCA+GGG 0.519287 8_1:-85164846 Msa1221540:CDS
CTAGTGGAGCTGATACTACA+AGG 0.523464 8_1:-85164082 Msa1221540:CDS
AGAAATTGTACATGAAGAGC+GGG 0.527874 8_1:-85162095 Msa1221540:CDS
GAGTGATGAACCTGCATGGC+AGG 0.529229 8_1:-85162061 Msa1221540:CDS
ATGAACCTGCATGGCAGGCA+AGG 0.531331 8_1:-85162056 Msa1221540:CDS
TTAGGATCATGCTAAGTACT+TGG 0.533106 8_1:-85164887 Msa1221540:intron
GTCTGGACGAAATTGGTTGA+AGG 0.533997 8_1:+85165070 None:intergenic
GCGAAGACTTCTGCTATGGA+TGG 0.537747 8_1:-85162019 Msa1221540:CDS
ATCCATAGCAGAAGTCTTCG+CGG 0.537820 8_1:+85162021 None:intergenic
AAATATGTGCGGCGAGTGCA+AGG 0.547138 8_1:+85161693 None:intergenic
AAGAAATTGTACATGAAGAG+CGG 0.548993 8_1:-85162096 Msa1221540:CDS
ATTTGATGGTGTTGTCGTGT+CGG 0.549344 8_1:-85161980 Msa1221540:three_prime_UTR
GACCGCGAAGACTTCTGCTA+TGG 0.554635 8_1:-85162023 Msa1221540:CDS
AGGCTAGATAAATGTGACAT+AGG 0.565192 8_1:+85164778 None:intergenic
AGAGTTGCACAGAAATGGGT+TGG 0.578468 8_1:-85164030 Msa1221540:CDS
AAGTCAGTTGCTCGTAATTG+GGG 0.584670 8_1:-85163984 Msa1221540:intron
GTCTTCCTGATGAAATTGTA+GGG 0.587974 8_1:-85164543 Msa1221540:CDS
GAAATGAAGGAAAACTAATG+AGG 0.590130 8_1:+85161885 None:intergenic
AAGAACATAAATCATCATAG+AGG 0.592116 8_1:+85164758 None:intergenic
CGAAGACTTCTGCTATGGAT+GGG 0.593997 8_1:-85162018 Msa1221540:CDS
TTCTGCTAGTGGAGAAGACA+GGG 0.600017 8_1:-85164602 Msa1221540:CDS
GTTCATTGTCAACGGCAACA+TGG 0.600217 8_1:+85162124 None:intergenic
GCCATATTAACACAGTCACA+CGG 0.624585 8_1:+85161952 None:intergenic
GAAGGAACGAACACGAAGAG+AGG 0.628307 8_1:+85165088 None:intergenic
CCATATTAACACAGTCACAC+GGG 0.629542 8_1:+85161953 None:intergenic
TTCAGCGATTGTGATCAAAG+AGG 0.684752 8_1:+85165142 None:intergenic
GGAAAACTAATGAGGCAACG+TGG 0.710061 8_1:+85161893 None:intergenic
TAGTGGAGCTGATACTACAA+GGG 0.712956 8_1:-85164081 Msa1221540:CDS
AATTGTAGGGATGAAGCCAG+AGG 0.725736 8_1:-85164530 Msa1221540:intron
ATGAGAGTGATGAACCTGCA+TGG 0.752863 8_1:-85162065 Msa1221540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGAAAGAAAAAAAA+TGG + chr8_1:85162099-85162118 None:intergenic 10.0%
!! TTATGAATATTGAAATTATT+TGG + chr8_1:85164054-85164073 None:intergenic 10.0%
!! AATATTCATAACTATTATAT+TGG - chr8_1:85164063-85164082 Msa1221540:CDS 10.0%
!!! TCTTTGTTTATGATTTTATT+TGG + chr8_1:85161748-85161767 None:intergenic 15.0%
!! TGTAATGTATATTTGTTTAT+CGG - chr8_1:85162428-85162447 Msa1221540:intron 15.0%
!!! ATTAGCTATTTTTATAACAA+AGG - chr8_1:85162705-85162724 Msa1221540:intron 15.0%
!! TAAAACATTATACAATTTGA+TGG + chr8_1:85163003-85163022 None:intergenic 15.0%
!!! AATATTCAGAACTTTTATAT+TGG - chr8_1:85163770-85163789 Msa1221540:intron 15.0%
!!! TTTTGTAAAAATAATCATCA+CGG + chr8_1:85165323-85165342 None:intergenic 15.0%
!!! TTTCCTTGATTTTAATTCAA+TGG - chr8_1:85162395-85162414 Msa1221540:intron 20.0%
!! TTTCCATTGAATTAAAATCA+AGG + chr8_1:85162401-85162420 None:intergenic 20.0%
!! TGATTAAATTGACCAAAATT+AGG + chr8_1:85163665-85163684 None:intergenic 20.0%
!! TTGGTCAATTTAATCATTAT+TGG - chr8_1:85163669-85163688 Msa1221540:intron 20.0%
!!! ACATGCAAATTTTGATTAAT+AGG + chr8_1:85163965-85163984 None:intergenic 20.0%
!!! TTAGTTCTTTTGTAAATAGT+AGG - chr8_1:85164221-85164240 Msa1221540:intron 20.0%
!!! TAGTTCTTTTGTAAATAGTA+GGG - chr8_1:85164222-85164241 Msa1221540:intron 20.0%
!! ATGCTATCTTAAAATATAAC+TGG + chr8_1:85164322-85164341 None:intergenic 20.0%
!! AAAGAAAATCTAATCAACTA+GGG + chr8_1:85164686-85164705 None:intergenic 20.0%
!! AAAAGAAAATCTAATCAACT+AGG + chr8_1:85164687-85164706 None:intergenic 20.0%
!!! AATTGTTCATATATTTGTTG+CGG - chr8_1:85164789-85164808 Msa1221540:CDS 20.0%
!! TTTACTTATGAATGAAATGA+AGG + chr8_1:85165244-85165263 None:intergenic 20.0%
!! TCATAATTCATTTCTTACAA+TGG + chr8_1:85165283-85165302 None:intergenic 20.0%
!! TTTGTAAAAATAATCATCAC+GGG + chr8_1:85165322-85165341 None:intergenic 20.0%
! CTATCAACACACAAAAAATA+AGG + chr8_1:85161720-85161739 None:intergenic 25.0%
! GTTAATGCAGAATTTGAAAA+TGG + chr8_1:85161874-85161893 None:intergenic 25.0%
! AGGATTGAAATTGAATTCTA+AGG + chr8_1:85161912-85161931 None:intergenic 25.0%
! AAGAACATAAATCATCATAG+AGG + chr8_1:85162358-85162377 None:intergenic 25.0%
! TGATTTATGTTCTTCATGTA+AGG - chr8_1:85162364-85162383 Msa1221540:intron 25.0%
! TATATTTGTTTATCGGTCTT+TGG - chr8_1:85162435-85162454 Msa1221540:intron 25.0%
!! ATTTTATAGTATTCTGCTAG+TGG - chr8_1:85162500-85162519 Msa1221540:intron 25.0%
! GAATGTATAAAAAATACCTC+TGG + chr8_1:85162602-85162621 None:intergenic 25.0%
!! GAAAATTGATAACTCTTCTA+TGG - chr8_1:85162953-85162972 Msa1221540:intron 25.0%
! AACATTATACAATTTGATGG+AGG + chr8_1:85163000-85163019 None:intergenic 25.0%
!! TTGTATAATGTTTTACTGTC+AGG - chr8_1:85163008-85163027 Msa1221540:intron 25.0%
! TGATAGAATCTAATTGGTAA+TGG + chr8_1:85163248-85163267 None:intergenic 25.0%
! ATTACCAATTAGATTCTATC+AGG - chr8_1:85163247-85163266 Msa1221540:intron 25.0%
! TTACCAATTAGATTCTATCA+GGG - chr8_1:85163248-85163267 Msa1221540:intron 25.0%
!! TAAGTACCAAATCCTTTTAA+AGG + chr8_1:85163307-85163326 None:intergenic 25.0%
! TTGAACTTGATTAGATATCA+GGG - chr8_1:85163331-85163350 Msa1221540:intron 25.0%
! AATACAAATGGTTAGGATTA+AGG + chr8_1:85163367-85163386 None:intergenic 25.0%
! AAGACTTTAATTGTTGAGTA+GGG - chr8_1:85163602-85163621 Msa1221540:intron 25.0%
!! AGACTTTCATTGTTTTCATT+AGG - chr8_1:85163890-85163909 Msa1221540:intron 25.0%
! ATCTACAGTTCATGAAAAAA+TGG - chr8_1:85164362-85164381 Msa1221540:intron 25.0%
! AACCAAATTTCATATGATCT+TGG - chr8_1:85164430-85164449 Msa1221540:intron 25.0%
! TGTTCCAAATTGATAAACAA+TGG - chr8_1:85164469-85164488 Msa1221540:intron 25.0%
!!! ATTTTGAAATCTGTTGACAA+TGG + chr8_1:85164506-85164525 None:intergenic 25.0%
!! AATTTAGTTCAATACAGTTC+CGG + chr8_1:85164633-85164652 None:intergenic 25.0%
! AAGAAAATCTAATCAACTAG+GGG + chr8_1:85164685-85164704 None:intergenic 25.0%
! TATTCATGAGTATATGAACT+AGG - chr8_1:85164855-85164874 Msa1221540:CDS 25.0%
! TTCTACATGACAATGAATAT+CGG - chr8_1:85164892-85164911 Msa1221540:intron 25.0%
! ACATTTCTTAAACCAAAAAG+TGG - chr8_1:85164915-85164934 Msa1221540:intron 25.0%
AATGGAGAAGATGAATGAAT+TGG + chr8_1:85161856-85161875 None:intergenic 30.0%
! AATGTTTATGGAAGAAGCAT+AGG + chr8_1:85161932-85161951 None:intergenic 30.0%
!!! TTTTTGGGTGCAAATGTTTA+TGG + chr8_1:85161944-85161963 None:intergenic 30.0%
TTTCTACGATGATGAATTCT+GGG - chr8_1:85161996-85162015 Msa1221540:exon 30.0%
TTTAGCTACTGAATTGCAAA+AGG - chr8_1:85162152-85162171 Msa1221540:intron 30.0%
TTAGCTACTGAATTGCAAAA+GGG - chr8_1:85162153-85162172 Msa1221540:intron 30.0%
GTTTGGATTGTGATAAAAGA+TGG - chr8_1:85162179-85162198 Msa1221540:intron 30.0%
AAGCACTTAAGAAACTGTTT+GGG + chr8_1:85162854-85162873 None:intergenic 30.0%
TAAGCACTTAAGAAACTGTT+TGG + chr8_1:85162855-85162874 None:intergenic 30.0%
ATCATCCAAAACAAGCTTAA+GGG + chr8_1:85162913-85162932 None:intergenic 30.0%
! GCATAAATAGACCATTTTCA+AGG + chr8_1:85163204-85163223 None:intergenic 30.0%
ATTCCCTGATAGAATCTAAT+TGG + chr8_1:85163254-85163273 None:intergenic 30.0%
GTTGAACTTGATTAGATATC+AGG - chr8_1:85163330-85163349 Msa1221540:intron 30.0%
! CCTAACCATTTGTATTGATA+CGG - chr8_1:85163371-85163390 Msa1221540:intron 30.0%
! CTAACCATTTGTATTGATAC+GGG - chr8_1:85163372-85163391 Msa1221540:intron 30.0%
ATTTCCCGTATCAATACAAA+TGG + chr8_1:85163379-85163398 None:intergenic 30.0%
CTTTATATATGATCCATGCT+AGG - chr8_1:85163525-85163544 Msa1221540:intron 30.0%
GAAGACTTTAATTGTTGAGT+AGG - chr8_1:85163601-85163620 Msa1221540:intron 30.0%
! TTTACCTACTCACCTAATTT+TGG - chr8_1:85163650-85163669 Msa1221540:intron 30.0%
!! TCTCTAAGACTTCATATCAT+GGG + chr8_1:85163699-85163718 None:intergenic 30.0%
!! ATCTCTAAGACTTCATATCA+TGG + chr8_1:85163700-85163719 None:intergenic 30.0%
! TCAATAAGACTCATTTTGCA+GGG + chr8_1:85163812-85163831 None:intergenic 30.0%
! ATCAATAAGACTCATTTTGC+AGG + chr8_1:85163813-85163832 None:intergenic 30.0%
! CTTATTGATGACAGTAGTAA+TGG - chr8_1:85163824-85163843 Msa1221540:intron 30.0%
TGATTAATAGGACCCAAATT+TGG + chr8_1:85163953-85163972 None:intergenic 30.0%
TAAGACTTCCTAATTATCAC+TGG + chr8_1:85163988-85164007 None:intergenic 30.0%
TAGGGTAACTATCATAATCA+TGG - chr8_1:85164240-85164259 Msa1221540:intron 30.0%
GACCAAGATCATATGAAATT+TGG + chr8_1:85164435-85164454 None:intergenic 30.0%
CGTACCATTGTTTATCAATT+TGG + chr8_1:85164476-85164495 None:intergenic 30.0%
! GATCTAGGTTTGGTTATATT+TGG - chr8_1:85164568-85164587 Msa1221540:CDS 30.0%
!! GTTTCCATAAACTTGTTATC+CGG - chr8_1:85164611-85164630 Msa1221540:intron 30.0%
! AAATTGTTTTCTCCGATGTT+TGG + chr8_1:85164741-85164760 None:intergenic 30.0%
! AACATCGGAGAAAACAATTT+TGG - chr8_1:85164741-85164760 Msa1221540:intron 30.0%
!!! ATTTTAGAGTGCCTATAACT+TGG + chr8_1:85164827-85164846 None:intergenic 30.0%
TTCATGTACAATTTCTTTGC+TGG + chr8_1:85165014-85165033 None:intergenic 30.0%
AAGAAATTGTACATGAAGAG+CGG - chr8_1:85165017-85165036 Msa1221540:intron 30.0%
CTTTCAATCACCTAATTTGA+TGG - chr8_1:85165119-85165138 Msa1221540:CDS 30.0%
GAAATGAAGGAAAACTAATG+AGG + chr8_1:85165231-85165250 None:intergenic 30.0%
!!! TGTCATTTTTGTTGTGTTCG+TGG + chr8_1:85161806-85161825 None:intergenic 35.0%
!!! CAAAGAGGTGTCGATTTTTT+GGG + chr8_1:85161959-85161978 None:intergenic 35.0%
!!! TCAAAGAGGTGTCGATTTTT+TGG + chr8_1:85161960-85161979 None:intergenic 35.0%
CTTTCTACGATGATGAATTC+TGG - chr8_1:85161995-85162014 Msa1221540:exon 35.0%
ATGGAGTGAAAAAACTCACT+TGG + chr8_1:85162080-85162099 None:intergenic 35.0%
TTAGGATCATGCTAAGTACT+TGG - chr8_1:85162226-85162245 Msa1221540:intron 35.0%
AGGCTAGATAAATGTGACAT+AGG + chr8_1:85162338-85162357 None:intergenic 35.0%
AGTCTTCCTGATGAAATTGT+AGG - chr8_1:85162569-85162588 Msa1221540:intron 35.0%
GTCTTCCTGATGAAATTGTA+GGG - chr8_1:85162570-85162589 Msa1221540:intron 35.0%
TTCATCCCTACAATTTCATC+AGG + chr8_1:85162578-85162597 None:intergenic 35.0%
ATTTGTGTTTATGTCCTGTC+CGG - chr8_1:85162646-85162665 Msa1221540:intron 35.0%
! ATAAGCCTTTGTCGTTTATC+CGG + chr8_1:85162668-85162687 None:intergenic 35.0%
GTTGTTTACATAAGCTGTCA+TGG - chr8_1:85162764-85162783 Msa1221540:intron 35.0%
GATCATCCAAAACAAGCTTA+AGG + chr8_1:85162914-85162933 None:intergenic 35.0%
AAAGTCAGTTGCTCGTAATT+GGG - chr8_1:85163128-85163147 Msa1221540:intron 35.0%
AGAAACAGTCAACTGCTAAA+TGG - chr8_1:85163154-85163173 Msa1221540:intron 35.0%
! TGTTTTCACTGCCTTGAAAA+TGG - chr8_1:85163190-85163209 Msa1221540:intron 35.0%
!! AATCTAATTGGTAATGGCAG+TGG + chr8_1:85163242-85163261 None:intergenic 35.0%
TCAGGGAATTCAATTGTACT+TGG - chr8_1:85163265-85163284 Msa1221540:intron 35.0%
! TCAATTGTACTTGGAAGTGT+TGG - chr8_1:85163274-85163293 Msa1221540:intron 35.0%
! CTTGTGCCTTTAAAAGGATT+TGG - chr8_1:85163298-85163317 Msa1221540:intron 35.0%
CCGTATCAATACAAATGGTT+AGG + chr8_1:85163374-85163393 None:intergenic 35.0%
GAAATGAACACGTGTAAAGA+AGG - chr8_1:85163394-85163413 Msa1221540:intron 35.0%
!!! GGTCCACATAAGTTTTGATT+TGG - chr8_1:85163415-85163434 Msa1221540:intron 35.0%
CCTCCAAATCAAAACTTATG+TGG + chr8_1:85163421-85163440 None:intergenic 35.0%
!!! CCACATAAGTTTTGATTTGG+AGG - chr8_1:85163418-85163437 Msa1221540:intron 35.0%
! TGATTTGGAGGATAGTTCAT+AGG - chr8_1:85163430-85163449 Msa1221540:intron 35.0%
TTGACCAAAATTAGGTGAGT+AGG + chr8_1:85163657-85163676 None:intergenic 35.0%
TTTACCTGCTCACCAAATTT+GGG - chr8_1:85163938-85163957 Msa1221540:intron 35.0%
TTGCATGTCCAGTGATAATT+AGG - chr8_1:85163977-85163996 Msa1221540:intron 35.0%
CGCAACATGAAAAACATAAC+TGG + chr8_1:85164277-85164296 None:intergenic 35.0%
ACAGGCAGTCAAATAAAAAC+AGG + chr8_1:85164392-85164411 None:intergenic 35.0%
GATCGACGTTACAAATTTAC+AGG + chr8_1:85164410-85164429 None:intergenic 35.0%
AGTTCCGGATAACAAGTTTA+TGG + chr8_1:85164618-85164637 None:intergenic 35.0%
CCTATAACTTGGAATCTACA+TGG + chr8_1:85164816-85164835 None:intergenic 35.0%
CCATGTAGATTCCAAGTTAT+AGG - chr8_1:85164813-85164832 Msa1221540:CDS 35.0%
ATTGTCATGTAGAAATCCCA+GGG + chr8_1:85164886-85164905 None:intergenic 35.0%
!! GAGTCAATGTAACCACTTTT+TGG + chr8_1:85164930-85164949 None:intergenic 35.0%
TCCATATTTGTGTGTCTTTC+AGG - chr8_1:85164948-85164967 Msa1221540:intron 35.0%
AGAAATTGTACATGAAGAGC+GGG - chr8_1:85165018-85165037 Msa1221540:intron 35.0%
GGAGAAGATGAATGAATTGG+AGG + chr8_1:85161853-85161872 None:intergenic 40.0%
TTCAGCGATTGTGATCAAAG+AGG + chr8_1:85161974-85161993 None:intergenic 40.0%
CAATTTCGTCCAGACACTTA+CGG - chr8_1:85162051-85162070 Msa1221540:CDS 40.0%
! GAATTGCAAAAGGGTGTGTT+TGG - chr8_1:85162162-85162181 Msa1221540:intron 40.0%
CGTGTTTGTCAAGTTCTGTT+AGG - chr8_1:85162208-85162227 Msa1221540:intron 40.0%
! ACGTGAGTTTGAAGCACTTA+AGG - chr8_1:85162253-85162272 Msa1221540:intron 40.0%
! AACAAGCTTAAGGGCATGTA+TGG + chr8_1:85162904-85162923 None:intergenic 40.0%
!! ACATGCCCTTAAGCTTGTTT+TGG - chr8_1:85162905-85162924 Msa1221540:intron 40.0%
! ATGTTTTACTGTCAGGCTAG+TGG - chr8_1:85163015-85163034 Msa1221540:intron 40.0%
TAGTGGAGCTGATACTACAA+GGG - chr8_1:85163032-85163051 Msa1221540:intron 40.0%
CTAGAGAGTTGCACAGAAAT+GGG - chr8_1:85163079-85163098 Msa1221540:intron 40.0%
CAAAGTCAGTTGCTCGTAAT+TGG - chr8_1:85163127-85163146 Msa1221540:intron 40.0%
AAGTCAGTTGCTCGTAATTG+GGG - chr8_1:85163129-85163148 Msa1221540:intron 40.0%
!! GTTGGTCTTGTGCCTTTAAA+AGG - chr8_1:85163292-85163311 Msa1221540:intron 40.0%
GAGGATAGTTCATAGGTTAG+AGG - chr8_1:85163437-85163456 Msa1221540:intron 40.0%
ATGATCCATGCTAGGAGTTA+AGG - chr8_1:85163533-85163552 Msa1221540:intron 40.0%
TGATCCATGCTAGGAGTTAA+GGG - chr8_1:85163534-85163553 Msa1221540:intron 40.0%
GATAGCCAACTTTGTCTAGT+CGG - chr8_1:85163577-85163596 Msa1221540:intron 40.0%
! ACTAGACGAAGTTGGTTACA+TGG + chr8_1:85163864-85163883 None:intergenic 40.0%
ATGTAACCAACTTCGTCTAG+TGG - chr8_1:85163863-85163882 Msa1221540:intron 40.0%
TGTAACCAACTTCGTCTAGT+GGG - chr8_1:85163864-85163883 Msa1221540:intron 40.0%
CTTTACCTGCTCACCAAATT+TGG - chr8_1:85163937-85163956 Msa1221540:intron 40.0%
! TCAACGAGACTCGTTTTGTA+GGG + chr8_1:85164105-85164124 None:intergenic 40.0%
! TTTCTAGCAGACAAGTCTCT+TGG + chr8_1:85164155-85164174 None:intergenic 40.0%
AGCATGTCTTGATGTTTGTG+AGG - chr8_1:85164337-85164356 Msa1221540:intron 40.0%
GATCTTGGTCTCGAACATAA+TGG - chr8_1:85164445-85164464 Msa1221540:intron 40.0%
! GACTGGAGTTTTCTATCACA+AGG + chr8_1:85164535-85164554 None:intergenic 40.0%
! GTTATATTTGGCTCGCAGTA+GGG - chr8_1:85164580-85164599 Msa1221540:CDS 40.0%
! TTATATTTGGCTCGCAGTAG+GGG - chr8_1:85164581-85164600 Msa1221540:CDS 40.0%
!! TGTGTGATGGTAATGGTGTT+TGG + chr8_1:85164662-85164681 None:intergenic 40.0%
TGCCATGAAGAACCAAACAT+CGG - chr8_1:85164726-85164745 Msa1221540:intron 40.0%
CATTGTCATGTAGAAATCCC+AGG + chr8_1:85164887-85164906 None:intergenic 40.0%
GCCTGAAAGACACACAAATA+TGG + chr8_1:85164952-85164971 None:intergenic 40.0%
!! CTTTGCTGGTTCATTGTCAA+CGG + chr8_1:85165000-85165019 None:intergenic 40.0%
CACGACAACACCATCAAATT+AGG + chr8_1:85165132-85165151 None:intergenic 40.0%
!! ATTTGATGGTGTTGTCGTGT+CGG - chr8_1:85165133-85165152 Msa1221540:CDS 40.0%
CCATATTAACACAGTCACAC+GGG + chr8_1:85165163-85165182 None:intergenic 40.0%
GCCATATTAACACAGTCACA+CGG + chr8_1:85165164-85165183 None:intergenic 40.0%
GTCTGGACGAAATTGGTTGA+AGG + chr8_1:85162046-85162065 None:intergenic 45.0%
CGTAAGTGTCTGGACGAAAT+TGG + chr8_1:85162053-85162072 None:intergenic 45.0%
! CACTTAAGGAGCGTGTTTCA+GGG - chr8_1:85162267-85162286 Msa1221540:intron 45.0%
GCGTGTTTCAGGGAAAAAGA+CGG - chr8_1:85162277-85162296 Msa1221540:intron 45.0%
CGTGTTTCAGGGAAAAAGAC+GGG - chr8_1:85162278-85162297 Msa1221540:intron 45.0%
ATTCTGCTAGTGGAGAAGAC+AGG - chr8_1:85162510-85162529 Msa1221540:intron 45.0%
TTCTGCTAGTGGAGAAGACA+GGG - chr8_1:85162511-85162530 Msa1221540:intron 45.0%
AATTGTAGGGATGAAGCCAG+AGG - chr8_1:85162583-85162602 Msa1221540:intron 45.0%
AAGCTGTCATGGAGAGCTTA+TGG - chr8_1:85162775-85162794 Msa1221540:intron 45.0%
CTAGTGGAGCTGATACTACA+AGG - chr8_1:85163031-85163050 Msa1221540:intron 45.0%
GCTAGAGAGTTGCACAGAAA+TGG - chr8_1:85163078-85163097 Msa1221540:intron 45.0%
AGAGTTGCACAGAAATGGGT+TGG - chr8_1:85163083-85163102 Msa1221540:intron 45.0%
AACACCCTTAACTCCTAGCA+TGG + chr8_1:85163541-85163560 None:intergenic 45.0%
CTTCTCCGACTAGACAAAGT+TGG + chr8_1:85163585-85163604 None:intergenic 45.0%
! CTTTTCCCACTAGACGAAGT+TGG + chr8_1:85163872-85163891 None:intergenic 45.0%
! GTCAACGAGACTCGTTTTGT+AGG + chr8_1:85164106-85164125 None:intergenic 45.0%
TAGCAGACAAGTCTCTTGGA+AGG + chr8_1:85164151-85164170 None:intergenic 45.0%
AGAAAACTCCAGTCCAGAAC+TGG - chr8_1:85164541-85164560 Msa1221540:CDS 45.0%
! AACTGGCTTCGATCTAGGTT+TGG - chr8_1:85164558-85164577 Msa1221540:CDS 45.0%
! GGTTATATTTGGCTCGCAGT+AGG - chr8_1:85164579-85164598 Msa1221540:CDS 45.0%
! TATATTTGGCTCGCAGTAGG+GGG - chr8_1:85164582-85164601 Msa1221540:CDS 45.0%
! AATCAACTAGGGGTGTGTGA+TGG + chr8_1:85164675-85164694 None:intergenic 45.0%
!! CTCCGATGTTTGGTTCTTCA+TGG + chr8_1:85164731-85164750 None:intergenic 45.0%
ATATGAACTAGGCAAGACCC+TGG - chr8_1:85164866-85164885 Msa1221540:CDS 45.0%
TATGAACTAGGCAAGACCCT+GGG - chr8_1:85164867-85164886 Msa1221540:CDS 45.0%
GTTCATTGTCAACGGCAACA+TGG + chr8_1:85164992-85165011 None:intergenic 45.0%
ATGAGAGTGATGAACCTGCA+TGG - chr8_1:85165048-85165067 Msa1221540:intron 45.0%
ATCCATAGCAGAAGTCTTCG+CGG + chr8_1:85165095-85165114 None:intergenic 45.0%
CGAAGACTTCTGCTATGGAT+GGG - chr8_1:85165095-85165114 Msa1221540:CDS 45.0%
!! TTTGATGGTGTTGTCGTGTC+GGG - chr8_1:85165134-85165153 Msa1221540:CDS 45.0%
CCCGTGTGACTGTGTTAATA+TGG - chr8_1:85165160-85165179 Msa1221540:CDS 45.0%
GGAAAACTAATGAGGCAACG+TGG + chr8_1:85165223-85165242 None:intergenic 45.0%
GAAGGAACGAACACGAAGAG+AGG + chr8_1:85162028-85162047 None:intergenic 50.0%
ACTTGGACTCCGTAAGTGTC+TGG + chr8_1:85162063-85162082 None:intergenic 50.0%
! GCACTTAAGGAGCGTGTTTC+AGG - chr8_1:85162266-85162285 Msa1221540:intron 50.0%
GGAGAAGACAGGGTTGTAGT+TGG - chr8_1:85162521-85162540 Msa1221540:intron 50.0%
! CCTTTGTCGTTTATCCGGAC+AGG + chr8_1:85162663-85162682 None:intergenic 50.0%
CCTGTCCGGATAAACGACAA+AGG - chr8_1:85162660-85162679 Msa1221540:intron 50.0%
! AGGACCCAAATTTGGTGAGC+AGG + chr8_1:85163945-85163964 None:intergenic 50.0%
! AGTCTCTTGGAAGGCTTGGT+CGG + chr8_1:85164142-85164161 None:intergenic 50.0%
GACAAGTCTCTTGGAAGGCT+TGG + chr8_1:85164146-85164165 None:intergenic 50.0%
! TCCAGAACTGGCTTCGATCT+AGG - chr8_1:85164553-85164572 Msa1221540:CDS 50.0%
ACCTAGATCGAAGCCAGTTC+TGG + chr8_1:85164557-85164576 None:intergenic 50.0%
! ATATTTGGCTCGCAGTAGGG+GGG - chr8_1:85164583-85164602 Msa1221540:CDS 50.0%
! CTAGGGGTGTGTGATGGTAA+TGG + chr8_1:85164669-85164688 None:intergenic 50.0%
GCGAAGACTTCTGCTATGGA+TGG - chr8_1:85165094-85165113 Msa1221540:CDS 50.0%
AAATATGTGCGGCGAGTGCA+AGG + chr8_1:85165423-85165442 None:intergenic 50.0%
! TTGGAAGGCTTGGTCGGAAG+AGG + chr8_1:85164136-85164155 None:intergenic 55.0%
!! GATCGAAGCCAGTTCTGGAC+TGG + chr8_1:85164552-85164571 None:intergenic 55.0%
GAGTGATGAACCTGCATGGC+AGG - chr8_1:85165052-85165071 Msa1221540:intron 55.0%
ATGAACCTGCATGGCAGGCA+AGG - chr8_1:85165057-85165076 Msa1221540:CDS 55.0%
AGAAACCTTGCCTGCCATGC+AGG + chr8_1:85165065-85165084 None:intergenic 55.0%
GACCGCGAAGACTTCTGCTA+TGG - chr8_1:85165090-85165109 Msa1221540:CDS 55.0%
GGCTCGCAGTAGGGGGGATT+CGG - chr8_1:85164589-85164608 Msa1221540:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 85161692 85165443 85161692 ID=Msa1221540;Name=Msa1221540
chr8_1 mRNA 85161692 85165443 85161692 ID=Msa1221540-mRNA-1;Parent=Msa1221540;Name=Msa1221540-mRNA-1;_AED=0.06;_eAED=0.06;_QI=128|1|1|1|1|1|5|310|265
chr8_1 exon 85161692 85162165 85161692 ID=Msa1221540-mRNA-1:exon:30646;Parent=Msa1221540-mRNA-1
chr8_1 exon 85163985 85164105 85163985 ID=Msa1221540-mRNA-1:exon:30645;Parent=Msa1221540-mRNA-1
chr8_1 exon 85164531 85164626 85164531 ID=Msa1221540-mRNA-1:exon:30644;Parent=Msa1221540-mRNA-1
chr8_1 exon 85164750 85164905 85164750 ID=Msa1221540-mRNA-1:exon:30643;Parent=Msa1221540-mRNA-1
chr8_1 exon 85165055 85165443 85165055 ID=Msa1221540-mRNA-1:exon:30642;Parent=Msa1221540-mRNA-1
chr8_1 five_prime_UTR 85165316 85165443 85165316 ID=Msa1221540-mRNA-1:five_prime_utr;Parent=Msa1221540-mRNA-1
chr8_1 CDS 85165055 85165315 85165055 ID=Msa1221540-mRNA-1:cds;Parent=Msa1221540-mRNA-1
chr8_1 CDS 85164750 85164905 85164750 ID=Msa1221540-mRNA-1:cds;Parent=Msa1221540-mRNA-1
chr8_1 CDS 85164531 85164626 85164531 ID=Msa1221540-mRNA-1:cds;Parent=Msa1221540-mRNA-1
chr8_1 CDS 85163985 85164105 85163985 ID=Msa1221540-mRNA-1:cds;Parent=Msa1221540-mRNA-1
chr8_1 CDS 85162002 85162165 85162002 ID=Msa1221540-mRNA-1:cds;Parent=Msa1221540-mRNA-1
chr8_1 three_prime_UTR 85161692 85162001 85161692 ID=Msa1221540-mRNA-1:three_prime_utr;Parent=Msa1221540-mRNA-1
Gene Sequence

>Msa1221540

ATGACACTCATTTCTTCACTCTGTTCTTTTCCTCCAATTCATTCATCTTCTCCATTTTCAAATTCTGCATTAACATGTTCAACTTCTAACCTTAGAATTCAATTTCAATCCTATGCTTCTTCCATAAACATTTGCACCCAAAAAATCGACACCTCTTTGATCACAATCGCTGAATCTTTCTACGATGATGAATTCTGGGCTGCTTCCTCTCTTCGTGTTCGTTCCTTCAACCAATTTCGTCCAGACACTTACGGAGTCCAAGATCATGCTAAGTACTTGGCTGAACGTGAGTTTGAAGCACTTAAGGAGCGTGTTTCAGGGAAAAAGACGGGCTTTAGAAGAGTTTCTTGCATAAATGCTTCTCTTCCTATGTCACATTTATCTAGCCTCTATGATGATTTATGTTCTTCATGTAAGTATTCTGCTAGTGGAGAAGACAGGGTTGTAGTTGGTTCTCTTGATCTTAATCAGTGCTTGAGTCTTCCTGATGAAATTGTAGGGATGAAGCCAGAGGCTAGTGGAGCTGATACTACAAGGGCGTATCTTAGTAATGTATGTGTTGCTAGAGAGTTGCACAGAAATGGGTTGGCATATGAACTTCTTGAAAAGTCAAAGTCAGTTGCTCGTAATTGGGGCATAACAGATTTGTACGTCCATGTTGCCGTTGACAATGAACCAGCAAAGAAATTGTACATGAAGAGCGGGTTTGTTTATGAGAGTGATGAACCTGCATGGCAGGCAAGGTTTCTTGATCGACCGCGAAGACTTCTGCTATGGATGGGTCTTTCAATCACCTAA

Protein sequence

>Msa1221540

MTLISSLCSFPPIHSSSPFSNSALTCSTSNLRIQFQSYASSINICTQKIDTSLITIAESFYDDEFWAASSLRVRSFNQFRPDTYGVQDHAKYLAEREFEALKERVSGKKTGFRRVSCINASLPMSHLSSLYDDLCSSCKYSASGEDRVVVGSLDLNQCLSLPDEIVGMKPEASGADTTRAYLSNVCVARELHRNGLAYELLEKSKSVARNWGITDLYVHVAVDNEPAKKLYMKSGFVYESDEPAWQARFLDRPRRLLLWMGLSIT*