AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0421720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421720 MtrunA17_Chr3g0122231 94.490 363 15 2 1 363 1 358 0.0 662
Msa0421720 MtrunA17_Chr8g0377611 71.304 345 87 3 22 363 29 364 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421720 AT1G10830.1 76.897 290 67 0 74 363 78 367 1.55e-177 498
Msa0421720 AT1G10830.2 73.936 188 49 0 74 261 78 265 7.03e-103 305
Msa0421720 AT1G10830.3 74.545 110 28 0 74 183 78 187 1.13e-52 174

Find 96 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCTAAAAGATTAA+AGG 0.126652 3_2:+70745182 None:intergenic
GATTTATTTCGCCGCAATTT+TGG 0.154342 3_2:-70746243 Msa0421720:CDS
TTAATTTCACATCATCTATT+TGG 0.187467 3_2:-70744636 Msa0421720:CDS
GCAAGACAGATCCTTGTTTC+TGG 0.192408 3_2:+70744173 None:intergenic
CATTACCCATTCTTCAATAA+AGG 0.235780 3_2:-70746336 Msa0421720:CDS
AAACCGCAAATATGAGAATT+AGG 0.277606 3_2:+70745581 None:intergenic
GGTGTCTTGCTCATACAATT+TGG 0.284942 3_2:-70744695 Msa0421720:CDS
TATGAGGAGCGTTGAGAAGT+AGG 0.327710 3_2:+70746422 None:intergenic
TCTCTCACAGGTTCAACTTC+AGG 0.333892 3_2:-70746361 Msa0421720:CDS
AATGCAGTAATTACTAAGTA+TGG 0.338106 3_2:+70744465 None:intergenic
GTGGCTGTTGCAGCTTCAAT+TGG 0.349115 3_2:-70744660 Msa0421720:CDS
AGATGGTTGGTCAGGTAATC+TGG 0.354286 3_2:-70744716 Msa0421720:CDS
TGCTGTTCAGATGGTTGGTC+AGG 0.355164 3_2:-70744724 Msa0421720:intron
GAGCGTTGAGAAGTAGGTTT+TGG 0.361636 3_2:+70746428 None:intergenic
CACATCATCTATTTGGTGCT+TGG 0.366412 3_2:-70744629 Msa0421720:CDS
AAAATACATCTATATGAAAC+TGG 0.374022 3_2:-70745144 Msa0421720:CDS
CGGAACAGAAAATAACTTCA+TGG 0.384156 3_2:-70746265 Msa0421720:CDS
TTTATTAATCACAGATATGA+TGG 0.389024 3_2:-70745297 Msa0421720:CDS
CCATCAAGGATTGCTGCAAA+AGG 0.390457 3_2:+70744534 None:intergenic
ATTGATAACTCAACTGGCTT+TGG 0.394276 3_2:-70746188 Msa0421720:CDS
CAAGACAGATCCTTGTTTCT+GGG 0.398701 3_2:+70744174 None:intergenic
GATCCTAATTCTCATATTTG+CGG 0.403823 3_2:-70745584 Msa0421720:CDS
GAAAATAAAATAGAAATGAT+TGG 0.405818 3_2:-70744262 Msa0421720:three_prime_UTR
CTTGCTCATACAATTTGGAT+TGG 0.409860 3_2:-70744690 Msa0421720:CDS
TCTAAAAGATTAAAGGTTGA+AGG 0.413154 3_2:+70745189 None:intergenic
TCATGTAAAATCTAATGTAT+AGG 0.422428 3_2:-70744353 Msa0421720:three_prime_UTR
TCTTCATTCTAAATGTGGTA+TGG 0.429366 3_2:-70746211 Msa0421720:CDS
AACAAAGATGGGTGATGGGT+TGG 0.432814 3_2:+70746482 None:intergenic
TTGCTCATACAATTTGGATT+GGG 0.435090 3_2:-70744689 Msa0421720:CDS
CTTGCATAAACCGTGTTCTA+TGG 0.437728 3_2:-70744155 Msa0421720:three_prime_UTR
GGAATATGAAATGGAATAAG+AGG 0.440648 3_2:+70746454 None:intergenic
AAACTAGCAGCCTGCATAAG+AGG 0.442374 3_2:+70744417 None:intergenic
CTTTGCACACCCTCTTATGC+AGG 0.452520 3_2:-70744427 Msa0421720:CDS
GATTAAAGGTTGAAGGATAT+AGG 0.458002 3_2:+70745196 None:intergenic
ACAAGTGTACAGTCATTGTC+AGG 0.458144 3_2:+70744222 None:intergenic
TAAGAGGGAGAGAACAAAGA+TGG 0.458636 3_2:+70746470 None:intergenic
ATGGCTAGCCTACGGAATAC+TGG 0.465850 3_2:-70745547 Msa0421720:CDS
GTATGGATTGATAACTCAAC+TGG 0.468553 3_2:-70746194 Msa0421720:CDS
CATCTATTTGGTGCTTGGAA+TGG 0.469784 3_2:-70744624 Msa0421720:CDS
GATTAATACCTGTGGATGCC+TGG 0.472549 3_2:+70745107 None:intergenic
AATACTGGTGAGAAAATCAT+TGG 0.476132 3_2:-70745532 Msa0421720:CDS
GATGAATCCCCGGAGTACTC+TGG 0.479621 3_2:+70745256 None:intergenic
TGGCAGCTCCAGAGTACTCC+GGG 0.483611 3_2:-70745264 Msa0421720:CDS
CAACAATACCTCGTGAGAAT+CGG 0.485418 3_2:+70746133 None:intergenic
ATTTGGAGATGAGAAGTATG+AGG 0.486179 3_2:+70746406 None:intergenic
AAGAGGGAGAGAACAAAGAT+GGG 0.490152 3_2:+70746471 None:intergenic
TGTAGTGTGCATCAATAGAC+AGG 0.491933 3_2:-70744307 Msa0421720:three_prime_UTR
GCATCAATAGACAGGGTCAC+AGG 0.495328 3_2:-70744299 Msa0421720:three_prime_UTR
CTGCTAGTTTCAACCTCCAT+TGG 0.497102 3_2:-70744404 Msa0421720:CDS
GAGAGAACAAAGATGGGTGA+TGG 0.501885 3_2:+70746477 None:intergenic
TTGGTGCTTGGAATGGAGAT+AGG 0.502563 3_2:-70744617 Msa0421720:CDS
AATCCGCAGGTAATCTTTGA+CGG 0.502619 3_2:+70744511 None:intergenic
AACCTGTGAGAGAGAGATAG+TGG 0.513143 3_2:+70746371 None:intergenic
TTTAGTTTAGTTGAAGGACT+TGG 0.513559 3_2:+70746542 None:intergenic
GGTTCTCTTCATTCTAAATG+TGG 0.519664 3_2:-70746216 Msa0421720:CDS
CATCAAGGATTGCTGCAAAA+GGG 0.524831 3_2:+70744535 None:intergenic
ATTTCCTTTCCACCTACCAA+TGG 0.531822 3_2:+70744388 None:intergenic
ACAATAGTAGTGACAGCTAA+AGG 0.535492 3_2:+70745469 None:intergenic
ACCTCCATTGGTAGGTGGAA+AGG 0.536645 3_2:-70744392 Msa0421720:exon
ATTACCTGCGGATTTCTACA+AGG 0.539323 3_2:-70744502 Msa0421720:CDS
TAGTTTCAACCTCCATTGGT+AGG 0.542093 3_2:-70744400 Msa0421720:exon
TCTTGGTGACTAGAAGTTGT+GGG 0.542096 3_2:-70746601 Msa0421720:five_prime_UTR
CACAGAAGTTGATGAATCCC+CGG 0.546615 3_2:+70745246 None:intergenic
GTAATCTTTGACGGCCATCA+AGG 0.548368 3_2:+70744520 None:intergenic
AGAGAACAAAGATGGGTGAT+GGG 0.548569 3_2:+70746478 None:intergenic
AACTCCTTGTAGAAATCCGC+AGG 0.550585 3_2:+70744498 None:intergenic
AAGAATAACCAGGCATCCAC+AGG 0.553400 3_2:-70745115 Msa0421720:intron
CTCTTGGTGACTAGAAGTTG+TGG 0.553988 3_2:-70746602 Msa0421720:five_prime_UTR
CGGGGATTCATCAACTTCTG+TGG 0.555871 3_2:-70745245 Msa0421720:CDS
TCCTTTCCACCTACCAATGG+AGG 0.559081 3_2:+70744391 None:intergenic
GATATGATGGAATTCAACTC+TGG 0.560955 3_2:-70745284 Msa0421720:CDS
CTGGCAGCTCCAGAGTACTC+CGG 0.564920 3_2:-70745265 Msa0421720:CDS
GAATATGAAATGGAATAAGA+GGG 0.569325 3_2:+70746455 None:intergenic
AACCACTATCTCTCTCTCAC+AGG 0.578529 3_2:-70746373 Msa0421720:CDS
AACTAGCAGCCTGCATAAGA+GGG 0.580769 3_2:+70744418 None:intergenic
GTAATTACTGCATTAACACT+AGG 0.589570 3_2:-70744456 Msa0421720:CDS
CACAACTTCTAGTCACCAAG+AGG 0.595441 3_2:+70746603 None:intergenic
CATCAATAGACAGGGTCACA+GGG 0.597757 3_2:-70744298 Msa0421720:three_prime_UTR
AGAAGCAGAGAGTATAAGAG+AGG 0.598033 3_2:+70746511 None:intergenic
CTGGCATCATAAGAATAACC+AGG 0.600338 3_2:-70745125 Msa0421720:CDS
TTCCGTTAAACTAAAAGCTG+CGG 0.611809 3_2:+70746283 None:intergenic
TTTCAACCTCCATTGGTAGG+TGG 0.613440 3_2:-70744397 Msa0421720:exon
ACAGTGGCATGGCTAGCCTA+CGG 0.614954 3_2:-70745555 Msa0421720:CDS
AATTGTGTGACCCAGAAACA+AGG 0.617380 3_2:-70744184 Msa0421720:three_prime_UTR
AGGCGATTAGCTCAAAGACA+TGG 0.626170 3_2:-70744597 Msa0421720:CDS
GAGAACCACACCCAAAATTG+CGG 0.633481 3_2:+70746232 None:intergenic
AGGGCTCTCCGATTCTCACG+AGG 0.645915 3_2:-70746141 Msa0421720:intron
TGGTGACTAGAAGTTGTGGG+TGG 0.660340 3_2:-70746598 Msa0421720:five_prime_UTR
TGGCCGTCAAAGATTACCTG+CGG 0.666868 3_2:-70744514 Msa0421720:CDS
ACAACTTCTAGTCACCAAGA+GGG 0.683299 3_2:+70746604 None:intergenic
AATTTGGATTGGGAATTCTG+TGG 0.685087 3_2:-70744679 Msa0421720:CDS
TTGATGCACACTACAGCACG+TGG 0.701313 3_2:+70744315 None:intergenic
TTAATGTGCACCATAGAACA+CGG 0.707425 3_2:+70744145 None:intergenic
GTAGTGTGCATCAATAGACA+GGG 0.716909 3_2:-70744306 Msa0421720:three_prime_UTR
GGCAGCTCCAGAGTACTCCG+GGG 0.727870 3_2:-70745263 Msa0421720:CDS
GTAGGCTAGCCATGCCACTG+TGG 0.748430 3_2:+70745557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACATTTCAATATGATAA+CGG - chr3_2:70745404-70745423 Msa0421720:intron 15.0%
!! TCTTAATAGATATAGATATA+AGG + chr3_2:70745859-70745878 None:intergenic 15.0%
!! GAAAATAAAATAGAAATGAT+TGG - chr3_2:70746517-70746536 Msa0421720:CDS 15.0%
!!! TTTTTCCTTTATTGAAGAAT+GGG + chr3_2:70744451-70744470 None:intergenic 20.0%
!!! AAATTTGAAACGATTGTTAA+TGG + chr3_2:70744693-70744712 None:intergenic 20.0%
!! ATAAACTCTTGGAAAATTTA+TGG - chr3_2:70744807-70744826 Msa0421720:intron 20.0%
!!! AATTATATGTTGTTTCTCTT+TGG + chr3_2:70744946-70744965 None:intergenic 20.0%
!! TTTATTAATCACAGATATGA+TGG - chr3_2:70745482-70745501 Msa0421720:CDS 20.0%
!!! TGCAATTTCTAAAAGATTAA+AGG + chr3_2:70745600-70745619 None:intergenic 20.0%
!!! GTTTCATATAGATGTATTTT+AGG + chr3_2:70745635-70745654 None:intergenic 20.0%
!! AAAATACATCTATATGAAAC+TGG - chr3_2:70745635-70745654 Msa0421720:intron 20.0%
!! TTAATTTCACATCATCTATT+TGG - chr3_2:70746143-70746162 Msa0421720:CDS 20.0%
!! TCATGTAAAATCTAATGTAT+AGG - chr3_2:70746426-70746445 Msa0421720:CDS 20.0%
! TCCTTCAACTAAACTAAAAA+TGG - chr3_2:70744242-70744261 Msa0421720:three_prime_UTR 25.0%
! GAATATGAAATGGAATAAGA+GGG + chr3_2:70744327-70744346 None:intergenic 25.0%
!!! TTTTGGTTTGGAATATGAAA+TGG + chr3_2:70744337-70744356 None:intergenic 25.0%
!!! AGTGGTTTTGAATTTGAATT+TGG + chr3_2:70744393-70744412 None:intergenic 25.0%
!! CTTTTTCCTTTATTGAAGAA+TGG + chr3_2:70744452-70744471 None:intergenic 25.0%
!!! GCTCATTTGTTATTTATGTT+AGG - chr3_2:70744729-70744748 Msa0421720:intron 25.0%
!!! TCGAAATATGTGATTTTGAT+GGG - chr3_2:70745010-70745029 Msa0421720:intron 25.0%
! TTCAAGATAAAATCAGGTTT+GGG + chr3_2:70745063-70745082 None:intergenic 25.0%
! TTTCAAGATAAAATCAGGTT+TGG + chr3_2:70745064-70745083 None:intergenic 25.0%
! TGAGATTTCAAGATAAAATC+AGG + chr3_2:70745069-70745088 None:intergenic 25.0%
! ATGATTAGGAGAAAAGATAT+GGG + chr3_2:70745352-70745371 None:intergenic 25.0%
! TATGATTAGGAGAAAAGATA+TGG + chr3_2:70745353-70745372 None:intergenic 25.0%
!!! TCAATATGATAACGGTTTAA+CGG - chr3_2:70745412-70745431 Msa0421720:intron 25.0%
! GAAAAAGAAAGAGATGAAAT+TGG + chr3_2:70745564-70745583 None:intergenic 25.0%
! TCTAAAAGATTAAAGGTTGA+AGG + chr3_2:70745593-70745612 None:intergenic 25.0%
! ACTCTATACCAATAAGTTTA+TGG - chr3_2:70745700-70745719 Msa0421720:intron 25.0%
! ATGTCTATCCATAAACTTAT+TGG + chr3_2:70745711-70745730 None:intergenic 25.0%
!! TCTAATATTTTGTCGTAAGA+AGG - chr3_2:70745785-70745804 Msa0421720:intron 25.0%
! ACAAATTTATCACGTATTTG+AGG + chr3_2:70745940-70745959 None:intergenic 25.0%
!!! TTTCTATTTAGAAGAGCATT+TGG + chr3_2:70745963-70745982 None:intergenic 25.0%
! TTAGACACATTTCTTTCATT+TGG - chr3_2:70746002-70746021 Msa0421720:intron 25.0%
! AATGCAGTAATTACTAAGTA+TGG + chr3_2:70746317-70746336 None:intergenic 25.0%
GAAAAAATATCAAACCCTCT+TGG - chr3_2:70744161-70744180 Msa0421720:three_prime_UTR 30.0%
! TTTAGTTTAGTTGAAGGACT+TGG + chr3_2:70744240-70744259 None:intergenic 30.0%
!!! GCCATTTTTAGTTTAGTTGA+AGG + chr3_2:70744246-70744265 None:intergenic 30.0%
GGAATATGAAATGGAATAAG+AGG + chr3_2:70744328-70744347 None:intergenic 30.0%
CATTACCCATTCTTCAATAA+AGG - chr3_2:70744443-70744462 Msa0421720:CDS 30.0%
! ATTTATTTCGCCGCAATTTT+GGG - chr3_2:70744537-70744556 Msa0421720:CDS 30.0%
TCTTCATTCTAAATGTGGTA+TGG - chr3_2:70744568-70744587 Msa0421720:CDS 30.0%
TGTTAATGGTGAAGTGAAAA+GGG + chr3_2:70744679-70744698 None:intergenic 30.0%
TTGTTAATGGTGAAGTGAAA+AGG + chr3_2:70744680-70744699 None:intergenic 30.0%
!! AAGCTGTTTTCATAAACTCT+TGG - chr3_2:70744796-70744815 Msa0421720:intron 30.0%
AGATTGTTTGAGTGAACTTA+TGG + chr3_2:70744861-70744880 None:intergenic 30.0%
AAATCAATTCTGATACTCTC+TGG + chr3_2:70744984-70745003 None:intergenic 30.0%
! CTCGAAATATGTGATTTTGA+TGG - chr3_2:70745009-70745028 Msa0421720:intron 30.0%
!! GATTTTGATGGGAAAAATAC+TGG - chr3_2:70745021-70745040 Msa0421720:intron 30.0%
ATAAAATCAGGTTTGGGTAT+TGG + chr3_2:70745057-70745076 None:intergenic 30.0%
GATCCTAATTCTCATATTTG+CGG - chr3_2:70745195-70745214 Msa0421720:CDS 30.0%
AAACCGCAAATATGAGAATT+AGG + chr3_2:70745201-70745220 None:intergenic 30.0%
AATACTGGTGAGAAAATCAT+TGG - chr3_2:70745247-70745266 Msa0421720:CDS 30.0%
AGCATTTCGCTTATATGATT+AGG + chr3_2:70745366-70745385 None:intergenic 30.0%
! GCGAAATGCTTTACTTATTT+TGG - chr3_2:70745376-70745395 Msa0421720:intron 30.0%
! TGATTTTTCATCTATGATGC+AGG - chr3_2:70745454-70745473 Msa0421720:intron 30.0%
GATTAAAGGTTGAAGGATAT+AGG + chr3_2:70745586-70745605 None:intergenic 30.0%
AGTGTTAAGATTAATACCTG+TGG + chr3_2:70745683-70745702 None:intergenic 30.0%
! ATGGATAGACATGATTTTTG+TGG - chr3_2:70745719-70745738 Msa0421720:intron 30.0%
AGGATATAATGTTACTCTTG+AGG + chr3_2:70745907-70745926 None:intergenic 30.0%
GAAATGTGTCTAAATAGAGA+AGG + chr3_2:70745995-70746014 None:intergenic 30.0%
TTGCTCATACAATTTGGATT+GGG - chr3_2:70746090-70746109 Msa0421720:intron 30.0%
GTAATTACTGCATTAACACT+AGG - chr3_2:70746323-70746342 Msa0421720:CDS 30.0%
!!! TTGAGAAGTAGGTTTTGGTT+TGG + chr3_2:70744349-70744368 None:intergenic 35.0%
! ATTTGGAGATGAGAAGTATG+AGG + chr3_2:70744376-70744395 None:intergenic 35.0%
TTCCGTTAAACTAAAAGCTG+CGG + chr3_2:70744499-70744518 None:intergenic 35.0%
CGGAACAGAAAATAACTTCA+TGG - chr3_2:70744514-70744533 Msa0421720:CDS 35.0%
! GATTTATTTCGCCGCAATTT+TGG - chr3_2:70744536-70744555 Msa0421720:CDS 35.0%
GGTTCTCTTCATTCTAAATG+TGG - chr3_2:70744563-70744582 Msa0421720:CDS 35.0%
! GTATGGATTGATAACTCAAC+TGG - chr3_2:70744585-70744604 Msa0421720:CDS 35.0%
! ATTGATAACTCAACTGGCTT+TGG - chr3_2:70744591-70744610 Msa0421720:CDS 35.0%
!!! CTTTTGTTGATGCTGTTTCA+GGG - chr3_2:70744619-70744638 Msa0421720:CDS 35.0%
!! TGTTGTTTCTCTTTGGCTAT+GGG + chr3_2:70744939-70744958 None:intergenic 35.0%
!! ATGTTGTTTCTCTTTGGCTA+TGG + chr3_2:70744940-70744959 None:intergenic 35.0%
! TCATTGGTGAAAGAGCTTTT+CGG - chr3_2:70745263-70745282 Msa0421720:CDS 35.0%
!!! CTTTTCGGGTTATTTTTGCA+GGG - chr3_2:70745278-70745297 Msa0421720:CDS 35.0%
ACAATAGTAGTGACAGCTAA+AGG + chr3_2:70745313-70745332 None:intergenic 35.0%
! GATATGATGGAATTCAACTC+TGG - chr3_2:70745495-70745514 Msa0421720:CDS 35.0%
! GTATTTGAGGATGTTTTACG+AGG + chr3_2:70745927-70745946 None:intergenic 35.0%
!!! GATTTGTTTTGCTGTTCAGA+TGG - chr3_2:70746046-70746065 Msa0421720:intron 35.0%
CTTGCTCATACAATTTGGAT+TGG - chr3_2:70746089-70746108 Msa0421720:intron 35.0%
! AATTTGGATTGGGAATTCTG+TGG - chr3_2:70746100-70746119 Msa0421720:intron 35.0%
! TACAGTCATTGTCAGGTTTT+TGG + chr3_2:70746553-70746572 None:intergenic 35.0%
ACAACTTCTAGTCACCAAGA+GGG + chr3_2:70744178-70744197 None:intergenic 40.0%
! TCTTGGTGACTAGAAGTTGT+GGG - chr3_2:70744178-70744197 Msa0421720:three_prime_UTR 40.0%
! AGAAGCAGAGAGTATAAGAG+AGG + chr3_2:70744271-70744290 None:intergenic 40.0%
AGAGAACAAAGATGGGTGAT+GGG + chr3_2:70744304-70744323 None:intergenic 40.0%
AAGAGGGAGAGAACAAAGAT+GGG + chr3_2:70744311-70744330 None:intergenic 40.0%
TAAGAGGGAGAGAACAAAGA+TGG + chr3_2:70744312-70744331 None:intergenic 40.0%
!!! CTCCGCAGCTTTTAGTTTAA+CGG - chr3_2:70744494-70744513 Msa0421720:CDS 40.0%
!!! GCTTTTGTTGATGCTGTTTC+AGG - chr3_2:70744618-70744637 Msa0421720:CDS 40.0%
CAACAATACCTCGTGAGAAT+CGG + chr3_2:70744649-70744668 None:intergenic 40.0%
!! CTGCATTAGTCGTTGATTTG+TGG - chr3_2:70745135-70745154 Msa0421720:CDS 40.0%
! ATATTTGCGGTTTTCCACAG+TGG - chr3_2:70745208-70745227 Msa0421720:CDS 40.0%
! TTTTCTCACCAGTATTCCGT+AGG + chr3_2:70745243-70745262 None:intergenic 40.0%
! CATTGGTGAAAGAGCTTTTC+GGG - chr3_2:70745264-70745283 Msa0421720:CDS 40.0%
!!! GCTTTTCGGGTTATTTTTGC+AGG - chr3_2:70745277-70745296 Msa0421720:CDS 40.0%
CTGGCATCATAAGAATAACC+AGG - chr3_2:70745654-70745673 Msa0421720:intron 40.0%
! ACTCTTGAGGATGTTTTACG+AGG + chr3_2:70745894-70745913 None:intergenic 40.0%
! GTTTCAATTGCTCTGAGTGA+AGG - chr3_2:70746024-70746043 Msa0421720:intron 40.0%
!!! TGTTTTGCTGTTCAGATGGT+TGG - chr3_2:70746050-70746069 Msa0421720:intron 40.0%
GGTGTCTTGCTCATACAATT+TGG - chr3_2:70746084-70746103 Msa0421720:intron 40.0%
!! CACATCATCTATTTGGTGCT+TGG - chr3_2:70746150-70746169 Msa0421720:CDS 40.0%
!! CATCTATTTGGTGCTTGGAA+TGG - chr3_2:70746155-70746174 Msa0421720:CDS 40.0%
CATCAAGGATTGCTGCAAAA+GGG + chr3_2:70746247-70746266 None:intergenic 40.0%
AATCCGCAGGTAATCTTTGA+CGG + chr3_2:70746271-70746290 None:intergenic 40.0%
ATTACCTGCGGATTTCTACA+AGG - chr3_2:70746277-70746296 Msa0421720:CDS 40.0%
TAGTTTCAACCTCCATTGGT+AGG - chr3_2:70746379-70746398 Msa0421720:CDS 40.0%
ATTTCCTTTCCACCTACCAA+TGG + chr3_2:70746394-70746413 None:intergenic 40.0%
TGTAGTGTGCATCAATAGAC+AGG - chr3_2:70746472-70746491 Msa0421720:CDS 40.0%
GTAGTGTGCATCAATAGACA+GGG - chr3_2:70746473-70746492 Msa0421720:CDS 40.0%
ACAAGTGTACAGTCATTGTC+AGG + chr3_2:70746560-70746579 None:intergenic 40.0%
AATTGTGTGACCCAGAAACA+AGG - chr3_2:70746595-70746614 Msa0421720:five_prime_UTR 40.0%
! CAAGACAGATCCTTGTTTCT+GGG + chr3_2:70746608-70746627 None:intergenic 40.0%
CTTGCATAAACCGTGTTCTA+TGG - chr3_2:70746624-70746643 Msa0421720:five_prime_UTR 40.0%
CACAACTTCTAGTCACCAAG+AGG + chr3_2:70744179-70744198 None:intergenic 45.0%
! CTCTTGGTGACTAGAAGTTG+TGG - chr3_2:70744177-70744196 Msa0421720:three_prime_UTR 45.0%
!! AACAAAGATGGGTGATGGGT+TGG + chr3_2:70744300-70744319 None:intergenic 45.0%
GAGAGAACAAAGATGGGTGA+TGG + chr3_2:70744305-70744324 None:intergenic 45.0%
!!! GAGCGTTGAGAAGTAGGTTT+TGG + chr3_2:70744354-70744373 None:intergenic 45.0%
!! TATGAGGAGCGTTGAGAAGT+AGG + chr3_2:70744360-70744379 None:intergenic 45.0%
AACCACTATCTCTCTCTCAC+AGG - chr3_2:70744406-70744425 Msa0421720:CDS 45.0%
AACCTGTGAGAGAGAGATAG+TGG + chr3_2:70744411-70744430 None:intergenic 45.0%
TCTCTCACAGGTTCAACTTC+AGG - chr3_2:70744418-70744437 Msa0421720:CDS 45.0%
GAAAAAGACTCGAGCTTCGT+GGG - chr3_2:70744465-70744484 Msa0421720:CDS 45.0%
GAGAACCACACCCAAAATTG+CGG + chr3_2:70744550-70744569 None:intergenic 45.0%
CCTGCAGAGTAACATGTCAA+GGG + chr3_2:70745165-70745184 None:intergenic 45.0%
ACCTGCAGAGTAACATGTCA+AGG + chr3_2:70745166-70745185 None:intergenic 45.0%
TTGACATGTTACTCTGCAGG+TGG - chr3_2:70745165-70745184 Msa0421720:CDS 45.0%
!! CACAGAAGTTGATGAATCCC+CGG + chr3_2:70745536-70745555 None:intergenic 45.0%
AAGAATAACCAGGCATCCAC+AGG - chr3_2:70745664-70745683 Msa0421720:intron 45.0%
GATTAATACCTGTGGATGCC+TGG + chr3_2:70745675-70745694 None:intergenic 45.0%
! AGATGGTTGGTCAGGTAATC+TGG - chr3_2:70746063-70746082 Msa0421720:intron 45.0%
! TTGGTGCTTGGAATGGAGAT+AGG - chr3_2:70746162-70746181 Msa0421720:CDS 45.0%
! AGGCGATTAGCTCAAAGACA+TGG - chr3_2:70746182-70746201 Msa0421720:CDS 45.0%
CCATCAAGGATTGCTGCAAA+AGG + chr3_2:70746248-70746267 None:intergenic 45.0%
! CCTTTTGCAGCAATCCTTGA+TGG - chr3_2:70746245-70746264 Msa0421720:CDS 45.0%
GTAATCTTTGACGGCCATCA+AGG + chr3_2:70746262-70746281 None:intergenic 45.0%
AACTCCTTGTAGAAATCCGC+AGG + chr3_2:70746284-70746303 None:intergenic 45.0%
AACTAGCAGCCTGCATAAGA+GGG + chr3_2:70746364-70746383 None:intergenic 45.0%
AAACTAGCAGCCTGCATAAG+AGG + chr3_2:70746365-70746384 None:intergenic 45.0%
! CTGCTAGTTTCAACCTCCAT+TGG - chr3_2:70746375-70746394 Msa0421720:CDS 45.0%
TTTCAACCTCCATTGGTAGG+TGG - chr3_2:70746382-70746401 Msa0421720:CDS 45.0%
CATCAATAGACAGGGTCACA+GGG - chr3_2:70746481-70746500 Msa0421720:CDS 45.0%
! GCAAGACAGATCCTTGTTTC+TGG + chr3_2:70746609-70746628 None:intergenic 45.0%
TGGTGACTAGAAGTTGTGGG+TGG - chr3_2:70744181-70744200 Msa0421720:three_prime_UTR 50.0%
GGAAAAAGACTCGAGCTTCG+TGG - chr3_2:70744464-70744483 Msa0421720:CDS 50.0%
!! TTTCGCCGCAATTTTGGGTG+TGG - chr3_2:70744542-70744561 Msa0421720:CDS 50.0%
CCCTTGACATGTTACTCTGC+AGG - chr3_2:70745162-70745181 Msa0421720:CDS 50.0%
!! ATGGCTAGCCTACGGAATAC+TGG - chr3_2:70745232-70745251 Msa0421720:CDS 50.0%
CGGGGATTCATCAACTTCTG+TGG - chr3_2:70745534-70745553 Msa0421720:CDS 50.0%
! TGCTGTTCAGATGGTTGGTC+AGG - chr3_2:70746055-70746074 Msa0421720:intron 50.0%
GTGGCTGTTGCAGCTTCAAT+TGG - chr3_2:70746119-70746138 Msa0421720:intron 50.0%
TGGCCGTCAAAGATTACCTG+CGG - chr3_2:70746265-70746284 Msa0421720:CDS 50.0%
CTTTGCACACCCTCTTATGC+AGG - chr3_2:70746352-70746371 Msa0421720:CDS 50.0%
ACCTCCATTGGTAGGTGGAA+AGG - chr3_2:70746387-70746406 Msa0421720:CDS 50.0%
TCCTTTCCACCTACCAATGG+AGG + chr3_2:70746391-70746410 None:intergenic 50.0%
TTGATGCACACTACAGCACG+TGG + chr3_2:70746467-70746486 None:intergenic 50.0%
GCATCAATAGACAGGGTCAC+AGG - chr3_2:70746480-70746499 Msa0421720:CDS 50.0%
! TGCGGTTTTCCACAGTGGCA+TGG - chr3_2:70745213-70745232 Msa0421720:CDS 55.0%
!! ACAGTGGCATGGCTAGCCTA+CGG - chr3_2:70745224-70745243 Msa0421720:CDS 55.0%
! GATGAATCCCCGGAGTACTC+TGG + chr3_2:70745526-70745545 None:intergenic 55.0%
AGGGCTCTCCGATTCTCACG+AGG - chr3_2:70744638-70744657 Msa0421720:CDS 60.0%
! GTAGGCTAGCCATGCCACTG+TGG + chr3_2:70745225-70745244 None:intergenic 60.0%
! CTGGCAGCTCCAGAGTACTC+CGG - chr3_2:70745514-70745533 Msa0421720:CDS 60.0%
! TGGCAGCTCCAGAGTACTCC+GGG - chr3_2:70745515-70745534 Msa0421720:CDS 60.0%
! GGCAGCTCCAGAGTACTCCG+GGG - chr3_2:70745516-70745535 Msa0421720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 70744146 70746655 70744146 ID=Msa0421720;Name=Msa0421720
chr3_2 mRNA 70744146 70746655 70744146 ID=Msa0421720-mRNA-1;Parent=Msa0421720;Name=Msa0421720-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|1|1|1|1|1|4|255|363
chr3_2 exon 70744146 70744736 70744146 ID=Msa0421720-mRNA-1:exon:17090;Parent=Msa0421720-mRNA-1
chr3_2 exon 70745116 70745325 70745116 ID=Msa0421720-mRNA-1:exon:17089;Parent=Msa0421720-mRNA-1
chr3_2 exon 70745471 70745617 70745471 ID=Msa0421720-mRNA-1:exon:17088;Parent=Msa0421720-mRNA-1
chr3_2 exon 70746142 70746655 70746142 ID=Msa0421720-mRNA-1:exon:17087;Parent=Msa0421720-mRNA-1
chr3_2 five_prime_UTR 70746541 70746655 70746541 ID=Msa0421720-mRNA-1:five_prime_utr;Parent=Msa0421720-mRNA-1
chr3_2 CDS 70746142 70746540 70746142 ID=Msa0421720-mRNA-1:cds;Parent=Msa0421720-mRNA-1
chr3_2 CDS 70745471 70745617 70745471 ID=Msa0421720-mRNA-1:cds;Parent=Msa0421720-mRNA-1
chr3_2 CDS 70745116 70745325 70745116 ID=Msa0421720-mRNA-1:cds;Parent=Msa0421720-mRNA-1
chr3_2 CDS 70744401 70744736 70744401 ID=Msa0421720-mRNA-1:cds;Parent=Msa0421720-mRNA-1
chr3_2 three_prime_UTR 70744146 70744400 70744146 ID=Msa0421720-mRNA-1:three_prime_utr;Parent=Msa0421720-mRNA-1
Gene Sequence

>Msa0421720

ATGGCTGCCTCTCTTATACTCTCTGCTTCTTTCTCTCCAACCCATCACCCATCTTTGTTCTCTCCCTCTTATTCCATTTCATATTCCAAACCAAAACCTACTTCTCAACGCTCCTCATACTTCTCATCTCCAAATTCAAATTCAAAACCACTATCTCTCTCTCACAGGTTCAACTTCAGGTTCATTACCCATTCTTCAATAAAGGAAAAAGACTCGAGCTTCGTGGGAGAAGACTCCGCAGCTTTTAGTTTAACGGAACAGAAAATAACTTCATGGATTTATTTCGCCGCAATTTTGGGTGTGGTTCTCTTCATTCTAAATGTGGTATGGATTGATAACTCAACTGGCTTTGGTAAAGCTTTTGTTGATGCTGTTTCAGGGCTCTCCGATTCTCACGAGGTGGTAATGTTGATCCTAATTCTCATATTTGCGGTTTTCCACAGTGGCATGGCTAGCCTACGGAATACTGGTGAGAAAATCATTGGTGAAAGAGCTTTTCGGGTTATTTTTGCAGGGATATCACTACCTTTAGCTGTCACTACTATTGTGTATTTTATTAATCACAGATATGATGGAATTCAACTCTGGCAGCTCCAGAGTACTCCGGGGATTCATCAACTTCTGTGGCTTTCCAATTTCATCTCTTTCTTTTTCCTATATCCTTCAACCTTTAATCTTTTAGAAATTGCAGCAGTTGACAAGCCTAAAATACATCTATATGAAACTGGCATCATAAGAATAACCAGGCATCCACAGATGGTTGGTCAGGTAATCTGGTGTCTTGCTCATACAATTTGGATTGGGAATTCTGTGGCTGTTGCAGCTTCAATTGGCTTAATTTCACATCATCTATTTGGTGCTTGGAATGGAGATAGGCGATTAGCTCAAAGACATGGAGAAGATTTTGAGATAGTTAAGCGTCGAACAAGTATTGTCCCTTTTGCAGCAATCCTTGATGGCCGTCAAAGATTACCTGCGGATTTCTACAAGGAGTTTATTAGATTACCATACTTAGTAATTACTGCATTAACACTAGGAGCTTACTTTGCACACCCTCTTATGCAGGCTGCTAGTTTCAACCTCCATTGGTAG

Protein sequence

>Msa0421720

MAASLILSASFSPTHHPSLFSPSYSISYSKPKPTSQRSSYFSSPNSNSKPLSLSHRFNFRFITHSSIKEKDSSFVGEDSAAFSLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSHEVVMLILILIFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIVYFINHRYDGIQLWQLQSTPGIHQLLWLSNFISFFFLYPSTFNLLEIAAVDKPKIHLYETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLISHHLFGAWNGDRRLAQRHGEDFEIVKRRTSIVPFAAILDGRQRLPADFYKEFIRLPYLVITALTLGAYFAHPLMQAASFNLHW*