AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1069900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069900 MtrunA17_Chr7g0252041 97.314 484 2 5 1 482 1 475 0.0 947
Msa1069900 MtrunA17_Chr3g0131691 67.719 285 60 8 211 481 217 483 3.42e-119 358
Msa1069900 MtrunA17_Chr3g0141091 44.724 199 82 5 283 480 163 334 6.49e-40 147
Msa1069900 MtrunA17_Chr5g0411541 44.878 205 86 5 280 480 141 322 9.83e-38 140
Msa1069900 MtrunA17_Chr1g0211081 32.143 252 135 6 241 474 280 513 5.59e-31 125
Msa1069900 MtrunA17_Chr3g0089131 67.241 58 19 0 398 455 5 62 5.63e-21 87.4
Msa1069900 MtrunA17_Chr8g0365711 29.787 188 123 3 286 473 237 415 1.25e-18 87.8
Msa1069900 MtrunA17_Chr2g0298751 33.163 196 118 6 284 472 43 232 1.62e-18 85.1
Msa1069900 MtrunA17_Chr1g0185621 34.463 177 104 5 283 455 465 633 2.79e-18 87.8
Msa1069900 MtrunA17_Chr3g0135471 69.767 43 13 0 413 455 1 43 3.06e-15 70.5
Msa1069900 MtrunA17_Chr5g0400671 29.412 187 110 5 293 473 154 324 1.37e-14 74.7
Msa1069900 MtrunA17_Chr5g0400661 26.263 198 135 4 286 473 138 334 1.90e-14 74.3
Msa1069900 MtrunA17_Chr2g0318461 67.442 43 14 0 413 455 1 43 2.33e-14 67.8
Msa1069900 MtrunA17_Chr4g0002801 29.787 188 112 7 295 473 154 330 4.50e-14 73.2
Msa1069900 MtrunA17_Chr2g0280161 28.931 159 98 3 295 451 179 324 7.25e-14 72.8
Msa1069900 MtrunA17_Chr8g0346161 60.000 55 22 0 291 345 289 343 7.42e-14 73.6
Msa1069900 MtrunA17_Chr2g0320291 28.758 153 94 1 281 433 121 258 8.40e-14 72.4
Msa1069900 MtrunA17_Chr7g0275821 45.977 87 44 1 291 374 250 336 9.42e-14 73.2
Msa1069900 MtrunA17_Chr4g0052841 25.510 196 133 4 284 474 283 470 9.70e-14 73.2
Msa1069900 MtrunA17_Chr4g0028071 51.562 64 31 0 286 349 142 205 1.06e-13 72.0
Msa1069900 MtrunA17_Chr8g0346151 60.000 55 22 0 291 345 277 331 1.20e-13 72.8
Msa1069900 MtrunA17_Chr4g0049331 25.352 213 121 5 270 464 107 299 3.04e-13 70.5
Msa1069900 MtrunA17_Chr4g0052821 27.551 196 125 5 286 474 283 468 3.74e-13 71.6
Msa1069900 MtrunA17_Chr8g0366751 33.133 166 96 4 291 449 460 617 4.01e-13 71.6
Msa1069900 MtrunA17_Chr3g0089121 47.436 78 34 1 322 399 1 71 4.17e-13 65.9
Msa1069900 MtrunA17_Chr4g0002781 28.856 201 123 8 280 473 162 349 5.28e-13 70.1
Msa1069900 MtrunA17_Chr7g0260841 42.045 88 44 1 268 348 323 410 1.10e-12 70.1
Msa1069900 MtrunA17_Chr4g0033391 28.293 205 128 5 268 471 125 311 1.64e-12 68.6
Msa1069900 MtrunA17_Chr5g0411341 29.231 195 119 5 291 477 491 674 1.83e-12 69.7
Msa1069900 MtrunA17_Chr5g0400621 30.189 159 97 4 294 451 158 303 7.62e-12 66.6
Msa1069900 MtrunA17_Chr4g0054571 28.169 142 97 2 295 436 152 288 8.67e-12 66.2
Msa1069900 MtrunA17_Chr3g0089111 41.228 114 55 4 220 322 113 225 9.01e-12 64.7
Msa1069900 MtrunA17_Chr7g0225901 27.461 193 111 5 268 451 62 234 1.18e-11 65.1
Msa1069900 MtrunA17_Chr8g0336681 26.752 157 110 3 295 451 158 309 1.50e-11 65.9
Msa1069900 MtrunA17_Chr2g0307131 27.184 206 126 6 268 468 156 342 1.90e-11 65.5
Msa1069900 MtrunA17_Chr5g0404921 62.264 106 18 1 51 156 1 84 3.13e-11 60.5
Msa1069900 MtrunA17_Chr2g0333621 25.248 202 134 4 279 474 122 312 3.40e-11 64.3
Msa1069900 MtrunA17_Chr4g0033291 27.273 220 139 6 254 471 119 319 4.39e-11 64.3
Msa1069900 MtrunA17_Chr0c01g0489461 28.571 217 116 9 262 445 157 367 7.92e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069900 AT3G26744.1 54.847 392 137 10 119 481 113 493 1.04e-115 350
Msa1069900 AT3G26744.4 54.847 392 137 10 119 481 113 493 1.04e-115 350
Msa1069900 AT3G26744.2 54.847 392 137 10 119 481 113 493 1.04e-115 350
Msa1069900 AT1G12860.1 56.546 359 122 7 128 481 120 449 4.80e-112 338
Msa1069900 AT3G26744.6 53.825 366 129 10 119 455 113 467 2.49e-99 307
Msa1069900 AT1G12860.2 54.655 333 117 7 128 455 120 423 2.81e-95 295
Msa1069900 AT5G65640.1 44.175 206 95 4 278 480 160 348 7.65e-38 142
Msa1069900 AT5G10570.1 42.927 205 87 4 278 480 136 312 2.09e-33 129
Msa1069900 AT2G16910.1 40.102 197 99 6 292 474 313 504 4.45e-31 126
Msa1069900 AT5G65640.2 70.270 74 19 1 278 348 160 233 2.17e-21 94.7
Msa1069900 AT1G12860.3 37.811 201 99 6 128 324 120 298 1.26e-18 87.0
Msa1069900 AT5G57150.1 32.240 183 115 4 291 470 52 228 1.24e-17 82.8
Msa1069900 AT4G29930.2 30.323 155 88 3 292 446 53 187 2.69e-16 78.6
Msa1069900 AT3G26744.5 36.325 234 111 9 119 323 113 337 6.00e-16 79.7
Msa1069900 AT4G29930.5 30.323 155 88 3 292 446 53 187 8.11e-16 77.4
Msa1069900 AT5G57150.3 33.125 160 98 4 291 447 53 206 8.73e-16 77.0
Msa1069900 AT5G57150.2 33.333 159 97 4 291 446 53 205 1.13e-15 76.6
Msa1069900 AT5G57150.5 33.333 159 97 4 291 446 52 204 1.31e-15 76.3
Msa1069900 AT4G29930.6 30.323 155 91 4 292 446 53 190 2.98e-15 75.5
Msa1069900 AT5G57150.4 33.333 159 97 4 291 446 53 205 7.20e-15 75.1
Msa1069900 AT2G46510.1 46.914 81 35 1 276 348 370 450 8.06e-15 77.4
Msa1069900 AT2G28160.1 38.462 104 51 2 246 349 97 187 1.33e-14 75.1
Msa1069900 AT2G28160.2 38.462 104 51 2 246 349 97 187 1.56e-14 74.7
Msa1069900 AT4G29930.4 47.761 67 35 0 292 358 53 119 1.80e-14 72.0
Msa1069900 AT4G09820.1 33.333 153 67 4 286 435 353 473 1.80e-14 76.3
Msa1069900 AT4G29930.1 47.761 67 35 0 292 358 53 119 3.61e-14 72.8
Msa1069900 AT4G29930.3 47.059 68 36 0 291 358 52 119 5.19e-14 72.4
Msa1069900 AT4G29930.7 47.059 68 36 0 291 358 52 119 5.19e-14 72.4
Msa1069900 AT1G01260.1 41.322 121 54 4 254 357 382 502 1.21e-13 73.6
Msa1069900 AT1G01260.2 41.322 121 54 4 254 357 382 502 1.21e-13 73.6
Msa1069900 AT1G01260.3 41.322 121 54 4 254 357 382 502 1.21e-13 73.6
Msa1069900 AT4G17880.1 30.159 189 114 6 291 477 414 586 1.96e-13 73.2
Msa1069900 AT5G46760.1 31.707 164 94 5 291 449 413 563 3.70e-13 72.0
Msa1069900 AT1G32640.1 29.744 195 108 6 291 477 450 623 4.48e-13 72.0
Msa1069900 AT4G00870.1 47.761 67 33 1 286 350 240 306 2.16e-12 69.3
Msa1069900 AT1G10610.3 41.379 87 46 1 269 350 138 224 2.94e-12 68.2
Msa1069900 AT2G22760.2 23.669 169 118 4 284 451 110 268 4.35e-12 67.0
Msa1069900 AT1G10610.2 41.379 87 46 1 269 350 205 291 4.48e-12 68.2
Msa1069900 AT5G46830.1 31.250 192 96 8 291 468 341 510 5.46e-12 68.2
Msa1069900 AT1G10610.1 41.379 87 46 1 269 350 235 321 6.16e-12 67.8
Msa1069900 AT2G22760.1 23.669 169 118 4 284 451 110 268 1.19e-11 65.9
Msa1069900 AT2G22770.1 26.752 157 110 3 284 436 123 278 4.37e-11 64.7
Msa1069900 AT4G16430.1 41.975 81 40 1 275 348 295 375 5.48e-11 65.1
Msa1069900 AT2G22750.5 27.273 143 97 2 294 436 151 286 7.87e-11 63.9
Msa1069900 AT2G22750.4 27.273 143 97 2 294 436 155 290 8.95e-11 63.5
Msa1069900 AT2G22750.3 27.273 143 97 2 294 436 155 290 9.60e-11 63.5

Find 157 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAAAATGGATTCTTTA+TGG 0.120043 7_2:+65746692 Msa1069900:CDS
TTTGAAATGGGCTTTGAAAA+TGG 0.180663 7_2:+65746681 Msa1069900:CDS
GAATGATGAAGGAGAGAAAA+AGG 0.194051 7_2:-65746181 None:intergenic
AATCTATGGTGTTTGTGTTT+TGG 0.283895 7_2:-65746584 None:intergenic
TCAGGTTCGGGTTGTGGTTC+GGG 0.284310 7_2:-65746471 None:intergenic
TTTGAAAATGGATTCTTTAT+GGG 0.286594 7_2:+65746693 Msa1069900:CDS
CTACGGTTAGTACCTCTATA+AGG 0.292591 7_2:-65748838 None:intergenic
ATCAGGTTCGGGTTGTGGTT+CGG 0.308632 7_2:-65746472 None:intergenic
TCAGCCATCAAATTCTTTGC+AGG 0.331079 7_2:-65747149 None:intergenic
TGGTGTTTAGGTTCTGAGTT+AGG 0.331273 7_2:-65746390 None:intergenic
TACCAACAACCCATTTGAAA+TGG 0.332847 7_2:+65746668 Msa1069900:CDS
TCCAATGGGACTGTTGTTAC+TGG 0.340339 7_2:+65747092 Msa1069900:CDS
TGGATTTGAAATTGAATCTA+TGG 0.348162 7_2:-65746598 None:intergenic
GTTGTTGTTGTTATCAGGTT+CGG 0.365211 7_2:-65746484 None:intergenic
GCTATCTACCATGAGGGCTT+TGG 0.366010 7_2:+65748414 Msa1069900:CDS
CAGGGAAGGGTCGGCGGAGT+TGG 0.367459 7_2:-65748066 None:intergenic
AGAGGAAGGTTGAGAAGAGT+TGG 0.371993 7_2:+65746976 Msa1069900:CDS
TTGTTGTTGTTATCAGGTTC+GGG 0.372267 7_2:-65746483 None:intergenic
ATGTCTTGTTCGTGGTGTTT+AGG 0.383539 7_2:-65746402 None:intergenic
AACAAGAATCACCTTCTTCA+TGG 0.390694 7_2:+65746361 Msa1069900:CDS
TACAGGTGGAAGTTAGAGTA+AGG 0.391657 7_2:+65748338 Msa1069900:intron
TAAGCTATTCTATCTGATCT+TGG 0.393629 7_2:-65748929 None:intergenic
AGGGACCCACCCATGAAAAC+AGG 0.394342 7_2:-65746738 None:intergenic
TTGTTATCAGGTTCGGGTTG+TGG 0.401185 7_2:-65746477 None:intergenic
TGTGGTTCGGGTTTGAAGAA+AGG 0.402846 7_2:-65746459 None:intergenic
CGCTGTTTCAGAAGCGTCGT+GGG 0.403975 7_2:+65746910 Msa1069900:CDS
ACCAACAACCCATTTGAAAT+GGG 0.412468 7_2:+65746669 Msa1069900:CDS
GCTGTTATCAGTTGTTTCAA+TGG 0.414184 7_2:+65748463 Msa1069900:CDS
GCCCATTTCAAATGGGTTGT+TGG 0.416248 7_2:-65746670 None:intergenic
TTCCATACCTTGCTAATCTT+AGG 0.420834 7_2:-65747227 None:intergenic
TTTATCTTGTGTGTGAATAA+AGG 0.420835 7_2:-65746136 None:intergenic
TCATTTGTTCATAGATGGAC+AGG 0.422911 7_2:+65747905 Msa1069900:intron
TGATGATGTTGTTGTGGTTG+TGG 0.425371 7_2:-65746855 None:intergenic
AGACACAGACCTTTACTAAC+AGG 0.427733 7_2:-65748901 None:intergenic
ATGAACTTGTTGAGGTGGTA+AGG 0.429477 7_2:-65746298 None:intergenic
TCGGCGGAGTTGGTGTCAAC+GGG 0.431349 7_2:-65748056 None:intergenic
ACTTCCTGCAAAGAATTTGA+TGG 0.433280 7_2:+65747145 Msa1069900:CDS
CTTCTTGTTCCTGTTAGTAA+AGG 0.435621 7_2:+65748892 Msa1069900:three_prime_UTR
TAATAATCTTCACAACGAAC+TGG 0.439497 7_2:+65747981 Msa1069900:CDS
CAGCACTGCTTTAATTTGCT+CGG 0.447013 7_2:-65748758 None:intergenic
GTCGGCGGAGTTGGTGTCAA+CGG 0.448067 7_2:-65748057 None:intergenic
GTGGTTCGGGTTTGAAGAAA+GGG 0.450268 7_2:-65746458 None:intergenic
AGCACTGCTTTAATTTGCTC+GGG 0.451779 7_2:-65748757 None:intergenic
GCAATAGCTATTGCTATGGC+TGG 0.459874 7_2:+65746426 Msa1069900:CDS
TATCATTGAGTTTCTTCCTC+CGG 0.461791 7_2:-65747178 None:intergenic
CCTTGGATTGGATGTTCAGC+AGG 0.462769 7_2:+65748441 Msa1069900:CDS
GATAGAATAGCTTAATCTGT+AGG 0.462905 7_2:+65748938 Msa1069900:three_prime_UTR
ATGATAGGTTGTACATGCTT+AGG 0.464707 7_2:+65747195 Msa1069900:CDS
TAGATCCTCCTTGACTCGAC+AGG 0.464973 7_2:-65748085 None:intergenic
GAGGAAGGTTGAGAAGAGTT+GGG 0.468510 7_2:+65746977 Msa1069900:CDS
GGAGTACATCCTGGCCTTCT+CGG 0.468841 7_2:-65748735 None:intergenic
GGCTTTGGATAACCTTGGAT+TGG 0.469562 7_2:+65748429 Msa1069900:CDS
AATTATGATTCTGATGAGAA+TGG 0.469901 7_2:+65747053 Msa1069900:CDS
GGCGTTGGAGATTCCGAGGT+TGG 0.477216 7_2:+65746932 Msa1069900:CDS
TTTGCTCGGGGAGTACATCC+TGG 0.485199 7_2:-65748744 None:intergenic
GCAAATTAAAGCAGTGCTGT+TGG 0.486197 7_2:+65748762 Msa1069900:CDS
GCAGCAATGCCGAGAAGGCC+AGG 0.488201 7_2:+65748726 Msa1069900:intron
CATGAGAAAATTGTCTGGTA+AGG 0.488924 7_2:-65746559 None:intergenic
TACGGTTAGTACCTCTATAA+GGG 0.489290 7_2:-65748837 None:intergenic
ATGATTTGAATAATTCCAAT+GGG 0.493229 7_2:+65747078 Msa1069900:CDS
ACAAAACATATGAATGTTGA+CGG 0.497241 7_2:-65748371 None:intergenic
GAAGAAGGAAGTGGTGGTGG+TGG 0.497277 7_2:+65747002 Msa1069900:CDS
TTGGATTCAGCGGGCTACCA+TGG 0.497757 7_2:+65748781 Msa1069900:CDS
TCAGAAGCGTCGTGGGGCGT+TGG 0.498023 7_2:+65746917 Msa1069900:CDS
TTTCAAAGCCCATTTCAAAT+GGG 0.499997 7_2:-65746677 None:intergenic
ATGAGGGCTTTGGATAACCT+TGG 0.500549 7_2:+65748424 Msa1069900:CDS
AGGAAACTCAGAAGCTGAAA+GGG 0.502922 7_2:-65746757 None:intergenic
TGTTGTTGTGGTTCAGTCCA+AGG 0.506094 7_2:-65746336 None:intergenic
ATTCCGAGGTTGGAGACTGT+TGG 0.507434 7_2:+65746942 Msa1069900:CDS
ATGGACAGGGCTTCAATACT+CGG 0.509966 7_2:+65747919 Msa1069900:CDS
CGCTTCTGAAACAGCGTAGT+GGG 0.510927 7_2:-65746903 None:intergenic
TTGTTGAATTTATGATTAAG+TGG 0.511023 7_2:+65749020 Msa1069900:three_prime_UTR
ATCTGTAGGGTGGAGGAGAT+AGG 0.511971 7_2:+65748952 Msa1069900:three_prime_UTR
GAAGAAGAAGGAAGTGGTGG+TGG 0.513360 7_2:+65746999 Msa1069900:CDS
ACCAGTAACAACAGTCCCAT+TGG 0.513722 7_2:-65747093 None:intergenic
GAAGCACTGAAAGGTGGTAC+TGG 0.513909 7_2:-65746804 None:intergenic
GGAGGAAGAAACTCAATGAT+AGG 0.514773 7_2:+65747180 Msa1069900:CDS
TAGTAAAGGTCTGTGTCTCC+AGG 0.517762 7_2:+65748906 Msa1069900:three_prime_UTR
AGTTGGGAAGAAGAAGGAAG+TGG 0.519117 7_2:+65746993 Msa1069900:CDS
TGCTGATGATGATGTTGTTG+TGG 0.520294 7_2:-65746861 None:intergenic
TGGTGCATGAGAAAATTGTC+TGG 0.522663 7_2:-65746564 None:intergenic
ATTTGATGGCTGAGAGGCGC+CGG 0.526012 7_2:+65747159 Msa1069900:CDS
AATGATTTGAATAATTCCAA+TGG 0.529844 7_2:+65747077 Msa1069900:CDS
CTATTGCAATGTCTTGTTCG+TGG 0.530088 7_2:-65746410 None:intergenic
GAGGAAACTCAGAAGCTGAA+AGG 0.532923 7_2:-65746758 None:intergenic
TCAGAAGGGGAAGAAGAAGA+AGG 0.533310 7_2:+65747121 Msa1069900:CDS
TGAACTTGTTGAGGTGGTAA+GGG 0.534290 7_2:-65746297 None:intergenic
GAGAAGAGTTGGGAAGAAGA+AGG 0.536472 7_2:+65746987 Msa1069900:CDS
TTGTGTGTGAATAAAGGAAG+AGG 0.537578 7_2:-65746130 None:intergenic
CTCCTTGACTCGACAGGGAA+GGG 0.537622 7_2:-65748079 None:intergenic
TTTCCAACAGTCTCCAACCT+CGG 0.538830 7_2:-65746945 None:intergenic
ATAATACTCTCACTATACCT+TGG 0.539865 7_2:+65746319 Msa1069900:CDS
GTCAAGGAGGATCTATATCC+TGG 0.540168 7_2:+65748093 Msa1069900:CDS
ACAGGTGGAAGTTAGAGTAA+GGG 0.540261 7_2:+65748339 Msa1069900:intron
TTTAGGTTCTGAGTTAGGTG+TGG 0.540336 7_2:-65746385 None:intergenic
AGCAGTGCTGTTGGATTCAG+CGG 0.541017 7_2:+65748771 Msa1069900:CDS
ATAGAATAGCTTAATCTGTA+GGG 0.546836 7_2:+65748939 Msa1069900:three_prime_UTR
GACCCTTCCCTGTCGAGTCA+AGG 0.546957 7_2:+65748077 Msa1069900:CDS
GTGGAAGTTAGAGTAAGGGA+AGG 0.547671 7_2:+65748343 Msa1069900:CDS
ACGCTGTTTCAGAAGCGTCG+TGG 0.558156 7_2:+65746909 Msa1069900:CDS
CATTGCAATAGCTATTGCTA+TGG 0.561250 7_2:+65746422 Msa1069900:CDS
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 7_2:-65748422 None:intergenic
TTGGGGCTTAACAAGTCACC+AGG 0.570388 7_2:-65748111 None:intergenic
CCTCCTTGACTCGACAGGGA+AGG 0.571166 7_2:-65748080 None:intergenic
TGTTACTGGTGGAGATCAGA+AGG 0.571281 7_2:+65747106 Msa1069900:CDS
TGGAAGTTAGAGTAAGGGAA+GGG 0.572558 7_2:+65748344 Msa1069900:CDS
ACAGCAAGCTACAGCAGCTA+CGG 0.573063 7_2:-65748855 None:intergenic
GATGGTTGCAGCAATGAGCC+AGG 0.575197 7_2:-65748015 None:intergenic
TCTTAGCAGCAATGCCGAGA+AGG 0.577695 7_2:+65748721 Msa1069900:intron
GAGAGACACTACACAACACT+TGG 0.577753 7_2:+65746078 Msa1069900:five_prime_UTR
TGTGGTTGAGCTAGCTCAAG+AGG 0.578961 7_2:-65746837 None:intergenic
ATGAGAAAATTGTCTGGTAA+GGG 0.579342 7_2:-65746558 None:intergenic
CATTTGTTCATAGATGGACA+GGG 0.581639 7_2:+65747906 Msa1069900:intron
TGGGAAGAAGAAGGAAGTGG+TGG 0.581705 7_2:+65746996 Msa1069900:CDS
GTATTATGAACTTGTTGAGG+TGG 0.581897 7_2:-65746303 None:intergenic
TTGTTGTGAAAGAAAGAGTG+TGG 0.583509 7_2:-65746618 None:intergenic
TATTCTATCTGATCTTGGCC+TGG 0.585085 7_2:-65748924 None:intergenic
TAGCTTAATCTGTAGGGTGG+AGG 0.585513 7_2:+65748945 Msa1069900:three_prime_UTR
AATGGGACTGTTGTTACTGG+TGG 0.588156 7_2:+65747095 Msa1069900:CDS
TGTGTGTGAATAAAGGAAGA+GGG 0.589789 7_2:-65746129 None:intergenic
GTGAATAAAGGAAGAGGGAA+TGG 0.590695 7_2:-65746124 None:intergenic
GGGACCCACCCATGAAAACA+GGG 0.591270 7_2:-65746737 None:intergenic
TGAAAGCTTGCACTTGCAGA+TGG 0.592228 7_2:-65748033 None:intergenic
CAGAAGGGGAAGAAGAAGAA+GGG 0.596056 7_2:+65747122 Msa1069900:CDS
CTGTTGGAAACAAGAAGAAG+AGG 0.597578 7_2:+65746958 Msa1069900:CDS
TGATGGCTGAGAGGCGCCGG+AGG 0.599553 7_2:+65747162 Msa1069900:CDS
ATTTGTGTGAAGAATGATGA+AGG 0.611302 7_2:-65746192 None:intergenic
ACTTGAAAGAGCTGCTGCAG+CGG 0.611585 7_2:+65747956 Msa1069900:CDS
CAAAGAATTTGATGGCTGAG+AGG 0.613701 7_2:+65747153 Msa1069900:CDS
GAACTGGAATCAACTCCACC+TGG 0.616928 7_2:+65747997 Msa1069900:CDS
ATGGTAGATAGCAAAAGTCC+TGG 0.618329 7_2:-65748403 None:intergenic
ATAGAAAACGAAGCACTGAA+AGG 0.618637 7_2:-65746813 None:intergenic
ACTTCATTCAATTCAAACCA+TGG 0.624434 7_2:-65748798 None:intergenic
AGATCCTCCTTGACTCGACA+GGG 0.627926 7_2:-65748084 None:intergenic
AGAAGAGAAGAGAAGCAGCA+AGG 0.628506 7_2:+65746038 None:intergenic
GTTACTGGTGGAGATCAGAA+GGG 0.630933 7_2:+65747107 Msa1069900:CDS
ATTAGATGTGTTCAGAGCCG+AGG 0.631196 7_2:+65748492 Msa1069900:CDS
GAATAGCTTAATCTGTAGGG+TGG 0.631855 7_2:+65748942 Msa1069900:three_prime_UTR
TTGAATTTATGATTAAGTGG+TGG 0.634675 7_2:+65749023 Msa1069900:three_prime_UTR
GTGGGGCGTTGGAGATTCCG+AGG 0.636781 7_2:+65746928 Msa1069900:CDS
GAAAACGAAGCACTGAAAGG+TGG 0.640228 7_2:-65746810 None:intergenic
CCTGCTGAACATCCAATCCA+AGG 0.640256 7_2:-65748441 None:intergenic
TTAGGTGTGGACCATGAAGA+AGG 0.641283 7_2:-65746372 None:intergenic
TTGACTCGACAGGGAAGGGT+CGG 0.645022 7_2:-65748075 None:intergenic
TGGAAACAAGAAGAAGAGGA+AGG 0.647520 7_2:+65746962 Msa1069900:CDS
GCAGTGCTGTTGGATTCAGC+GGG 0.652187 7_2:+65748772 Msa1069900:CDS
TGTTGTGCCTAAGATTAGCA+AGG 0.656988 7_2:+65747220 Msa1069900:CDS
ACGCTTCTGAAACAGCGTAG+TGG 0.657092 7_2:-65746904 None:intergenic
GCACTGCTTTAATTTGCTCG+GGG 0.667619 7_2:-65748756 None:intergenic
GGACCCACCCATGAAAACAG+GGG 0.668460 7_2:-65746736 None:intergenic
TTACTGGTGGAGATCAGAAG+GGG 0.669179 7_2:+65747108 Msa1069900:CDS
GCTGTTTCAGAAGCGTCGTG+GGG 0.679817 7_2:+65746911 Msa1069900:CDS
CCTTCCCTGTCGAGTCAAGG+AGG 0.679867 7_2:+65748080 Msa1069900:CDS
AGAGTATTATGAACTTGTTG+AGG 0.689686 7_2:-65746306 None:intergenic
GCAGCATCGAGTTCAAGACT+CGG 0.694688 7_2:-65746780 None:intergenic
GGTTGCAGCAATGAGCCAGG+TGG 0.695323 7_2:-65748012 None:intergenic
GCATCGAGTTCAAGACTCGG+AGG 0.717250 7_2:-65746777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACAAAATATTGTGAAAT+TGG + chr7_2:65747258-65747277 Msa1069900:intron 15.0%
!!! TTTTTGAATATGTATTTTGT+TGG + chr7_2:65747615-65747634 Msa1069900:intron 15.0%
!!! TTTGAAAATGGATTCTTTAT+GGG + chr7_2:65746693-65746712 Msa1069900:CDS 20.0%
!! AATGATTTGAATAATTCCAA+TGG + chr7_2:65747077-65747096 Msa1069900:CDS 20.0%
!! ATGATTTGAATAATTCCAAT+GGG + chr7_2:65747078-65747097 Msa1069900:CDS 20.0%
!!! TTCAAAACGTTTTTTTTACA+AGG - chr7_2:65747286-65747305 None:intergenic 20.0%
!! TCAATAGCATTTCTAATTAT+AGG - chr7_2:65747488-65747507 None:intergenic 20.0%
!!! CAAAAAACATAACATTTTTG+TGG + chr7_2:65747536-65747555 Msa1069900:intron 20.0%
!! GATTTCTATTATTCAAATCA+AGG - chr7_2:65747566-65747585 None:intergenic 20.0%
!! TTGAATAATAGAAATCATGA+AGG + chr7_2:65747570-65747589 Msa1069900:intron 20.0%
!! TGAATAATAGAAATCATGAA+GGG + chr7_2:65747571-65747590 Msa1069900:intron 20.0%
!!! ATTAGTCACCAAAAATTTTA+AGG - chr7_2:65747752-65747771 None:intergenic 20.0%
!!! AAGTAAAACATGCTAATTTT+GGG + chr7_2:65747877-65747896 Msa1069900:intron 20.0%
!!! TATTTTCATTTGTTCATAGA+TGG + chr7_2:65747900-65747919 Msa1069900:intron 20.0%
!! CAAACAAAAATTATTACCTT+GGG - chr7_2:65748147-65748166 None:intergenic 20.0%
!! ATATAAGAAAGGTTTATGAT+TGG - chr7_2:65748559-65748578 None:intergenic 20.0%
!! TTGTTGAATTTATGATTAAG+TGG + chr7_2:65749020-65749039 Msa1069900:three_prime_UTR 20.0%
! TTTATCTTGTGTGTGAATAA+AGG - chr7_2:65746139-65746158 None:intergenic 25.0%
!! TGGATTTGAAATTGAATCTA+TGG - chr7_2:65746601-65746620 None:intergenic 25.0%
!! CTTTGAAAATGGATTCTTTA+TGG + chr7_2:65746692-65746711 Msa1069900:CDS 25.0%
! AATTATGATTCTGATGAGAA+TGG + chr7_2:65747053-65747072 Msa1069900:CDS 25.0%
!!! TCTATCAAGGTTTTAAATTG+CGG + chr7_2:65747317-65747336 Msa1069900:intron 25.0%
! ATTTCTAATTATAGGAGACA+GGG - chr7_2:65747461-65747480 None:intergenic 25.0%
! TAGGAGACATTTCTAATTAT+AGG - chr7_2:65747469-65747488 None:intergenic 25.0%
! TTGATCAACAAAATACACAT+TGG + chr7_2:65747680-65747699 Msa1069900:intron 25.0%
!! TACTCAAGAACTAATTTTAC+TGG + chr7_2:65747726-65747745 Msa1069900:intron 25.0%
!!! TTTACTGGCCTTAAAATTTT+TGG + chr7_2:65747741-65747760 Msa1069900:intron 25.0%
!! AATCTTGTTGCTTATGTTAA+TGG + chr7_2:65747814-65747833 Msa1069900:intron 25.0%
!!! AGTTTTTAATTACCACACAA+AGG - chr7_2:65747853-65747872 None:intergenic 25.0%
! TGTGTGGTAATTAAAAACTT+AGG + chr7_2:65747854-65747873 Msa1069900:intron 25.0%
!! GAAGTAAAACATGCTAATTT+TGG + chr7_2:65747876-65747895 Msa1069900:intron 25.0%
! GCAAACAAAAATTATTACCT+TGG - chr7_2:65748148-65748167 None:intergenic 25.0%
! TTTCATATTGACAAGTAACA+TGG + chr7_2:65748239-65748258 Msa1069900:intron 25.0%
!!! TTCTTGTTTCTGAAATTTAC+AGG + chr7_2:65748321-65748340 Msa1069900:intron 25.0%
! ACAAAACATATGAATGTTGA+CGG - chr7_2:65748374-65748393 None:intergenic 25.0%
! ATCACGGTAAAATATAAGAA+AGG - chr7_2:65748570-65748589 None:intergenic 25.0%
!!! ATTTCGAGTTCACTAATTAT+TGG + chr7_2:65748653-65748672 Msa1069900:intron 25.0%
! ATAGAATAGCTTAATCTGTA+GGG + chr7_2:65748939-65748958 Msa1069900:three_prime_UTR 25.0%
! TTGAATTTATGATTAAGTGG+TGG + chr7_2:65749023-65749042 Msa1069900:three_prime_UTR 25.0%
AATGATGAAGGAGAGAAAAA+GGG - chr7_2:65746183-65746202 None:intergenic 30.0%
ATTTGTGTGAAGAATGATGA+AGG - chr7_2:65746195-65746214 None:intergenic 30.0%
! AAAAAGAGAAAAGTGTGAAG+AGG - chr7_2:65746247-65746266 None:intergenic 30.0%
!! AGAGTATTATGAACTTGTTG+AGG - chr7_2:65746309-65746328 None:intergenic 30.0%
ATAATACTCTCACTATACCT+TGG + chr7_2:65746319-65746338 Msa1069900:CDS 30.0%
! TTGTTGTTGTTGTTGTTATC+AGG - chr7_2:65746492-65746511 None:intergenic 30.0%
ATGAGAAAATTGTCTGGTAA+GGG - chr7_2:65746561-65746580 None:intergenic 30.0%
! AATCTATGGTGTTTGTGTTT+TGG - chr7_2:65746587-65746606 None:intergenic 30.0%
TTTCAAAGCCCATTTCAAAT+GGG - chr7_2:65746680-65746699 None:intergenic 30.0%
! TTTTCAAAGCCCATTTCAAA+TGG - chr7_2:65746681-65746700 None:intergenic 30.0%
!! TTTGAAATGGGCTTTGAAAA+TGG + chr7_2:65746681-65746700 Msa1069900:CDS 30.0%
! AAGCATATTAGCTTCTATCA+AGG + chr7_2:65747304-65747323 Msa1069900:intron 30.0%
CATTTCTAATTATAGGAGAC+AGG - chr7_2:65747462-65747481 None:intergenic 30.0%
TAATAATCTTCACAACGAAC+TGG + chr7_2:65747981-65748000 Msa1069900:CDS 30.0%
CTTACAACAAATTTGTGCAA+TGG - chr7_2:65748170-65748189 None:intergenic 30.0%
TTGTAAGATATGTCAGATTG+CGG + chr7_2:65748183-65748202 Msa1069900:intron 30.0%
ATTGATGCAAATCATTTGCA+TGG + chr7_2:65748275-65748294 Msa1069900:intron 30.0%
AATCATTTGCATGGTAATTG+AGG + chr7_2:65748284-65748303 Msa1069900:intron 30.0%
!! TTGTTTCTGAAATTTACAGG+TGG + chr7_2:65748324-65748343 Msa1069900:intron 30.0%
! GATGTTTATATGCCTCTTTT+AGG + chr7_2:65748600-65748619 Msa1069900:intron 30.0%
CACAAAAAACAACCTAAAAG+AGG - chr7_2:65748615-65748634 None:intergenic 30.0%
! ATTTCTACCATTTGAAGTTC+TGG + chr7_2:65748676-65748695 Msa1069900:intron 30.0%
ACTTCATTCAATTCAAACCA+TGG - chr7_2:65748801-65748820 None:intergenic 30.0%
!!! TATAAGGGTAGCATTTTTTC+AGG - chr7_2:65748825-65748844 None:intergenic 30.0%
AAAAAATGCTACCCTTATAG+AGG + chr7_2:65748826-65748845 Msa1069900:three_prime_UTR 30.0%
TAAGCTATTCTATCTGATCT+TGG - chr7_2:65748932-65748951 None:intergenic 30.0%
GATAGAATAGCTTAATCTGT+AGG + chr7_2:65748938-65748957 Msa1069900:three_prime_UTR 30.0%
! TCGTATACTTTTCTCAATTG+TGG + chr7_2:65748975-65748994 Msa1069900:three_prime_UTR 30.0%
TGTGTGTGAATAAAGGAAGA+GGG - chr7_2:65746132-65746151 None:intergenic 35.0%
TTGTGTGTGAATAAAGGAAG+AGG - chr7_2:65746133-65746152 None:intergenic 35.0%
GAATGATGAAGGAGAGAAAA+AGG - chr7_2:65746184-65746203 None:intergenic 35.0%
!!! TCTTTTTTGTCTCTCTGTCA+TGG + chr7_2:65746260-65746279 Msa1069900:exon 35.0%
!! GTATTATGAACTTGTTGAGG+TGG - chr7_2:65746306-65746325 None:intergenic 35.0%
!! GATTCTTGTTGTTGTTGTTG+TGG - chr7_2:65746351-65746370 None:intergenic 35.0%
AACAAGAATCACCTTCTTCA+TGG + chr7_2:65746361-65746380 Msa1069900:CDS 35.0%
CATTGCAATAGCTATTGCTA+TGG + chr7_2:65746422-65746441 Msa1069900:CDS 35.0%
! TTGTTGTTGTTATCAGGTTC+GGG - chr7_2:65746486-65746505 None:intergenic 35.0%
! GTTGTTGTTGTTATCAGGTT+CGG - chr7_2:65746487-65746506 None:intergenic 35.0%
CATGAGAAAATTGTCTGGTA+AGG - chr7_2:65746562-65746581 None:intergenic 35.0%
TTGTTGTGAAAGAAAGAGTG+TGG - chr7_2:65746621-65746640 None:intergenic 35.0%
TACCAACAACCCATTTGAAA+TGG + chr7_2:65746668-65746687 Msa1069900:CDS 35.0%
! ACCAACAACCCATTTGAAAT+GGG + chr7_2:65746669-65746688 Msa1069900:CDS 35.0%
!! ATAGAAAACGAAGCACTGAA+AGG - chr7_2:65746816-65746835 None:intergenic 35.0%
ACTTCCTGCAAAGAATTTGA+TGG + chr7_2:65747145-65747164 Msa1069900:CDS 35.0%
TATCATTGAGTTTCTTCCTC+CGG - chr7_2:65747181-65747200 None:intergenic 35.0%
ATGATAGGTTGTACATGCTT+AGG + chr7_2:65747195-65747214 Msa1069900:CDS 35.0%
TTCCATACCTTGCTAATCTT+AGG - chr7_2:65747230-65747249 None:intergenic 35.0%
! TTTTTATGTGACCGCGATTA+TGG - chr7_2:65747406-65747425 None:intergenic 35.0%
TCCAAACAAAAGCAACAAGA+TGG - chr7_2:65747793-65747812 None:intergenic 35.0%
TCATTTGTTCATAGATGGAC+AGG + chr7_2:65747905-65747924 Msa1069900:intron 35.0%
CATTTGTTCATAGATGGACA+GGG + chr7_2:65747906-65747925 Msa1069900:intron 35.0%
!! ACCTTGGGAGATTGATTTTT+GGG - chr7_2:65748132-65748151 None:intergenic 35.0%
!! TACCTTGGGAGATTGATTTT+TGG - chr7_2:65748133-65748152 None:intergenic 35.0%
!! ACTTTTGCTATCTACCATGA+GGG + chr7_2:65748408-65748427 Msa1069900:CDS 35.0%
! GCTGTTATCAGTTGTTTCAA+TGG + chr7_2:65748463-65748482 Msa1069900:CDS 35.0%
TGGAGAAAGAACTAATACCT+CGG - chr7_2:65748512-65748531 None:intergenic 35.0%
AACATCAATTGCAAGCATCA+CGG - chr7_2:65748586-65748605 None:intergenic 35.0%
ATCAACACCAGAACTTCAAA+TGG - chr7_2:65748686-65748705 None:intergenic 35.0%
TACGGTTAGTACCTCTATAA+GGG - chr7_2:65748840-65748859 None:intergenic 35.0%
CTTCTTGTTCCTGTTAGTAA+AGG + chr7_2:65748892-65748911 Msa1069900:three_prime_UTR 35.0%
GTGAATAAAGGAAGAGGGAA+TGG - chr7_2:65746127-65746146 None:intergenic 40.0%
!! TGAACTTGTTGAGGTGGTAA+GGG - chr7_2:65746300-65746319 None:intergenic 40.0%
!! ATGAACTTGTTGAGGTGGTA+AGG - chr7_2:65746301-65746320 None:intergenic 40.0%
!! TTTAGGTTCTGAGTTAGGTG+TGG - chr7_2:65746388-65746407 None:intergenic 40.0%
!! TGGTGTTTAGGTTCTGAGTT+AGG - chr7_2:65746393-65746412 None:intergenic 40.0%
! ATGTCTTGTTCGTGGTGTTT+AGG - chr7_2:65746405-65746424 None:intergenic 40.0%
! CTATTGCAATGTCTTGTTCG+TGG - chr7_2:65746413-65746432 None:intergenic 40.0%
TGGTGCATGAGAAAATTGTC+TGG - chr7_2:65746567-65746586 None:intergenic 40.0%
! TTCAACTTCCCCTGTTTTCA+TGG + chr7_2:65746728-65746747 Msa1069900:CDS 40.0%
! TCAACTTCCCCTGTTTTCAT+GGG + chr7_2:65746729-65746748 Msa1069900:CDS 40.0%
AGGAAACTCAGAAGCTGAAA+GGG - chr7_2:65746760-65746779 None:intergenic 40.0%
! TGATGATGTTGTTGTGGTTG+TGG - chr7_2:65746858-65746877 None:intergenic 40.0%
! TGCTGATGATGATGTTGTTG+TGG - chr7_2:65746864-65746883 None:intergenic 40.0%
CTGTTGGAAACAAGAAGAAG+AGG + chr7_2:65746958-65746977 Msa1069900:CDS 40.0%
TGGAAACAAGAAGAAGAGGA+AGG + chr7_2:65746962-65746981 Msa1069900:CDS 40.0%
TCAGCCATCAAATTCTTTGC+AGG - chr7_2:65747152-65747171 None:intergenic 40.0%
! CAAAGAATTTGATGGCTGAG+AGG + chr7_2:65747153-65747172 Msa1069900:CDS 40.0%
GGAGGAAGAAACTCAATGAT+AGG + chr7_2:65747180-65747199 Msa1069900:CDS 40.0%
TGTTGTGCCTAAGATTAGCA+AGG + chr7_2:65747220-65747239 Msa1069900:CDS 40.0%
TGCCTAAGATTAGCAAGGTA+TGG + chr7_2:65747225-65747244 Msa1069900:intron 40.0%
GTCTTCACACAAGCATTTCA+AGG - chr7_2:65747651-65747670 None:intergenic 40.0%
!!! GCCATCTTGTTGCTTTTGTT+TGG + chr7_2:65747789-65747808 Msa1069900:intron 40.0%
!! CCTTGGGAGATTGATTTTTG+GGG - chr7_2:65748131-65748150 None:intergenic 40.0%
TACAGGTGGAAGTTAGAGTA+AGG + chr7_2:65748338-65748357 Msa1069900:intron 40.0%
ACAGGTGGAAGTTAGAGTAA+GGG + chr7_2:65748339-65748358 Msa1069900:intron 40.0%
TGGAAGTTAGAGTAAGGGAA+GGG + chr7_2:65748344-65748363 Msa1069900:CDS 40.0%
ATGGTAGATAGCAAAAGTCC+TGG - chr7_2:65748406-65748425 None:intergenic 40.0%
!! GACTTTTGCTATCTACCATG+AGG + chr7_2:65748407-65748426 Msa1069900:CDS 40.0%
GGATATGTTTGAGTGAAGCT+TGG - chr7_2:65748538-65748557 None:intergenic 40.0%
!! AGCACTGCTTTAATTTGCTC+GGG - chr7_2:65748760-65748779 None:intergenic 40.0%
!! CAGCACTGCTTTAATTTGCT+CGG - chr7_2:65748761-65748780 None:intergenic 40.0%
GCAAATTAAAGCAGTGCTGT+TGG + chr7_2:65748762-65748781 Msa1069900:CDS 40.0%
CTACGGTTAGTACCTCTATA+AGG - chr7_2:65748841-65748860 None:intergenic 40.0%
AGACACAGACCTTTACTAAC+AGG - chr7_2:65748904-65748923 None:intergenic 40.0%
TATTCTATCTGATCTTGGCC+TGG - chr7_2:65748927-65748946 None:intergenic 40.0%
GAATAGCTTAATCTGTAGGG+TGG + chr7_2:65748942-65748961 Msa1069900:three_prime_UTR 40.0%
GAGAGACACTACACAACACT+TGG + chr7_2:65746078-65746097 Msa1069900:five_prime_UTR 45.0%
ATAAAGGAAGAGGGAATGGC+TGG - chr7_2:65746123-65746142 None:intergenic 45.0%
TGTTGTTGTGGTTCAGTCCA+AGG - chr7_2:65746339-65746358 None:intergenic 45.0%
TTAGGTGTGGACCATGAAGA+AGG - chr7_2:65746375-65746394 None:intergenic 45.0%
GCAATAGCTATTGCTATGGC+TGG + chr7_2:65746426-65746445 Msa1069900:CDS 45.0%
! GTGGTTCGGGTTTGAAGAAA+GGG - chr7_2:65746461-65746480 None:intergenic 45.0%
! TGTGGTTCGGGTTTGAAGAA+AGG - chr7_2:65746462-65746481 None:intergenic 45.0%
!! TTGTTATCAGGTTCGGGTTG+TGG - chr7_2:65746480-65746499 None:intergenic 45.0%
!! GCCCATTTCAAATGGGTTGT+TGG - chr7_2:65746673-65746692 None:intergenic 45.0%
GAGGAAACTCAGAAGCTGAA+AGG - chr7_2:65746761-65746780 None:intergenic 45.0%
!! GAAAACGAAGCACTGAAAGG+TGG - chr7_2:65746813-65746832 None:intergenic 45.0%
TTTCCAACAGTCTCCAACCT+CGG - chr7_2:65746948-65746967 None:intergenic 45.0%
AGAGGAAGGTTGAGAAGAGT+TGG + chr7_2:65746976-65746995 Msa1069900:CDS 45.0%
GAGGAAGGTTGAGAAGAGTT+GGG + chr7_2:65746977-65746996 Msa1069900:CDS 45.0%
GAGAAGAGTTGGGAAGAAGA+AGG + chr7_2:65746987-65747006 Msa1069900:CDS 45.0%
AGTTGGGAAGAAGAAGGAAG+TGG + chr7_2:65746993-65747012 Msa1069900:CDS 45.0%
TCCAATGGGACTGTTGTTAC+TGG + chr7_2:65747092-65747111 Msa1069900:CDS 45.0%
ACCAGTAACAACAGTCCCAT+TGG - chr7_2:65747096-65747115 None:intergenic 45.0%
AATGGGACTGTTGTTACTGG+TGG + chr7_2:65747095-65747114 Msa1069900:CDS 45.0%
TGTTACTGGTGGAGATCAGA+AGG + chr7_2:65747106-65747125 Msa1069900:CDS 45.0%
GTTACTGGTGGAGATCAGAA+GGG + chr7_2:65747107-65747126 Msa1069900:CDS 45.0%
TTACTGGTGGAGATCAGAAG+GGG + chr7_2:65747108-65747127 Msa1069900:CDS 45.0%
TCAGAAGGGGAAGAAGAAGA+AGG + chr7_2:65747121-65747140 Msa1069900:CDS 45.0%
CAGAAGGGGAAGAAGAAGAA+GGG + chr7_2:65747122-65747141 Msa1069900:CDS 45.0%
TGCTGATGTAGCCATAATCG+CGG + chr7_2:65747392-65747411 Msa1069900:intron 45.0%
AGCGTTGCATTTCCTTTGTG+TGG + chr7_2:65747838-65747857 Msa1069900:intron 45.0%
ATGGACAGGGCTTCAATACT+CGG + chr7_2:65747919-65747938 Msa1069900:CDS 45.0%
TGAAAGCTTGCACTTGCAGA+TGG - chr7_2:65748036-65748055 None:intergenic 45.0%
GTCAAGGAGGATCTATATCC+TGG + chr7_2:65748093-65748112 Msa1069900:CDS 45.0%
CCCCAAAAATCAATCTCCCA+AGG + chr7_2:65748128-65748147 Msa1069900:CDS 45.0%
GTGGAAGTTAGAGTAAGGGA+AGG + chr7_2:65748343-65748362 Msa1069900:CDS 45.0%
! ATGTTTTGTACTCGCAGACC+AGG + chr7_2:65748385-65748404 Msa1069900:CDS 45.0%
AAGGTTATCCAAAGCCCTCA+TGG - chr7_2:65748425-65748444 None:intergenic 45.0%
!! ATGAGGGCTTTGGATAACCT+TGG + chr7_2:65748424-65748443 Msa1069900:CDS 45.0%
!! GGCTTTGGATAACCTTGGAT+TGG + chr7_2:65748429-65748448 Msa1069900:CDS 45.0%
ATTAGATGTGTTCAGAGCCG+AGG + chr7_2:65748492-65748511 Msa1069900:CDS 45.0%
GTTTGAGTGAAGCTTGGAAC+TGG - chr7_2:65748532-65748551 None:intergenic 45.0%
!! GCACTGCTTTAATTTGCTCG+GGG - chr7_2:65748759-65748778 None:intergenic 45.0%
TAGTAAAGGTCTGTGTCTCC+AGG + chr7_2:65748906-65748925 Msa1069900:three_prime_UTR 45.0%
TAGCTTAATCTGTAGGGTGG+AGG + chr7_2:65748945-65748964 Msa1069900:three_prime_UTR 45.0%
! AATGGCTGGTTGAGTGAGTG+AGG - chr7_2:65746109-65746128 None:intergenic 50.0%
!! ATCAGGTTCGGGTTGTGGTT+CGG - chr7_2:65746475-65746494 None:intergenic 50.0%
! ACTTCCCCTGTTTTCATGGG+TGG + chr7_2:65746732-65746751 Msa1069900:CDS 50.0%
! CTTCCCCTGTTTTCATGGGT+GGG + chr7_2:65746733-65746752 Msa1069900:CDS 50.0%
! GCAGCATCGAGTTCAAGACT+CGG - chr7_2:65746783-65746802 None:intergenic 50.0%
!! GAAGCACTGAAAGGTGGTAC+TGG - chr7_2:65746807-65746826 None:intergenic 50.0%
TGTGGTTGAGCTAGCTCAAG+AGG - chr7_2:65746840-65746859 None:intergenic 50.0%
!! CGCTTCTGAAACAGCGTAGT+GGG - chr7_2:65746906-65746925 None:intergenic 50.0%
!! ACGCTTCTGAAACAGCGTAG+TGG - chr7_2:65746907-65746926 None:intergenic 50.0%
ATTCCGAGGTTGGAGACTGT+TGG + chr7_2:65746942-65746961 Msa1069900:CDS 50.0%
TGGGAAGAAGAAGGAAGTGG+TGG + chr7_2:65746996-65747015 Msa1069900:CDS 50.0%
GAAGAAGAAGGAAGTGGTGG+TGG + chr7_2:65746999-65747018 Msa1069900:CDS 50.0%
ACTTGAAAGAGCTGCTGCAG+CGG + chr7_2:65747956-65747975 Msa1069900:CDS 50.0%
GAACTGGAATCAACTCCACC+TGG + chr7_2:65747997-65748016 Msa1069900:CDS 50.0%
! AGATCCTCCTTGACTCGACA+GGG - chr7_2:65748087-65748106 None:intergenic 50.0%
! TAGATCCTCCTTGACTCGAC+AGG - chr7_2:65748088-65748107 None:intergenic 50.0%
TTGGGGCTTAACAAGTCACC+AGG - chr7_2:65748114-65748133 None:intergenic 50.0%
GCTATCTACCATGAGGGCTT+TGG + chr7_2:65748414-65748433 Msa1069900:CDS 50.0%
CCTGCTGAACATCCAATCCA+AGG - chr7_2:65748444-65748463 None:intergenic 50.0%
! CCTTGGATTGGATGTTCAGC+AGG + chr7_2:65748441-65748460 Msa1069900:CDS 50.0%
TCTTAGCAGCAATGCCGAGA+AGG + chr7_2:65748721-65748740 Msa1069900:intron 50.0%
! AGCAGTGCTGTTGGATTCAG+CGG + chr7_2:65748771-65748790 Msa1069900:CDS 50.0%
ACAGCAAGCTACAGCAGCTA+CGG - chr7_2:65748858-65748877 None:intergenic 50.0%
ATCTGTAGGGTGGAGGAGAT+AGG + chr7_2:65748952-65748971 Msa1069900:three_prime_UTR 50.0%
!! TCAGGTTCGGGTTGTGGTTC+GGG - chr7_2:65746474-65746493 None:intergenic 55.0%
GGACCCACCCATGAAAACAG+GGG - chr7_2:65746739-65746758 None:intergenic 55.0%
GGGACCCACCCATGAAAACA+GGG - chr7_2:65746740-65746759 None:intergenic 55.0%
AGGGACCCACCCATGAAAAC+AGG - chr7_2:65746741-65746760 None:intergenic 55.0%
GCATCGAGTTCAAGACTCGG+AGG - chr7_2:65746780-65746799 None:intergenic 55.0%
!! ACGCTGTTTCAGAAGCGTCG+TGG + chr7_2:65746909-65746928 Msa1069900:CDS 55.0%
!! CGCTGTTTCAGAAGCGTCGT+GGG + chr7_2:65746910-65746929 Msa1069900:CDS 55.0%
!! GCTGTTTCAGAAGCGTCGTG+GGG + chr7_2:65746911-65746930 Msa1069900:CDS 55.0%
!! GAAGAAGGAAGTGGTGGTGG+TGG + chr7_2:65747002-65747021 Msa1069900:CDS 55.0%
! ATTTGATGGCTGAGAGGCGC+CGG + chr7_2:65747159-65747178 Msa1069900:CDS 55.0%
GATGGTTGCAGCAATGAGCC+AGG - chr7_2:65748018-65748037 None:intergenic 55.0%
! TTGACTCGACAGGGAAGGGT+CGG - chr7_2:65748078-65748097 None:intergenic 55.0%
! CTCCTTGACTCGACAGGGAA+GGG - chr7_2:65748082-65748101 None:intergenic 55.0%
! GGAGTACATCCTGGCCTTCT+CGG - chr7_2:65748738-65748757 None:intergenic 55.0%
! TTTGCTCGGGGAGTACATCC+TGG - chr7_2:65748747-65748766 None:intergenic 55.0%
! GCAGTGCTGTTGGATTCAGC+GGG + chr7_2:65748772-65748791 Msa1069900:CDS 55.0%
!! TTGGATTCAGCGGGCTACCA+TGG + chr7_2:65748781-65748800 Msa1069900:CDS 55.0%
! GGCGTTGGAGATTCCGAGGT+TGG + chr7_2:65746932-65746951 Msa1069900:CDS 60.0%
GGTTGCAGCAATGAGCCAGG+TGG - chr7_2:65748015-65748034 None:intergenic 60.0%
!! TCGGCGGAGTTGGTGTCAAC+GGG - chr7_2:65748059-65748078 None:intergenic 60.0%
!! GTCGGCGGAGTTGGTGTCAA+CGG - chr7_2:65748060-65748079 None:intergenic 60.0%
GACCCTTCCCTGTCGAGTCA+AGG + chr7_2:65748077-65748096 Msa1069900:CDS 60.0%
! CCTCCTTGACTCGACAGGGA+AGG - chr7_2:65748083-65748102 None:intergenic 60.0%
CCTTCCCTGTCGAGTCAAGG+AGG + chr7_2:65748080-65748099 Msa1069900:CDS 60.0%
!! TCAGAAGCGTCGTGGGGCGT+TGG + chr7_2:65746917-65746936 Msa1069900:CDS 65.0%
!! GTGGGGCGTTGGAGATTCCG+AGG + chr7_2:65746928-65746947 Msa1069900:CDS 65.0%
ACTCGACAGGGAAGGGTCGG+CGG - chr7_2:65748075-65748094 None:intergenic 65.0%
GCAGCAATGCCGAGAAGGCC+AGG + chr7_2:65748726-65748745 Msa1069900:intron 65.0%
!! TGATGGCTGAGAGGCGCCGG+AGG + chr7_2:65747162-65747181 Msa1069900:CDS 70.0%
CAGGGAAGGGTCGGCGGAGT+TGG - chr7_2:65748069-65748088 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 65746047 65749077 65746047 ID=Msa1069900;Name=Msa1069900
chr7_2 mRNA 65746047 65749077 65746047 ID=Msa1069900-mRNA-1;Parent=Msa1069900;Name=Msa1069900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=209|0.75|0.8|1|0.75|0.6|5|264|482
chr7_2 exon 65746047 65746100 65746047 ID=Msa1069900-mRNA-1:exon:13860;Parent=Msa1069900-mRNA-1
chr7_2 exon 65746124 65747241 65746124 ID=Msa1069900-mRNA-1:exon:13861;Parent=Msa1069900-mRNA-1
chr7_2 exon 65747919 65748149 65747919 ID=Msa1069900-mRNA-1:exon:13862;Parent=Msa1069900-mRNA-1
chr7_2 exon 65748343 65748513 65748343 ID=Msa1069900-mRNA-1:exon:13863;Parent=Msa1069900-mRNA-1
chr7_2 exon 65748730 65749077 65748730 ID=Msa1069900-mRNA-1:exon:13864;Parent=Msa1069900-mRNA-1
chr7_2 five_prime_UTR 65746047 65746100 65746047 ID=Msa1069900-mRNA-1:five_prime_utr;Parent=Msa1069900-mRNA-1
chr7_2 five_prime_UTR 65746124 65746278 65746124 ID=Msa1069900-mRNA-1:five_prime_utr;Parent=Msa1069900-mRNA-1
chr7_2 CDS 65746279 65747241 65746279 ID=Msa1069900-mRNA-1:cds;Parent=Msa1069900-mRNA-1
chr7_2 CDS 65747919 65748149 65747919 ID=Msa1069900-mRNA-1:cds;Parent=Msa1069900-mRNA-1
chr7_2 CDS 65748343 65748513 65748343 ID=Msa1069900-mRNA-1:cds;Parent=Msa1069900-mRNA-1
chr7_2 CDS 65748730 65748813 65748730 ID=Msa1069900-mRNA-1:cds;Parent=Msa1069900-mRNA-1
chr7_2 three_prime_UTR 65748814 65749077 65748814 ID=Msa1069900-mRNA-1:three_prime_utr;Parent=Msa1069900-mRNA-1
Gene Sequence

>Msa1069900

ATGGAGAGATACACGTTACCCTTACCACCTCAACAAGTTCATAATACTCTCACTATACCTTGGACTGAACCACAACAACAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCAGAACCTAAACACCACGAACAAGACATTGCAATAGCTATTGCTATGGCTGGTTCTTCTATCCCTTTCTTCAAACCCGAACCACAACCCGAACCTGATAACAACAACAACAACAACAACTTCTACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAACAACCCATTTGAAATGGGCTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAACTTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCAGCAACAACAACAACAACAACAACCCACTACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACTGTTGGAAACAAGAAGAAGAGGAAGGTTGAGAAGAGTTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGAAATGATTTGAATAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGACTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCTAAGATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAAGAGCTGCTGCAGCGGATTAATAATCTTCACAACGAACTGGAATCAACTCCACCTGGCTCATTGCTGCAACCATCTGCAAGTGCAAGCTTTCACCCGTTGACACCAACTCCGCCGACCCTTCCCTGTCGAGTCAAGGAGGATCTATATCCTGGTGACTTGTTAAGCCCCAAAAATCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGATGTGTTCAGAGCCGAGCAATGCCGAGAAGGCCAGGATGTACTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA
Protein sequence

>Msa1069900

MERYTLPLPPQQVHNTLTIPWTEPQQQQQESPSSWSTPNSEPKHHEQDIAIAIAMAGSSIPFFKPEPQPEPDNNNNNNNFYNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSTSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHQQQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN*