AlfalfaGEDB | Msa1291140

M. sativa cultivar zhongmu-4 / Msa1291140

KEGG: K18980
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009941 GO:0010319 GO:0016491 GO:0016627 GO:0016628 GO:0031967 GO:0031975 GO:0035671 GO:0035798 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0055114
PFAM: PF13602.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291140	XP_013445984.1	91.667	384	12	2	1	364	1	384	0.0	693

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291140	sp\|Q9ZUC1\|AOR_ARATH	75.719	313	56	2	72	364	74	386	6.59e-169	479

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291140	A0A072TS46	91.667	384	12	2	1	364	1	384	0.0	693

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1291140	0.826079	3.301936e-54	-8.615850e-47
Msa0000220	Msa1291140	0.849435	3.239112e-60	-8.615850e-47
Msa0000500	Msa1291140	0.804599	1.999898e-49	-8.615850e-47
Msa0005160	Msa1291140	0.823160	1.608363e-53	-8.615850e-47
Msa0005690	Msa1291140	0.816536	5.257970e-52	-8.615850e-47
Msa0008330	Msa1291140	0.827232	1.752437e-54	-8.615850e-47
Msa0009800	Msa1291140	0.802992	4.312565e-49	-8.615850e-47
Msa0009890	Msa1291140	0.805832	1.103301e-49	-8.615850e-47
Msa0012460	Msa1291140	0.822981	1.770981e-53	-8.615850e-47
Msa0014790	Msa1291140	0.801346	9.403503e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291140	MtrunA17_Chr8g0365421	91.667	384	12	2	1	364	1	384	0.0	693
Msa1291140	MtrunA17_Chr7g0228011	67.742	310	79	3	76	364	8	317	4.88e-137	392
Msa1291140	MtrunA17_Chr6g0453201	62.739	314	96	3	72	364	7	320	1.49e-126	366
Msa1291140	MtrunA17_Chr6g0466321	58.917	314	108	3	72	364	15	328	2.22e-119	348
Msa1291140	MtrunA17_Chr6g0465501	58.599	314	109	3	72	364	15	328	4.26e-119	347
Msa1291140	MtrunA17_Chr6g0453191	62.021	287	88	3	72	337	7	293	3.34e-110	324
Msa1291140	MtrunA17_Chr8g0351271	42.812	313	148	7	77	363	5	312	6.69e-75	235
Msa1291140	MtrunA17_Chr8g0351481	42.857	308	147	6	77	360	5	307	4.13e-74	233
Msa1291140	MtrunA17_Chr4g0014691	32.941	340	159	14	76	362	6	329	1.22e-28	114
Msa1291140	MtrunA17_Chr4g0014541	32.941	340	159	14	76	362	6	329	1.74e-28	113

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291140	AT1G23740.1	75.719	313	56	2	72	364	74	386	6.70e-170	479
Msa1291140	AT4G13010.1	31.157	337	169	11	76	362	6	329	2.42e-22	96.7
Msa1291140	AT3G15090.1	28.571	245	146	8	77	297	33	272	5.11e-19	87.8

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Find 83 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCAACGTTAAAACG+TGG	0.713375	8_3:+46455580	None:intergenic
AAAGTGGGCGATGAAGTATA+TGG	0.534553	8_3:+46456731	Msa1291140:CDS
AAATCTATTCTTGTTCTCAA+TGG	0.403553	8_3:+46456938	Msa1291140:CDS
AACAAACAAAGCTACTGGAA+AGG	0.637522	8_3:+46457894	Msa1291140:CDS
AACATCAGGTACAACAACAT+TGG	0.569750	8_3:-46455939	None:intergenic
AAGAAGGCAGGGAAAGTTTA+AGG	0.274790	8_3:+46456021	Msa1291140:CDS
AAGCCAATTATAGATCCCAA+AGG	0.697488	8_3:+46457826	Msa1291140:CDS
AAGGAAAATCTGAGTGAAAG+TGG	0.572827	8_3:-46455719	None:intergenic
AATGGTGAGGTGAGAAGTTG+TGG	0.574018	8_3:-46455672	None:intergenic
ACAAGTTCCTTCCGAAATGA+AGG	0.458472	8_3:+46455868	Msa1291140:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTGATCTTCTTTAACATC+AGG	-	chr8_3:46455956-46455975	None:intergenic	30.0%
TGAGCAAAGTCTAAATTTGT+AGG	-	chr8_3:46456848-46456867	None:intergenic	30.0%
AGAACAAGAATAGATTTACC+AGG	-	chr8_3:46456935-46456954	None:intergenic	30.0%
CTACAATATTTCAGCATGAA+AGG	-	chr8_3:46457016-46457035	None:intergenic	30.0%
AAATATTGTAGCAATGACAC+CGG	+	chr8_3:46457025-46457044	Msa1291140:intron	30.0%
ATGATATTGACACATTGTGT+TGG	-	chr8_3:46457099-46457118	None:intergenic	30.0%
AAAGTTCTTAGTCAGGTAAA+GGG	-	chr8_3:46457175-46457194	None:intergenic	30.0%
AAAAGTTCTTAGTCAGGTAA+AGG	-	chr8_3:46457176-46457195	None:intergenic	30.0%
GATGTAGTTTATGATGTCAT+TGG	+	chr8_3:46457434-46457453	Msa1291140:CDS	30.0%
TGAAAGTTTGTATGGAAGAT+TGG	-	chr8_3:46457495-46457514	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	46455594	46458121	46455594	ID=Msa1291140;Name=Msa1291140
chr8_3	mRNA	46455594	46458121	46455594	ID=Msa1291140-mRNA-1;Parent=Msa1291140;Name=Msa1291140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65\|0.33\|0.75\|1\|0.66\|0.75\|4\|182\|364
chr8_3	exon	46455594	46456063	46455594	ID=Msa1291140-mRNA-1:exon:12844;Parent=Msa1291140-mRNA-1
chr8_3	exon	46456707	46456970	46456707	ID=Msa1291140-mRNA-1:exon:12845;Parent=Msa1291140-mRNA-1
chr8_3	exon	46457296	46457455	46457296	ID=Msa1291140-mRNA-1:exon:12846;Parent=Msa1291140-mRNA-1
chr8_3	exon	46457674	46458121	46457674	ID=Msa1291140-mRNA-1:exon:12847;Parent=Msa1291140-mRNA-1
chr8_3	five_prime_UTR	46455594	46455658	46455594	ID=Msa1291140-mRNA-1:five_prime_utr;Parent=Msa1291140-mRNA-1
chr8_3	CDS	46455659	46456063	46455659	ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3	CDS	46456707	46456970	46456707	ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3	CDS	46457296	46457455	46457296	ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3	CDS	46457674	46457939	46457674	ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3	three_prime_UTR	46457940	46458121	46457940	ID=Msa1291140-mRNA-1:three_prime_utr;Parent=Msa1291140-mRNA-1

Gene Sequence

>Msa1291140

ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTTCCTTCACTTCCTTCAACTTCACCACTTTCACTCAGATTTTCCTTCACTTTCCAACCAAAAACTAACCAAAAAACTTGTCACACAACACTCTTGTCTTCTTCATCAAGGCATGCTAGATTCTTGGTGAAGTCTCAATCTACTACTGCTTCTTCTGAGGCTGTGAAAGTGACACAAGTTCCTTCCGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTTTTGAAATTTGACTCCAATGTTGTTGTACCTGATGTTAAAGAAGATCAAGTTCTTGTTAAAGTTGTTGCTGCGGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACGGATTCTCCTCTTCCGGTTGGTAGTGAAGTAAAGGAGTTCAAAGTGGGCGATGAAGTATATGGTGATGTAAATGAGAAAGCATTAGAAGGCCCTAAACAATTTGGGTCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTACAAATTTAGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCTATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGACTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGACATTTGGAGCTACTGAAAAATCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGTCATTGGGCAATGTGACAGAGCAGTGAAGGCAATAAAAGAAGGTGGCAGTGTAGTAGCACTAACAGGAGCTGTTACACCACCTGGATTCAGATTTGTAGTGACTTCCAATGGAGCTGTTTTGAAGAAACTAAACCCATATTTAGAGAGTGGAAAGGTGAAGCCAATTATAGATCCCAAAGGTCCATTCTCTTTTGCTCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCCATGA

Protein sequence

>Msa1291140

MSLSTTTSHLTILPSLPSTSPLSLRFSFTFQPKTNQKTCHTTLLSSSSRHARFLVKSQSTTASSEAVKVTQVPSEMKAWVYGEYGGVDVLKFDSNVVVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPVGSEVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPTNLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGLAKQVFGASRVAATSSTRHLELLKNLGADLAIDYTKENFEDLPEKFDVVYDVIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFSFAQVAEAFSYIETNKATGKVVIFPIP*