AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1291140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291140 MtrunA17_Chr8g0365421 91.667 384 12 2 1 364 1 384 0.0 693
Msa1291140 MtrunA17_Chr7g0228011 67.742 310 79 3 76 364 8 317 4.88e-137 392
Msa1291140 MtrunA17_Chr6g0453201 62.739 314 96 3 72 364 7 320 1.49e-126 366
Msa1291140 MtrunA17_Chr6g0466321 58.917 314 108 3 72 364 15 328 2.22e-119 348
Msa1291140 MtrunA17_Chr6g0465501 58.599 314 109 3 72 364 15 328 4.26e-119 347
Msa1291140 MtrunA17_Chr6g0453191 62.021 287 88 3 72 337 7 293 3.34e-110 324
Msa1291140 MtrunA17_Chr8g0351271 42.812 313 148 7 77 363 5 312 6.69e-75 235
Msa1291140 MtrunA17_Chr8g0351481 42.857 308 147 6 77 360 5 307 4.13e-74 233
Msa1291140 MtrunA17_Chr4g0014691 32.941 340 159 14 76 362 6 329 1.22e-28 114
Msa1291140 MtrunA17_Chr4g0014541 32.941 340 159 14 76 362 6 329 1.74e-28 113
Msa1291140 MtrunA17_Chr4g0014971 31.657 338 167 10 76 362 6 330 4.74e-28 112
Msa1291140 MtrunA17_Chr4g0015051 31.965 341 162 11 76 362 6 330 1.69e-27 110
Msa1291140 MtrunA17_Chr4g0014951 31.268 339 167 10 76 362 6 330 1.42e-26 108
Msa1291140 MtrunA17_Chr4g0015091 31.642 335 166 10 76 360 6 327 2.68e-26 107
Msa1291140 MtrunA17_Chr4g0014931 30.330 333 178 7 76 362 6 330 1.29e-24 102
Msa1291140 MtrunA17_Chr7g0235021 29.483 329 179 9 76 359 6 326 3.39e-22 95.9
Msa1291140 MtrunA17_Chr2g0281301 29.080 337 177 15 74 360 12 336 1.49e-19 88.6
Msa1291140 MtrunA17_Chr2g0316731 26.901 342 188 10 74 360 24 358 1.64e-19 88.6
Msa1291140 MtrunA17_Chr2g0281281 28.657 335 177 15 76 360 1 323 7.23e-17 80.5
Msa1291140 MtrunA17_Chr6g0465551 53.030 66 30 1 72 136 15 80 1.78e-16 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291140 AT1G23740.1 75.719 313 56 2 72 364 74 386 6.70e-170 479
Msa1291140 AT4G13010.1 31.157 337 169 11 76 362 6 329 2.42e-22 96.7
Msa1291140 AT3G15090.1 28.571 245 146 8 77 297 33 272 5.11e-19 87.8

Find 83 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTCCACTCTCTAAATA+TGG 0.138626 8_3:-46457802 None:intergenic
CCCTAAACAATTTGGGTCTT+TGG 0.211682 8_3:+46456781 Msa1291140:CDS
GGACCTTTGGGATCTATAAT+TGG 0.222062 8_3:-46457829 None:intergenic
TTAGAAGGCCCTAAACAATT+TGG 0.258782 8_3:+46456773 Msa1291140:CDS
AAGAAGGCAGGGAAAGTTTA+AGG 0.274790 8_3:+46456021 Msa1291140:CDS
ATTCTTGTTCTCAATGGTTC+TGG 0.283840 8_3:+46456944 Msa1291140:CDS
CCAAAGACCCAAATTGTTTA+GGG 0.289840 8_3:-46456781 None:intergenic
TGAGCAAAGTCTAAATTTGT+AGG 0.300081 8_3:-46456845 None:intergenic
GCTTGGGTGTATGGAGAATA+TGG 0.307432 8_3:+46455890 Msa1291140:CDS
CAGAACTCTTATTTACTCAT+AGG 0.307864 8_3:-46457998 None:intergenic
GCCAAAGACCCAAATTGTTT+AGG 0.312179 8_3:-46456782 None:intergenic
ATCAAGGCATGCTAGATTCT+TGG 0.312339 8_3:+46455799 Msa1291140:CDS
TGAGACTGCTTATGAAGGTT+TGG 0.356657 8_3:+46456892 Msa1291140:CDS
GGCTACGGATTCTCCTCTTC+CGG 0.375887 8_3:+46456042 Msa1291140:CDS
CACTTCAAGCACTAGACATT+TGG 0.377637 8_3:+46457334 Msa1291140:CDS
AGCAAAAGAGAATGGACCTT+TGG 0.385814 8_3:-46457842 None:intergenic
GAAATGAAGGCTTGGGTGTA+TGG 0.386358 8_3:+46455881 Msa1291140:CDS
CCTTTCCACTCTCTAAATAT+GGG 0.387466 8_3:-46457801 None:intergenic
TAGAAGGCCCTAAACAATTT+GGG 0.401365 8_3:+46456774 Msa1291140:CDS
AAATCTATTCTTGTTCTCAA+TGG 0.403553 8_3:+46456938 Msa1291140:CDS
TCCTTCCGAAATGAAGGCTT+GGG 0.417863 8_3:+46455874 Msa1291140:CDS
GGCAGTGTAGTAGCACTAAC+AGG 0.429167 8_3:+46457712 Msa1291140:CDS
GCAAAAGAGAATGGACCTTT+GGG 0.433468 8_3:-46457841 None:intergenic
TTTGGTGTAAATCGGGTATC+CGG 0.435054 8_3:+46458098 Msa1291140:three_prime_UTR
AGAACTCTTATTTACTCATA+GGG 0.437018 8_3:-46457997 None:intergenic
GAAGGTTGGTAGTGAAGTAA+AGG 0.439790 8_3:+46456703 Msa1291140:intron
GATGTAGTTTATGATGTCAT+TGG 0.445257 8_3:+46457434 Msa1291140:CDS
ATACACCCAAGCCTTCATTT+CGG 0.448834 8_3:-46455879 None:intergenic
ACTTGATCTTCTTTAACATC+AGG 0.453650 8_3:-46455953 None:intergenic
TTTCTTCAAAACAGCTCCAT+TGG 0.455443 8_3:-46457773 None:intergenic
GTAAATGAGAAAGCATTAGA+AGG 0.456887 8_3:+46456758 Msa1291140:CDS
TTAAATGTCATAAAGTTTCA+AGG 0.458077 8_3:-46458071 None:intergenic
ACAAGTTCCTTCCGAAATGA+AGG 0.458472 8_3:+46455868 Msa1291140:CDS
TTCCTTCCGAAATGAAGGCT+TGG 0.463507 8_3:+46455873 Msa1291140:CDS
ATTGAAACAAACAAAGCTAC+TGG 0.463741 8_3:+46457889 Msa1291140:CDS
GAAACAACTTGCAACTGATA+AGG 0.464131 8_3:+46455623 Msa1291140:five_prime_UTR
TGAAGGAAGTGAAGGAAGAA+TGG 0.477949 8_3:-46455690 None:intergenic
GCTATTGAGACTGCTTATGA+AGG 0.483022 8_3:+46456887 Msa1291140:CDS
CTTGTTCTCAATGGTTCTGG+TGG 0.485138 8_3:+46456947 Msa1291140:CDS
GCAACCTGAGCAAAAGAGAA+TGG 0.487160 8_3:-46457850 None:intergenic
CACTCTTGTCTTCTTCATCA+AGG 0.501112 8_3:+46455783 Msa1291140:CDS
TATGAAGGTTTGGAGAGGAC+TGG 0.503871 8_3:+46456902 Msa1291140:CDS
TTTATCTGATTCATGGGATG+GGG 0.509890 8_3:-46457927 None:intergenic
ATCGATCACATCACCGGAAG+AGG 0.514598 8_3:-46456055 None:intergenic
AGCTGTTGAGGAGAAATTGT+TGG 0.514874 8_3:+46456814 Msa1291140:CDS
AGATTTGTAGTGACTTCCAA+TGG 0.518081 8_3:+46457757 Msa1291140:CDS
GCAGGGAAAGTTTAAGGCTA+CGG 0.519335 8_3:+46456027 Msa1291140:CDS
GGCTGAGTACACAGCTGTTG+AGG 0.523349 8_3:+46456802 Msa1291140:CDS
TGTTGATGGTAAAAGAAGGC+AGG 0.523502 8_3:+46456009 Msa1291140:CDS
AAAGTGGGCGATGAAGTATA+TGG 0.534553 8_3:+46456731 Msa1291140:CDS
GCGGCTCTTAACCCTGTTGA+TGG 0.535408 8_3:+46455995 Msa1291140:CDS
ATCTACTACTGCTTCTTCTG+AGG 0.538407 8_3:+46455832 Msa1291140:CDS
AGTGAAAGTGGTGAAGTTGA+AGG 0.541007 8_3:-46455707 None:intergenic
GTCACTACAAATCTGAATCC+AGG 0.545336 8_3:-46457748 None:intergenic
TAAATGTCATAAAGTTTCAA+GGG 0.552176 8_3:-46458070 None:intergenic
GGTGAAGTTGAAGGAAGTGA+AGG 0.559167 8_3:-46455698 None:intergenic
ACAGGAGCTGTTACACCACC+TGG 0.561590 8_3:+46457730 Msa1291140:CDS
GCAATGTGACAGAGCAGTGA+AGG 0.567763 8_3:+46457675 Msa1291140:CDS
AACATCAGGTACAACAACAT+TGG 0.569750 8_3:-46455939 None:intergenic
AAGGAAAATCTGAGTGAAAG+TGG 0.572827 8_3:-46455719 None:intergenic
AATGGTGAGGTGAGAAGTTG+TGG 0.574018 8_3:-46455672 None:intergenic
ACCCTGTTGATGGTAAAAGA+AGG 0.577796 8_3:+46456005 Msa1291140:CDS
CTAAACCCATATTTAGAGAG+TGG 0.581322 8_3:+46457796 Msa1291140:CDS
ACCCAAGCCTTCATTTCGGA+AGG 0.582988 8_3:-46455875 None:intergenic
TAAGCAGTCTCAATAGCAAG+AGG 0.589060 8_3:-46456881 None:intergenic
GCAGTGAAGGCAATAAAAGA+AGG 0.594518 8_3:+46457688 Msa1291140:CDS
AGAACAAGAATAGATTTACC+AGG 0.605332 8_3:-46456932 None:intergenic
GTTGATGGTAAAAGAAGGCA+GGG 0.608172 8_3:+46456010 Msa1291140:CDS
GAAGTAAAGGAGTTCAAAGT+GGG 0.608485 8_3:+46456716 Msa1291140:CDS
GGTGAGGTGAGAAGTTGTGG+TGG 0.610962 8_3:-46455669 None:intergenic
TCTTGTTAAAGTTGTTGCTG+CGG 0.622427 8_3:+46455976 Msa1291140:CDS
AACAAACAAAGCTACTGGAA+AGG 0.637522 8_3:+46457894 Msa1291140:CDS
TGGGTGTATGGAGAATATGG+AGG 0.638579 8_3:+46455893 Msa1291140:CDS
CAAATGTCTAGTGCTTGAAG+TGG 0.641907 8_3:-46457333 None:intergenic
TGAAGTAAAGGAGTTCAAAG+TGG 0.643712 8_3:+46456715 Msa1291140:CDS
CTGCTTATGAAGGTTTGGAG+AGG 0.648485 8_3:+46456897 Msa1291140:CDS
CCCATATTTAGAGAGTGGAA+AGG 0.653180 8_3:+46457801 Msa1291140:CDS
GTGAAGGCAATAAAAGAAGG+TGG 0.653752 8_3:+46457691 Msa1291140:CDS
TTTGGCTATTGACTACACAA+AGG 0.684942 8_3:+46457382 Msa1291140:CDS
AAGCCAATTATAGATCCCAA+AGG 0.697488 8_3:+46457826 Msa1291140:CDS
AAAACACCAACGTTAAAACG+TGG 0.713375 8_3:+46455580 None:intergenic
GAAGTGAAGGAAGAATGGTG+AGG 0.729256 8_3:-46455685 None:intergenic
ACTACAAATCTGAATCCAGG+TGG 0.755064 8_3:-46457745 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTTTTTTAATAGTTTA+CGG - chr8_3:46456502-46456521 None:intergenic 10.0%
!!! TTTATGACATTTAATTTTTT+TGG + chr8_3:46458080-46458099 Msa1291140:three_prime_UTR 10.0%
!!! TAATTAAGTTTTTGTATTCT+AGG + chr8_3:46456600-46456619 Msa1291140:intron 15.0%
!! TTAAGTAATGAAATCAAATT+TGG + chr8_3:46456628-46456647 Msa1291140:intron 15.0%
!!! GTGTATTTTATTAATTAGTT+TGG - chr8_3:46457572-46457591 None:intergenic 15.0%
!!! ATAATTTTTATCTGATTCAT+GGG - chr8_3:46457936-46457955 None:intergenic 15.0%
!!! TATAATTTTTATCTGATTCA+TGG - chr8_3:46457937-46457956 None:intergenic 15.0%
!! ATGAATCAGATAAAAATTAT+AGG + chr8_3:46457936-46457955 Msa1291140:exon 15.0%
!!! TTAATTTTTTTGGTGTAAAT+CGG + chr8_3:46458090-46458109 Msa1291140:three_prime_UTR 15.0%
!!! ACATTTGTTTTTGTTTTTCT+AGG + chr8_3:46456093-46456112 Msa1291140:intron 20.0%
!!! GAAGATGATTTTTAAATTTG+AGG + chr8_3:46456250-46456269 Msa1291140:intron 20.0%
!!! TGGTTATAATTTTGAGAAAA+TGG - chr8_3:46457079-46457098 None:intergenic 20.0%
!!! TAAACTACATCAAATTTTTC+TGG - chr8_3:46457425-46457444 None:intergenic 20.0%
!! AAATTGTTTGAAAGTTTGTA+TGG - chr8_3:46457503-46457522 None:intergenic 20.0%
!! ATACAAACTTTCAAACAATT+TGG + chr8_3:46457502-46457521 Msa1291140:intron 20.0%
!! TAAATGTCATAAAGTTTCAA+GGG - chr8_3:46458073-46458092 None:intergenic 20.0%
!! TTAAATGTCATAAAGTTTCA+AGG - chr8_3:46458074-46458093 None:intergenic 20.0%
!!! TAATTTTTTTGGTGTAAATC+GGG + chr8_3:46458091-46458110 Msa1291140:three_prime_UTR 20.0%
!!! TTTTTTGGTTAGTTTTTGGT+TGG - chr8_3:46455751-46455770 None:intergenic 25.0%
!!! CAAGTTTTTTGGTTAGTTTT+TGG - chr8_3:46455755-46455774 None:intergenic 25.0%
! GAATTCAAAAACTATGATAG+TGG + chr8_3:46456204-46456223 Msa1291140:intron 25.0%
!! TTACATTTGCACGAAAATTT+TGG + chr8_3:46456326-46456345 Msa1291140:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG - chr8_3:46456478-46456497 None:intergenic 25.0%
! AAATCTATTCTTGTTCTCAA+TGG + chr8_3:46456938-46456957 Msa1291140:CDS 25.0%
!! TTTTAGACGAAGTATATTTC+TGG + chr8_3:46457192-46457211 Msa1291140:intron 25.0%
!! TTTAAAATTTCTTGCGCATA+AGG + chr8_3:46457215-46457234 Msa1291140:intron 25.0%
! TTAAAATTTCTTGCGCATAA+GGG + chr8_3:46457216-46457235 Msa1291140:intron 25.0%
!! AGAACTCTTATTTACTCATA+GGG - chr8_3:46458000-46458019 None:intergenic 25.0%
ACTTGATCTTCTTTAACATC+AGG - chr8_3:46455956-46455975 None:intergenic 30.0%
!!! GTTTTTGTTTTTCTAGGTTG+TGG + chr8_3:46456099-46456118 Msa1291140:intron 30.0%
!! GTAAATGAGAAAGCATTAGA+AGG + chr8_3:46456758-46456777 Msa1291140:CDS 30.0%
TGAGCAAAGTCTAAATTTGT+AGG - chr8_3:46456848-46456867 None:intergenic 30.0%
AGAACAAGAATAGATTTACC+AGG - chr8_3:46456935-46456954 None:intergenic 30.0%
CTACAATATTTCAGCATGAA+AGG - chr8_3:46457016-46457035 None:intergenic 30.0%
AAATATTGTAGCAATGACAC+CGG + chr8_3:46457025-46457044 Msa1291140:intron 30.0%
ATGATATTGACACATTGTGT+TGG - chr8_3:46457099-46457118 None:intergenic 30.0%
AAAGTTCTTAGTCAGGTAAA+GGG - chr8_3:46457175-46457194 None:intergenic 30.0%
AAAAGTTCTTAGTCAGGTAA+AGG - chr8_3:46457176-46457195 None:intergenic 30.0%
GATGTAGTTTATGATGTCAT+TGG + chr8_3:46457434-46457453 Msa1291140:CDS 30.0%
TGAAAGTTTGTATGGAAGAT+TGG - chr8_3:46457495-46457514 None:intergenic 30.0%
!! ACTGATTTTCAAAAACTCTC+TGG - chr8_3:46457528-46457547 None:intergenic 30.0%
ATTGAAACAAACAAAGCTAC+TGG + chr8_3:46457889-46457908 Msa1291140:CDS 30.0%
! TTTTATCTGATTCATGGGAT+GGG - chr8_3:46457931-46457950 None:intergenic 30.0%
! TTTTTATCTGATTCATGGGA+TGG - chr8_3:46457932-46457951 None:intergenic 30.0%
! CAGAACTCTTATTTACTCAT+AGG - chr8_3:46458001-46458020 None:intergenic 30.0%
GAAACAACTTGCAACTGATA+AGG + chr8_3:46455623-46455642 Msa1291140:five_prime_UTR 35.0%
AAGGAAAATCTGAGTGAAAG+TGG - chr8_3:46455722-46455741 None:intergenic 35.0%
!!! AGTTTTTGGTTGGAAAGTGA+AGG - chr8_3:46455741-46455760 None:intergenic 35.0%
!!! GTGTTGTGTGACAAGTTTTT+TGG - chr8_3:46455766-46455785 None:intergenic 35.0%
AACATCAGGTACAACAACAT+TGG - chr8_3:46455942-46455961 None:intergenic 35.0%
TCTTGTTAAAGTTGTTGCTG+CGG + chr8_3:46455976-46455995 Msa1291140:CDS 35.0%
TGGAATCTGTGTGAAGATAT+TGG + chr8_3:46456292-46456311 Msa1291140:intron 35.0%
CCAAACAGAAGCTAAATTAC+TGG - chr8_3:46456373-46456392 None:intergenic 35.0%
! CCAGTAATTTAGCTTCTGTT+TGG + chr8_3:46456370-46456389 Msa1291140:intron 35.0%
TGAAGTAAAGGAGTTCAAAG+TGG + chr8_3:46456715-46456734 Msa1291140:CDS 35.0%
GAAGTAAAGGAGTTCAAAGT+GGG + chr8_3:46456716-46456735 Msa1291140:CDS 35.0%
TTAGAAGGCCCTAAACAATT+TGG + chr8_3:46456773-46456792 Msa1291140:CDS 35.0%
TAGAAGGCCCTAAACAATTT+GGG + chr8_3:46456774-46456793 Msa1291140:CDS 35.0%
CCAAAGACCCAAATTGTTTA+GGG - chr8_3:46456784-46456803 None:intergenic 35.0%
ATTCTTGTTCTCAATGGTTC+TGG + chr8_3:46456944-46456963 Msa1291140:CDS 35.0%
GAGTAAATACCTGAATCACT+AGG - chr8_3:46456982-46457001 None:intergenic 35.0%
CAATGTGTCAATATCATGTC+CGG + chr8_3:46457102-46457121 Msa1291140:intron 35.0%
TCGTCTAAAAGTTCTTAGTC+AGG - chr8_3:46457182-46457201 None:intergenic 35.0%
! CAGCTAGCTAAACAAGTTTT+TGG + chr8_3:46457293-46457312 Msa1291140:intron 35.0%
TTGGAGCTACTGAAAAATCT+TGG + chr8_3:46457353-46457372 Msa1291140:CDS 35.0%
GAAAAATCTTGGAGCTGATT+TGG + chr8_3:46457364-46457383 Msa1291140:CDS 35.0%
! TTTGGCTATTGACTACACAA+AGG + chr8_3:46457382-46457401 Msa1291140:CDS 35.0%
AGTTTATAGACCAAAACGTG+AGG + chr8_3:46457545-46457564 Msa1291140:intron 35.0%
AAGACGCGTTTGTAGATTTA+AGG + chr8_3:46457617-46457636 Msa1291140:intron 35.0%
CCAAGTAAAGGATGTTAGTT+TGG - chr8_3:46457644-46457663 None:intergenic 35.0%
CCAAACTAACATCCTTTACT+TGG + chr8_3:46457641-46457660 Msa1291140:intron 35.0%
AGATTTGTAGTGACTTCCAA+TGG + chr8_3:46457757-46457776 Msa1291140:CDS 35.0%
TTTCTTCAAAACAGCTCCAT+TGG - chr8_3:46457776-46457795 None:intergenic 35.0%
CTAAACCCATATTTAGAGAG+TGG + chr8_3:46457796-46457815 Msa1291140:CDS 35.0%
CCTTTCCACTCTCTAAATAT+GGG - chr8_3:46457804-46457823 None:intergenic 35.0%
ACCTTTCCACTCTCTAAATA+TGG - chr8_3:46457805-46457824 None:intergenic 35.0%
AAGCCAATTATAGATCCCAA+AGG + chr8_3:46457826-46457845 Msa1291140:CDS 35.0%
AACAAACAAAGCTACTGGAA+AGG + chr8_3:46457894-46457913 Msa1291140:CDS 35.0%
TTTATCTGATTCATGGGATG+GGG - chr8_3:46457930-46457949 None:intergenic 35.0%
TGAAGGAAGTGAAGGAAGAA+TGG - chr8_3:46455693-46455712 None:intergenic 40.0%
AGTGAAAGTGGTGAAGTTGA+AGG - chr8_3:46455710-46455729 None:intergenic 40.0%
CACTCTTGTCTTCTTCATCA+AGG + chr8_3:46455783-46455802 Msa1291140:CDS 40.0%
ATCAAGGCATGCTAGATTCT+TGG + chr8_3:46455799-46455818 Msa1291140:CDS 40.0%
ATCTACTACTGCTTCTTCTG+AGG + chr8_3:46455832-46455851 Msa1291140:CDS 40.0%
ACAAGTTCCTTCCGAAATGA+AGG + chr8_3:46455868-46455887 Msa1291140:CDS 40.0%
ATACACCCAAGCCTTCATTT+CGG - chr8_3:46455882-46455901 None:intergenic 40.0%
!! ACCCTGTTGATGGTAAAAGA+AGG + chr8_3:46456005-46456024 Msa1291140:CDS 40.0%
! GCCTTCTTTTACCATCAACA+GGG - chr8_3:46456009-46456028 None:intergenic 40.0%
! TGCCTTCTTTTACCATCAAC+AGG - chr8_3:46456010-46456029 None:intergenic 40.0%
!! TGTTGATGGTAAAAGAAGGC+AGG + chr8_3:46456009-46456028 Msa1291140:CDS 40.0%
!! GTTGATGGTAAAAGAAGGCA+GGG + chr8_3:46456010-46456029 Msa1291140:CDS 40.0%
AAGAAGGCAGGGAAAGTTTA+AGG + chr8_3:46456021-46456040 Msa1291140:CDS 40.0%
TGAATGATCGATCACATCAC+CGG - chr8_3:46456064-46456083 None:intergenic 40.0%
GCTTCTAGCAGAAGAAGAAA+AGG + chr8_3:46456177-46456196 Msa1291140:intron 40.0%
TGAGGAAAGCTTACCGAAAT+TGG + chr8_3:46456268-46456287 Msa1291140:intron 40.0%
GAGGAAAGCTTACCGAAATT+GGG + chr8_3:46456269-46456288 Msa1291140:intron 40.0%
ACACAGATTCCACCCAATTT+CGG - chr8_3:46456284-46456303 None:intergenic 40.0%
TTTGTCCATTAGACTGTTCC+TGG + chr8_3:46456656-46456675 Msa1291140:intron 40.0%
CATATCCAGGAACAGTCTAA+TGG - chr8_3:46456664-46456683 None:intergenic 40.0%
TTCCTGGATATGATGTTGCT+GGG + chr8_3:46456672-46456691 Msa1291140:intron 40.0%
!! GAAGGTTGGTAGTGAAGTAA+AGG + chr8_3:46456703-46456722 Msa1291140:intron 40.0%
AAAGTGGGCGATGAAGTATA+TGG + chr8_3:46456731-46456750 Msa1291140:CDS 40.0%
CCCTAAACAATTTGGGTCTT+TGG + chr8_3:46456781-46456800 Msa1291140:CDS 40.0%
GCCAAAGACCCAAATTGTTT+AGG - chr8_3:46456785-46456804 None:intergenic 40.0%
AGCTGTTGAGGAGAAATTGT+TGG + chr8_3:46456814-46456833 Msa1291140:CDS 40.0%
TAAGCAGTCTCAATAGCAAG+AGG - chr8_3:46456884-46456903 None:intergenic 40.0%
GCTATTGAGACTGCTTATGA+AGG + chr8_3:46456887-46456906 Msa1291140:CDS 40.0%
TGAGACTGCTTATGAAGGTT+TGG + chr8_3:46456892-46456911 Msa1291140:CDS 40.0%
GTTATTGCTCTATGAAGCAC+AGG - chr8_3:46457136-46457155 None:intergenic 40.0%
GCTGCAAGTCATTAAAGGTA+TGG - chr8_3:46457277-46457296 None:intergenic 40.0%
AGCTAGCTGCAAGTCATTAA+AGG - chr8_3:46457282-46457301 None:intergenic 40.0%
CAAATGTCTAGTGCTTGAAG+TGG - chr8_3:46457336-46457355 None:intergenic 40.0%
CACTTCAAGCACTAGACATT+TGG + chr8_3:46457334-46457353 Msa1291140:CDS 40.0%
!! TTAGTTTGGTCCTCACGTTT+TGG - chr8_3:46457558-46457577 None:intergenic 40.0%
! TCCTTTACTTGGTGATTTGC+AGG + chr8_3:46457652-46457671 Msa1291140:intron 40.0%
! CCTTTACTTGGTGATTTGCA+GGG + chr8_3:46457653-46457672 Msa1291140:intron 40.0%
GCAGTGAAGGCAATAAAAGA+AGG + chr8_3:46457688-46457707 Msa1291140:CDS 40.0%
GTGAAGGCAATAAAAGAAGG+TGG + chr8_3:46457691-46457710 Msa1291140:CDS 40.0%
ACTACAAATCTGAATCCAGG+TGG - chr8_3:46457748-46457767 None:intergenic 40.0%
GTCACTACAAATCTGAATCC+AGG - chr8_3:46457751-46457770 None:intergenic 40.0%
CCCATATTTAGAGAGTGGAA+AGG + chr8_3:46457801-46457820 Msa1291140:CDS 40.0%
!! GGACCTTTGGGATCTATAAT+TGG - chr8_3:46457832-46457851 None:intergenic 40.0%
GCAAAAGAGAATGGACCTTT+GGG - chr8_3:46457844-46457863 None:intergenic 40.0%
AGCAAAAGAGAATGGACCTT+TGG - chr8_3:46457845-46457864 None:intergenic 40.0%
! TTTGGTGTAAATCGGGTATC+CGG + chr8_3:46458098-46458117 Msa1291140:three_prime_UTR 40.0%
AATGGTGAGGTGAGAAGTTG+TGG - chr8_3:46455675-46455694 None:intergenic 45.0%
GAAGTGAAGGAAGAATGGTG+AGG - chr8_3:46455688-46455707 None:intergenic 45.0%
GGTGAAGTTGAAGGAAGTGA+AGG - chr8_3:46455701-46455720 None:intergenic 45.0%
TTCCTTCCGAAATGAAGGCT+TGG + chr8_3:46455873-46455892 Msa1291140:CDS 45.0%
TCCTTCCGAAATGAAGGCTT+GGG + chr8_3:46455874-46455893 Msa1291140:CDS 45.0%
GAAATGAAGGCTTGGGTGTA+TGG + chr8_3:46455881-46455900 Msa1291140:CDS 45.0%
GCTTGGGTGTATGGAGAATA+TGG + chr8_3:46455890-46455909 Msa1291140:CDS 45.0%
TGGGTGTATGGAGAATATGG+AGG + chr8_3:46455893-46455912 Msa1291140:CDS 45.0%
! GCAGGGAAAGTTTAAGGCTA+CGG + chr8_3:46456027-46456046 Msa1291140:CDS 45.0%
GAAAGCTTACCGAAATTGGG+TGG + chr8_3:46456272-46456291 Msa1291140:intron 45.0%
GTTCCTGGATATGATGTTGC+TGG + chr8_3:46456671-46456690 Msa1291140:intron 45.0%
TCCTGGATATGATGTTGCTG+GGG + chr8_3:46456673-46456692 Msa1291140:intron 45.0%
CTGCTTATGAAGGTTTGGAG+AGG + chr8_3:46456897-46456916 Msa1291140:CDS 45.0%
TATGAAGGTTTGGAGAGGAC+TGG + chr8_3:46456902-46456921 Msa1291140:CDS 45.0%
!! CTTGTTCTCAATGGTTCTGG+TGG + chr8_3:46456947-46456966 Msa1291140:CDS 45.0%
AGTTGGAAGCCTAGTGATTC+AGG + chr8_3:46456970-46456989 Msa1291140:intron 45.0%
CATGTAATCATCACATGCGC+CGG - chr8_3:46457047-46457066 None:intergenic 45.0%
CCCTGCAAATCACCAAGTAA+AGG - chr8_3:46457656-46457675 None:intergenic 45.0%
! AGGTCCATTCTCTTTTGCTC+AGG + chr8_3:46457846-46457865 Msa1291140:CDS 45.0%
GCAACCTGAGCAAAAGAGAA+TGG - chr8_3:46457853-46457872 None:intergenic 45.0%
ACCCAAGCCTTCATTTCGGA+AGG - chr8_3:46455878-46455897 None:intergenic 50.0%
ATCGATCACATCACCGGAAG+AGG - chr8_3:46456058-46456077 None:intergenic 50.0%
ACCCCAGCAACATCATATCC+AGG - chr8_3:46456677-46456696 None:intergenic 50.0%
TGTTGCTGGGGTTGTAGTGA+AGG + chr8_3:46456685-46456704 Msa1291140:intron 50.0%
! GAGAGGACTGGATTTTCTCC+TGG + chr8_3:46456914-46456933 Msa1291140:CDS 50.0%
!! CTCAATGGTTCTGGTGGAGT+TGG + chr8_3:46456953-46456972 Msa1291140:intron 50.0%
GCAATGTGACAGAGCAGTGA+AGG + chr8_3:46457675-46457694 Msa1291140:CDS 50.0%
GGCAGTGTAGTAGCACTAAC+AGG + chr8_3:46457712-46457731 Msa1291140:CDS 50.0%
GGTGAGGTGAGAAGTTGTGG+TGG - chr8_3:46455672-46455691 None:intergenic 55.0%
GCGGCTCTTAACCCTGTTGA+TGG + chr8_3:46455995-46456014 Msa1291140:CDS 55.0%
GGCTACGGATTCTCCTCTTC+CGG + chr8_3:46456042-46456061 Msa1291140:CDS 55.0%
GCTGGGGTTGTAGTGAAGGT+TGG + chr8_3:46456689-46456708 Msa1291140:intron 55.0%
GGCTGAGTACACAGCTGTTG+AGG + chr8_3:46456802-46456821 Msa1291140:CDS 55.0%
TGAAGCACAGGCACAGACAC+CGG - chr8_3:46457124-46457143 None:intergenic 55.0%
ACAGGAGCTGTTACACCACC+TGG + chr8_3:46457730-46457749 Msa1291140:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 46455594 46458121 46455594 ID=Msa1291140;Name=Msa1291140
chr8_3 mRNA 46455594 46458121 46455594 ID=Msa1291140-mRNA-1;Parent=Msa1291140;Name=Msa1291140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=65|0.33|0.75|1|0.66|0.75|4|182|364
chr8_3 exon 46455594 46456063 46455594 ID=Msa1291140-mRNA-1:exon:12844;Parent=Msa1291140-mRNA-1
chr8_3 exon 46456707 46456970 46456707 ID=Msa1291140-mRNA-1:exon:12845;Parent=Msa1291140-mRNA-1
chr8_3 exon 46457296 46457455 46457296 ID=Msa1291140-mRNA-1:exon:12846;Parent=Msa1291140-mRNA-1
chr8_3 exon 46457674 46458121 46457674 ID=Msa1291140-mRNA-1:exon:12847;Parent=Msa1291140-mRNA-1
chr8_3 five_prime_UTR 46455594 46455658 46455594 ID=Msa1291140-mRNA-1:five_prime_utr;Parent=Msa1291140-mRNA-1
chr8_3 CDS 46455659 46456063 46455659 ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3 CDS 46456707 46456970 46456707 ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3 CDS 46457296 46457455 46457296 ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3 CDS 46457674 46457939 46457674 ID=Msa1291140-mRNA-1:cds;Parent=Msa1291140-mRNA-1
chr8_3 three_prime_UTR 46457940 46458121 46457940 ID=Msa1291140-mRNA-1:three_prime_utr;Parent=Msa1291140-mRNA-1
Gene Sequence

>Msa1291140

ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTTCCTTCACTTCCTTCAACTTCACCACTTTCACTCAGATTTTCCTTCACTTTCCAACCAAAAACTAACCAAAAAACTTGTCACACAACACTCTTGTCTTCTTCATCAAGGCATGCTAGATTCTTGGTGAAGTCTCAATCTACTACTGCTTCTTCTGAGGCTGTGAAAGTGACACAAGTTCCTTCCGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTTGATGTTTTGAAATTTGACTCCAATGTTGTTGTACCTGATGTTAAAGAAGATCAAGTTCTTGTTAAAGTTGTTGCTGCGGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACGGATTCTCCTCTTCCGGTTGGTAGTGAAGTAAAGGAGTTCAAAGTGGGCGATGAAGTATATGGTGATGTAAATGAGAAAGCATTAGAAGGCCCTAAACAATTTGGGTCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTACAAATTTAGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCTATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGACTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGACATTTGGAGCTACTGAAAAATCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGTCATTGGGCAATGTGACAGAGCAGTGAAGGCAATAAAAGAAGGTGGCAGTGTAGTAGCACTAACAGGAGCTGTTACACCACCTGGATTCAGATTTGTAGTGACTTCCAATGGAGCTGTTTTGAAGAAACTAAACCCATATTTAGAGAGTGGAAAGGTGAAGCCAATTATAGATCCCAAAGGTCCATTCTCTTTTGCTCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCCATGA

Protein sequence

>Msa1291140

MSLSTTTSHLTILPSLPSTSPLSLRFSFTFQPKTNQKTCHTTLLSSSSRHARFLVKSQSTTASSEAVKVTQVPSEMKAWVYGEYGGVDVLKFDSNVVVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPVGSEVKEFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPTNLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGLAKQVFGASRVAATSSTRHLELLKNLGADLAIDYTKENFEDLPEKFDVVYDVIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFSFAQVAEAFSYIETNKATGKVVIFPIP*