AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119910 MtrunA17_Chr7g0252041 96.466 481 9 5 1 479 1 475 0.0 932
Msa1119910 MtrunA17_Chr3g0131691 67.719 285 60 8 208 478 217 483 4.14e-119 357
Msa1119910 MtrunA17_Chr3g0141091 44.724 199 82 5 280 477 163 334 5.69e-40 147
Msa1119910 MtrunA17_Chr5g0411541 44.878 205 86 5 277 477 141 322 1.01e-37 140
Msa1119910 MtrunA17_Chr1g0211081 32.143 252 135 6 238 471 280 513 4.11e-31 125
Msa1119910 MtrunA17_Chr3g0089131 67.241 58 19 0 395 452 5 62 5.56e-21 87.4
Msa1119910 MtrunA17_Chr8g0365711 29.787 188 123 3 283 470 237 415 1.24e-18 87.8
Msa1119910 MtrunA17_Chr2g0298751 33.163 196 118 6 281 469 43 232 1.63e-18 84.7
Msa1119910 MtrunA17_Chr1g0185621 34.463 177 104 5 280 452 465 633 2.71e-18 87.8
Msa1119910 MtrunA17_Chr3g0135471 69.767 43 13 0 410 452 1 43 3.04e-15 70.5
Msa1119910 MtrunA17_Chr5g0400671 29.412 187 110 5 290 470 154 324 1.31e-14 74.7
Msa1119910 MtrunA17_Chr5g0400661 26.263 198 135 4 283 470 138 334 1.96e-14 74.3
Msa1119910 MtrunA17_Chr2g0318461 67.442 43 14 0 410 452 1 43 2.32e-14 67.8
Msa1119910 MtrunA17_Chr4g0002801 29.787 188 112 7 292 470 154 330 3.67e-14 73.6
Msa1119910 MtrunA17_Chr2g0280161 28.931 159 98 3 292 448 179 324 5.97e-14 73.2
Msa1119910 MtrunA17_Chr2g0320291 28.758 153 94 1 278 430 121 258 7.23e-14 72.4
Msa1119910 MtrunA17_Chr8g0346161 57.895 57 24 0 288 344 289 345 7.72e-14 73.6
Msa1119910 MtrunA17_Chr4g0028071 51.562 64 31 0 283 346 142 205 8.98e-14 72.4
Msa1119910 MtrunA17_Chr7g0275821 45.977 87 44 1 288 371 250 336 9.05e-14 73.2
Msa1119910 MtrunA17_Chr4g0052841 25.510 196 133 4 281 471 283 470 1.18e-13 73.2
Msa1119910 MtrunA17_Chr8g0346151 60.000 55 22 0 288 342 277 331 1.25e-13 72.8
Msa1119910 MtrunA17_Chr3g0089121 50.000 80 29 2 319 396 1 71 2.78e-13 66.2
Msa1119910 MtrunA17_Chr4g0049331 25.352 213 121 5 267 461 107 299 2.93e-13 70.5
Msa1119910 MtrunA17_Chr8g0366751 33.133 166 96 4 288 446 460 617 3.99e-13 71.6
Msa1119910 MtrunA17_Chr4g0002781 28.856 201 123 8 277 470 162 349 4.81e-13 70.5
Msa1119910 MtrunA17_Chr4g0052821 27.551 196 125 5 283 471 283 468 5.02e-13 70.9
Msa1119910 MtrunA17_Chr7g0260841 42.045 88 44 1 265 345 323 410 9.11e-13 70.5
Msa1119910 MtrunA17_Chr4g0033391 28.293 205 128 5 265 468 125 311 1.41e-12 68.6
Msa1119910 MtrunA17_Chr5g0411341 29.231 195 119 5 288 474 491 674 1.57e-12 69.7
Msa1119910 MtrunA17_Chr5g0404921 63.810 105 17 1 51 155 1 84 7.16e-12 62.0
Msa1119910 MtrunA17_Chr4g0054571 28.169 142 97 2 292 433 152 288 8.20e-12 66.2
Msa1119910 MtrunA17_Chr5g0400621 30.189 159 97 4 291 448 158 303 8.80e-12 66.2
Msa1119910 MtrunA17_Chr3g0089111 41.228 114 55 4 217 319 113 225 1.02e-11 64.7
Msa1119910 MtrunA17_Chr7g0225901 27.461 193 111 5 265 448 62 234 1.08e-11 65.1
Msa1119910 MtrunA17_Chr8g0336681 26.752 157 110 3 292 448 158 309 1.28e-11 65.9
Msa1119910 MtrunA17_Chr2g0307131 27.184 206 126 6 265 465 156 342 1.88e-11 65.5
Msa1119910 MtrunA17_Chr4g0033291 27.273 220 139 6 251 468 119 319 3.65e-11 64.3
Msa1119910 MtrunA17_Chr2g0333621 25.248 202 134 4 276 471 122 312 4.84e-11 63.9
Msa1119910 MtrunA17_Chr0c01g0489461 28.571 217 116 9 259 442 157 367 5.99e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119910 AT3G26744.1 55.102 392 134 10 118 478 113 493 2.37e-116 351
Msa1119910 AT3G26744.4 55.102 392 134 10 118 478 113 493 2.37e-116 351
Msa1119910 AT3G26744.2 55.102 392 134 10 118 478 113 493 2.37e-116 351
Msa1119910 AT1G12860.1 56.906 362 114 8 127 478 120 449 4.04e-113 341
Msa1119910 AT3G26744.6 54.098 366 126 10 118 452 113 467 9.90e-100 308
Msa1119910 AT1G12860.2 55.060 336 109 8 127 452 120 423 2.59e-96 297
Msa1119910 AT5G65640.1 45.146 206 93 5 275 477 160 348 8.93e-38 141
Msa1119910 AT5G10570.1 42.927 205 87 4 275 477 136 312 2.11e-33 129
Msa1119910 AT2G16910.1 40.102 197 99 6 289 471 313 504 5.32e-31 126
Msa1119910 AT5G65640.2 70.270 74 19 1 275 345 160 233 2.19e-21 94.7
Msa1119910 AT1G12860.3 38.235 204 92 6 127 321 120 298 2.30e-19 89.4
Msa1119910 AT5G57150.1 32.240 183 115 4 288 467 52 228 1.34e-17 82.8
Msa1119910 AT4G29930.2 30.323 155 88 3 289 443 53 187 2.54e-16 78.6
Msa1119910 AT3G26744.5 36.752 234 108 9 118 320 113 337 2.57e-16 80.9
Msa1119910 AT4G29930.5 30.323 155 88 3 289 443 53 187 7.36e-16 77.4
Msa1119910 AT5G57150.3 33.125 160 98 4 288 444 53 206 9.50e-16 76.6
Msa1119910 AT5G57150.2 33.333 159 97 4 288 443 53 205 1.14e-15 76.6
Msa1119910 AT5G57150.5 33.333 159 97 4 288 443 52 204 1.34e-15 76.3
Msa1119910 AT4G29930.6 30.323 155 91 4 289 443 53 190 3.09e-15 75.5
Msa1119910 AT2G46510.1 46.914 81 35 1 273 345 370 450 6.94e-15 77.4
Msa1119910 AT5G57150.4 33.333 159 97 4 288 443 53 205 7.47e-15 75.1
Msa1119910 AT2G28160.1 38.462 104 51 2 243 346 97 187 1.31e-14 75.1
Msa1119910 AT2G28160.2 38.462 104 51 2 243 346 97 187 1.41e-14 75.1
Msa1119910 AT4G09820.1 33.333 153 67 4 283 432 353 473 1.91e-14 75.9
Msa1119910 AT4G29930.4 47.761 67 35 0 289 355 53 119 2.12e-14 72.0
Msa1119910 AT4G29930.1 47.761 67 35 0 289 355 53 119 4.00e-14 72.8
Msa1119910 AT4G29930.3 47.059 68 36 0 288 355 52 119 5.28e-14 72.4
Msa1119910 AT4G29930.7 47.059 68 36 0 288 355 52 119 5.28e-14 72.4
Msa1119910 AT1G01260.1 41.322 121 54 4 251 354 382 502 1.19e-13 73.6
Msa1119910 AT1G01260.2 41.322 121 54 4 251 354 382 502 1.19e-13 73.6
Msa1119910 AT1G01260.3 41.322 121 54 4 251 354 382 502 1.19e-13 73.6
Msa1119910 AT4G17880.1 30.159 189 114 6 288 474 414 586 1.84e-13 73.2
Msa1119910 AT5G46760.1 31.707 164 94 5 288 446 413 563 3.55e-13 72.4
Msa1119910 AT1G32640.1 29.744 195 108 6 288 474 450 623 5.59e-13 71.6
Msa1119910 AT4G00870.1 47.761 67 33 1 283 347 240 306 2.11e-12 69.3
Msa1119910 AT1G10610.3 41.379 87 46 1 266 347 138 224 3.21e-12 68.2
Msa1119910 AT2G22760.2 23.669 169 118 4 281 448 110 268 3.71e-12 67.4
Msa1119910 AT1G10610.2 41.379 87 46 1 266 347 205 291 5.10e-12 68.2
Msa1119910 AT5G46830.1 31.250 192 96 8 288 465 341 510 5.34e-12 68.2
Msa1119910 AT1G10610.1 41.379 87 46 1 266 347 235 321 7.13e-12 67.8
Msa1119910 AT2G22760.1 23.669 169 118 4 281 448 110 268 1.13e-11 65.9
Msa1119910 AT2G22770.1 26.752 157 110 3 281 433 123 278 3.88e-11 64.7
Msa1119910 AT4G16430.1 41.975 81 40 1 272 345 295 375 4.95e-11 65.1
Msa1119910 AT2G22750.5 27.273 143 97 2 291 433 151 286 7.31e-11 63.9
Msa1119910 AT2G22750.4 27.273 143 97 2 291 433 155 290 8.46e-11 63.9
Msa1119910 AT2G22750.3 27.273 143 97 2 291 433 155 290 8.91e-11 63.5

Find 156 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCCATTTCAAATGGGTTAT+TGG 0.117688 7_3:+69063138 None:intergenic
GTTTGAAAATGGATTCTTTA+TGG 0.140965 7_3:-69063116 Msa1119910:CDS
GAATGATGAAGGAGAGAAAA+AGG 0.194051 7_3:+69063627 None:intergenic
TTTGAAATGGGGTTTGAAAA+TGG 0.212995 7_3:-69063127 Msa1119910:CDS
AATCTATGGTGTTTGTGTTT+TGG 0.283895 7_3:+69063224 None:intergenic
TTTGAAAATGGATTCTTTAT+GGG 0.287664 7_3:-69063115 Msa1119910:CDS
CTACGGTTAGTACCTCTATA+AGG 0.292591 7_3:+69061132 None:intergenic
ACCAATAACCCATTTGAAAT+GGG 0.328953 7_3:-69063139 Msa1119910:CDS
TCAGCCATCAAATTCTTTGC+AGG 0.331079 7_3:+69062665 None:intergenic
TGGTGTTTAGGTTCTGAGTT+AGG 0.331273 7_3:+69063415 None:intergenic
TACCAATAACCCATTTGAAA+TGG 0.336052 7_3:-69063140 Msa1119910:CDS
TCCAATGGGACTGTTGTTAC+TGG 0.340339 7_3:-69062722 Msa1119910:CDS
TGGATTTGAAATTGAATCTA+TGG 0.348162 7_3:+69063210 None:intergenic
TTGTTGTTGTTATCAGGTTC+GGG 0.349917 7_3:+69063334 None:intergenic
GTTGTTGTTGTTATCAGGTT+CGG 0.365211 7_3:+69063333 None:intergenic
GCTATCTACCATGAGGGCTT+TGG 0.366010 7_3:-69061548 Msa1119910:CDS
CAGGGAAGGGTCGGCGGAGT+TGG 0.367459 7_3:+69061896 None:intergenic
AGAGGAAGGTTGAGAAGAGT+TGG 0.371993 7_3:-69062838 Msa1119910:CDS
ATGTCTTGTTCGTGGTGTTT+AGG 0.383539 7_3:+69063403 None:intergenic
AACAAGAATCACCTTCTTCA+TGG 0.390694 7_3:-69063444 Msa1119910:CDS
TACAGGTGGAAGTTAGAGTA+AGG 0.391657 7_3:-69061624 Msa1119910:intron
TAAGCTATTCTATCTGATCT+TGG 0.393629 7_3:+69061041 None:intergenic
AGGGACCCACCCATGAAAAC+AGG 0.394342 7_3:+69063070 None:intergenic
AGCACTGCTTTAATTTGCTC+AGG 0.403065 7_3:+69061205 None:intergenic
CGCTGTTTCAGAAGCGTCGT+GGG 0.403975 7_3:-69062904 Msa1119910:CDS
GCTGTTATCAGTTGTTTCAA+TGG 0.414184 7_3:-69061499 Msa1119910:CDS
TTCCATACCTTGCTAATCTT+AGG 0.420834 7_3:+69062587 None:intergenic
TTTATCTTGTGTGTGAATAA+AGG 0.420835 7_3:+69063672 None:intergenic
TCATTTGTTCATAGATGGAC+AGG 0.422911 7_3:-69062057 Msa1119910:intron
TGATGATGTTGTTGTGGTTG+TGG 0.425371 7_3:+69062953 None:intergenic
AGACACAGACCTTTACTAAC+AGG 0.427733 7_3:+69061069 None:intergenic
ATGAACTTGTTGAGGTGGTA+AGG 0.429477 7_3:+69063507 None:intergenic
TCGGCGGAGTTGGTGTCAAC+GGG 0.431349 7_3:+69061906 None:intergenic
CAGGTTCGGGTTTGAAGAAA+GGG 0.432843 7_3:+69063347 None:intergenic
ACTTCCTGCAAAGAATTTGA+TGG 0.433280 7_3:-69062669 Msa1119910:CDS
CTTCTTGTTCCTGTTAGTAA+AGG 0.435621 7_3:-69061078 Msa1119910:three_prime_UTR
TAATAATCTTCACAACGAAC+TGG 0.439497 7_3:-69061981 Msa1119910:CDS
GTCGGCGGAGTTGGTGTCAA+CGG 0.448067 7_3:+69061905 None:intergenic
TCAGGTTCGGGTTTGAAGAA+AGG 0.456119 7_3:+69063346 None:intergenic
GCAATAGCTATTGCTATGGC+TGG 0.459874 7_3:-69063379 Msa1119910:CDS
TATCATTGAGTTTCTTCCTC+CGG 0.461791 7_3:+69062636 None:intergenic
CCTTGGATTGGATGTTCAGC+AGG 0.462769 7_3:-69061521 Msa1119910:CDS
GATAGAATAGCTTAATCTGT+AGG 0.462905 7_3:-69061032 Msa1119910:three_prime_UTR
ATGATAGGTTGTACATGCTT+AGG 0.464707 7_3:-69062619 Msa1119910:CDS
TAGATCCTCCTTGACTCGAC+AGG 0.464973 7_3:+69061877 None:intergenic
GAGGAAGGTTGAGAAGAGTT+GGG 0.468510 7_3:-69062837 Msa1119910:CDS
GGCTTTGGATAACCTTGGAT+TGG 0.469562 7_3:-69061533 Msa1119910:CDS
AATTATGATTCTGATGAGAA+TGG 0.469901 7_3:-69062761 Msa1119910:CDS
GGAGTACATCCTGGCCTTCT+CGG 0.474767 7_3:+69061227 None:intergenic
GCAAATTAAAGCAGTGCTGT+TGG 0.475893 7_3:-69061200 Msa1119910:CDS
GGCGTTGGAGATTCCGAGGT+TGG 0.477216 7_3:-69062882 Msa1119910:CDS
TTTGCTCAGGGAGTACATCC+TGG 0.484223 7_3:+69061218 None:intergenic
GCAGCAATGCCGAGAAGGCC+AGG 0.488201 7_3:-69061236 Msa1119910:intron
CATGAGAAAATTGTCTGGTA+AGG 0.488924 7_3:+69063249 None:intergenic
TACGGTTAGTACCTCTATAA+GGG 0.489290 7_3:+69061133 None:intergenic
TTTCAAACCCCATTTCAAAT+GGG 0.490689 7_3:+69063131 None:intergenic
ATGATTTGAATAATTCCAAT+GGG 0.493229 7_3:-69062736 Msa1119910:CDS
ACAAAACATATGAATGTTGA+CGG 0.497241 7_3:+69061591 None:intergenic
GAAGAAGGAAGTGGTGGTGG+TGG 0.497277 7_3:-69062812 Msa1119910:CDS
TTGGATTCAGCGGGCTACCA+TGG 0.497757 7_3:-69061181 Msa1119910:CDS
TCAGAAGCGTCGTGGGGCGT+TGG 0.498023 7_3:-69062897 Msa1119910:CDS
ATGAGGGCTTTGGATAACCT+TGG 0.500549 7_3:-69061538 Msa1119910:CDS
AGGAAACTCAGAAGCTGAAA+GGG 0.502922 7_3:+69063051 None:intergenic
TGTTGTTGTGGTTCAGTCCA+AGG 0.506094 7_3:+69063469 None:intergenic
ATTCCGAGGTTGGAGACTGT+TGG 0.507434 7_3:-69062872 Msa1119910:CDS
ATGGACAGGGCTTCAATACT+CGG 0.509966 7_3:-69062043 Msa1119910:CDS
ATCTGTAGGGTGGAGGAGAT+AGG 0.510503 7_3:-69061018 Msa1119910:three_prime_UTR
CGCTTCTGAAACAGCGTAGT+GGG 0.510927 7_3:+69062911 None:intergenic
TTGTTGAATTTATGATTAAG+TGG 0.511023 7_3:-69060950 Msa1119910:three_prime_UTR
GAAGAAGAAGGAAGTGGTGG+TGG 0.513360 7_3:-69062815 Msa1119910:CDS
ACCAGTAACAACAGTCCCAT+TGG 0.513722 7_3:+69062721 None:intergenic
GAAGCACTGAAAGGTGGTAC+TGG 0.513909 7_3:+69063004 None:intergenic
GGAGGAAGAAACTCAATGAT+AGG 0.514773 7_3:-69062634 Msa1119910:CDS
TAGTAAAGGTCTGTGTCTCC+AGG 0.517762 7_3:-69061064 Msa1119910:three_prime_UTR
AGTTGGGAAGAAGAAGGAAG+TGG 0.519117 7_3:-69062821 Msa1119910:CDS
TGCTGATGATGATGTTGTTG+TGG 0.520294 7_3:+69062947 None:intergenic
ATAAAATGCTACCCTTATAG+AGG 0.522490 7_3:-69061144 Msa1119910:three_prime_UTR
TGGTGCATGAGAAAATTGTC+TGG 0.522663 7_3:+69063244 None:intergenic
ATTTGATGGCTGAGAGGCGC+CGG 0.526012 7_3:-69062655 Msa1119910:CDS
AATGATTTGAATAATTCCAA+TGG 0.529844 7_3:-69062737 Msa1119910:CDS
CTATTGCAATGTCTTGTTCG+TGG 0.530088 7_3:+69063395 None:intergenic
GAGGAAACTCAGAAGCTGAA+AGG 0.532923 7_3:+69063050 None:intergenic
TCAGAAGGGGAAGAAGAAGA+AGG 0.533310 7_3:-69062693 Msa1119910:CDS
TGAACTTGTTGAGGTGGTAA+GGG 0.534290 7_3:+69063508 None:intergenic
GAGAAGAGTTGGGAAGAAGA+AGG 0.536472 7_3:-69062827 Msa1119910:CDS
TTGTGTGTGAATAAAGGAAG+AGG 0.537578 7_3:+69063678 None:intergenic
CTCCTTGACTCGACAGGGAA+GGG 0.537622 7_3:+69061883 None:intergenic
TTTCCAACAGTCTCCAACCT+CGG 0.538830 7_3:+69062869 None:intergenic
ATAATACTCTCACTATACCT+TGG 0.539865 7_3:-69063486 Msa1119910:CDS
GTCAAGGAGGATCTATATCC+TGG 0.540168 7_3:-69061869 Msa1119910:CDS
ACAGGTGGAAGTTAGAGTAA+GGG 0.540261 7_3:-69061623 Msa1119910:intron
TTTAGGTTCTGAGTTAGGTG+TGG 0.540336 7_3:+69063420 None:intergenic
AGCAGTGCTGTTGGATTCAG+CGG 0.541017 7_3:-69061191 Msa1119910:CDS
ATAGAATAGCTTAATCTGTA+GGG 0.546836 7_3:-69061031 Msa1119910:three_prime_UTR
GACCCTTCCCTGTCGAGTCA+AGG 0.546957 7_3:-69061885 Msa1119910:CDS
GTGGAAGTTAGAGTAAGGGA+AGG 0.547671 7_3:-69061619 Msa1119910:CDS
CCAATAACCCATTTGAAATG+GGG 0.552722 7_3:-69063138 Msa1119910:CDS
AGATGCAGTTGACTACTTGA+AGG 0.553444 7_3:-69062020 Msa1119910:CDS
ACGCTGTTTCAGAAGCGTCG+TGG 0.558156 7_3:-69062905 Msa1119910:CDS
CATTGCAATAGCTATTGCTA+TGG 0.561250 7_3:-69063383 Msa1119910:CDS
AAGGTTATCCAAAGCCCTCA+TGG 0.562752 7_3:+69061540 None:intergenic
GAGAGACACTACACAACACT+TGG 0.569418 7_3:-69063730 Msa1119910:five_prime_UTR
TTGGGGCTTAACAAGTCACC+AGG 0.570388 7_3:+69061851 None:intergenic
CCTCCTTGACTCGACAGGGA+AGG 0.571166 7_3:+69061882 None:intergenic
TGTTACTGGTGGAGATCAGA+AGG 0.571281 7_3:-69062708 Msa1119910:CDS
TGGAAGTTAGAGTAAGGGAA+GGG 0.572558 7_3:-69061618 Msa1119910:CDS
ACAGCAAGCTACAGCAGCTA+CGG 0.573063 7_3:+69061115 None:intergenic
GATGGTTGCAGCAATGAGCC+AGG 0.575197 7_3:+69061947 None:intergenic
TCTTAGCAGCAATGCCGAGA+AGG 0.577695 7_3:-69061241 Msa1119910:intron
TGTGGTTGAGCTAGCTCAAG+AGG 0.578961 7_3:+69062971 None:intergenic
ATGAGAAAATTGTCTGGTAA+GGG 0.579342 7_3:+69063250 None:intergenic
CATTTGTTCATAGATGGACA+GGG 0.581639 7_3:-69062056 Msa1119910:intron
TGGGAAGAAGAAGGAAGTGG+TGG 0.581705 7_3:-69062818 Msa1119910:CDS
GTATTATGAACTTGTTGAGG+TGG 0.581897 7_3:+69063502 None:intergenic
GCACTGCTTTAATTTGCTCA+GGG 0.582835 7_3:+69061206 None:intergenic
TTGTTGTGAAAGAAAGAGTG+TGG 0.583509 7_3:+69063190 None:intergenic
TATTCTATCTGATCTTGGCC+TGG 0.585085 7_3:+69061046 None:intergenic
TAGCTTAATCTGTAGGGTGG+AGG 0.585513 7_3:-69061025 Msa1119910:three_prime_UTR
AATGGGACTGTTGTTACTGG+TGG 0.588156 7_3:-69062719 Msa1119910:CDS
TGTGTGTGAATAAAGGAAGA+GGG 0.589789 7_3:+69063679 None:intergenic
TATTCATTCAATTCAAACCA+TGG 0.589917 7_3:+69061164 None:intergenic
GTGAATAAAGGAAGAGGGAA+TGG 0.590695 7_3:+69063684 None:intergenic
GGGACCCACCCATGAAAACA+GGG 0.591270 7_3:+69063071 None:intergenic
TGAAAGCTTGCACTTGCAGA+TGG 0.592228 7_3:+69061929 None:intergenic
CAGAAGGGGAAGAAGAAGAA+GGG 0.596056 7_3:-69062692 Msa1119910:CDS
CTGTTGGAAACAAGAAGAAG+AGG 0.597578 7_3:-69062856 Msa1119910:CDS
TGATGGCTGAGAGGCGCCGG+AGG 0.599553 7_3:-69062652 Msa1119910:CDS
ATTTGTGTGAAGAATGATGA+AGG 0.611302 7_3:+69063616 None:intergenic
ACTTGAAGGAGCTGCTGCAG+CGG 0.611585 7_3:-69062006 Msa1119910:CDS
CAAAGAATTTGATGGCTGAG+AGG 0.613701 7_3:-69062661 Msa1119910:CDS
GAACTGGAATCAACTCCACC+TGG 0.616928 7_3:-69061965 Msa1119910:CDS
ATGGTAGATAGCAAAAGTCC+TGG 0.618329 7_3:+69061559 None:intergenic
ATAGAAAACGAAGCACTGAA+AGG 0.618637 7_3:+69062995 None:intergenic
AGATCCTCCTTGACTCGACA+GGG 0.627926 7_3:+69061878 None:intergenic
AGAAGAGAAGAGAAGCAGCA+AGG 0.628506 7_3:-69063770 None:intergenic
GTTACTGGTGGAGATCAGAA+GGG 0.630933 7_3:-69062707 Msa1119910:CDS
ATTAGATGTGTTCAGAGCCG+AGG 0.631196 7_3:-69061470 Msa1119910:intron
GAATAGCTTAATCTGTAGGG+TGG 0.631855 7_3:-69061028 Msa1119910:three_prime_UTR
TTGAATTTATGATTAAGTGG+TGG 0.634675 7_3:-69060947 Msa1119910:three_prime_UTR
GTGGGGCGTTGGAGATTCCG+AGG 0.636781 7_3:-69062886 Msa1119910:CDS
GAAAACGAAGCACTGAAAGG+TGG 0.640228 7_3:+69062998 None:intergenic
CCTGCTGAACATCCAATCCA+AGG 0.640256 7_3:+69061521 None:intergenic
TTAGGTGTGGACCATGAAGA+AGG 0.641283 7_3:+69063433 None:intergenic
TTGACTCGACAGGGAAGGGT+CGG 0.645022 7_3:+69061887 None:intergenic
TGGAAACAAGAAGAAGAGGA+AGG 0.647520 7_3:-69062852 Msa1119910:CDS
GCAGTGCTGTTGGATTCAGC+GGG 0.652187 7_3:-69061190 Msa1119910:CDS
TGTTGTGCCTAAGATTAGCA+AGG 0.656988 7_3:-69062594 Msa1119910:intron
ACGCTTCTGAAACAGCGTAG+TGG 0.657092 7_3:+69062910 None:intergenic
TTACTGGTGGAGATCAGAAG+GGG 0.669179 7_3:-69062706 Msa1119910:CDS
GCTGTTTCAGAAGCGTCGTG+GGG 0.679817 7_3:-69062903 Msa1119910:CDS
CCTTCCCTGTCGAGTCAAGG+AGG 0.679867 7_3:-69061882 Msa1119910:CDS
AGAGTATTATGAACTTGTTG+AGG 0.689686 7_3:+69063499 None:intergenic
GGACCCACCCATGAAAACAG+GGG 0.693712 7_3:+69063072 None:intergenic
GCAGCATCGAGTTCAAGACT+CGG 0.694688 7_3:+69063028 None:intergenic
GGTTGCAGCAATGAGCCAGG+TGG 0.695323 7_3:+69061950 None:intergenic
GCATCGAGTTCAAGACTCGG+AGG 0.717250 7_3:+69063031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTACAAAATATTGTGAAAT+TGG - chr7_3:69062120-69062139 Msa1119910:intron 15.0%
!!! TTTTTGAATATGTATTTTGT+TGG - chr7_3:69062352-69062371 Msa1119910:intron 15.0%
!!! TTTGAAAATGGATTCTTTAT+GGG - chr7_3:69061561-69061580 Msa1119910:CDS 20.0%
!! AATGATTTGAATAATTCCAA+TGG - chr7_3:69061939-69061958 Msa1119910:CDS 20.0%
!! ATGATTTGAATAATTCCAAT+GGG - chr7_3:69061940-69061959 Msa1119910:CDS 20.0%
!!! TTCAAAACGTTTTTTTTACA+AGG + chr7_3:69062148-69062167 None:intergenic 20.0%
!! GATTTCTATTATTCAAATCA+AGG + chr7_3:69062303-69062322 None:intergenic 20.0%
!! TTGAATAATAGAAATCATGA+AGG - chr7_3:69062307-69062326 Msa1119910:intron 20.0%
!! TGAATAATAGAAATCATGAA+GGG - chr7_3:69062308-69062327 Msa1119910:intron 20.0%
!!! ATTAGTCACCAAAAATTTTA+AGG + chr7_3:69062489-69062508 None:intergenic 20.0%
!!! AAGTAAAACATGCTAATTTT+GGG - chr7_3:69062591-69062610 Msa1119910:intron 20.0%
!!! TATTTTCATTTGTTCATAGA+TGG - chr7_3:69062614-69062633 Msa1119910:CDS 20.0%
!! CAAACAAAAATTATTACCTT+GGG + chr7_3:69062861-69062880 None:intergenic 20.0%
!! ATATAAGAAAGGTTTATGAT+TGG + chr7_3:69063273-69063292 None:intergenic 20.0%
!! TTGTTGAATTTATGATTAAG+TGG - chr7_3:69063726-69063745 Msa1119910:intron 20.0%
! TTTATCTTGTGTGTGAATAA+AGG + chr7_3:69061007-69061026 None:intergenic 25.0%
!! TGGATTTGAAATTGAATCTA+TGG + chr7_3:69061469-69061488 None:intergenic 25.0%
!! GTTTGAAAATGGATTCTTTA+TGG - chr7_3:69061560-69061579 Msa1119910:CDS 25.0%
! AATTATGATTCTGATGAGAA+TGG - chr7_3:69061915-69061934 Msa1119910:CDS 25.0%
!!! TCTATCAAGGTTTTAAATTG+CGG - chr7_3:69062179-69062198 Msa1119910:intron 25.0%
! TTGATCAACAAAATACACAT+TGG - chr7_3:69062417-69062436 Msa1119910:intron 25.0%
!! TACTCAAGAACTAATTTTAC+TGG - chr7_3:69062463-69062482 Msa1119910:intron 25.0%
!!! TTTACTGGCCTTAAAATTTT+TGG - chr7_3:69062478-69062497 Msa1119910:intron 25.0%
!!! AGTTTTTAATTACCACACAA+AGG + chr7_3:69062567-69062586 None:intergenic 25.0%
! TGTGTGGTAATTAAAAACTT+AGG - chr7_3:69062568-69062587 Msa1119910:intron 25.0%
!! GAAGTAAAACATGCTAATTT+TGG - chr7_3:69062590-69062609 Msa1119910:intron 25.0%
! GCAAACAAAAATTATTACCT+TGG + chr7_3:69062862-69062881 None:intergenic 25.0%
! TTTCATATTGACAAGTAACA+TGG - chr7_3:69062953-69062972 Msa1119910:CDS 25.0%
!!! TTCTTGTTTCTGAAATTTAC+AGG - chr7_3:69063035-69063054 Msa1119910:CDS 25.0%
! ACAAAACATATGAATGTTGA+CGG + chr7_3:69063088-69063107 None:intergenic 25.0%
! ATCACGGTAAAATATAAGAA+AGG + chr7_3:69063284-69063303 None:intergenic 25.0%
!!! ATTTCGAGTTCACTAATTAT+TGG - chr7_3:69063367-69063386 Msa1119910:CDS 25.0%
! TATTCATTCAATTCAAACCA+TGG + chr7_3:69063515-69063534 None:intergenic 25.0%
! ATAGAATAGCTTAATCTGTA+GGG - chr7_3:69063645-69063664 Msa1119910:five_prime_UTR 25.0%
!! TCTTATACTTTTCTCAATTG+TGG - chr7_3:69063681-69063700 Msa1119910:five_prime_UTR 25.0%
! TTGAATTTATGATTAAGTGG+TGG - chr7_3:69063729-69063748 Msa1119910:intron 25.0%
AATGATGAAGGAGAGAAAAA+GGG + chr7_3:69061051-69061070 None:intergenic 30.0%
ATTTGTGTGAAGAATGATGA+AGG + chr7_3:69061063-69061082 None:intergenic 30.0%
! AAAAAGAGAAAAGTGTGAAG+AGG + chr7_3:69061118-69061137 None:intergenic 30.0%
!! AGAGTATTATGAACTTGTTG+AGG + chr7_3:69061180-69061199 None:intergenic 30.0%
ATAATACTCTCACTATACCT+TGG - chr7_3:69061190-69061209 Msa1119910:CDS 30.0%
! TTGTTGTTGTTGTTGTTATC+AGG + chr7_3:69061351-69061370 None:intergenic 30.0%
ATGAGAAAATTGTCTGGTAA+GGG + chr7_3:69061429-69061448 None:intergenic 30.0%
! AATCTATGGTGTTTGTGTTT+TGG + chr7_3:69061455-69061474 None:intergenic 30.0%
TACCAATAACCCATTTGAAA+TGG - chr7_3:69061536-69061555 Msa1119910:CDS 30.0%
! ACCAATAACCCATTTGAAAT+GGG - chr7_3:69061537-69061556 Msa1119910:CDS 30.0%
TTTCAAACCCCATTTCAAAT+GGG + chr7_3:69061548-69061567 None:intergenic 30.0%
! TTTTCAAACCCCATTTCAAA+TGG + chr7_3:69061549-69061568 None:intergenic 30.0%
! TTTGAAATGGGGTTTGAAAA+TGG - chr7_3:69061549-69061568 Msa1119910:CDS 30.0%
! AAGCATATTAGCTTCTATCA+AGG - chr7_3:69062166-69062185 Msa1119910:intron 30.0%
CATTAACATAAGCAACAAGA+TGG + chr7_3:69062530-69062549 None:intergenic 30.0%
! CATCTTGTTGCTTATGTTAA+TGG - chr7_3:69062528-69062547 Msa1119910:intron 30.0%
TAATAATCTTCACAACGAAC+TGG - chr7_3:69062695-69062714 Msa1119910:CDS 30.0%
CTTACAACAAATTTGTGCAA+TGG + chr7_3:69062884-69062903 None:intergenic 30.0%
TTGTAAGATATGTCAGATTG+CGG - chr7_3:69062897-69062916 Msa1119910:CDS 30.0%
ATTGATGCAAATCATTTGCA+TGG - chr7_3:69062989-69063008 Msa1119910:CDS 30.0%
AATCATTTGCATGGTAATTG+AGG - chr7_3:69062998-69063017 Msa1119910:CDS 30.0%
!! TTGTTTCTGAAATTTACAGG+TGG - chr7_3:69063038-69063057 Msa1119910:CDS 30.0%
! GATGTTTATATGCCTCTTTT+AGG - chr7_3:69063314-69063333 Msa1119910:CDS 30.0%
CACAAAAAACAACCTAAAAG+AGG + chr7_3:69063329-69063348 None:intergenic 30.0%
! ATTTCTACCATTTGAAGTTC+TGG - chr7_3:69063390-69063409 Msa1119910:CDS 30.0%
ATAAAATGCTACCCTTATAG+AGG - chr7_3:69063532-69063551 Msa1119910:exon 30.0%
TAAGCTATTCTATCTGATCT+TGG + chr7_3:69063638-69063657 None:intergenic 30.0%
GATAGAATAGCTTAATCTGT+AGG - chr7_3:69063644-69063663 Msa1119910:five_prime_UTR 30.0%
TGTGTGTGAATAAAGGAAGA+GGG + chr7_3:69061000-69061019 None:intergenic 35.0%
TTGTGTGTGAATAAAGGAAG+AGG + chr7_3:69061001-69061020 None:intergenic 35.0%
GAATGATGAAGGAGAGAAAA+AGG + chr7_3:69061052-69061071 None:intergenic 35.0%
!!! TCTTTTTTGTCTCTCTGTCA+TGG - chr7_3:69061131-69061150 Msa1119910:three_prime_UTR 35.0%
!! GTATTATGAACTTGTTGAGG+TGG + chr7_3:69061177-69061196 None:intergenic 35.0%
!! GATTCTTGTTGTTGTTGTTG+TGG + chr7_3:69061222-69061241 None:intergenic 35.0%
AACAAGAATCACCTTCTTCA+TGG - chr7_3:69061232-69061251 Msa1119910:CDS 35.0%
CATTGCAATAGCTATTGCTA+TGG - chr7_3:69061293-69061312 Msa1119910:intron 35.0%
! TTGTTGTTGTTATCAGGTTC+GGG + chr7_3:69061345-69061364 None:intergenic 35.0%
! GTTGTTGTTGTTATCAGGTT+CGG + chr7_3:69061346-69061365 None:intergenic 35.0%
CATGAGAAAATTGTCTGGTA+AGG + chr7_3:69061430-69061449 None:intergenic 35.0%
TTGTTGTGAAAGAAAGAGTG+TGG + chr7_3:69061489-69061508 None:intergenic 35.0%
! CCAATAACCCATTTGAAATG+GGG - chr7_3:69061538-69061557 Msa1119910:CDS 35.0%
! TTCAAATTCCCCTGTTTTCA+TGG - chr7_3:69061596-69061615 Msa1119910:CDS 35.0%
! TCAAATTCCCCTGTTTTCAT+GGG - chr7_3:69061597-69061616 Msa1119910:CDS 35.0%
!! ATAGAAAACGAAGCACTGAA+AGG + chr7_3:69061684-69061703 None:intergenic 35.0%
ACTTCCTGCAAAGAATTTGA+TGG - chr7_3:69062007-69062026 Msa1119910:CDS 35.0%
TATCATTGAGTTTCTTCCTC+CGG + chr7_3:69062043-69062062 None:intergenic 35.0%
ATGATAGGTTGTACATGCTT+AGG - chr7_3:69062057-69062076 Msa1119910:intron 35.0%
TTCCATACCTTGCTAATCTT+AGG + chr7_3:69062092-69062111 None:intergenic 35.0%
TCATTTGTTCATAGATGGAC+AGG - chr7_3:69062619-69062638 Msa1119910:CDS 35.0%
CATTTGTTCATAGATGGACA+GGG - chr7_3:69062620-69062639 Msa1119910:CDS 35.0%
!! ACCTTGGGAGATTGATTTTT+GGG + chr7_3:69062846-69062865 None:intergenic 35.0%
!! TACCTTGGGAGATTGATTTT+TGG + chr7_3:69062847-69062866 None:intergenic 35.0%
!! ACTTTTGCTATCTACCATGA+GGG - chr7_3:69063122-69063141 Msa1119910:CDS 35.0%
! GCTGTTATCAGTTGTTTCAA+TGG - chr7_3:69063177-69063196 Msa1119910:CDS 35.0%
TGGAGAAAGAACTAATACCT+CGG + chr7_3:69063226-69063245 None:intergenic 35.0%
AACATCAATTGCAAGCATCA+CGG + chr7_3:69063300-69063319 None:intergenic 35.0%
ATCAACACCAGAACTTCAAA+TGG + chr7_3:69063400-69063419 None:intergenic 35.0%
TACGGTTAGTACCTCTATAA+GGG + chr7_3:69063546-69063565 None:intergenic 35.0%
CTTCTTGTTCCTGTTAGTAA+AGG - chr7_3:69063598-69063617 Msa1119910:five_prime_UTR 35.0%
GTGAATAAAGGAAGAGGGAA+TGG + chr7_3:69060995-69061014 None:intergenic 40.0%
!! TGAACTTGTTGAGGTGGTAA+GGG + chr7_3:69061171-69061190 None:intergenic 40.0%
!! ATGAACTTGTTGAGGTGGTA+AGG + chr7_3:69061172-69061191 None:intergenic 40.0%
!! TTTAGGTTCTGAGTTAGGTG+TGG + chr7_3:69061259-69061278 None:intergenic 40.0%
!! TGGTGTTTAGGTTCTGAGTT+AGG + chr7_3:69061264-69061283 None:intergenic 40.0%
! ATGTCTTGTTCGTGGTGTTT+AGG + chr7_3:69061276-69061295 None:intergenic 40.0%
! CTATTGCAATGTCTTGTTCG+TGG + chr7_3:69061284-69061303 None:intergenic 40.0%
TGGTGCATGAGAAAATTGTC+TGG + chr7_3:69061435-69061454 None:intergenic 40.0%
!! CCCCATTTCAAATGGGTTAT+TGG + chr7_3:69061541-69061560 None:intergenic 40.0%
AGGAAACTCAGAAGCTGAAA+GGG + chr7_3:69061628-69061647 None:intergenic 40.0%
! TGATGATGTTGTTGTGGTTG+TGG + chr7_3:69061726-69061745 None:intergenic 40.0%
! TGCTGATGATGATGTTGTTG+TGG + chr7_3:69061732-69061751 None:intergenic 40.0%
CTGTTGGAAACAAGAAGAAG+AGG - chr7_3:69061820-69061839 Msa1119910:intron 40.0%
TGGAAACAAGAAGAAGAGGA+AGG - chr7_3:69061824-69061843 Msa1119910:intron 40.0%
TCAGCCATCAAATTCTTTGC+AGG + chr7_3:69062014-69062033 None:intergenic 40.0%
! CAAAGAATTTGATGGCTGAG+AGG - chr7_3:69062015-69062034 Msa1119910:CDS 40.0%
GGAGGAAGAAACTCAATGAT+AGG - chr7_3:69062042-69062061 Msa1119910:CDS 40.0%
TGTTGTGCCTAAGATTAGCA+AGG - chr7_3:69062082-69062101 Msa1119910:intron 40.0%
TGCCTAAGATTAGCAAGGTA+TGG - chr7_3:69062087-69062106 Msa1119910:intron 40.0%
ATGTTATGTGACCGCGATTA+TGG + chr7_3:69062268-69062287 None:intergenic 40.0%
! GCGGTCACATAACATTTTTG+TGG - chr7_3:69062273-69062292 Msa1119910:intron 40.0%
GTCTTCACACAAGCATTTCA+AGG + chr7_3:69062388-69062407 None:intergenic 40.0%
AACGTTGCATTTCCTTTGTG+TGG - chr7_3:69062552-69062571 Msa1119910:intron 40.0%
AGATGCAGTTGACTACTTGA+AGG - chr7_3:69062656-69062675 Msa1119910:CDS 40.0%
!! CCTTGGGAGATTGATTTTTG+GGG + chr7_3:69062845-69062864 None:intergenic 40.0%
TACAGGTGGAAGTTAGAGTA+AGG - chr7_3:69063052-69063071 Msa1119910:CDS 40.0%
ACAGGTGGAAGTTAGAGTAA+GGG - chr7_3:69063053-69063072 Msa1119910:CDS 40.0%
TGGAAGTTAGAGTAAGGGAA+GGG - chr7_3:69063058-69063077 Msa1119910:CDS 40.0%
ATGGTAGATAGCAAAAGTCC+TGG + chr7_3:69063120-69063139 None:intergenic 40.0%
!! GACTTTTGCTATCTACCATG+AGG - chr7_3:69063121-69063140 Msa1119910:CDS 40.0%
GGATATGTTTGAGTGAAGCT+TGG + chr7_3:69063252-69063271 None:intergenic 40.0%
!! GCACTGCTTTAATTTGCTCA+GGG + chr7_3:69063473-69063492 None:intergenic 40.0%
!! AGCACTGCTTTAATTTGCTC+AGG + chr7_3:69063474-69063493 None:intergenic 40.0%
GCAAATTAAAGCAGTGCTGT+TGG - chr7_3:69063476-69063495 Msa1119910:CDS 40.0%
CTACGGTTAGTACCTCTATA+AGG + chr7_3:69063547-69063566 None:intergenic 40.0%
AGACACAGACCTTTACTAAC+AGG + chr7_3:69063610-69063629 None:intergenic 40.0%
TATTCTATCTGATCTTGGCC+TGG + chr7_3:69063633-69063652 None:intergenic 40.0%
GAATAGCTTAATCTGTAGGG+TGG - chr7_3:69063648-69063667 Msa1119910:five_prime_UTR 40.0%
GAGAGACACTACACAACACT+TGG - chr7_3:69060946-69060965 Msa1119910:three_prime_UTR 45.0%
ATAAAGGAAGAGGGAATGGC+TGG + chr7_3:69060991-69061010 None:intergenic 45.0%
TGTTGTTGTGGTTCAGTCCA+AGG + chr7_3:69061210-69061229 None:intergenic 45.0%
TTAGGTGTGGACCATGAAGA+AGG + chr7_3:69061246-69061265 None:intergenic 45.0%
GCAATAGCTATTGCTATGGC+TGG - chr7_3:69061297-69061316 Msa1119910:intron 45.0%
! CAGGTTCGGGTTTGAAGAAA+GGG + chr7_3:69061332-69061351 None:intergenic 45.0%
! TCAGGTTCGGGTTTGAAGAA+AGG + chr7_3:69061333-69061352 None:intergenic 45.0%
! AATTCCCCTGTTTTCATGGG+TGG - chr7_3:69061600-69061619 Msa1119910:CDS 45.0%
! ATTCCCCTGTTTTCATGGGT+GGG - chr7_3:69061601-69061620 Msa1119910:CDS 45.0%
GAGGAAACTCAGAAGCTGAA+AGG + chr7_3:69061629-69061648 None:intergenic 45.0%
!! GAAAACGAAGCACTGAAAGG+TGG + chr7_3:69061681-69061700 None:intergenic 45.0%
TTTCCAACAGTCTCCAACCT+CGG + chr7_3:69061810-69061829 None:intergenic 45.0%
AGAGGAAGGTTGAGAAGAGT+TGG - chr7_3:69061838-69061857 Msa1119910:CDS 45.0%
GAGGAAGGTTGAGAAGAGTT+GGG - chr7_3:69061839-69061858 Msa1119910:CDS 45.0%
GAGAAGAGTTGGGAAGAAGA+AGG - chr7_3:69061849-69061868 Msa1119910:CDS 45.0%
AGTTGGGAAGAAGAAGGAAG+TGG - chr7_3:69061855-69061874 Msa1119910:CDS 45.0%
TCCAATGGGACTGTTGTTAC+TGG - chr7_3:69061954-69061973 Msa1119910:CDS 45.0%
ACCAGTAACAACAGTCCCAT+TGG + chr7_3:69061958-69061977 None:intergenic 45.0%
AATGGGACTGTTGTTACTGG+TGG - chr7_3:69061957-69061976 Msa1119910:CDS 45.0%
TGTTACTGGTGGAGATCAGA+AGG - chr7_3:69061968-69061987 Msa1119910:CDS 45.0%
GTTACTGGTGGAGATCAGAA+GGG - chr7_3:69061969-69061988 Msa1119910:CDS 45.0%
TTACTGGTGGAGATCAGAAG+GGG - chr7_3:69061970-69061989 Msa1119910:CDS 45.0%
TCAGAAGGGGAAGAAGAAGA+AGG - chr7_3:69061983-69062002 Msa1119910:CDS 45.0%
CAGAAGGGGAAGAAGAAGAA+GGG - chr7_3:69061984-69062003 Msa1119910:CDS 45.0%
TGCTGATGTAGCCATAATCG+CGG - chr7_3:69062254-69062273 Msa1119910:intron 45.0%
ATGGACAGGGCTTCAATACT+CGG - chr7_3:69062633-69062652 Msa1119910:CDS 45.0%
TGAAAGCTTGCACTTGCAGA+TGG + chr7_3:69062750-69062769 None:intergenic 45.0%
GTCAAGGAGGATCTATATCC+TGG - chr7_3:69062807-69062826 Msa1119910:CDS 45.0%
CCCCAAAAATCAATCTCCCA+AGG - chr7_3:69062842-69062861 Msa1119910:CDS 45.0%
GTGGAAGTTAGAGTAAGGGA+AGG - chr7_3:69063057-69063076 Msa1119910:CDS 45.0%
! ATGTTTTGTACTCGCAGACC+AGG - chr7_3:69063099-69063118 Msa1119910:CDS 45.0%
AAGGTTATCCAAAGCCCTCA+TGG + chr7_3:69063139-69063158 None:intergenic 45.0%
!! ATGAGGGCTTTGGATAACCT+TGG - chr7_3:69063138-69063157 Msa1119910:CDS 45.0%
!! GGCTTTGGATAACCTTGGAT+TGG - chr7_3:69063143-69063162 Msa1119910:CDS 45.0%
ATTAGATGTGTTCAGAGCCG+AGG - chr7_3:69063206-69063225 Msa1119910:CDS 45.0%
GTTTGAGTGAAGCTTGGAAC+TGG + chr7_3:69063246-69063265 None:intergenic 45.0%
TAGTAAAGGTCTGTGTCTCC+AGG - chr7_3:69063612-69063631 Msa1119910:five_prime_UTR 45.0%
TAGCTTAATCTGTAGGGTGG+AGG - chr7_3:69063651-69063670 Msa1119910:five_prime_UTR 45.0%
! AATGGCTGGTTGAGTGAGTG+AGG + chr7_3:69060977-69060996 None:intergenic 50.0%
! GCAGCATCGAGTTCAAGACT+CGG + chr7_3:69061651-69061670 None:intergenic 50.0%
!! GAAGCACTGAAAGGTGGTAC+TGG + chr7_3:69061675-69061694 None:intergenic 50.0%
TGTGGTTGAGCTAGCTCAAG+AGG + chr7_3:69061708-69061727 None:intergenic 50.0%
!! CGCTTCTGAAACAGCGTAGT+GGG + chr7_3:69061768-69061787 None:intergenic 50.0%
!! ACGCTTCTGAAACAGCGTAG+TGG + chr7_3:69061769-69061788 None:intergenic 50.0%
ATTCCGAGGTTGGAGACTGT+TGG - chr7_3:69061804-69061823 Msa1119910:intron 50.0%
TGGGAAGAAGAAGGAAGTGG+TGG - chr7_3:69061858-69061877 Msa1119910:CDS 50.0%
GAAGAAGAAGGAAGTGGTGG+TGG - chr7_3:69061861-69061880 Msa1119910:CDS 50.0%
GAACTGGAATCAACTCCACC+TGG - chr7_3:69062711-69062730 Msa1119910:CDS 50.0%
! AGATCCTCCTTGACTCGACA+GGG + chr7_3:69062801-69062820 None:intergenic 50.0%
! TAGATCCTCCTTGACTCGAC+AGG + chr7_3:69062802-69062821 None:intergenic 50.0%
TTGGGGCTTAACAAGTCACC+AGG + chr7_3:69062828-69062847 None:intergenic 50.0%
GCTATCTACCATGAGGGCTT+TGG - chr7_3:69063128-69063147 Msa1119910:CDS 50.0%
CCTGCTGAACATCCAATCCA+AGG + chr7_3:69063158-69063177 None:intergenic 50.0%
! CCTTGGATTGGATGTTCAGC+AGG - chr7_3:69063155-69063174 Msa1119910:CDS 50.0%
TCTTAGCAGCAATGCCGAGA+AGG - chr7_3:69063435-69063454 Msa1119910:CDS 50.0%
! TTTGCTCAGGGAGTACATCC+TGG + chr7_3:69063461-69063480 None:intergenic 50.0%
! AGCAGTGCTGTTGGATTCAG+CGG - chr7_3:69063485-69063504 Msa1119910:CDS 50.0%
ACAGCAAGCTACAGCAGCTA+CGG + chr7_3:69063564-69063583 None:intergenic 50.0%
ATCTGTAGGGTGGAGGAGAT+AGG - chr7_3:69063658-69063677 Msa1119910:five_prime_UTR 50.0%
GGACCCACCCATGAAAACAG+GGG + chr7_3:69061607-69061626 None:intergenic 55.0%
GGGACCCACCCATGAAAACA+GGG + chr7_3:69061608-69061627 None:intergenic 55.0%
AGGGACCCACCCATGAAAAC+AGG + chr7_3:69061609-69061628 None:intergenic 55.0%
GCATCGAGTTCAAGACTCGG+AGG + chr7_3:69061648-69061667 None:intergenic 55.0%
!! ACGCTGTTTCAGAAGCGTCG+TGG - chr7_3:69061771-69061790 Msa1119910:intron 55.0%
!! CGCTGTTTCAGAAGCGTCGT+GGG - chr7_3:69061772-69061791 Msa1119910:intron 55.0%
!! GCTGTTTCAGAAGCGTCGTG+GGG - chr7_3:69061773-69061792 Msa1119910:intron 55.0%
!! GAAGAAGGAAGTGGTGGTGG+TGG - chr7_3:69061864-69061883 Msa1119910:CDS 55.0%
! ATTTGATGGCTGAGAGGCGC+CGG - chr7_3:69062021-69062040 Msa1119910:CDS 55.0%
ACTTGAAGGAGCTGCTGCAG+CGG - chr7_3:69062670-69062689 Msa1119910:CDS 55.0%
GATGGTTGCAGCAATGAGCC+AGG + chr7_3:69062732-69062751 None:intergenic 55.0%
! TTGACTCGACAGGGAAGGGT+CGG + chr7_3:69062792-69062811 None:intergenic 55.0%
! CTCCTTGACTCGACAGGGAA+GGG + chr7_3:69062796-69062815 None:intergenic 55.0%
! GGAGTACATCCTGGCCTTCT+CGG + chr7_3:69063452-69063471 None:intergenic 55.0%
! GCAGTGCTGTTGGATTCAGC+GGG - chr7_3:69063486-69063505 Msa1119910:CDS 55.0%
!! TTGGATTCAGCGGGCTACCA+TGG - chr7_3:69063495-69063514 Msa1119910:CDS 55.0%
! GGCGTTGGAGATTCCGAGGT+TGG - chr7_3:69061794-69061813 Msa1119910:intron 60.0%
GGTTGCAGCAATGAGCCAGG+TGG + chr7_3:69062729-69062748 None:intergenic 60.0%
!! TCGGCGGAGTTGGTGTCAAC+GGG + chr7_3:69062773-69062792 None:intergenic 60.0%
!! GTCGGCGGAGTTGGTGTCAA+CGG + chr7_3:69062774-69062793 None:intergenic 60.0%
GACCCTTCCCTGTCGAGTCA+AGG - chr7_3:69062791-69062810 Msa1119910:CDS 60.0%
! CCTCCTTGACTCGACAGGGA+AGG + chr7_3:69062797-69062816 None:intergenic 60.0%
CCTTCCCTGTCGAGTCAAGG+AGG - chr7_3:69062794-69062813 Msa1119910:CDS 60.0%
!! TCAGAAGCGTCGTGGGGCGT+TGG - chr7_3:69061779-69061798 Msa1119910:intron 65.0%
!! GTGGGGCGTTGGAGATTCCG+AGG - chr7_3:69061790-69061809 Msa1119910:intron 65.0%
ACTCGACAGGGAAGGGTCGG+CGG + chr7_3:69062789-69062808 None:intergenic 65.0%
GCAGCAATGCCGAGAAGGCC+AGG - chr7_3:69063440-69063459 Msa1119910:CDS 65.0%
!! TGATGGCTGAGAGGCGCCGG+AGG - chr7_3:69062024-69062043 Msa1119910:CDS 70.0%
CAGGGAAGGGTCGGCGGAGT+TGG + chr7_3:69062783-69062802 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 69060915 69063783 69060915 ID=Msa1119910;Name=Msa1119910
chr7_3 mRNA 69060915 69063783 69060915 ID=Msa1119910-mRNA-1;Parent=Msa1119910;Name=Msa1119910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=212|0.75|0.8|1|0.75|0.6|5|256|479
chr7_3 exon 69060915 69061254 69060915 ID=Msa1119910-mRNA-1:exon:17423;Parent=Msa1119910-mRNA-1
chr7_3 exon 69061471 69061641 69061471 ID=Msa1119910-mRNA-1:exon:17422;Parent=Msa1119910-mRNA-1
chr7_3 exon 69061835 69062065 69061835 ID=Msa1119910-mRNA-1:exon:17421;Parent=Msa1119910-mRNA-1
chr7_3 exon 69062595 69063706 69062595 ID=Msa1119910-mRNA-1:exon:17420;Parent=Msa1119910-mRNA-1
chr7_3 exon 69063730 69063783 69063730 ID=Msa1119910-mRNA-1:exon:17419;Parent=Msa1119910-mRNA-1
chr7_3 five_prime_UTR 69063730 69063783 69063730 ID=Msa1119910-mRNA-1:five_prime_utr;Parent=Msa1119910-mRNA-1
chr7_3 five_prime_UTR 69063549 69063706 69063549 ID=Msa1119910-mRNA-1:five_prime_utr;Parent=Msa1119910-mRNA-1
chr7_3 CDS 69062595 69063548 69062595 ID=Msa1119910-mRNA-1:cds;Parent=Msa1119910-mRNA-1
chr7_3 CDS 69061835 69062065 69061835 ID=Msa1119910-mRNA-1:cds;Parent=Msa1119910-mRNA-1
chr7_3 CDS 69061471 69061641 69061471 ID=Msa1119910-mRNA-1:cds;Parent=Msa1119910-mRNA-1
chr7_3 CDS 69061171 69061254 69061171 ID=Msa1119910-mRNA-1:cds;Parent=Msa1119910-mRNA-1
chr7_3 three_prime_UTR 69060915 69061170 69060915 ID=Msa1119910-mRNA-1:three_prime_utr;Parent=Msa1119910-mRNA-1
Gene Sequence

>Msa1119910

ATGGAGAGATACACGTTACCCTTACCACCTCAACAAGTTCATAATACTCTCACTATACCTTGGACTGAACCACAACAACAACAACAAGAATCACCTTCTTCATGGTCCACACCTAACTCAGAACCTAAACACCACGAACAAGACATTGCAATAGCTATTGCTATGGCTGGTTCTTCTATCCCTTTCTTCAAACCCGAACCTGATAACAACAACAACAACAACAACAACTTCTACAACAACAACAACAACAACATTGTTAATGTCAATAATGTTATTCCCTTACCAGACAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTTCACAACAATAACAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAACAACAACACTTCAAATTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCACAACCACAACAACATCATCATCAGCAACAACAACAACAACCCACTACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCGAGGTTGGAGACTGTTGGAAACAAGAAGAAGAGGAAGGTTGAGAAGAGTTGGGAAGAAGAAGGAAGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGAAATGATTTGAATAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAGAAGGGGAAGAAGAAGAAGGGACTTCCTGCAAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCTAAGATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCACAACGAACTGGAATCAACTCCACCTGGCTCATTGCTGCAACCATCTGCAAGTGCAAGCTTTCACCCGTTGACACCAACTCCGCCGACCCTTCCCTGTCGAGTCAAGGAGGATCTATATCCTGGTGACTTGTTAAGCCCCAAAAATCAATCTCCCAAGGTGGAAGTTAGAGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGCTATCTACCATGAGGGCTTTGGATAACCTTGGATTGGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGATGTGTTCAGAGCCGAGCAATGCCGAGAAGGCCAGGATGTACTCCCTGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACCATGGTTTGAATTGA
Protein sequence

>Msa1119910

MERYTLPLPPQQVHNTLTIPWTEPQQQQQESPSSWSTPNSEPKHHEQDIAIAIAMAGSSIPFFKPEPDNNNNNNNNFYNNNNNNIVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNNNYFFNNNNTNNPFEMGFENGFFMGNNNTSNSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQPQQHHHQQQQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQCREGQDVLPEQIKAVLLDSAGYHGLN*