AlfalfaGEDB | Msa1118040

M. sativa cultivar zhongmu-4 / Msa1118040

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118040	RHN47590.1	98.756	402	5	0	1	402	1	402	0.0	824

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118040	A0A396H2W2	98.756	402	5	0	1	402	1	402	0.0	824

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005000	Msa1118040	-0.830084	3.583381e-55	-8.615850e-47
Msa0010770	Msa1118040	0.813531	2.441727e-51	-8.615850e-47
Msa0022750	Msa1118040	-0.806660	7.386517e-50	-8.615850e-47
Msa0040620	Msa1118040	0.800570	1.354468e-48	-8.615850e-47
Msa0053050	Msa1118040	-0.804741	1.867241e-49	-8.615850e-47
Msa0096580	Msa1118040	0.802551	5.316750e-49	-8.615850e-47
Msa0098390	Msa1118040	-0.827975	1.162679e-54	-8.615850e-47
Msa0133720	Msa1118040	0.800042	1.734766e-48	-8.615850e-47
Msa0138520	Msa1118040	0.800021	1.752029e-48	-8.615850e-47
Msa0187430	Msa1118040	0.979782	9.921379e-149	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118040	MtrunA17_Chr7g0254631	98.756	402	5	0	1	402	1	402	0.0	824
Msa1118040	MtrunA17_Chr3g0131131	38.544	371	214	8	29	396	52	411	3.47e-73	243

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1118040	AT2G40980.1	69.110	191	58	1	212	402	131	320	6.64e-89	281
Msa1118040	AT2G40980.1	67.939	131	40	1	3	131	1	131	3.56e-40	151

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Find 227 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCTATCGCTAATGGA+AGG	0.633589	7_3:+66579072	Msa1118040:CDS
AAAATTTGATTATGCATTAG+AGG	0.346390	7_3:+66578842	Msa1118040:CDS
AAACTTGGGAATGCAAACTG+GGG	0.727261	7_3:+66579488	Msa1118040:CDS
AAATCTTCAACAGAGTGCTT+GGG	0.521067	7_3:-66579575	None:intergenic
AAATTCATATCTTCCCAAGC+TGG	0.531371	7_3:-66579939	None:intergenic
AAATTTGATTATGCATTAGA+GGG	0.512978	7_3:+66578843	Msa1118040:CDS
AACAGAGTGCTTGGGCATTC+CGG	0.431857	7_3:-66579567	None:intergenic
AACAGATCTGTTTCTATATG+TGG	0.425148	7_3:+66579893	Msa1118040:three_prime_UTR
AACAGCTAGACCTCTGATAT+CGG	0.430946	7_3:-66579189	None:intergenic
AACAGTTGCAGAAATGGTAG+AGG	0.587170	7_3:+66580157	Msa1118040:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAATTTAAAGAGGGATGCT+AGG	-	chr7_3:66574662-66574681	None:intergenic	30.0%
AAAACACAGCTTAGAATAGA+CGG	-	chr7_3:66574850-66574869	None:intergenic	30.0%
AGAGTCAAAACTTAGTCAAA+GGG	-	chr7_3:66575262-66575281	None:intergenic	30.0%
TAGAGTCAAAACTTAGTCAA+AGG	-	chr7_3:66575263-66575282	None:intergenic	30.0%
CGCAAGTTAAATTGTATGAT+CGG	-	chr7_3:66575832-66575851	None:intergenic	30.0%
CTATACTACAGATCTATTAG+TGG	+	chr7_3:66576142-66576161	Msa1118040:intron	30.0%
TATTTAGTTAAAAGCGGCTA+TGG	-	chr7_3:66576178-66576197	None:intergenic	30.0%
TGATTACAATGTGAAAGTGA+TGG	+	chr7_3:66576236-66576255	Msa1118040:intron	30.0%
AAAGTTCAATATTTCTCCAG+GGG	+	chr7_3:66576425-66576444	Msa1118040:intron	30.0%
TGTCTTAACAGTGATAAACA+GGG	-	chr7_3:66576991-66577010	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	66574610	66581284	66574610	ID=Msa1118040;Name=Msa1118040
chr7_3	mRNA	66574610	66581284	66574610	ID=Msa1118040-mRNA-1;Parent=Msa1118040;Name=Msa1118040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=152\|0\|0.66\|0.66\|1\|1\|3\|1431\|412
chr7_3	exon	66574610	66574768	66574610	ID=Msa1118040-mRNA-1:exon:16107;Parent=Msa1118040-mRNA-1
chr7_3	exon	66578147	66578152	66578147	ID=Msa1118040-mRNA-1:exon:16108;Parent=Msa1118040-mRNA-1
chr7_3	exon	66578628	66581284	66578628	ID=Msa1118040-mRNA-1:exon:16109;Parent=Msa1118040-mRNA-1
chr7_3	five_prime_UTR	66574610	66574761	66574610	ID=Msa1118040-mRNA-1:five_prime_utr;Parent=Msa1118040-mRNA-1
chr7_3	CDS	66574762	66574768	66574762	ID=Msa1118040-mRNA-1:cds;Parent=Msa1118040-mRNA-1
chr7_3	CDS	66578147	66578152	66578147	ID=Msa1118040-mRNA-1:cds;Parent=Msa1118040-mRNA-1
chr7_3	CDS	66578628	66579853	66578628	ID=Msa1118040-mRNA-1:cds;Parent=Msa1118040-mRNA-1
chr7_3	three_prime_UTR	66579854	66581284	66579854	ID=Msa1118040-mRNA-1:three_prime_utr;Parent=Msa1118040-mRNA-1

Gene Sequence

>Msa1118040

ATGCAAGTCGACGGTAGATCCCCAGACCAGGAATCAATTGGGTCTGGGACAAAGAGGTCCAGTGTGTCATCTGGTGGTAGGTCTCGGAATCGGAAGGAGTTTTTCTATAAATTTGTTGATAGTGACGGTCTGAATGAAAAACTTGTAGATTGGTTTGAATCTGTAACAGAAAAATATACATTGAAACAGCAAGCATTTGATGTGCCATTTGAGTTGGTTGAACTTCAAAAATTTGATTATGCATTAGAGGGGATTTCATTTCAGCAGCTCACACGCATGCCTAATGCTGTTCATGCTTCTACATCTGAAGCTGTAGAAGCAACAGCTTGTCTTGCTATTGAAGATTTTCTACATGCTGGTATTAAGGGCTTGTGGGAGGCATTTTGGAGTCAAGATGAGCCTATGCCTTTTTCTGCGGCTTGTTTGTATAATGCTAACATGAAGTTCTATCAGGCTGAAAATGCTATCGCTAATGGAAGGCTTGGAGGTCTTTGTGGCACTGGTATATTGCTTAATAATTCTAGACATCCTCATGGGAAATGGGATCATCTCCTTGAATTAACGCTTCTAAGAACCGATATCAGAGGTCTAGCTGTTGGCAGTGACCGCCAGCCTTCTTTACCAGTTCTAGGAGAAGCTCTATTTTATGCTATTCGAATGTTGTTGGCAAGGAGTTTGAGTAGACTGAGTTTCTTTCCGGATCCTAGCACAGTATTTGTTCTTCTAGTTGATTCTCAGTACGGGGGAGTTGTAAAAGTTGAAGGAGATGTAAGTAAGCTCAATTTTGATGTGAATAATGTTTATGAATGTGCTGCTGAGTGGGTACAAAATCATTCTAGAATTTCTGTTTCTCCAATTTATAGAATCTGGAACAAACTTGGGAATGCAAACTGGGGAGATATTGGGGCTCTACAGGTTTTATTTGCAACCTTTCACTGTATTATGCAATATGCCGGAATGCCCAAGCACTCTGTTGAAGATTTAGCTGCCGATCATAGTTCACGTCTTCAAACAAGAAGAATCGAGAGGCAGTTAGGAGATACCACCAGAGTGAATGGAAATGGCCCATTTCAATACCAGCAGCGTAGTGTTTCCCCCGAGATTGTCGAAGTTCAGGATGATTATGTCAAGGTCGATTCCAAGGAGTCAATGAAGTTAGAAGAAGGGTCTATGTTATGGCTGGAGGATTCAGATGGGACAAAAGGGTTATCAAATACAAGAAGTAATCAAAACTGGTGA

Protein sequence

>Msa1118040

MQVDGRSPDQESIGSGTKRSSVSSGGRSRNRKEFFYKFVDSDGLNEKLVDWFESVTEKYTLKQQAFDVPFELVELQKFDYALEGISFQQLTRMPNAVHASTSEAVEATACLAIEDFLHAGIKGLWEAFWSQDEPMPFSAACLYNANMKFYQAENAIANGRLGGLCGTGILLNNSRHPHGKWDHLLELTLLRTDIRGLAVGSDRQPSLPVLGEALFYAIRMLLARSLSRLSFFPDPSTVFVLLVDSQYGGVVKVEGDVSKLNFDVNNVYECAAEWVQNHSRISVSPIYRIWNKLGNANWGDIGALQVLFATFHCIMQYAGMPKHSVEDLAADHSSRLQTRRIERQLGDTTRVNGNGPFQYQQRSVSPEIVEVQDDYVKVDSKESMKLEEGSMLWLEDSDGTKGLSNTRSNQNW*