AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1118040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118040 MtrunA17_Chr7g0254631 98.756 402 5 0 1 402 1 402 0.0 824
Msa1118040 MtrunA17_Chr3g0131131 38.544 371 214 8 29 396 52 411 3.47e-73 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118040 AT2G40980.1 69.110 191 58 1 212 402 131 320 6.64e-89 281
Msa1118040 AT2G40980.1 67.939 131 40 1 3 131 1 131 3.56e-40 151

Find 227 sgRNAs with CRISPR-Local

Find 502 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCATATGTCATAGTTTA+TGG 0.113224 7_3:-66580636 None:intergenic
CAGCCTTCTTTACCAGTTCT+AGG 0.227719 7_3:+66579224 Msa1118040:CDS
GAGTAGACTGAGTTTCTTTC+CGG 0.235522 7_3:+66579292 Msa1118040:CDS
CTTGGGAAGATATGAATTTA+TGG 0.240828 7_3:+66579943 Msa1118040:three_prime_UTR
AGGGCTTGTGGGAGGCATTT+TGG 0.243026 7_3:+66578979 Msa1118040:CDS
ACAATGAACACGATAAAATA+AGG 0.245067 7_3:-66581217 None:intergenic
AATGCAAACTGGGGAGATAT+TGG 0.248944 7_3:+66579497 Msa1118040:CDS
CATTCGTTTGTAAAGATAAT+AGG 0.250132 7_3:+66581099 Msa1118040:three_prime_UTR
TTTCTCCAATTTATAGAATC+TGG 0.256024 7_3:+66579462 Msa1118040:CDS
TTGTTCCAGATTCTATAAAT+TGG 0.266022 7_3:-66579467 None:intergenic
CCCCGAGATTGTCGAAGTTC+AGG 0.286254 7_3:+66579709 Msa1118040:CDS
TACAAACAAGCCGCAGAAAA+AGG 0.289452 7_3:-66579020 None:intergenic
TTTGGGCGGTGAATAAAATA+TGG 0.290513 7_3:+66580797 Msa1118040:three_prime_UTR
ATGTCATAGTTTATGGGATA+TGG 0.306516 7_3:-66580629 None:intergenic
ACAAACTTGGGAATGCAAAC+TGG 0.315758 7_3:+66579486 Msa1118040:CDS
TCCCAGACCCAATTGATTCC+TGG 0.316498 7_3:-66578641 None:intergenic
TTTAAACCTTGAGACTCTAT+TGG 0.319507 7_3:+66580940 Msa1118040:three_prime_UTR
ATGGTAGAGGCAGGCCGATT+TGG 0.323100 7_3:+66580170 Msa1118040:three_prime_UTR
TTTCTACATGCTGGTATTAA+GGG 0.332290 7_3:+66578960 Msa1118040:CDS
CTGCCTCAATTAATTGCCTT+TGG 0.334524 7_3:+66580032 Msa1118040:three_prime_UTR
ATGCAAACTGGGGAGATATT+GGG 0.336399 7_3:+66579498 Msa1118040:CDS
ACTCTATTGGTGACATCTTT+CGG 0.336660 7_3:+66580953 Msa1118040:three_prime_UTR
CACCCAATTAGAACAAAATA+AGG 0.345190 7_3:-66580320 None:intergenic
AAAATTTGATTATGCATTAG+AGG 0.346390 7_3:+66578842 Msa1118040:CDS
CCTGAGATTCATGCAGTTGC+AGG 0.346692 7_3:+66581135 Msa1118040:three_prime_UTR
CTCATCTACTTACGCACTTC+AGG 0.350347 7_3:+66580394 Msa1118040:three_prime_UTR
CTAGACATCCTCATGGGAAA+TGG 0.355262 7_3:+66579135 Msa1118040:CDS
AGATATGAATTTATGGTATC+AGG 0.357593 7_3:+66579950 Msa1118040:three_prime_UTR
GACCCAATTGATTCCTGGTC+TGG 0.365674 7_3:-66578636 None:intergenic
CTACGCTGCTGGTATTGAAA+TGG 0.366488 7_3:-66579680 None:intergenic
TTCTAACTTCATTGACTCCT+TGG 0.366501 7_3:-66579753 None:intergenic
TCCTGAACTTCGACAATCTC+GGG 0.370817 7_3:-66579710 None:intergenic
TGCAGTGTGTACCATTTATA+TGG 0.379213 7_3:-66581166 None:intergenic
TCTGCAACTGTTTCACCAAT+TGG 0.382568 7_3:-66580146 None:intergenic
GTGTTTCTCATTGCAGTGAT+TGG 0.383884 7_3:+66580771 Msa1118040:three_prime_UTR
TCAATACTTTGGTCTGCCTC+TGG 0.385140 7_3:-66579974 None:intergenic
TGCTAACATGAAGTTCTATC+AGG 0.386975 7_3:+66579046 Msa1118040:CDS
CCTGATCTAGATTCAGTAGA+AGG 0.389502 7_3:+66580491 Msa1118040:three_prime_UTR
GGGAGATATTGGGGCTCTAC+AGG 0.390148 7_3:+66579508 Msa1118040:CDS
CTCCCAGCTGGAACCAGCTT+GGG 0.390262 7_3:+66579926 Msa1118040:three_prime_UTR
TGGTGAAACAGTTGCAGAAA+TGG 0.392973 7_3:+66580151 Msa1118040:three_prime_UTR
CACATGCTAGGATTTCCAAC+TGG 0.395603 7_3:+66580712 Msa1118040:three_prime_UTR
CTTCATTATTGTCAATACTT+TGG 0.395680 7_3:-66579985 None:intergenic
CATGCGTTTGTATTCATTGA+AGG 0.398231 7_3:+66580846 Msa1118040:three_prime_UTR
CTTCTAGTTGATTCTCAGTA+CGG 0.400065 7_3:+66579335 Msa1118040:CDS
AGGGTTGAATACCATATAAA+TGG 0.403524 7_3:+66581155 Msa1118040:three_prime_UTR
TATAGAATCTGGAACAAACT+TGG 0.403612 7_3:+66579473 Msa1118040:CDS
CCTGCAACTGCATGAATCTC+AGG 0.405313 7_3:-66581135 None:intergenic
GACCAGGAATCAATTGGGTC+TGG 0.408789 7_3:+66578639 Msa1118040:CDS
TCCCCAGACCAGGAATCAAT+TGG 0.410170 7_3:+66578633 Msa1118040:CDS
GCTGAAAATGCTATCGCTAA+TGG 0.419287 7_3:+66579068 Msa1118040:CDS
AGAAGAATCGAGAGGCAGTT+AGG 0.419787 7_3:+66579629 Msa1118040:CDS
GGAAGGCTTGGAGGTCTTTG+TGG 0.422738 7_3:+66579089 Msa1118040:CDS
AACAGATCTGTTTCTATATG+TGG 0.425148 7_3:+66579893 Msa1118040:three_prime_UTR
ATACAAGAAGTAATCAAAAC+TGG 0.426658 7_3:+66579828 Msa1118040:CDS
ACCCAATTGATTCCTGGTCT+GGG 0.427381 7_3:-66578635 None:intergenic
TTATGCTATTCGAATGTTGT+TGG 0.428240 7_3:+66579259 Msa1118040:CDS
ATCATAATTGCCATTGGTGC+AGG 0.428659 7_3:+66580899 Msa1118040:three_prime_UTR
AACAGCTAGACCTCTGATAT+CGG 0.430946 7_3:-66579189 None:intergenic
AACAGAGTGCTTGGGCATTC+CGG 0.431857 7_3:-66579567 None:intergenic
TGAAGTTCAACCAACTCAAA+TGG 0.433013 7_3:-66578819 None:intergenic
TTCTAGTTGATTCTCAGTAC+GGG 0.438562 7_3:+66579336 Msa1118040:CDS
TAGAAGAAGGGTCTATGTTA+TGG 0.439703 7_3:+66579771 Msa1118040:CDS
CTTGGAGGTCTTTGTGGCAC+TGG 0.440275 7_3:+66579095 Msa1118040:CDS
TAAATCTTCAACAGAGTGCT+TGG 0.441724 7_3:-66579576 None:intergenic
CTAACACAGATCACGTTCTC+TGG 0.441774 7_3:-66580281 None:intergenic
TTCTTAGAAGCGTTAATTCA+AGG 0.443007 7_3:-66579166 None:intergenic
CTTCCCAAGCTGGTTCCAGC+TGG 0.444255 7_3:-66579929 None:intergenic
TGCTGGTATTAAGGGCTTGT+GGG 0.446395 7_3:+66578968 Msa1118040:CDS
CAGAGAACGTGATCTGTGTT+AGG 0.451934 7_3:+66580282 Msa1118040:three_prime_UTR
CTCAATTAATTGCCTTTGGA+AGG 0.452788 7_3:+66580036 Msa1118040:three_prime_UTR
GAGGATTCAGATGGGACAAA+AGG 0.453041 7_3:+66579797 Msa1118040:CDS
AATAGAGCTTCTCCTAGAAC+TGG 0.453416 7_3:-66579236 None:intergenic
TGTCATCTGGTGGTAGGTCT+CGG 0.453644 7_3:+66578679 Msa1118040:CDS
ACTCGTCAAGAACAATGAAA+TGG 0.455292 7_3:-66581045 None:intergenic
TACGCTGCTGGTATTGAAAT+GGG 0.457919 7_3:-66579679 None:intergenic
ATCCCATAAACTATGACATA+TGG 0.458143 7_3:+66580633 Msa1118040:three_prime_UTR
GTCACAATTTCCACCAGAGC+TGG 0.460018 7_3:-66580087 None:intergenic
CAATGAACACGATAAAATAA+GGG 0.465716 7_3:-66581216 None:intergenic
GGGCTCTCATCCCTCCCAGC+TGG 0.467042 7_3:+66579914 Msa1118040:three_prime_UTR
TAGACATCCTCATGGGAAAT+GGG 0.467130 7_3:+66579136 Msa1118040:CDS
ACAAATACTGTGCTAGGATC+CGG 0.468978 7_3:-66579311 None:intergenic
AACTGTTAAAACTCATGTCT+TGG 0.469481 7_3:-66581016 None:intergenic
GCTATCGCTAATGGAAGGCT+TGG 0.469516 7_3:+66579077 Msa1118040:CDS
ACCACCAGAGTGAATGGAAA+TGG 0.473208 7_3:+66579656 Msa1118040:CDS
CACTGTATTATGCAATATGC+CGG 0.475591 7_3:+66579548 Msa1118040:CDS
GTATTCATTGAAGGATTGGT+TGG 0.476169 7_3:+66580855 Msa1118040:three_prime_UTR
TATGGGAAGTGGGAACGAAC+TGG 0.476814 7_3:-66581274 None:intergenic
GGAGATACCACCAGAGTGAA+TGG 0.479369 7_3:+66579650 Msa1118040:CDS
CAAGCTGGTTCCAGCTGGGA+GGG 0.480689 7_3:-66579924 None:intergenic
ATTGGACTGATCACAAGAAC+AGG 0.480991 7_3:-66580128 None:intergenic
AAGAGGTCCAGTGTGTCATC+TGG 0.482225 7_3:+66578666 Msa1118040:CDS
CTCTCAACTGCTACATCGGC+TGG 0.483404 7_3:+66580236 Msa1118040:three_prime_UTR
GGATGCTAGGTGCAAACGCT+TGG 0.485316 7_3:-66574646 None:intergenic
CCTCCCAGCTGGAACCAGCT+TGG 0.487865 7_3:+66579925 Msa1118040:three_prime_UTR
ATCCTGAACTTCGACAATCT+CGG 0.488114 7_3:-66579711 None:intergenic
TATAGAAACAGATCTGTTCC+TGG 0.488142 7_3:-66579888 None:intergenic
AGCCATATGTCATAGTTTAT+GGG 0.488169 7_3:-66580635 None:intergenic
CCTTCTACTGAATCTAGATC+AGG 0.491986 7_3:-66580491 None:intergenic
AATATTCATGAAGATGATCA+TGG 0.492106 7_3:+66580674 Msa1118040:three_prime_UTR
TATAAATTTGTTGATAGTGA+CGG 0.493290 7_3:+66578720 Msa1118040:CDS
TTAATTTAAAGAGGGATGCT+AGG 0.494422 7_3:-66574659 None:intergenic
GTTCTTGTGATCAGTCCAAT+TGG 0.498107 7_3:+66580131 Msa1118040:three_prime_UTR
ATCGCTAATGGAAGGCTTGG+AGG 0.498607 7_3:+66579080 Msa1118040:CDS
GAGAAATGAAGATTCATAGC+AGG 0.501345 7_3:-66580374 None:intergenic
CAAACTTGGGAATGCAAACT+GGG 0.501616 7_3:+66579487 Msa1118040:CDS
TACAATGGAGAGAGACATCT+TGG 0.502840 7_3:+66580519 Msa1118040:three_prime_UTR
GAGTCAATGAAGTTAGAAGA+AGG 0.503840 7_3:+66579758 Msa1118040:CDS
CTGCAATGAGAAACACGTTA+AGG 0.507140 7_3:-66580764 None:intergenic
TGTCGAAGGCCCAGCTCTGG+TGG 0.510024 7_3:+66580077 Msa1118040:three_prime_UTR
CATTGTCGAAGGCCCAGCTC+TGG 0.510153 7_3:+66580074 Msa1118040:three_prime_UTR
GTCTTGGCTCCTCAAAATGA+AGG 0.510740 7_3:-66581000 None:intergenic
ACCAGGAATCAATTGGGTCT+GGG 0.511267 7_3:+66578640 Msa1118040:CDS
AGATTAATTCAGCAGAAGCT+TGG 0.511891 7_3:+66580548 Msa1118040:three_prime_UTR
ATAGAATCTGGAACAAACTT+GGG 0.512068 7_3:+66579474 Msa1118040:CDS
AAATTTGATTATGCATTAGA+GGG 0.512978 7_3:+66578843 Msa1118040:CDS
CTTCCAAAGGCAATTAATTG+AGG 0.514234 7_3:-66580035 None:intergenic
CTGGGCCTTCGACAATGACC+AGG 0.517442 7_3:-66580068 None:intergenic
ATGCTGGTATTAAGGGCTTG+TGG 0.519513 7_3:+66578967 Msa1118040:CDS
TAGCGTCATCTGAACCAAAT+CGG 0.519610 7_3:-66580184 None:intergenic
AGAAGGGTCTATGTTATGGC+TGG 0.520096 7_3:+66579775 Msa1118040:CDS
AAATCTTCAACAGAGTGCTT+GGG 0.521067 7_3:-66579575 None:intergenic
TTCCCAAGCTGGTTCCAGCT+GGG 0.522150 7_3:-66579928 None:intergenic
TGCAAACTGGGGAGATATTG+GGG 0.525094 7_3:+66579499 Msa1118040:CDS
GTTTGTATTCATTGAAGGAT+TGG 0.525738 7_3:+66580851 Msa1118040:three_prime_UTR
GCCATTTCCATTCACTCTGG+TGG 0.525891 7_3:-66579657 None:intergenic
GTAGAAGCATGAACAGCATT+AGG 0.525938 7_3:-66578894 None:intergenic
AGAAGAACAAATACTGTGCT+AGG 0.527370 7_3:-66579317 None:intergenic
TTTCAGGAATTGGACCCAGT+TGG 0.530146 7_3:-66580727 None:intergenic
AGCACTCTCAACTGCTACAT+CGG 0.531267 7_3:+66580232 Msa1118040:three_prime_UTR
AAATTCATATCTTCCCAAGC+TGG 0.531371 7_3:-66579939 None:intergenic
GTGGAAATTGTGACCACCCT+TGG 0.533087 7_3:+66580096 Msa1118040:three_prime_UTR
CTAGAACTGGTAAAGAAGGC+TGG 0.534693 7_3:-66579223 None:intergenic
TCTCCTAGAACTGGTAAAGA+AGG 0.536896 7_3:-66579227 None:intergenic
TGGTTGGTGTATTTCATCAA+AGG 0.537499 7_3:+66580871 Msa1118040:three_prime_UTR
AACGTGATCTGTGTTAGGTC+TGG 0.538417 7_3:+66580287 Msa1118040:three_prime_UTR
CCCCAGACCAGGAATCAATT+GGG 0.540792 7_3:+66578634 Msa1118040:CDS
GGAAATTGACAGCACATGCT+AGG 0.541219 7_3:+66580700 Msa1118040:three_prime_UTR
CCAGTGTGTCATCTGGTGGT+AGG 0.544409 7_3:+66578673 Msa1118040:CDS
CTGAGATTCATGCAGTTGCA+GGG 0.545808 7_3:+66581136 Msa1118040:three_prime_UTR
AGCAGTCCAACCTGCACCAA+TGG 0.546777 7_3:-66580909 None:intergenic
CCAAGCTGGTTCCAGCTGGG+AGG 0.553218 7_3:-66579925 None:intergenic
TTGACGTGGCTTAACAATAC+AGG 0.554050 7_3:+66574602 None:intergenic
AGTGGGAACGAACTGGAGAC+AGG 0.557059 7_3:-66581267 None:intergenic
GTTGCAGAAATGGTAGAGGC+AGG 0.557961 7_3:+66580161 Msa1118040:three_prime_UTR
AGTCAATGAAGTTAGAAGAA+GGG 0.558174 7_3:+66579759 Msa1118040:CDS
GACTACGGCATGGAGACATC+AGG 0.558917 7_3:+66580258 Msa1118040:three_prime_UTR
GAGCATATCATAATTGCCAT+TGG 0.559030 7_3:+66580893 Msa1118040:three_prime_UTR
CAATACAACTTACTTTGACA+AGG 0.559105 7_3:-66581069 None:intergenic
ACTATGACATATGGCTGAGA+AGG 0.559490 7_3:+66580642 Msa1118040:three_prime_UTR
ATTTGATGTGCCATTTGAGT+TGG 0.560840 7_3:+66578809 Msa1118040:CDS
CTGCTACATCGGCTGGACTA+CGG 0.560902 7_3:+66580243 Msa1118040:three_prime_UTR
TAATTGCCATTGGTGCAGGT+TGG 0.561254 7_3:+66580903 Msa1118040:three_prime_UTR
ATGCTTTATTATTCATGCGG+TGG 0.561436 7_3:+66580461 Msa1118040:three_prime_UTR
TTGAAGACGTGAACTATGAT+CGG 0.562266 7_3:-66579603 None:intergenic
AGGATTCAGATGGGACAAAA+GGG 0.564614 7_3:+66579798 Msa1118040:CDS
AGAGTGCTGATAAGCAATCA+TGG 0.566608 7_3:-66580217 None:intergenic
TCAAGAACAATGAAATGGAA+AGG 0.571054 7_3:-66581040 None:intergenic
ACAGATCTGTTTCTATATGT+GGG 0.571974 7_3:+66579894 Msa1118040:three_prime_UTR
CTGGTGGTAGGTCTCGGAAT+CGG 0.574466 7_3:+66578685 Msa1118040:CDS
CAGTAGAAGGAGCGCTACAA+TGG 0.582919 7_3:+66580504 Msa1118040:three_prime_UTR
TTGACAATAATGAAGCAGAA+AGG 0.586050 7_3:+66579993 Msa1118040:three_prime_UTR
TATATGCTTTATTATTCATG+CGG 0.586795 7_3:+66580458 Msa1118040:three_prime_UTR
AACAGTTGCAGAAATGGTAG+AGG 0.587170 7_3:+66580157 Msa1118040:three_prime_UTR
CTATTCGAATGTTGTTGGCA+AGG 0.588289 7_3:+66579264 Msa1118040:CDS
TTATGAATGTGCTGCTGAGT+GGG 0.588709 7_3:+66579415 Msa1118040:CDS
TCACAATTTCCACCAGAGCT+GGG 0.590244 7_3:-66580086 None:intergenic
TGGGCCATTTCCATTCACTC+TGG 0.590821 7_3:-66579660 None:intergenic
ATATTGCATAATACAGTGAA+AGG 0.591146 7_3:-66579543 None:intergenic
GGAGAGAGACATCTTGGTCA+AGG 0.592311 7_3:+66580525 Msa1118040:three_prime_UTR
ACATGCTAGGATTTCCAACT+GGG 0.592467 7_3:+66580713 Msa1118040:three_prime_UTR
AATAATTCTAGACATCCTCA+TGG 0.597418 7_3:+66579128 Msa1118040:CDS
TTATGTCAAGGTCGATTCCA+AGG 0.598570 7_3:+66579736 Msa1118040:CDS
ACATATGGCTGAGAAGGTTG+AGG 0.598573 7_3:+66580648 Msa1118040:three_prime_UTR
GATATCAGAGGTCTAGCTGT+TGG 0.599351 7_3:+66579191 Msa1118040:CDS
AATTGTGACCACCCTTGGTG+TGG 0.602605 7_3:+66580101 Msa1118040:three_prime_UTR
ATAAATGGTACACACTGCAC+AGG 0.602620 7_3:+66581170 Msa1118040:three_prime_UTR
ATAGAAACAGATCTGTTCCT+GGG 0.603573 7_3:-66579887 None:intergenic
TGTAGGTAGATCCCCAGACC+AGG 0.603796 7_3:+66578623 Msa1118040:intron
TACACCCTGGTCATTGTCGA+AGG 0.604163 7_3:+66580063 Msa1118040:three_prime_UTR
GATTATGTCGACAGTCTATG+TGG 0.604719 7_3:+66580602 Msa1118040:three_prime_UTR
CCTGAACTTCGACAATCTCG+GGG 0.605553 7_3:-66579709 None:intergenic
TCATGAAGATGATCATGGAA+AGG 0.606776 7_3:+66580679 Msa1118040:three_prime_UTR
GCATCTTATGTTGAAGACCC+AGG 0.608281 7_3:+66579870 Msa1118040:three_prime_UTR
AATAATAAAGCATATAGACT+AGG 0.609211 7_3:-66580451 None:intergenic
TCTAGTTGATTCTCAGTACG+GGG 0.609471 7_3:+66579337 Msa1118040:CDS
AGAAATGAAGATTCATAGCA+GGG 0.610581 7_3:-66580373 None:intergenic
CCCAATTGATTCCTGGTCTG+GGG 0.612377 7_3:-66578634 None:intergenic
TTATGGCTGGAGGATTCAGA+TGG 0.613979 7_3:+66579788 Msa1118040:CDS
TGGTAGGTCTCGGAATCGGA+AGG 0.614968 7_3:+66578689 Msa1118040:CDS
CTCTATCTTCAAGAATAGCA+TGG 0.617992 7_3:-66580346 None:intergenic
ATAATTCTAGACATCCTCAT+GGG 0.619776 7_3:+66579129 Msa1118040:CDS
AGGGTCTATGTTATGGCTGG+AGG 0.620896 7_3:+66579778 Msa1118040:CDS
ACATCGGCTGGACTACGGCA+TGG 0.621645 7_3:+66580248 Msa1118040:three_prime_UTR
CAATTGGGTCTGGGACAAAG+AGG 0.627588 7_3:+66578649 Msa1118040:CDS
ATTGTGACCACCCTTGGTGT+GGG 0.628764 7_3:+66580102 Msa1118040:three_prime_UTR
TTAACAATACAGGCGTGTGT+TGG 0.629234 7_3:+66574612 Msa1118040:five_prime_UTR
ATGTCACCAATAGAGTCTCA+AGG 0.631365 7_3:-66580946 None:intergenic
AAAATGCTATCGCTAATGGA+AGG 0.633589 7_3:+66579072 Msa1118040:CDS
CTGCAACTGCATGAATCTCA+GGG 0.636483 7_3:-66581134 None:intergenic
TGGTATTAAGGGCTTGTGGG+AGG 0.641546 7_3:+66578971 Msa1118040:CDS
AGGGTGTATGAGCCTTCCAA+AGG 0.645844 7_3:-66580048 None:intergenic
GAACAGGAGTCCCACACCAA+GGG 0.647420 7_3:-66580112 None:intergenic
TCTACTTACGCACTTCAGGA+AGG 0.648241 7_3:+66580398 Msa1118040:three_prime_UTR
AGGTCCAGTGTGTCATCTGG+TGG 0.648424 7_3:+66578669 Msa1118040:CDS
TAGGCTTTCTGCATCAGATG+CGG 0.649383 7_3:-66580432 None:intergenic
AATTTGATTATGCATTAGAG+GGG 0.649477 7_3:+66578844 Msa1118040:CDS
TGCAAACGCTTGGACAGACG+CGG 0.653919 7_3:-66574636 None:intergenic
CAGGAGTCCCACACCAAGGG+TGG 0.654864 7_3:-66580109 None:intergenic
AGCAAAAGCTTTCAGCACAG+TGG 0.657474 7_3:-66580579 None:intergenic
AGTTCAGGATGATTATGTCA+AGG 0.662091 7_3:+66579724 Msa1118040:CDS
CTAGTTGATTCTCAGTACGG+GGG 0.666070 7_3:+66579338 Msa1118040:CDS
ATTTATGGTATCAGGTCCAG+AGG 0.666301 7_3:+66579958 Msa1118040:three_prime_UTR
TTTATGAATGTGCTGCTGAG+TGG 0.667528 7_3:+66579414 Msa1118040:CDS
TTTGGAAGGCTCATACACCC+TGG 0.667640 7_3:+66580050 Msa1118040:three_prime_UTR
TATGGCTGGAGGATTCAGAT+GGG 0.675476 7_3:+66579789 Msa1118040:CDS
AGAACAGGAGTCCCACACCA+AGG 0.677710 7_3:-66580113 None:intergenic
ATTATGTCGACAGTCTATGT+GGG 0.678690 7_3:+66580603 Msa1118040:three_prime_UTR
AGATGATCCCATTTCCCATG+AGG 0.683325 7_3:-66579143 None:intergenic
CTTCTAAGAACCGATATCAG+AGG 0.684653 7_3:+66579179 Msa1118040:CDS
CCTACCACCAGATGACACAC+TGG 0.697213 7_3:-66578673 None:intergenic
TTCAAACAAGAAGAATCGAG+AGG 0.700685 7_3:+66579621 Msa1118040:CDS
TCTGTGTTAGGTCTGGTGTG+AGG 0.703035 7_3:+66580294 Msa1118040:three_prime_UTR
TGGGCCTTCGACAATGACCA+GGG 0.704817 7_3:-66580067 None:intergenic
GAACTGGTAAAGAAGGCTGG+CGG 0.719336 7_3:-66579220 None:intergenic
CTGAACTTCGACAATCTCGG+GGG 0.725557 7_3:-66579708 None:intergenic
AAACTTGGGAATGCAAACTG+GGG 0.727261 7_3:+66579488 Msa1118040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTATTATTTCTCAATT+TGG + chr7_3:66574887-66574906 Msa1118040:intron 10.0%
!!! TTTTTTTTTTTTTTTTTGGA+GGG + chr7_3:66575218-66575237 Msa1118040:intron 10.0%
!!! TTTTTTTTTAAGACTATAAT+AGG + chr7_3:66575373-66575392 Msa1118040:intron 10.0%
!!! ATAAATTTTAAACAATAATC+GGG + chr7_3:66576848-66576867 Msa1118040:intron 10.0%
!!! GTTTTTTTTTTTTTTTTTGG+AGG + chr7_3:66575217-66575236 Msa1118040:intron 15.0%
!!! TTTTTTTTTTTTTTTTGGAG+GGG + chr7_3:66575219-66575238 Msa1118040:intron 15.0%
!!! CTAATTATTTGATTTTTTTC+TGG - chr7_3:66575528-66575547 None:intergenic 15.0%
!! AGTTATTTAATGAGAATATA+AGG - chr7_3:66575760-66575779 None:intergenic 15.0%
!! AATATCTATTTAGTTAAAAG+CGG - chr7_3:66576184-66576203 None:intergenic 15.0%
!!! AAAAGTATTGTAGTTATTTT+AGG + chr7_3:66576590-66576609 Msa1118040:intron 15.0%
!! TATAAATTTATAATTGGTAC+TGG + chr7_3:66577495-66577514 Msa1118040:intron 15.0%
!! ATAAATTTATAATTGGTACT+GGG + chr7_3:66577496-66577515 Msa1118040:intron 15.0%
!! ATATACTGATATATTAAATC+TGG + chr7_3:66578212-66578231 Msa1118040:intron 15.0%
!! TATACTGATATATTAAATCT+GGG + chr7_3:66578213-66578232 Msa1118040:intron 15.0%
!!! TATAATGATTATTCCTTTTT+AGG - chr7_3:66578575-66578594 None:intergenic 15.0%
!!! TGACAAAATTTTAGGAATTT+AGG + chr7_3:66575015-66575034 Msa1118040:intron 20.0%
!!! GACAAAATTTTAGGAATTTA+GGG + chr7_3:66575016-66575035 Msa1118040:intron 20.0%
!!! AAATCAAATGAACGTTTTTA+GGG - chr7_3:66576056-66576075 None:intergenic 20.0%
!!! AAAATCAAATGAACGTTTTT+AGG - chr7_3:66576057-66576076 None:intergenic 20.0%
!!! TACAAGATAACTTTTTGAAA+AGG - chr7_3:66576669-66576688 None:intergenic 20.0%
!! TCAAAAACAAAAAAACATAG+AGG + chr7_3:66576736-66576755 Msa1118040:intron 20.0%
!!! ATTGAATTATTGCTTTTAGT+TGG + chr7_3:66576799-66576818 Msa1118040:intron 20.0%
!!! TTTTACAAAAGACTCAATTT+AGG + chr7_3:66577262-66577281 Msa1118040:intron 20.0%
!! TTTACAAAAGACTCAATTTA+GGG + chr7_3:66577263-66577282 Msa1118040:intron 20.0%
!! TTTACAGTAAAAATAAGTCA+GGG - chr7_3:66577391-66577410 None:intergenic 20.0%
!! ATTTACAGTAAAAATAAGTC+AGG - chr7_3:66577392-66577411 None:intergenic 20.0%
!!! ATTTTTACTGTAAATTGTAC+TGG + chr7_3:66577397-66577416 Msa1118040:intron 20.0%
!! TAAATTTATAATTGGTACTG+GGG + chr7_3:66577497-66577516 Msa1118040:intron 20.0%
!! AAACAAAACACATGTATATT+AGG + chr7_3:66577827-66577846 Msa1118040:intron 20.0%
!!! AGTATATTCTCATTATTTCT+CGG - chr7_3:66578163-66578182 None:intergenic 20.0%
!! ATATACTGCTATATATTGAT+AGG + chr7_3:66578176-66578195 Msa1118040:intron 20.0%
!! CACTTCAATATAATATATAG+TGG + chr7_3:66578388-66578407 Msa1118040:intron 20.0%
!! AATATAATATATAGTGGTTG+CGG + chr7_3:66578394-66578413 Msa1118040:intron 20.0%
!!! TATAAATTTGTTGATAGTGA+CGG + chr7_3:66578720-66578739 Msa1118040:CDS 20.0%
!! AAAATTTGATTATGCATTAG+AGG + chr7_3:66578842-66578861 Msa1118040:CDS 20.0%
!! AAATTTGATTATGCATTAGA+GGG + chr7_3:66578843-66578862 Msa1118040:CDS 20.0%
!!! AACCTTATTTTGTTCTAATT+GGG + chr7_3:66580318-66580337 Msa1118040:three_prime_UTR 20.0%
!! AATAATAAAGCATATAGACT+AGG - chr7_3:66580454-66580473 None:intergenic 20.0%
!!! TATATGCTTTATTATTCATG+CGG + chr7_3:66580458-66580477 Msa1118040:three_prime_UTR 20.0%
!! TGCATTTTTAATAAGCTATC+TGG - chr7_3:66574747-66574766 None:intergenic 25.0%
! GATAGCTTATTAAAAATGCA+AGG + chr7_3:66574747-66574766 Msa1118040:exon 25.0%
! GTGAAAGAAGATAGAATTTA+GGG - chr7_3:66574812-66574831 None:intergenic 25.0%
! AGTGAAAGAAGATAGAATTT+AGG - chr7_3:66574813-66574832 None:intergenic 25.0%
!! CGAATGTTTGACAAAATTTT+AGG + chr7_3:66575007-66575026 Msa1118040:intron 25.0%
!!! AAGTTTTGACTCTAAAATGT+AGG + chr7_3:66575269-66575288 Msa1118040:intron 25.0%
! AGATATATATTAAGGGATCA+CGG - chr7_3:66575591-66575610 None:intergenic 25.0%
! GGATATAACAATTGTTCTTA+AGG + chr7_3:66575680-66575699 Msa1118040:intron 25.0%
!!! TGCTTTTGTTTAACAATATG+CGG + chr7_3:66576260-66576279 Msa1118040:intron 25.0%
! ACAAAAATATCGATGAAGTT+TGG - chr7_3:66576323-66576342 None:intergenic 25.0%
! AAAAAGTTCAATATTTCTCC+AGG + chr7_3:66576423-66576442 Msa1118040:intron 25.0%
! AAAAGTTCAATATTTCTCCA+GGG + chr7_3:66576424-66576443 Msa1118040:intron 25.0%
! CTTCTGAATGAATCAAAAAT+AGG - chr7_3:66576518-66576537 None:intergenic 25.0%
!! AAATCCATTTGACTCTAAAA+AGG + chr7_3:66576632-66576651 Msa1118040:intron 25.0%
! TTTAAACAATAATCGGGTTA+AGG + chr7_3:66576854-66576873 Msa1118040:intron 25.0%
!!! TGATTTGTTTTGAGATATAC+TGG + chr7_3:66577178-66577197 Msa1118040:intron 25.0%
! CATAAAAACATAGAAGTTAC+TGG - chr7_3:66577238-66577257 None:intergenic 25.0%
! AAAACAAAAATGAGTTGTGT+TGG + chr7_3:66577353-66577372 Msa1118040:intron 25.0%
! AAACAAAAATGAGTTGTGTT+GGG + chr7_3:66577354-66577373 Msa1118040:intron 25.0%
!!! GATGTAATGACGTTTTTTTT+AGG + chr7_3:66577600-66577619 Msa1118040:intron 25.0%
!!! ACTTATGTCTATTTTTGTAG+AGG - chr7_3:66577689-66577708 None:intergenic 25.0%
!! ATATCATGTTTGTGATTTTC+TGG + chr7_3:66577742-66577761 Msa1118040:intron 25.0%
!! ACTTTAAGAAAGCAATTTGT+GGG - chr7_3:66577854-66577873 None:intergenic 25.0%
!! TACTTTAAGAAAGCAATTTG+TGG - chr7_3:66577855-66577874 None:intergenic 25.0%
! ACAAATTGCTTTCTTAAAGT+AGG + chr7_3:66577854-66577873 Msa1118040:intron 25.0%
!!! ATTGTTTTTGCACATATGTT+AGG + chr7_3:66578003-66578022 Msa1118040:intron 25.0%
! GATTTCTTTAAGTAGACATA+TGG + chr7_3:66578069-66578088 Msa1118040:intron 25.0%
! TTAAATTTACCAGCAAAGAA+GGG + chr7_3:66578257-66578276 Msa1118040:intron 25.0%
! ATATAATATATAGTGGTTGC+GGG + chr7_3:66578395-66578414 Msa1118040:intron 25.0%
! CATCTAACTATAAGTGATTA+AGG + chr7_3:66578424-66578443 Msa1118040:intron 25.0%
! TGACAATAGAAATTCAACAA+AGG - chr7_3:66578458-66578477 None:intergenic 25.0%
! TGAAAATTCAGAGATAAGAA+AGG - chr7_3:66578493-66578512 None:intergenic 25.0%
!!! AATGATTATTCCTTTTTAGG+AGG - chr7_3:66578572-66578591 None:intergenic 25.0%
! TGAATGAAAAACTTGTAGAT+TGG + chr7_3:66578745-66578764 Msa1118040:CDS 25.0%
! AATTTGATTATGCATTAGAG+GGG + chr7_3:66578844-66578863 Msa1118040:CDS 25.0%
! TTTCTCCAATTTATAGAATC+TGG + chr7_3:66579462-66579481 Msa1118040:CDS 25.0%
! TTGTTCCAGATTCTATAAAT+TGG - chr7_3:66579470-66579489 None:intergenic 25.0%
! ATATTGCATAATACAGTGAA+AGG - chr7_3:66579546-66579565 None:intergenic 25.0%
! ATACAAGAAGTAATCAAAAC+TGG + chr7_3:66579828-66579847 Msa1118040:CDS 25.0%
! AGATATGAATTTATGGTATC+AGG + chr7_3:66579950-66579969 Msa1118040:three_prime_UTR 25.0%
! CTTCATTATTGTCAATACTT+TGG - chr7_3:66579988-66580007 None:intergenic 25.0%
!!! CAACCTTATTTTGTTCTAAT+TGG + chr7_3:66580317-66580336 Msa1118040:three_prime_UTR 25.0%
!!! TTATTTTGTTCTAATTGGGT+GGG + chr7_3:66580322-66580341 Msa1118040:three_prime_UTR 25.0%
! AATATTCATGAAGATGATCA+TGG + chr7_3:66580674-66580693 Msa1118040:three_prime_UTR 25.0%
! CATTCGTTTGTAAAGATAAT+AGG + chr7_3:66581099-66581118 Msa1118040:three_prime_UTR 25.0%
! CAATGAACACGATAAAATAA+GGG - chr7_3:66581219-66581238 None:intergenic 25.0%
! ACAATGAACACGATAAAATA+AGG - chr7_3:66581220-66581239 None:intergenic 25.0%
TTAATTTAAAGAGGGATGCT+AGG - chr7_3:66574662-66574681 None:intergenic 30.0%
AAAACACAGCTTAGAATAGA+CGG - chr7_3:66574850-66574869 None:intergenic 30.0%
!!! TAGTGTTTTCGTTTGTTGTT+TGG + chr7_3:66574961-66574980 Msa1118040:intron 30.0%
!! GTTTCATTTTGCGTTGTTTT+TGG + chr7_3:66575128-66575147 Msa1118040:intron 30.0%
!!! TTTTGCGTTGTTTTTGGATT+AGG + chr7_3:66575134-66575153 Msa1118040:intron 30.0%
!!! TTTGCGTTGTTTTTGGATTA+GGG + chr7_3:66575135-66575154 Msa1118040:intron 30.0%
AGAGTCAAAACTTAGTCAAA+GGG - chr7_3:66575262-66575281 None:intergenic 30.0%
TAGAGTCAAAACTTAGTCAA+AGG - chr7_3:66575263-66575282 None:intergenic 30.0%
!! ACTCTAAAATGTAGGTGATT+TGG + chr7_3:66575277-66575296 Msa1118040:intron 30.0%
! TAAAATGTAGGTGATTTGGA+GGG + chr7_3:66575281-66575300 Msa1118040:intron 30.0%
CGCAAGTTAAATTGTATGAT+CGG - chr7_3:66575832-66575851 None:intergenic 30.0%
CTATACTACAGATCTATTAG+TGG + chr7_3:66576142-66576161 Msa1118040:intron 30.0%
TATTTAGTTAAAAGCGGCTA+TGG - chr7_3:66576178-66576197 None:intergenic 30.0%
TGATTACAATGTGAAAGTGA+TGG + chr7_3:66576236-66576255 Msa1118040:intron 30.0%
AAAGTTCAATATTTCTCCAG+GGG + chr7_3:66576425-66576444 Msa1118040:intron 30.0%
!!! AGTACCTTTTTAGAGTCAAA+TGG - chr7_3:66576639-66576658 None:intergenic 30.0%
! TTTTGAGCAAACAATCTCTA+TGG - chr7_3:66576722-66576741 None:intergenic 30.0%
TGTCTTAACAGTGATAAACA+GGG - chr7_3:66576991-66577010 None:intergenic 30.0%
AAGCATCTGAAAATAACAGA+TGG + chr7_3:66577062-66577081 Msa1118040:intron 30.0%
GTTGCATCGAATTTAATGAT+TGG + chr7_3:66577200-66577219 Msa1118040:intron 30.0%
TTTACTGTAAATTGTACTGG+AGG + chr7_3:66577400-66577419 Msa1118040:intron 30.0%
TTTATAATAAAGGACAAGCC+AGG - chr7_3:66577481-66577500 None:intergenic 30.0%
TTTCATAGAAAACGAAATCC+AGG + chr7_3:66577630-66577649 Msa1118040:intron 30.0%
!!! CTGAAGAAATTGTTTTTTCC+TGG - chr7_3:66577651-66577670 None:intergenic 30.0%
AACATGATATGCAGACATTT+GGG - chr7_3:66577732-66577751 None:intergenic 30.0%
AAACATGATATGCAGACATT+TGG - chr7_3:66577733-66577752 None:intergenic 30.0%
!!! TTGTGATTTTCTGGAACTTT+TGG + chr7_3:66577751-66577770 Msa1118040:intron 30.0%
! TTGGACTGTGTTAATTTTGA+AGG + chr7_3:66577770-66577789 Msa1118040:intron 30.0%
!!! TTTTTTCAGTACCAGAGAAA+GGG - chr7_3:66577810-66577829 None:intergenic 30.0%
! TAACTTTTATGCACCCTATA+AGG + chr7_3:66577947-66577966 Msa1118040:intron 30.0%
ATCAAAGTTGTGTCCTTATA+GGG - chr7_3:66577963-66577982 None:intergenic 30.0%
!!! GTCTTGGCTTTTTTTTTTTC+TGG + chr7_3:66578109-66578128 Msa1118040:intron 30.0%
GTGTTTATACTTATAGTCGA+CGG + chr7_3:66578131-66578150 Msa1118040:intron 30.0%
GTTAAATTTACCAGCAAAGA+AGG + chr7_3:66578256-66578275 Msa1118040:intron 30.0%
GAGATCAAAATGATCAAACA+TGG - chr7_3:66578369-66578388 None:intergenic 30.0%
! TATCTCTGAATTTTCAGTTC+AGG + chr7_3:66578497-66578516 Msa1118040:intron 30.0%
TTTCTACTATCCTCCTAAAA+AGG + chr7_3:66578559-66578578 Msa1118040:intron 30.0%
! ATTGAAGATTTTCTACATGC+TGG + chr7_3:66578951-66578970 Msa1118040:CDS 30.0%
! TTTTCTACATGCTGGTATTA+AGG + chr7_3:66578959-66578978 Msa1118040:CDS 30.0%
TTTCTACATGCTGGTATTAA+GGG + chr7_3:66578960-66578979 Msa1118040:CDS 30.0%
AATAATTCTAGACATCCTCA+TGG + chr7_3:66579128-66579147 Msa1118040:CDS 30.0%
ATAATTCTAGACATCCTCAT+GGG + chr7_3:66579129-66579148 Msa1118040:CDS 30.0%
!! TTCTTAGAAGCGTTAATTCA+AGG - chr7_3:66579169-66579188 None:intergenic 30.0%
TTATGCTATTCGAATGTTGT+TGG + chr7_3:66579259-66579278 Msa1118040:CDS 30.0%
! TATAGAATCTGGAACAAACT+TGG + chr7_3:66579473-66579492 Msa1118040:CDS 30.0%
! ATAGAATCTGGAACAAACTT+GGG + chr7_3:66579474-66579493 Msa1118040:CDS 30.0%
AGTCAATGAAGTTAGAAGAA+GGG + chr7_3:66579759-66579778 Msa1118040:CDS 30.0%
!! AACAGATCTGTTTCTATATG+TGG + chr7_3:66579893-66579912 Msa1118040:three_prime_UTR 30.0%
!! ACAGATCTGTTTCTATATGT+GGG + chr7_3:66579894-66579913 Msa1118040:three_prime_UTR 30.0%
CTTGGGAAGATATGAATTTA+TGG + chr7_3:66579943-66579962 Msa1118040:three_prime_UTR 30.0%
TTGACAATAATGAAGCAGAA+AGG + chr7_3:66579993-66580012 Msa1118040:three_prime_UTR 30.0%
CACCCAATTAGAACAAAATA+AGG - chr7_3:66580323-66580342 None:intergenic 30.0%
!!! CTTATTTTGTTCTAATTGGG+TGG + chr7_3:66580321-66580340 Msa1118040:three_prime_UTR 30.0%
! TATTTTGTTCTAATTGGGTG+GGG + chr7_3:66580323-66580342 Msa1118040:three_prime_UTR 30.0%
AGAAATGAAGATTCATAGCA+GGG - chr7_3:66580376-66580395 None:intergenic 30.0%
ATGTCATAGTTTATGGGATA+TGG - chr7_3:66580632-66580651 None:intergenic 30.0%
ATCCCATAAACTATGACATA+TGG + chr7_3:66580633-66580652 Msa1118040:three_prime_UTR 30.0%
AGCCATATGTCATAGTTTAT+GGG - chr7_3:66580638-66580657 None:intergenic 30.0%
! AGAGTTTTCATTTCAGGAAT+TGG - chr7_3:66580740-66580759 None:intergenic 30.0%
! GGTTATAGAGTTTTCATTTC+AGG - chr7_3:66580746-66580765 None:intergenic 30.0%
! ATTGCAGTGATTGGATTTTT+GGG + chr7_3:66580780-66580799 Msa1118040:three_prime_UTR 30.0%
GTTTGTATTCATTGAAGGAT+TGG + chr7_3:66580851-66580870 Msa1118040:three_prime_UTR 30.0%
TTTAAACCTTGAGACTCTAT+TGG + chr7_3:66580940-66580959 Msa1118040:three_prime_UTR 30.0%
AACTGTTAAAACTCATGTCT+TGG - chr7_3:66581019-66581038 None:intergenic 30.0%
TCAAGAACAATGAAATGGAA+AGG - chr7_3:66581043-66581062 None:intergenic 30.0%
CAATACAACTTACTTTGACA+AGG - chr7_3:66581072-66581091 None:intergenic 30.0%
AGGGTTGAATACCATATAAA+TGG + chr7_3:66581155-66581174 Msa1118040:three_prime_UTR 30.0%
ATCAAACAGATTCAGCATCA+AGG - chr7_3:66574941-66574960 None:intergenic 35.0%
AATGAAACATCAAGCTTCGT+CGG - chr7_3:66575116-66575135 None:intergenic 35.0%
!!! TTGCGTTGTTTTTGGATTAG+GGG + chr7_3:66575136-66575155 Msa1118040:intron 35.0%
!!! TTTTTTTGGAGGGGATAGAT+AGG + chr7_3:66575228-66575247 Msa1118040:intron 35.0%
! CTAAAATGTAGGTGATTTGG+AGG + chr7_3:66575280-66575299 Msa1118040:intron 35.0%
!! TGCATTTGAGTTGTACTTAC+CGG - chr7_3:66575419-66575438 None:intergenic 35.0%
TGCCAGGATATTTGATATAC+TGG + chr7_3:66575441-66575460 Msa1118040:intron 35.0%
GCCAGGATATTTGATATACT+GGG + chr7_3:66575442-66575461 Msa1118040:intron 35.0%
CCAGGATATTTGATATACTG+GGG + chr7_3:66575443-66575462 Msa1118040:intron 35.0%
TGATAACATAGGGTTCAAGA+GGG - chr7_3:66575562-66575581 None:intergenic 35.0%
ACGAATTGCAGAGGAATTAA+GGG - chr7_3:66575652-66575671 None:intergenic 35.0%
CTTGCGATCTTAACAACATT+AGG + chr7_3:66575846-66575865 Msa1118040:intron 35.0%
ATGAGTATCACCAGAAACTT+CGG - chr7_3:66575983-66576002 None:intergenic 35.0%
TGGTGATACTCATAGTTATG+TGG + chr7_3:66575990-66576009 Msa1118040:intron 35.0%
TGCAATGTTATCCATTCACT+TGG - chr7_3:66576025-66576044 None:intergenic 35.0%
CAGATCTATTAGTGGTATTG+AGG + chr7_3:66576150-66576169 Msa1118040:intron 35.0%
TTTAACAATATGCGGTGACA+AGG + chr7_3:66576268-66576287 Msa1118040:intron 35.0%
TGTTGCATTTGCACAATGAT+AGG + chr7_3:66576359-66576378 Msa1118040:intron 35.0%
TGCACAATGATAGGTAGAAA+TGG + chr7_3:66576368-66576387 Msa1118040:intron 35.0%
CAATGATAGGTAGAAATGGA+AGG + chr7_3:66576372-66576391 Msa1118040:intron 35.0%
!!! ATAGGCTTTTAAGACATGAC+AGG - chr7_3:66576500-66576519 None:intergenic 35.0%
AAAAAAACATAGAGGCTGAG+TGG + chr7_3:66576744-66576763 Msa1118040:intron 35.0%
!! TTGCTTTTAGTTGGCATAGA+TGG + chr7_3:66576808-66576827 Msa1118040:intron 35.0%
GTTTACCATAGGTTGTATGA+CGG + chr7_3:66576885-66576904 Msa1118040:intron 35.0%
AAATACTGTCTGCTCTGTTA+GGG + chr7_3:66576926-66576945 Msa1118040:intron 35.0%
TCTTAACAGTGATAAACAGG+GGG - chr7_3:66576989-66577008 None:intergenic 35.0%
GTCTTAACAGTGATAAACAG+GGG - chr7_3:66576990-66577009 None:intergenic 35.0%
GTGTCTTAACAGTGATAAAC+AGG - chr7_3:66576992-66577011 None:intergenic 35.0%
TTTATCACTGTTAAGACACC+TGG + chr7_3:66576993-66577012 Msa1118040:intron 35.0%
CTTGAGAGAGAAAAGGATTA+GGG - chr7_3:66577109-66577128 None:intergenic 35.0%
ACTTGAGAGAGAAAAGGATT+AGG - chr7_3:66577110-66577129 None:intergenic 35.0%
ATCAAGACTTGAGAGAGAAA+AGG - chr7_3:66577116-66577135 None:intergenic 35.0%
! TAGCTTTTAGTGGTGAAAAC+AGG + chr7_3:66577426-66577445 Msa1118040:intron 35.0%
! AGCTTTTAGTGGTGAAAACA+GGG + chr7_3:66577427-66577446 Msa1118040:intron 35.0%
TGGTGAAAACAGGGATAATT+TGG + chr7_3:66577436-66577455 Msa1118040:intron 35.0%
GGTGAAAACAGGGATAATTT+GGG + chr7_3:66577437-66577456 Msa1118040:intron 35.0%
GTGAAAACAGGGATAATTTG+GGG + chr7_3:66577438-66577457 Msa1118040:intron 35.0%
TGAAAACAGGGATAATTTGG+GGG + chr7_3:66577439-66577458 Msa1118040:intron 35.0%
! GTTTTCACTTCTACCAAACA+TGG - chr7_3:66577545-66577564 None:intergenic 35.0%
TGTTTGGTAGAAGTGAAAAC+AGG + chr7_3:66577545-66577564 Msa1118040:intron 35.0%
GTTTGGTAGAAGTGAAAACA+GGG + chr7_3:66577546-66577565 Msa1118040:intron 35.0%
AGTGAAAACAGGGATTAATC+TGG + chr7_3:66577556-66577575 Msa1118040:intron 35.0%
GTGAAAACAGGGATTAATCT+GGG + chr7_3:66577557-66577576 Msa1118040:intron 35.0%
TTCTTCAGTTCTCCTTATCT+TGG + chr7_3:66577663-66577682 Msa1118040:intron 35.0%
! TTTTTGTAGAGGCCAAGATA+AGG - chr7_3:66577678-66577697 None:intergenic 35.0%
ACATGATATGCAGACATTTG+GGG - chr7_3:66577731-66577750 None:intergenic 35.0%
!!! GTTTTTTCAGTACCAGAGAA+AGG - chr7_3:66577811-66577830 None:intergenic 35.0%
GCTTGTAAGTACTAGAGTAA+AGG + chr7_3:66577920-66577939 Msa1118040:intron 35.0%
GATCAAAGTTGTGTCCTTAT+AGG - chr7_3:66577964-66577983 None:intergenic 35.0%
TATTAAATCTGGGCATGCAA+AGG + chr7_3:66578223-66578242 Msa1118040:intron 35.0%
GAGCTTAAGCAGAAATTTCA+AGG + chr7_3:66578318-66578337 Msa1118040:intron 35.0%
!! ATTTGATGTGCCATTTGAGT+TGG + chr7_3:66578809-66578828 Msa1118040:CDS 35.0%
TGAAGTTCAACCAACTCAAA+TGG - chr7_3:66578822-66578841 None:intergenic 35.0%
TGCTAACATGAAGTTCTATC+AGG + chr7_3:66579046-66579065 Msa1118040:CDS 35.0%
AAAATGCTATCGCTAATGGA+AGG + chr7_3:66579072-66579091 Msa1118040:CDS 35.0%
AGAAGAACAAATACTGTGCT+AGG - chr7_3:66579320-66579339 None:intergenic 35.0%
! CTTCTAGTTGATTCTCAGTA+CGG + chr7_3:66579335-66579354 Msa1118040:CDS 35.0%
! TTCTAGTTGATTCTCAGTAC+GGG + chr7_3:66579336-66579355 Msa1118040:CDS 35.0%
CACTGTATTATGCAATATGC+CGG + chr7_3:66579548-66579567 Msa1118040:CDS 35.0%
! AAATCTTCAACAGAGTGCTT+GGG - chr7_3:66579578-66579597 None:intergenic 35.0%
! TAAATCTTCAACAGAGTGCT+TGG - chr7_3:66579579-66579598 None:intergenic 35.0%
TTGAAGACGTGAACTATGAT+CGG - chr7_3:66579606-66579625 None:intergenic 35.0%
TTCAAACAAGAAGAATCGAG+AGG + chr7_3:66579621-66579640 Msa1118040:CDS 35.0%
AGTTCAGGATGATTATGTCA+AGG + chr7_3:66579724-66579743 Msa1118040:CDS 35.0%
!! TTCTAACTTCATTGACTCCT+TGG - chr7_3:66579756-66579775 None:intergenic 35.0%
GAGTCAATGAAGTTAGAAGA+AGG + chr7_3:66579758-66579777 Msa1118040:CDS 35.0%
TAGAAGAAGGGTCTATGTTA+TGG + chr7_3:66579771-66579790 Msa1118040:CDS 35.0%
ATAGAAACAGATCTGTTCCT+GGG - chr7_3:66579890-66579909 None:intergenic 35.0%
TATAGAAACAGATCTGTTCC+TGG - chr7_3:66579891-66579910 None:intergenic 35.0%
AAATTCATATCTTCCCAAGC+TGG - chr7_3:66579942-66579961 None:intergenic 35.0%
CTTCCAAAGGCAATTAATTG+AGG - chr7_3:66580038-66580057 None:intergenic 35.0%
CTCAATTAATTGCCTTTGGA+AGG + chr7_3:66580036-66580055 Msa1118040:three_prime_UTR 35.0%
CTCTATCTTCAAGAATAGCA+TGG - chr7_3:66580349-66580368 None:intergenic 35.0%
GAGAAATGAAGATTCATAGC+AGG - chr7_3:66580377-66580396 None:intergenic 35.0%
! ATGCTTTATTATTCATGCGG+TGG + chr7_3:66580461-66580480 Msa1118040:three_prime_UTR 35.0%
AGATTAATTCAGCAGAAGCT+TGG + chr7_3:66580548-66580567 Msa1118040:three_prime_UTR 35.0%
ATTATGTCGACAGTCTATGT+GGG + chr7_3:66580603-66580622 Msa1118040:three_prime_UTR 35.0%
CAGCCATATGTCATAGTTTA+TGG - chr7_3:66580639-66580658 None:intergenic 35.0%
TCATGAAGATGATCATGGAA+AGG + chr7_3:66580679-66580698 Msa1118040:three_prime_UTR 35.0%
! CATTGCAGTGATTGGATTTT+TGG + chr7_3:66580779-66580798 Msa1118040:three_prime_UTR 35.0%
TTTGGGCGGTGAATAAAATA+TGG + chr7_3:66580797-66580816 Msa1118040:three_prime_UTR 35.0%
CATGCGTTTGTATTCATTGA+AGG + chr7_3:66580846-66580865 Msa1118040:three_prime_UTR 35.0%
! GTATTCATTGAAGGATTGGT+TGG + chr7_3:66580855-66580874 Msa1118040:three_prime_UTR 35.0%
! TGGTTGGTGTATTTCATCAA+AGG + chr7_3:66580871-66580890 Msa1118040:three_prime_UTR 35.0%
GAGCATATCATAATTGCCAT+TGG + chr7_3:66580893-66580912 Msa1118040:three_prime_UTR 35.0%
! ACTCTATTGGTGACATCTTT+CGG + chr7_3:66580953-66580972 Msa1118040:three_prime_UTR 35.0%
! TAGTCAGTTCCTTCATTTTG+AGG + chr7_3:66580991-66581010 Msa1118040:three_prime_UTR 35.0%
ACTCGTCAAGAACAATGAAA+TGG - chr7_3:66581048-66581067 None:intergenic 35.0%
TGCAGTGTGTACCATTTATA+TGG - chr7_3:66581169-66581188 None:intergenic 35.0%
TTAACAATACAGGCGTGTGT+TGG + chr7_3:66574612-66574631 Msa1118040:five_prime_UTR 40.0%
CTTCGTCGGCACAATAAAAA+AGG - chr7_3:66575102-66575121 None:intergenic 40.0%
!!! TGCGTTGTTTTTGGATTAGG+GGG + chr7_3:66575137-66575156 Msa1118040:intron 40.0%
CCCCAGTATATCAAATATCC+TGG - chr7_3:66575446-66575465 None:intergenic 40.0%
ATATTTGATATACTGGGGCG+TGG + chr7_3:66575448-66575467 Msa1118040:intron 40.0%
TATTTGATATACTGGGGCGT+GGG + chr7_3:66575449-66575468 Msa1118040:intron 40.0%
GTGATAACATAGGGTTCAAG+AGG - chr7_3:66575563-66575582 None:intergenic 40.0%
ACGGCTACTGTGATAACATA+GGG - chr7_3:66575572-66575591 None:intergenic 40.0%
CACGAATTGCAGAGGAATTA+AGG - chr7_3:66575653-66575672 None:intergenic 40.0%
ATTGCCAACTGGATGAAGAA+GGG - chr7_3:66575722-66575741 None:intergenic 40.0%
AATTGCCAACTGGATGAAGA+AGG - chr7_3:66575723-66575742 None:intergenic 40.0%
TTCTTCATCCAGTTGGCAAT+TGG + chr7_3:66575722-66575741 Msa1118040:intron 40.0%
TGAGTATCACCAGAAACTTC+GGG - chr7_3:66575982-66576001 None:intergenic 40.0%
! GGCTTTTATGTCCAAGTGAA+TGG + chr7_3:66576011-66576030 Msa1118040:intron 40.0%
! GTGTTGTTAATCGTGTATCG+TGG + chr7_3:66576094-66576113 Msa1118040:intron 40.0%
TCTCCAGGGGATAAATGTAT+TGG + chr7_3:66576438-66576457 Msa1118040:intron 40.0%
ACACCAATACATTTATCCCC+TGG - chr7_3:66576444-66576463 None:intergenic 40.0%
GCAGACTCAGCATTAAATTC+AGG - chr7_3:66576779-66576798 None:intergenic 40.0%
AGGTGCAAGAAGTTTACCAT+AGG + chr7_3:66576874-66576893 Msa1118040:intron 40.0%
GTTAACCGTCATACAACCTA+TGG - chr7_3:66576893-66576912 None:intergenic 40.0%
TGTATGACGGTTAACAATCC+AGG + chr7_3:66576898-66576917 Msa1118040:intron 40.0%
GTATGACGGTTAACAATCCA+GGG + chr7_3:66576899-66576918 Msa1118040:intron 40.0%
CAAATACTGTCTGCTCTGTT+AGG + chr7_3:66576925-66576944 Msa1118040:intron 40.0%
CTTAACAGTGATAAACAGGG+GGG - chr7_3:66576988-66577007 None:intergenic 40.0%
AATCAGCAAGTTCAAGTCGT+AGG - chr7_3:66577023-66577042 None:intergenic 40.0%
!! GACTTGAACTTGCTGATTGA+TGG + chr7_3:66577025-66577044 Msa1118040:intron 40.0%
ACTTCTACCAAACATGGCAA+CGG - chr7_3:66577539-66577558 None:intergenic 40.0%
GGTCATACATTCTTCACTAG+TGG - chr7_3:66577882-66577901 None:intergenic 40.0%
AGCATGTGCAAGTGTGTTAA+GGG - chr7_3:66577903-66577922 None:intergenic 40.0%
AAGCATGTGCAAGTGTGTTA+AGG - chr7_3:66577904-66577923 None:intergenic 40.0%
ATTTACCAGCAAAGAAGGGA+AGG + chr7_3:66578261-66578280 Msa1118040:intron 40.0%
TTTACCAGCAAAGAAGGGAA+GGG + chr7_3:66578262-66578281 Msa1118040:intron 40.0%
ATCAAACATGGTGCATCCTA+GGG - chr7_3:66578357-66578376 None:intergenic 40.0%
! GTAGAAGCATGAACAGCATT+AGG - chr7_3:66578897-66578916 None:intergenic 40.0%
TACAAACAAGCCGCAGAAAA+AGG - chr7_3:66579023-66579042 None:intergenic 40.0%
GCTGAAAATGCTATCGCTAA+TGG + chr7_3:66579068-66579087 Msa1118040:CDS 40.0%
TAGACATCCTCATGGGAAAT+GGG + chr7_3:66579136-66579155 Msa1118040:CDS 40.0%
! CTTCTAAGAACCGATATCAG+AGG + chr7_3:66579179-66579198 Msa1118040:CDS 40.0%
AACAGCTAGACCTCTGATAT+CGG - chr7_3:66579192-66579211 None:intergenic 40.0%
TCTCCTAGAACTGGTAAAGA+AGG - chr7_3:66579230-66579249 None:intergenic 40.0%
AATAGAGCTTCTCCTAGAAC+TGG - chr7_3:66579239-66579258 None:intergenic 40.0%
CTATTCGAATGTTGTTGGCA+AGG + chr7_3:66579264-66579283 Msa1118040:CDS 40.0%
GAGTAGACTGAGTTTCTTTC+CGG + chr7_3:66579292-66579311 Msa1118040:CDS 40.0%
ACAAATACTGTGCTAGGATC+CGG - chr7_3:66579314-66579333 None:intergenic 40.0%
! TCTAGTTGATTCTCAGTACG+GGG + chr7_3:66579337-66579356 Msa1118040:CDS 40.0%
! TTTATGAATGTGCTGCTGAG+TGG + chr7_3:66579414-66579433 Msa1118040:CDS 40.0%
! TTATGAATGTGCTGCTGAGT+GGG + chr7_3:66579415-66579434 Msa1118040:CDS 40.0%
ACAAACTTGGGAATGCAAAC+TGG + chr7_3:66579486-66579505 Msa1118040:CDS 40.0%
CAAACTTGGGAATGCAAACT+GGG + chr7_3:66579487-66579506 Msa1118040:CDS 40.0%
AAACTTGGGAATGCAAACTG+GGG + chr7_3:66579488-66579507 Msa1118040:CDS 40.0%
AATGCAAACTGGGGAGATAT+TGG + chr7_3:66579497-66579516 Msa1118040:CDS 40.0%
ATGCAAACTGGGGAGATATT+GGG + chr7_3:66579498-66579517 Msa1118040:CDS 40.0%
! TACGCTGCTGGTATTGAAAT+GGG - chr7_3:66579682-66579701 None:intergenic 40.0%
ATCCTGAACTTCGACAATCT+CGG - chr7_3:66579714-66579733 None:intergenic 40.0%
! TTATGTCAAGGTCGATTCCA+AGG + chr7_3:66579736-66579755 Msa1118040:CDS 40.0%
AGGATTCAGATGGGACAAAA+GGG + chr7_3:66579798-66579817 Msa1118040:CDS 40.0%
ATTTATGGTATCAGGTCCAG+AGG + chr7_3:66579958-66579977 Msa1118040:three_prime_UTR 40.0%
CTGCCTCAATTAATTGCCTT+TGG + chr7_3:66580032-66580051 Msa1118040:three_prime_UTR 40.0%
ATTGGACTGATCACAAGAAC+AGG - chr7_3:66580131-66580150 None:intergenic 40.0%
GTTCTTGTGATCAGTCCAAT+TGG + chr7_3:66580131-66580150 Msa1118040:three_prime_UTR 40.0%
TCTGCAACTGTTTCACCAAT+TGG - chr7_3:66580149-66580168 None:intergenic 40.0%
TGGTGAAACAGTTGCAGAAA+TGG + chr7_3:66580151-66580170 Msa1118040:three_prime_UTR 40.0%
AACAGTTGCAGAAATGGTAG+AGG + chr7_3:66580157-66580176 Msa1118040:three_prime_UTR 40.0%
TAGCGTCATCTGAACCAAAT+CGG - chr7_3:66580187-66580206 None:intergenic 40.0%
!! AGAGTGCTGATAAGCAATCA+TGG - chr7_3:66580220-66580239 None:intergenic 40.0%
CCTTCTACTGAATCTAGATC+AGG - chr7_3:66580494-66580513 None:intergenic 40.0%
CCTGATCTAGATTCAGTAGA+AGG + chr7_3:66580491-66580510 Msa1118040:three_prime_UTR 40.0%
TACAATGGAGAGAGACATCT+TGG + chr7_3:66580519-66580538 Msa1118040:three_prime_UTR 40.0%
GATTATGTCGACAGTCTATG+TGG + chr7_3:66580602-66580621 Msa1118040:three_prime_UTR 40.0%
ACTATGACATATGGCTGAGA+AGG + chr7_3:66580642-66580661 Msa1118040:three_prime_UTR 40.0%
ACATGCTAGGATTTCCAACT+GGG + chr7_3:66580713-66580732 Msa1118040:three_prime_UTR 40.0%
CTGCAATGAGAAACACGTTA+AGG - chr7_3:66580767-66580786 None:intergenic 40.0%
GTGTTTCTCATTGCAGTGAT+TGG + chr7_3:66580771-66580790 Msa1118040:three_prime_UTR 40.0%
ATCATAATTGCCATTGGTGC+AGG + chr7_3:66580899-66580918 Msa1118040:three_prime_UTR 40.0%
ATGTCACCAATAGAGTCTCA+AGG - chr7_3:66580949-66580968 None:intergenic 40.0%
ATAAATGGTACACACTGCAC+AGG + chr7_3:66581170-66581189 Msa1118040:three_prime_UTR 40.0%
TTAGGGGGAAATGCAAGACA+TGG + chr7_3:66575152-66575171 Msa1118040:intron 45.0%
TAGGGGGAAATGCAAGACAT+GGG + chr7_3:66575153-66575172 Msa1118040:intron 45.0%
! TGATTAGCTCTTCTCCTGAC+CGG + chr7_3:66575397-66575416 Msa1118040:intron 45.0%
! TTGAGTTGTACTTACCGGTC+AGG - chr7_3:66575414-66575433 None:intergenic 45.0%
TCACACACGTTGAGAATTGC+AGG - chr7_3:66575481-66575500 None:intergenic 45.0%
! TCTGGTTCAAAACAGCCTAG+TGG - chr7_3:66575510-66575529 None:intergenic 45.0%
ACATAGGGTTCAAGAGGGAT+GGG - chr7_3:66575557-66575576 None:intergenic 45.0%
AACATAGGGTTCAAGAGGGA+TGG - chr7_3:66575558-66575577 None:intergenic 45.0%
CACGGCTACTGTGATAACAT+AGG - chr7_3:66575573-66575592 None:intergenic 45.0%
CAAAACTGCACGAATTGCAG+AGG - chr7_3:66575661-66575680 None:intergenic 45.0%
! CTCTGCAATTCGTGCAGTTT+TGG + chr7_3:66575659-66575678 Msa1118040:intron 45.0%
ATACCCCTTCTTCATCCAGT+TGG + chr7_3:66575715-66575734 Msa1118040:intron 45.0%
TTGCCAACTGGATGAAGAAG+GGG - chr7_3:66575721-66575740 None:intergenic 45.0%
TCGATCTCAGTGATCATCCA+AGG + chr7_3:66575783-66575802 Msa1118040:intron 45.0%
CGATCTCAGTGATCATCCAA+GGG + chr7_3:66575784-66575803 Msa1118040:intron 45.0%
GATCTCAGTGATCATCCAAG+GGG + chr7_3:66575785-66575804 Msa1118040:intron 45.0%
CTTATGATCTTGCTACCCCT+TGG - chr7_3:66575803-66575822 None:intergenic 45.0%
ATGAGTTAGCCCGAAGTTTC+TGG + chr7_3:66575970-66575989 Msa1118040:intron 45.0%
CACATGCACAAAGGGATGAA+AGG - chr7_3:66577299-66577318 None:intergenic 45.0%
GACACACACACATGCACAAA+GGG - chr7_3:66577307-66577326 None:intergenic 45.0%
AGACACACACACATGCACAA+AGG - chr7_3:66577308-66577327 None:intergenic 45.0%
AACAGGGATAATTTGGGGGT+CGG + chr7_3:66577443-66577462 Msa1118040:intron 45.0%
! TTTAGCTCCGTTGCCATGTT+TGG + chr7_3:66577529-66577548 Msa1118040:intron 45.0%
CAAGACCAGTCTCGTAGAAA+CGG - chr7_3:66578095-66578114 None:intergenic 45.0%
TTACCAGCAAAGAAGGGAAG+GGG + chr7_3:66578263-66578282 Msa1118040:intron 45.0%
TGCTGTGCGGAGTTAATATG+TGG + chr7_3:66578286-66578305 Msa1118040:intron 45.0%
GATCAAACATGGTGCATCCT+AGG - chr7_3:66578358-66578377 None:intergenic 45.0%
CTGGGGATCTACCTACAAAT+AGG - chr7_3:66578620-66578639 None:intergenic 45.0%
! ACCCAATTGATTCCTGGTCT+GGG - chr7_3:66578638-66578657 None:intergenic 45.0%
ACCAGGAATCAATTGGGTCT+GGG + chr7_3:66578640-66578659 Msa1118040:CDS 45.0%
ATGCTGGTATTAAGGGCTTG+TGG + chr7_3:66578967-66578986 Msa1118040:CDS 45.0%
TGCTGGTATTAAGGGCTTGT+GGG + chr7_3:66578968-66578987 Msa1118040:CDS 45.0%
! TGAGCCTATGCCTTTTTCTG+CGG + chr7_3:66579010-66579029 Msa1118040:CDS 45.0%
CTAGACATCCTCATGGGAAA+TGG + chr7_3:66579135-66579154 Msa1118040:CDS 45.0%
AGATGATCCCATTTCCCATG+AGG - chr7_3:66579146-66579165 None:intergenic 45.0%
GATATCAGAGGTCTAGCTGT+TGG + chr7_3:66579191-66579210 Msa1118040:CDS 45.0%
CTAGAACTGGTAAAGAAGGC+TGG - chr7_3:66579226-66579245 None:intergenic 45.0%
CAGCCTTCTTTACCAGTTCT+AGG + chr7_3:66579224-66579243 Msa1118040:CDS 45.0%
! CTAGTTGATTCTCAGTACGG+GGG + chr7_3:66579338-66579357 Msa1118040:CDS 45.0%
GGGGGAGTTGTAAAAGTTGA+AGG + chr7_3:66579356-66579375 Msa1118040:CDS 45.0%
TGCAAACTGGGGAGATATTG+GGG + chr7_3:66579499-66579518 Msa1118040:CDS 45.0%
AGAAGAATCGAGAGGCAGTT+AGG + chr7_3:66579629-66579648 Msa1118040:CDS 45.0%
ACCACCAGAGTGAATGGAAA+TGG + chr7_3:66579656-66579675 Msa1118040:CDS 45.0%
! CTACGCTGCTGGTATTGAAA+TGG - chr7_3:66579683-66579702 None:intergenic 45.0%
TCCTGAACTTCGACAATCTC+GGG - chr7_3:66579713-66579732 None:intergenic 45.0%
AGAAGGGTCTATGTTATGGC+TGG + chr7_3:66579775-66579794 Msa1118040:CDS 45.0%
TTATGGCTGGAGGATTCAGA+TGG + chr7_3:66579788-66579807 Msa1118040:CDS 45.0%
TATGGCTGGAGGATTCAGAT+GGG + chr7_3:66579789-66579808 Msa1118040:CDS 45.0%
GAGGATTCAGATGGGACAAA+AGG + chr7_3:66579797-66579816 Msa1118040:CDS 45.0%
GCATCTTATGTTGAAGACCC+AGG + chr7_3:66579870-66579889 Msa1118040:three_prime_UTR 45.0%
TCAATACTTTGGTCTGCCTC+TGG - chr7_3:66579977-66579996 None:intergenic 45.0%
TCACAATTTCCACCAGAGCT+GGG - chr7_3:66580089-66580108 None:intergenic 45.0%
AGCACTCTCAACTGCTACAT+CGG + chr7_3:66580232-66580251 Msa1118040:three_prime_UTR 45.0%
CTAACACAGATCACGTTCTC+TGG - chr7_3:66580284-66580303 None:intergenic 45.0%
CAGAGAACGTGATCTGTGTT+AGG + chr7_3:66580282-66580301 Msa1118040:three_prime_UTR 45.0%
AACGTGATCTGTGTTAGGTC+TGG + chr7_3:66580287-66580306 Msa1118040:three_prime_UTR 45.0%
CTCATCTACTTACGCACTTC+AGG + chr7_3:66580394-66580413 Msa1118040:three_prime_UTR 45.0%
TCTACTTACGCACTTCAGGA+AGG + chr7_3:66580398-66580417 Msa1118040:three_prime_UTR 45.0%
TAGGCTTTCTGCATCAGATG+CGG - chr7_3:66580435-66580454 None:intergenic 45.0%
AGCAAAAGCTTTCAGCACAG+TGG - chr7_3:66580582-66580601 None:intergenic 45.0%
ACATATGGCTGAGAAGGTTG+AGG + chr7_3:66580648-66580667 Msa1118040:three_prime_UTR 45.0%
GGAAATTGACAGCACATGCT+AGG + chr7_3:66580700-66580719 Msa1118040:three_prime_UTR 45.0%
CACATGCTAGGATTTCCAAC+TGG + chr7_3:66580712-66580731 Msa1118040:three_prime_UTR 45.0%
TTTCAGGAATTGGACCCAGT+TGG - chr7_3:66580730-66580749 None:intergenic 45.0%
!! GCAGTGATTGGATTTTTGGG+CGG + chr7_3:66580783-66580802 Msa1118040:three_prime_UTR 45.0%
TAATTGCCATTGGTGCAGGT+TGG + chr7_3:66580903-66580922 Msa1118040:three_prime_UTR 45.0%
GTCTTGGCTCCTCAAAATGA+AGG - chr7_3:66581003-66581022 None:intergenic 45.0%
CTGCAACTGCATGAATCTCA+GGG - chr7_3:66581137-66581156 None:intergenic 45.0%
CTGAGATTCATGCAGTTGCA+GGG + chr7_3:66581136-66581155 Msa1118040:three_prime_UTR 45.0%
!!! TATTTTATTTAATTTAAAGA+GGG - chr7_3:66574670-66574689 None:intergenic 5.0%
!!! TTATTTTATTTAATTTAAAG+AGG - chr7_3:66574671-66574690 None:intergenic 5.0%
!!! TATGTTTTTTTTTTTTTTTT+TGG + chr7_3:66575214-66575233 Msa1118040:intron 5.0%
!! TAATAAAAGATATATATTAA+GGG - chr7_3:66575598-66575617 None:intergenic 5.0%
!! TTAATAAAAGATATATATTA+AGG - chr7_3:66575599-66575618 None:intergenic 5.0%
!!! AATAAATTTTAAACAATAAT+CGG + chr7_3:66576847-66576866 Msa1118040:intron 5.0%
!! CAATTATAAATTTATAATAA+AGG - chr7_3:66577491-66577510 None:intergenic 5.0%
!! CTTTATTATAAATTTATAAT+TGG + chr7_3:66577489-66577508 Msa1118040:intron 5.0%
AAGAAGGGGAAGGGGAGAAT+AGG - chr7_3:66575050-66575069 None:intergenic 50.0%
AGGGGGAAATGCAAGACATG+GGG + chr7_3:66575154-66575173 Msa1118040:intron 50.0%
GGAAATGCAAGACATGGGGA+GGG + chr7_3:66575158-66575177 Msa1118040:intron 50.0%
ACAACTCAAATGCAGCTGCC+AGG + chr7_3:66575425-66575444 Msa1118040:intron 50.0%
CGTGTGTGAGTTTCACCACT+AGG + chr7_3:66575492-66575511 Msa1118040:intron 50.0%
CATAGGGTTCAAGAGGGATG+GGG - chr7_3:66575556-66575575 None:intergenic 50.0%
GCAGACAGTATTTGACTCCC+TGG - chr7_3:66576919-66576938 None:intergenic 50.0%
GTTCAAGTCGTAGGCTAACC+AGG - chr7_3:66577014-66577033 None:intergenic 50.0%
! CTGGAGGCAGTAGCTTTTAG+TGG + chr7_3:66577416-66577435 Msa1118040:intron 50.0%
TCATGCACACACCCTTTCTC+TGG + chr7_3:66577796-66577815 Msa1118040:intron 50.0%
AGAGCAAAAGAGTAACCGCG+AGG + chr7_3:66578032-66578051 Msa1118040:intron 50.0%
GAGCAAAAGAGTAACCGCGA+GGG + chr7_3:66578033-66578052 Msa1118040:intron 50.0%
AGCAAAAGAGTAACCGCGAG+GGG + chr7_3:66578034-66578053 Msa1118040:intron 50.0%
CACATTCAGTAATCCCCTCG+CGG - chr7_3:66578050-66578069 None:intergenic 50.0%
TATGGCCGTTTCTACGAGAC+TGG + chr7_3:66578087-66578106 Msa1118040:intron 50.0%
!! CGTTTCTACGAGACTGGTCT+TGG + chr7_3:66578093-66578112 Msa1118040:intron 50.0%
TGGTGCATCCTAGGGAAGTT+GGG - chr7_3:66578349-66578368 None:intergenic 50.0%
ATGGTGCATCCTAGGGAAGT+TGG - chr7_3:66578350-66578369 None:intergenic 50.0%
TCCCCAGACCAGGAATCAAT+TGG + chr7_3:66578633-66578652 Msa1118040:CDS 50.0%
! CCCAATTGATTCCTGGTCTG+GGG - chr7_3:66578637-66578656 None:intergenic 50.0%
CCCCAGACCAGGAATCAATT+GGG + chr7_3:66578634-66578653 Msa1118040:CDS 50.0%
! GACCCAATTGATTCCTGGTC+TGG - chr7_3:66578639-66578658 None:intergenic 50.0%
GACCAGGAATCAATTGGGTC+TGG + chr7_3:66578639-66578658 Msa1118040:CDS 50.0%
! TCCCAGACCCAATTGATTCC+TGG - chr7_3:66578644-66578663 None:intergenic 50.0%
! CAATTGGGTCTGGGACAAAG+AGG + chr7_3:66578649-66578668 Msa1118040:CDS 50.0%
AAGAGGTCCAGTGTGTCATC+TGG + chr7_3:66578666-66578685 Msa1118040:CDS 50.0%
TGTCATCTGGTGGTAGGTCT+CGG + chr7_3:66578679-66578698 Msa1118040:CDS 50.0%
TGGTATTAAGGGCTTGTGGG+AGG + chr7_3:66578971-66578990 Msa1118040:CDS 50.0%
! CAAGCCGCAGAAAAAGGCAT+AGG - chr7_3:66579017-66579036 None:intergenic 50.0%
GCTATCGCTAATGGAAGGCT+TGG + chr7_3:66579077-66579096 Msa1118040:CDS 50.0%
ATCGCTAATGGAAGGCTTGG+AGG + chr7_3:66579080-66579099 Msa1118040:CDS 50.0%
GAACTGGTAAAGAAGGCTGG+CGG - chr7_3:66579223-66579242 None:intergenic 50.0%
! AACAGAGTGCTTGGGCATTC+CGG - chr7_3:66579570-66579589 None:intergenic 50.0%
GGAGATACCACCAGAGTGAA+TGG + chr7_3:66579650-66579669 Msa1118040:CDS 50.0%
GCCATTTCCATTCACTCTGG+TGG - chr7_3:66579660-66579679 None:intergenic 50.0%
TGGGCCATTTCCATTCACTC+TGG - chr7_3:66579663-66579682 None:intergenic 50.0%
CTGAACTTCGACAATCTCGG+GGG - chr7_3:66579711-66579730 None:intergenic 50.0%
CCTGAACTTCGACAATCTCG+GGG - chr7_3:66579712-66579731 None:intergenic 50.0%
AGGGTCTATGTTATGGCTGG+AGG + chr7_3:66579778-66579797 Msa1118040:CDS 50.0%
AGGGTGTATGAGCCTTCCAA+AGG - chr7_3:66580051-66580070 None:intergenic 50.0%
TTTGGAAGGCTCATACACCC+TGG + chr7_3:66580050-66580069 Msa1118040:three_prime_UTR 50.0%
TACACCCTGGTCATTGTCGA+AGG + chr7_3:66580063-66580082 Msa1118040:three_prime_UTR 50.0%
GTCACAATTTCCACCAGAGC+TGG - chr7_3:66580090-66580109 None:intergenic 50.0%
GTGGAAATTGTGACCACCCT+TGG + chr7_3:66580096-66580115 Msa1118040:three_prime_UTR 50.0%
AATTGTGACCACCCTTGGTG+TGG + chr7_3:66580101-66580120 Msa1118040:three_prime_UTR 50.0%
! ATTGTGACCACCCTTGGTGT+GGG + chr7_3:66580102-66580121 Msa1118040:three_prime_UTR 50.0%
GTTGCAGAAATGGTAGAGGC+AGG + chr7_3:66580161-66580180 Msa1118040:three_prime_UTR 50.0%
TCTGTGTTAGGTCTGGTGTG+AGG + chr7_3:66580294-66580313 Msa1118040:three_prime_UTR 50.0%
!! CAGTAGAAGGAGCGCTACAA+TGG + chr7_3:66580504-66580523 Msa1118040:three_prime_UTR 50.0%
GGAGAGAGACATCTTGGTCA+AGG + chr7_3:66580525-66580544 Msa1118040:three_prime_UTR 50.0%
CCTGCAACTGCATGAATCTC+AGG - chr7_3:66581138-66581157 None:intergenic 50.0%
CCTGAGATTCATGCAGTTGC+AGG + chr7_3:66581135-66581154 Msa1118040:three_prime_UTR 50.0%
TGCAAACGCTTGGACAGACG+CGG - chr7_3:66574639-66574658 None:intergenic 55.0%
GGATGCTAGGTGCAAACGCT+TGG - chr7_3:66574649-66574668 None:intergenic 55.0%
TCTCCCCTTCCCCTTCTTCA+CGG + chr7_3:66575052-66575071 Msa1118040:intron 55.0%
GGGAAATGCAAGACATGGGG+AGG + chr7_3:66575157-66575176 Msa1118040:intron 55.0%
CGAGCATGCCAATTGCCAAC+TGG - chr7_3:66575733-66575752 None:intergenic 55.0%
!! TTGGGGGTCGGAAGTACCAT+CGG + chr7_3:66577455-66577474 Msa1118040:intron 55.0%
TAAAGGACAAGCCAGGCCGA+TGG - chr7_3:66577474-66577493 None:intergenic 55.0%
AGGAGTCTCCCAACTTCCCT+AGG + chr7_3:66578338-66578357 Msa1118040:intron 55.0%
TGTAGGTAGATCCCCAGACC+AGG + chr7_3:66578623-66578642 Msa1118040:intron 55.0%
AGGTCCAGTGTGTCATCTGG+TGG + chr7_3:66578669-66578688 Msa1118040:CDS 55.0%
CCTACCACCAGATGACACAC+TGG - chr7_3:66578676-66578695 None:intergenic 55.0%
CCAGTGTGTCATCTGGTGGT+AGG + chr7_3:66578673-66578692 Msa1118040:CDS 55.0%
CTGGTGGTAGGTCTCGGAAT+CGG + chr7_3:66578685-66578704 Msa1118040:CDS 55.0%
TGGTAGGTCTCGGAATCGGA+AGG + chr7_3:66578689-66578708 Msa1118040:CDS 55.0%
!!! AGGGCTTGTGGGAGGCATTT+TGG + chr7_3:66578979-66578998 Msa1118040:CDS 55.0%
GGAAGGCTTGGAGGTCTTTG+TGG + chr7_3:66579089-66579108 Msa1118040:CDS 55.0%
CTTGGAGGTCTTTGTGGCAC+TGG + chr7_3:66579095-66579114 Msa1118040:CDS 55.0%
GGGAGATATTGGGGCTCTAC+AGG + chr7_3:66579508-66579527 Msa1118040:CDS 55.0%
CCCCGAGATTGTCGAAGTTC+AGG + chr7_3:66579709-66579728 Msa1118040:CDS 55.0%
! TTCCCAAGCTGGTTCCAGCT+GGG - chr7_3:66579931-66579950 None:intergenic 55.0%
TGGGCCTTCGACAATGACCA+GGG - chr7_3:66580070-66580089 None:intergenic 55.0%
GAACAGGAGTCCCACACCAA+GGG - chr7_3:66580115-66580134 None:intergenic 55.0%
AGAACAGGAGTCCCACACCA+AGG - chr7_3:66580116-66580135 None:intergenic 55.0%
ATGGTAGAGGCAGGCCGATT+TGG + chr7_3:66580170-66580189 Msa1118040:three_prime_UTR 55.0%
CTCTCAACTGCTACATCGGC+TGG + chr7_3:66580236-66580255 Msa1118040:three_prime_UTR 55.0%
! CTGCTACATCGGCTGGACTA+CGG + chr7_3:66580243-66580262 Msa1118040:three_prime_UTR 55.0%
GACTACGGCATGGAGACATC+AGG + chr7_3:66580258-66580277 Msa1118040:three_prime_UTR 55.0%
AGCAGTCCAACCTGCACCAA+TGG - chr7_3:66580912-66580931 None:intergenic 55.0%
CTCCCCTTCCCCTTCTTCAC+GGG + chr7_3:66575053-66575072 Msa1118040:intron 60.0%
TCCCCTTCCCCTTCTTCACG+GGG + chr7_3:66575054-66575073 Msa1118040:intron 60.0%
ACCCCGTGAAGAAGGGGAAG+GGG - chr7_3:66575058-66575077 None:intergenic 60.0%
CACCCCGTGAAGAAGGGGAA+GGG - chr7_3:66575059-66575078 None:intergenic 60.0%
CAGATGCTTGTCGCAGCGAC+AGG - chr7_3:66577051-66577070 None:intergenic 60.0%
GCACCCCTTCCCTTCTTTGC+TGG - chr7_3:66578269-66578288 None:intergenic 60.0%
!! AGAAGGGAAGGGGTGCTGTG+CGG + chr7_3:66578273-66578292 Msa1118040:intron 60.0%
! CAAGCTGGTTCCAGCTGGGA+GGG - chr7_3:66579927-66579946 None:intergenic 60.0%
CTCCCAGCTGGAACCAGCTT+GGG + chr7_3:66579926-66579945 Msa1118040:three_prime_UTR 60.0%
! CTTCCCAAGCTGGTTCCAGC+TGG - chr7_3:66579932-66579951 None:intergenic 60.0%
CTGGGCCTTCGACAATGACC+AGG - chr7_3:66580071-66580090 None:intergenic 60.0%
CATTGTCGAAGGCCCAGCTC+TGG + chr7_3:66580074-66580093 Msa1118040:three_prime_UTR 60.0%
! ACATCGGCTGGACTACGGCA+TGG + chr7_3:66580248-66580267 Msa1118040:three_prime_UTR 60.0%
CCACCCCGTGAAGAAGGGGA+AGG - chr7_3:66575060-66575079 None:intergenic 65.0%
CCTTCCCCTTCTTCACGGGG+TGG + chr7_3:66575057-66575076 Msa1118040:intron 65.0%
TCCCCTTCTTCACGGGGTGG+AGG + chr7_3:66575060-66575079 Msa1118040:intron 65.0%
CCCTCCACCCCGTGAAGAAG+GGG - chr7_3:66575064-66575083 None:intergenic 65.0%
CCCCTTCTTCACGGGGTGGA+GGG + chr7_3:66575061-66575080 Msa1118040:intron 65.0%
GCCCTCCACCCCGTGAAGAA+GGG - chr7_3:66575065-66575084 None:intergenic 65.0%
AGCCCTCCACCCCGTGAAGA+AGG - chr7_3:66575066-66575085 None:intergenic 65.0%
!! GGTCGGAAGTACCATCGGCC+TGG + chr7_3:66577460-66577479 Msa1118040:intron 65.0%
CGGGGGAAACACTACGCTGC+TGG - chr7_3:66579694-66579713 None:intergenic 65.0%
! CCAAGCTGGTTCCAGCTGGG+AGG - chr7_3:66579928-66579947 None:intergenic 65.0%
CCTCCCAGCTGGAACCAGCT+TGG + chr7_3:66579925-66579944 Msa1118040:three_prime_UTR 65.0%
! TGTCGAAGGCCCAGCTCTGG+TGG + chr7_3:66580077-66580096 Msa1118040:three_prime_UTR 65.0%
CAGGAGTCCCACACCAAGGG+TGG - chr7_3:66580112-66580131 None:intergenic 65.0%
GGGCTCTCATCCCTCCCAGC+TGG + chr7_3:66579914-66579933 Msa1118040:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 66574610 66581284 66574610 ID=Msa1118040;Name=Msa1118040
chr7_3 mRNA 66574610 66581284 66574610 ID=Msa1118040-mRNA-1;Parent=Msa1118040;Name=Msa1118040-mRNA-1;_AED=0.02;_eAED=0.02;_QI=152|0|0.66|0.66|1|1|3|1431|412
chr7_3 exon 66574610 66574768 66574610 ID=Msa1118040-mRNA-1:exon:16107;Parent=Msa1118040-mRNA-1
chr7_3 exon 66578147 66578152 66578147 ID=Msa1118040-mRNA-1:exon:16108;Parent=Msa1118040-mRNA-1
chr7_3 exon 66578628 66581284 66578628 ID=Msa1118040-mRNA-1:exon:16109;Parent=Msa1118040-mRNA-1
chr7_3 five_prime_UTR 66574610 66574761 66574610 ID=Msa1118040-mRNA-1:five_prime_utr;Parent=Msa1118040-mRNA-1
chr7_3 CDS 66574762 66574768 66574762 ID=Msa1118040-mRNA-1:cds;Parent=Msa1118040-mRNA-1
chr7_3 CDS 66578147 66578152 66578147 ID=Msa1118040-mRNA-1:cds;Parent=Msa1118040-mRNA-1
chr7_3 CDS 66578628 66579853 66578628 ID=Msa1118040-mRNA-1:cds;Parent=Msa1118040-mRNA-1
chr7_3 three_prime_UTR 66579854 66581284 66579854 ID=Msa1118040-mRNA-1:three_prime_utr;Parent=Msa1118040-mRNA-1
Gene Sequence

>Msa1118040

ATGCAAGTCGACGGTAGATCCCCAGACCAGGAATCAATTGGGTCTGGGACAAAGAGGTCCAGTGTGTCATCTGGTGGTAGGTCTCGGAATCGGAAGGAGTTTTTCTATAAATTTGTTGATAGTGACGGTCTGAATGAAAAACTTGTAGATTGGTTTGAATCTGTAACAGAAAAATATACATTGAAACAGCAAGCATTTGATGTGCCATTTGAGTTGGTTGAACTTCAAAAATTTGATTATGCATTAGAGGGGATTTCATTTCAGCAGCTCACACGCATGCCTAATGCTGTTCATGCTTCTACATCTGAAGCTGTAGAAGCAACAGCTTGTCTTGCTATTGAAGATTTTCTACATGCTGGTATTAAGGGCTTGTGGGAGGCATTTTGGAGTCAAGATGAGCCTATGCCTTTTTCTGCGGCTTGTTTGTATAATGCTAACATGAAGTTCTATCAGGCTGAAAATGCTATCGCTAATGGAAGGCTTGGAGGTCTTTGTGGCACTGGTATATTGCTTAATAATTCTAGACATCCTCATGGGAAATGGGATCATCTCCTTGAATTAACGCTTCTAAGAACCGATATCAGAGGTCTAGCTGTTGGCAGTGACCGCCAGCCTTCTTTACCAGTTCTAGGAGAAGCTCTATTTTATGCTATTCGAATGTTGTTGGCAAGGAGTTTGAGTAGACTGAGTTTCTTTCCGGATCCTAGCACAGTATTTGTTCTTCTAGTTGATTCTCAGTACGGGGGAGTTGTAAAAGTTGAAGGAGATGTAAGTAAGCTCAATTTTGATGTGAATAATGTTTATGAATGTGCTGCTGAGTGGGTACAAAATCATTCTAGAATTTCTGTTTCTCCAATTTATAGAATCTGGAACAAACTTGGGAATGCAAACTGGGGAGATATTGGGGCTCTACAGGTTTTATTTGCAACCTTTCACTGTATTATGCAATATGCCGGAATGCCCAAGCACTCTGTTGAAGATTTAGCTGCCGATCATAGTTCACGTCTTCAAACAAGAAGAATCGAGAGGCAGTTAGGAGATACCACCAGAGTGAATGGAAATGGCCCATTTCAATACCAGCAGCGTAGTGTTTCCCCCGAGATTGTCGAAGTTCAGGATGATTATGTCAAGGTCGATTCCAAGGAGTCAATGAAGTTAGAAGAAGGGTCTATGTTATGGCTGGAGGATTCAGATGGGACAAAAGGGTTATCAAATACAAGAAGTAATCAAAACTGGTGA
Protein sequence

>Msa1118040

MQVDGRSPDQESIGSGTKRSSVSSGGRSRNRKEFFYKFVDSDGLNEKLVDWFESVTEKYTLKQQAFDVPFELVELQKFDYALEGISFQQLTRMPNAVHASTSEAVEATACLAIEDFLHAGIKGLWEAFWSQDEPMPFSAACLYNANMKFYQAENAIANGRLGGLCGTGILLNNSRHPHGKWDHLLELTLLRTDIRGLAVGSDRQPSLPVLGEALFYAIRMLLARSLSRLSFFPDPSTVFVLLVDSQYGGVVKVEGDVSKLNFDVNNVYECAAEWVQNHSRISVSPIYRIWNKLGNANWGDIGALQVLFATFHCIMQYAGMPKHSVEDLAADHSSRLQTRRIERQLGDTTRVNGNGPFQYQQRSVSPEIVEVQDDYVKVDSKESMKLEEGSMLWLEDSDGTKGLSNTRSNQNW*