AlfalfaGEDB | Msa1126880

M. sativa cultivar zhongmu-4 / Msa1126880

KEGG: K17573
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126880	XP_003626041.2	61.272	173	21	4	1	127	282	454	2.05e-46	166

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126880	A4PU36	61.272	173	21	4	1	127	282	454	9.78e-47	166

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015390	Msa1126880	0.801748	7.776368e-49	-8.615850e-47
Msa0084380	Msa1126880	0.806773	6.988269e-50	-8.615850e-47
Msa0104800	Msa1126880	0.816207	6.227168e-52	-8.615850e-47
Msa0112770	Msa1126880	0.810567	1.081079e-50	-8.615850e-47
Msa0685920	Msa1126880	0.806100	9.690045e-50	-8.615850e-47
Msa0693380	Msa1126880	0.817967	2.504927e-52	-8.615850e-47
Msa0721280	Msa1126880	0.819265	1.271710e-52	-8.615850e-47
Msa0750240	Msa1126880	0.804371	2.231139e-49	-8.615850e-47
Msa0773590	Msa1126880	0.801842	7.438987e-49	-8.615850e-47
Msa0810220	Msa1126880	0.802565	5.282465e-49	-8.615850e-47
Msa0820850	Msa1126880	0.827383	1.612324e-54	-8.615850e-47
Msa0830510	Msa1126880	0.833442	5.319700e-56	-8.615850e-47
Msa0832340	Msa1126880	0.818964	1.488970e-52	-8.615850e-47
Msa0840820	Msa1126880	0.821385	4.153537e-53	-8.615850e-47
Msa0140500	Msa1126880	-0.810218	1.285523e-50	-8.615850e-47
Msa0151180	Msa1126880	0.807538	4.813085e-50	-8.615850e-47
Msa0381610	Msa1126880	-0.812435	4.246055e-51	-8.615850e-47
Msa0410650	Msa1126880	0.800060	1.720708e-48	-8.615850e-47
Msa0479970	Msa1126880	0.807736	4.369450e-50	-8.615850e-47
Msa1063420	Msa1126880	0.813020	3.162450e-51	-8.615850e-47
Msa1081880	Msa1126880	0.827652	1.389882e-54	-8.615850e-47
Msa1082500	Msa1126880	0.811908	5.533668e-51	-8.615850e-47
Msa1085200	Msa1126880	0.806779	6.969207e-50	-8.615850e-47
Msa0306210	Msa1126880	-0.806210	9.186070e-50	-8.615850e-47
Msa0326520	Msa1126880	0.806530	7.867057e-50	-8.615850e-47
Msa0334360	Msa1126880	0.814518	1.478838e-51	-8.615850e-47
Msa0346700	Msa1126880	0.804554	2.043571e-49	-8.615850e-47
Msa0363680	Msa1126880	0.812397	4.328226e-51	-8.615850e-47
Msa0363790	Msa1126880	0.809749	1.622770e-50	-8.615850e-47
Msa1113170	Msa1126880	0.810654	1.034988e-50	-8.615850e-47
Msa1121440	Msa1126880	0.800407	1.462436e-48	-8.615850e-47
Msa1126880	Msa1126950	0.980501	2.304162e-150	-8.615850e-47
Msa1126880	Msa1127010	0.966626	3.578319e-126	-8.615850e-47
Msa1126880	Msa1165990	0.932755	5.282235e-95	-8.615850e-47
Msa1126880	Msa1348880	0.800904	1.157733e-48	-8.615850e-47
Msa1126880	Msa1353470	0.809254	2.071833e-50	-8.615850e-47
Msa1126880	Msa1353980	0.808582	2.885002e-50	-8.615850e-47
Msa1126880	Msa1357890	0.819478	1.137455e-52	-8.615850e-47
Msa1126880	Msa1398090	0.815437	9.248082e-52	-8.615850e-47
Msa1126880	Msa1445390	-0.808882	2.488885e-50	-8.615850e-47
Msa1126880	Msa1449340	-0.815081	1.109999e-51	-8.615850e-47
Msa0484780	Msa1126880	0.802691	4.975847e-49	-8.615850e-47
Msa0581160	Msa1126880	0.986275	3.003093e-166	-8.615850e-47
Msa0592440	Msa1126880	0.801839	7.449484e-49	-8.615850e-47
Msa0861130	Msa1126880	0.824160	9.384086e-54	-8.615850e-47
Msa0894710	Msa1126880	0.802398	5.716396e-49	-8.615850e-47
Msa0962840	Msa1126880	0.834307	3.232274e-56	-8.615850e-47
Msa0964310	Msa1126880	0.810075	1.380527e-50	-8.615850e-47
Msa0969520	Msa1126880	0.812174	4.840303e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126880	MtrunA17_Chr7g0270601	61.272	173	21	4	1	127	282	454	1.88e-50	166
Msa1126880	MtrunA17_Chr7g0269191	69.697	99	19	3	40	127	1	99	7.92e-29	101
Msa1126880	MtrunA17_Chr7g0271391	39.167	120	63	3	18	127	504	623	3.99e-22	90.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126880	AT3G62200.1	36.054	147	74	4	1	127	505	651	3.90e-21	88.2

Find 39 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCTTCATTTATCGGCAATTT+TGG	0.159196	7_3:+78434540	Msa1126880:CDS
GTACATTCCCATCTGCTTAC+TGG	0.214575	7_3:+78434998	Msa1126880:three_prime_UTR
GTACATTTCAATCTGCTTAC+TGG	0.250536	7_3:+78435058	Msa1126880:three_prime_UTR
CAATTCCTTGCTTCATTTAT+CGG	0.255799	7_3:+78434531	Msa1126880:CDS
CGTGGTTCCCAGACGCAATC+TGG	0.270910	7_3:+78434496	Msa1126880:CDS
TTAGCCTCTGTAAGTGAAAA+TGG	0.275804	7_3:-78434807	None:intergenic
GGGTGATGTACTTAAGATTT+TGG	0.277803	7_3:+78434724	Msa1126880:CDS
GATGACACAGATAGTGATTC+TGG	0.347850	7_3:+78434841	Msa1126880:three_prime_UTR
AAGGTGGTTAAACGAGTCTT+TGG	0.382873	7_3:+78434417	Msa1126880:intron
ATCCTAACCCAGATTGCGTC+TGG	0.396295	7_3:-78434504	None:intergenic
TTATACCTTGTCATTCTAGA+TGG	0.412658	7_3:+78434774	Msa1126880:CDS
GAATACACTGATGAATGAAA+TGG	0.416796	7_3:+78434290	Msa1126880:CDS
CTGTAAGTGAAAATGGTAAT+CGG	0.431067	7_3:-78434800	None:intergenic
TTGTTGCAAATGAGAATCTA+TGG	0.442211	7_3:+78434457	Msa1126880:CDS
TTATAATCACAATCAAGAAA+TGG	0.466378	7_3:+78434750	Msa1126880:CDS
CCTCTACATATCTCTAACTA+CGG	0.467900	7_3:-78434924	None:intergenic
TTGCGTCTGGGAACCACGTA+AGG	0.473407	7_3:-78434491	None:intergenic
TCCCAGACGCAATCTGGGTT+AGG	0.483088	7_3:+78434502	Msa1126880:CDS
AGCAGATGGGAATGTACAAA+AGG	0.496986	7_3:-78434992	None:intergenic
TGTCTTGAAGAGCTTGTGTT+GGG	0.501883	7_3:+78434704	Msa1126880:CDS
CATTTCAATCTGCTTACTGG+TGG	0.505776	7_3:+78435061	Msa1126880:three_prime_UTR
ATTCCCATCTGCTTACTGGT+GGG	0.506945	7_3:+78435002	Msa1126880:three_prime_UTR
TGAGAATTTGCAAGGACTTG+TGG	0.513544	7_3:+78434248	Msa1126880:CDS
CATTCCCATCTGCTTACTGG+TGG	0.519665	7_3:+78435001	Msa1126880:three_prime_UTR
TTCCCATCTGCTTACTGGTG+GGG	0.524628	7_3:+78435003	Msa1126880:three_prime_UTR
GTGTCTTGAAGAGCTTGTGT+TGG	0.527052	7_3:+78434703	Msa1126880:CDS
GTGGTTCCCAGACGCAATCT+GGG	0.539558	7_3:+78434497	Msa1126880:CDS
AGTCCCCACCAGTAAGCAGA+TGG	0.550048	7_3:-78435006	None:intergenic
TCCTAACCCAGATTGCGTCT+GGG	0.566146	7_3:-78434503	None:intergenic
GAGATATGTAGAGGAATTCG+TGG	0.572067	7_3:+78434933	Msa1126880:three_prime_UTR
CCGTAGTTAGAGATATGTAG+AGG	0.580945	7_3:+78434924	Msa1126880:three_prime_UTR
TGCGTCTGGGAACCACGTAA+GGG	0.598064	7_3:-78434490	None:intergenic
GTCCCCACCAGTAAGCAGAT+GGG	0.623279	7_3:-78435005	None:intergenic
AATTGCCGATAAATGAAGCA+AGG	0.623661	7_3:-78434536	None:intergenic
AAACTACGTGAGCTTTGACA+TGG	0.629175	7_3:+78434889	Msa1126880:three_prime_UTR
TCAACACATGAGAATTTGCA+AGG	0.634115	7_3:+78434240	Msa1126880:CDS
GCGTCTGGGAACCACGTAAG+GGG	0.647796	7_3:-78434489	None:intergenic
GGAAGTGTGAACCCCTTACG+TGG	0.663822	7_3:+78434478	Msa1126880:CDS
GGCTGCCATCTAGAATGACA+AGG	0.705174	7_3:-78434779	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACATATAATAAAAGACAAA+AGG	-	chr7_3:78434645-78434664	None:intergenic	15.0%
!!	AACATATAATAAAAGACAAA+AGG	-	chr7_3:78434645-78434664	None:intergenic	15.0%
!!	ATATCAAATGTCTCATATTT+GGG	-	chr7_3:78434363-78434382	None:intergenic	20.0%
!!	AATATCAAATGTCTCATATT+TGG	-	chr7_3:78434364-78434383	None:intergenic	20.0%
!!	AATATGAGACATTTGATATT+AGG	+	chr7_3:78434364-78434383	Msa1126880:intron	20.0%
!!	TTATAATCACAATCAAGAAA+TGG	+	chr7_3:78434750-78434769	Msa1126880:CDS	20.0%
!!	ATATCAAATGTCTCATATTT+GGG	-	chr7_3:78434363-78434382	None:intergenic	20.0%
!!	AATATCAAATGTCTCATATT+TGG	-	chr7_3:78434364-78434383	None:intergenic	20.0%
!!	AATATGAGACATTTGATATT+AGG	+	chr7_3:78434364-78434383	Msa1126880:intron	20.0%
!!	TTATAATCACAATCAAGAAA+TGG	+	chr7_3:78434750-78434769	Msa1126880:CDS	20.0%
!	GCAATCAATTATATTTCCTT+CGG	-	chr7_3:78434325-78434344	None:intergenic	25.0%
!	ATAATTGATTGCATTCGTTA+TGG	+	chr7_3:78434333-78434352	Msa1126880:intron	25.0%
!!!	TATTGTTTTTCTTAGTTCCT+TGG	+	chr7_3:78434585-78434604	Msa1126880:intron	25.0%
!	GCAATCAATTATATTTCCTT+CGG	-	chr7_3:78434325-78434344	None:intergenic	25.0%
!	ATAATTGATTGCATTCGTTA+TGG	+	chr7_3:78434333-78434352	Msa1126880:intron	25.0%
!!!	TATTGTTTTTCTTAGTTCCT+TGG	+	chr7_3:78434585-78434604	Msa1126880:intron	25.0%
	GAATACACTGATGAATGAAA+TGG	+	chr7_3:78434290-78434309	Msa1126880:CDS	30.0%
	TCAATTATATTTCCTTCGGT+AGG	-	chr7_3:78434321-78434340	None:intergenic	30.0%
	TGAGACATTTGATATTAGGA+AGG	+	chr7_3:78434368-78434387	Msa1126880:intron	30.0%
	GAGACATTTGATATTAGGAA+GGG	+	chr7_3:78434369-78434388	Msa1126880:intron	30.0%
	TTGTTGCAAATGAGAATCTA+TGG	+	chr7_3:78434457-78434476	Msa1126880:CDS	30.0%
	CAATTCCTTGCTTCATTTAT+CGG	+	chr7_3:78434531-78434550	Msa1126880:CDS	30.0%
	TAACAAGTAATAAAGCTCCA+AGG	-	chr7_3:78434605-78434624	None:intergenic	30.0%
	TTATACCTTGTCATTCTAGA+TGG	+	chr7_3:78434774-78434793	Msa1126880:CDS	30.0%
	CTGTAAGTGAAAATGGTAAT+CGG	-	chr7_3:78434803-78434822	None:intergenic	30.0%
!	ATTACCATTTTCACTTACAG+AGG	+	chr7_3:78434803-78434822	Msa1126880:CDS	30.0%
	GAATACACTGATGAATGAAA+TGG	+	chr7_3:78434290-78434309	Msa1126880:CDS	30.0%
	TCAATTATATTTCCTTCGGT+AGG	-	chr7_3:78434321-78434340	None:intergenic	30.0%
	TGAGACATTTGATATTAGGA+AGG	+	chr7_3:78434368-78434387	Msa1126880:intron	30.0%
	GAGACATTTGATATTAGGAA+GGG	+	chr7_3:78434369-78434388	Msa1126880:intron	30.0%
	TTGTTGCAAATGAGAATCTA+TGG	+	chr7_3:78434457-78434476	Msa1126880:CDS	30.0%
	CAATTCCTTGCTTCATTTAT+CGG	+	chr7_3:78434531-78434550	Msa1126880:CDS	30.0%
	TAACAAGTAATAAAGCTCCA+AGG	-	chr7_3:78434605-78434624	None:intergenic	30.0%
	TTATACCTTGTCATTCTAGA+TGG	+	chr7_3:78434774-78434793	Msa1126880:CDS	30.0%
	CTGTAAGTGAAAATGGTAAT+CGG	-	chr7_3:78434803-78434822	None:intergenic	30.0%
!	ATTACCATTTTCACTTACAG+AGG	+	chr7_3:78434803-78434822	Msa1126880:CDS	30.0%
	TCAACACATGAGAATTTGCA+AGG	+	chr7_3:78434240-78434259	Msa1126880:CDS	35.0%
	AATTGCCGATAAATGAAGCA+AGG	-	chr7_3:78434539-78434558	None:intergenic	35.0%
!	GCTTCATTTATCGGCAATTT+TGG	+	chr7_3:78434540-78434559	Msa1126880:CDS	35.0%
!	GGGTGATGTACTTAAGATTT+TGG	+	chr7_3:78434724-78434743	Msa1126880:CDS	35.0%
	TTAGCCTCTGTAAGTGAAAA+TGG	-	chr7_3:78434810-78434829	None:intergenic	35.0%
	CCTCTACATATCTCTAACTA+CGG	-	chr7_3:78434927-78434946	None:intergenic	35.0%
	GTACATTTCAATCTGCTTAC+TGG	+	chr7_3:78435058-78435077	Msa1126880:three_prime_UTR	35.0%
!!!	CTTACTGGTGGATTTTTTGA+TGG	+	chr7_3:78435073-78435092	Msa1126880:three_prime_UTR	35.0%
	TCAACACATGAGAATTTGCA+AGG	+	chr7_3:78434240-78434259	Msa1126880:CDS	35.0%
	AATTGCCGATAAATGAAGCA+AGG	-	chr7_3:78434539-78434558	None:intergenic	35.0%
!	GCTTCATTTATCGGCAATTT+TGG	+	chr7_3:78434540-78434559	Msa1126880:CDS	35.0%
!	GGGTGATGTACTTAAGATTT+TGG	+	chr7_3:78434724-78434743	Msa1126880:CDS	35.0%
	TTAGCCTCTGTAAGTGAAAA+TGG	-	chr7_3:78434810-78434829	None:intergenic	35.0%
	CCTCTACATATCTCTAACTA+CGG	-	chr7_3:78434927-78434946	None:intergenic	35.0%
	GTACATTTCAATCTGCTTAC+TGG	+	chr7_3:78435058-78435077	Msa1126880:three_prime_UTR	35.0%
!!!	CTTACTGGTGGATTTTTTGA+TGG	+	chr7_3:78435073-78435092	Msa1126880:three_prime_UTR	35.0%
	TGAGAATTTGCAAGGACTTG+TGG	+	chr7_3:78434248-78434267	Msa1126880:CDS	40.0%
!	GAAATGGTTTTTCCTACCGA+AGG	+	chr7_3:78434306-78434325	Msa1126880:intron	40.0%
	TTGTGCAATTGAGCAACAGA+AGG	+	chr7_3:78434398-78434417	Msa1126880:intron	40.0%
	AAGGTGGTTAAACGAGTCTT+TGG	+	chr7_3:78434417-78434436	Msa1126880:intron	40.0%
!!	CAATTTTGGCGTCTTGTAAC+AGG	+	chr7_3:78434554-78434573	Msa1126880:intron	40.0%
	TGTCTTGAAGAGCTTGTGTT+GGG	+	chr7_3:78434704-78434723	Msa1126880:CDS	40.0%
	GATGACACAGATAGTGATTC+TGG	+	chr7_3:78434841-78434860	Msa1126880:three_prime_UTR	40.0%
!	AAACTACGTGAGCTTTGACA+TGG	+	chr7_3:78434889-78434908	Msa1126880:three_prime_UTR	40.0%
	CCGTAGTTAGAGATATGTAG+AGG	+	chr7_3:78434924-78434943	Msa1126880:three_prime_UTR	40.0%
	GAGATATGTAGAGGAATTCG+TGG	+	chr7_3:78434933-78434952	Msa1126880:three_prime_UTR	40.0%
	AGCAGATGGGAATGTACAAA+AGG	-	chr7_3:78434995-78435014	None:intergenic	40.0%
	CATTTCAATCTGCTTACTGG+TGG	+	chr7_3:78435061-78435080	Msa1126880:three_prime_UTR	40.0%
	TGAGAATTTGCAAGGACTTG+TGG	+	chr7_3:78434248-78434267	Msa1126880:CDS	40.0%
!	GAAATGGTTTTTCCTACCGA+AGG	+	chr7_3:78434306-78434325	Msa1126880:intron	40.0%
	TTGTGCAATTGAGCAACAGA+AGG	+	chr7_3:78434398-78434417	Msa1126880:intron	40.0%
	AAGGTGGTTAAACGAGTCTT+TGG	+	chr7_3:78434417-78434436	Msa1126880:intron	40.0%
!!	CAATTTTGGCGTCTTGTAAC+AGG	+	chr7_3:78434554-78434573	Msa1126880:intron	40.0%
	TGTCTTGAAGAGCTTGTGTT+GGG	+	chr7_3:78434704-78434723	Msa1126880:CDS	40.0%
	GATGACACAGATAGTGATTC+TGG	+	chr7_3:78434841-78434860	Msa1126880:three_prime_UTR	40.0%
!	AAACTACGTGAGCTTTGACA+TGG	+	chr7_3:78434889-78434908	Msa1126880:three_prime_UTR	40.0%
	CCGTAGTTAGAGATATGTAG+AGG	+	chr7_3:78434924-78434943	Msa1126880:three_prime_UTR	40.0%
	GAGATATGTAGAGGAATTCG+TGG	+	chr7_3:78434933-78434952	Msa1126880:three_prime_UTR	40.0%
	AGCAGATGGGAATGTACAAA+AGG	-	chr7_3:78434995-78435014	None:intergenic	40.0%
	CATTTCAATCTGCTTACTGG+TGG	+	chr7_3:78435061-78435080	Msa1126880:three_prime_UTR	40.0%
	TGCAATTGAGCAACAGAAGG+TGG	+	chr7_3:78434401-78434420	Msa1126880:intron	45.0%
	GTGTCTTGAAGAGCTTGTGT+TGG	+	chr7_3:78434703-78434722	Msa1126880:CDS	45.0%
	GTACATTCCCATCTGCTTAC+TGG	+	chr7_3:78434998-78435017	Msa1126880:three_prime_UTR	45.0%
	ATTCCCATCTGCTTACTGGT+GGG	+	chr7_3:78435002-78435021	Msa1126880:three_prime_UTR	45.0%
!	TACTGGTGGGGACTTTTTGT+TGG	+	chr7_3:78435015-78435034	Msa1126880:three_prime_UTR	45.0%
	TGCAATTGAGCAACAGAAGG+TGG	+	chr7_3:78434401-78434420	Msa1126880:intron	45.0%
	GTGTCTTGAAGAGCTTGTGT+TGG	+	chr7_3:78434703-78434722	Msa1126880:CDS	45.0%
	GTACATTCCCATCTGCTTAC+TGG	+	chr7_3:78434998-78435017	Msa1126880:three_prime_UTR	45.0%
	ATTCCCATCTGCTTACTGGT+GGG	+	chr7_3:78435002-78435021	Msa1126880:three_prime_UTR	45.0%
!	TACTGGTGGGGACTTTTTGT+TGG	+	chr7_3:78435015-78435034	Msa1126880:three_prime_UTR	45.0%
	TCCTAACCCAGATTGCGTCT+GGG	-	chr7_3:78434506-78434525	None:intergenic	50.0%
	ATCCTAACCCAGATTGCGTC+TGG	-	chr7_3:78434507-78434526	None:intergenic	50.0%
!	GGCTGCCATCTAGAATGACA+AGG	-	chr7_3:78434782-78434801	None:intergenic	50.0%
	CATTCCCATCTGCTTACTGG+TGG	+	chr7_3:78435001-78435020	Msa1126880:three_prime_UTR	50.0%
	TTCCCATCTGCTTACTGGTG+GGG	+	chr7_3:78435003-78435022	Msa1126880:three_prime_UTR	50.0%
	TCCTAACCCAGATTGCGTCT+GGG	-	chr7_3:78434506-78434525	None:intergenic	50.0%
	ATCCTAACCCAGATTGCGTC+TGG	-	chr7_3:78434507-78434526	None:intergenic	50.0%
!	GGCTGCCATCTAGAATGACA+AGG	-	chr7_3:78434782-78434801	None:intergenic	50.0%
	CATTCCCATCTGCTTACTGG+TGG	+	chr7_3:78435001-78435020	Msa1126880:three_prime_UTR	50.0%
	TTCCCATCTGCTTACTGGTG+GGG	+	chr7_3:78435003-78435022	Msa1126880:three_prime_UTR	50.0%
!	GGAAGTGTGAACCCCTTACG+TGG	+	chr7_3:78434478-78434497	Msa1126880:CDS	55.0%
	TGCGTCTGGGAACCACGTAA+GGG	-	chr7_3:78434493-78434512	None:intergenic	55.0%
	TTGCGTCTGGGAACCACGTA+AGG	-	chr7_3:78434494-78434513	None:intergenic	55.0%
	GTGGTTCCCAGACGCAATCT+GGG	+	chr7_3:78434497-78434516	Msa1126880:CDS	55.0%
	TCCCAGACGCAATCTGGGTT+AGG	+	chr7_3:78434502-78434521	Msa1126880:CDS	55.0%
	GTCCCCACCAGTAAGCAGAT+GGG	-	chr7_3:78435008-78435027	None:intergenic	55.0%
	AGTCCCCACCAGTAAGCAGA+TGG	-	chr7_3:78435009-78435028	None:intergenic	55.0%
!	GGAAGTGTGAACCCCTTACG+TGG	+	chr7_3:78434478-78434497	Msa1126880:CDS	55.0%
	TGCGTCTGGGAACCACGTAA+GGG	-	chr7_3:78434493-78434512	None:intergenic	55.0%
	TTGCGTCTGGGAACCACGTA+AGG	-	chr7_3:78434494-78434513	None:intergenic	55.0%
	GTGGTTCCCAGACGCAATCT+GGG	+	chr7_3:78434497-78434516	Msa1126880:CDS	55.0%
	TCCCAGACGCAATCTGGGTT+AGG	+	chr7_3:78434502-78434521	Msa1126880:CDS	55.0%
	GTCCCCACCAGTAAGCAGAT+GGG	-	chr7_3:78435008-78435027	None:intergenic	55.0%
	AGTCCCCACCAGTAAGCAGA+TGG	-	chr7_3:78435009-78435028	None:intergenic	55.0%
	GCGTCTGGGAACCACGTAAG+GGG	-	chr7_3:78434492-78434511	None:intergenic	60.0%
	CGTGGTTCCCAGACGCAATC+TGG	+	chr7_3:78434496-78434515	Msa1126880:CDS	60.0%
	GCGTCTGGGAACCACGTAAG+GGG	-	chr7_3:78434492-78434511	None:intergenic	60.0%
	CGTGGTTCCCAGACGCAATC+TGG	+	chr7_3:78434496-78434515	Msa1126880:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	78434219	78435110	78434219	ID=Msa1126880;Name=Msa1126880
chr7_3	mRNA	78434219	78435110	78434219	ID=Msa1126880-mRNA-1;Parent=Msa1126880;Name=Msa1126880-mRNA-1;_AED=0.13;_eAED=0.18;_QI=0\|0\|0.33\|1\|0.5\|0.33\|3\|281\|132
chr7_3	exon	78434219	78434311	78434219	ID=Msa1126880-mRNA-1:exon:21893;Parent=Msa1126880-mRNA-1
chr7_3	exon	78434420	78434568	78434420	ID=Msa1126880-mRNA-1:exon:21894;Parent=Msa1126880-mRNA-1
chr7_3	exon	78434673	78435110	78434673	ID=Msa1126880-mRNA-1:exon:21895;Parent=Msa1126880-mRNA-1
chr7_3	CDS	78434219	78434311	78434219	ID=Msa1126880-mRNA-1:cds;Parent=Msa1126880-mRNA-1
chr7_3	CDS	78434420	78434568	78434420	ID=Msa1126880-mRNA-1:cds;Parent=Msa1126880-mRNA-1
chr7_3	CDS	78434673	78434829	78434673	ID=Msa1126880-mRNA-1:cds;Parent=Msa1126880-mRNA-1
chr7_3	three_prime_UTR	78434830	78435110	78434830	ID=Msa1126880-mRNA-1:three_prime_utr;Parent=Msa1126880-mRNA-1

Gene Sequence

>Msa1126880

TTAGAGACTTTGAAAACAATATCAACACATGAGAATTTGCAAGGACTTGTGGATATTATTCTAGTCACTTCGAATACACTGATGAATGAAATGGTGGTTAAACGAGTCTTTGGCACATTACGTTTGTATGTTGTTGCAAATGAGAATCTATGGAAGTGTGAACCCCTTACGTGGTTCCCAGACGCAATCTGGGTTAGGATAGAGCAATTCCTTGCTTCATTTATCGGCAATTTTGGCGTCTTATATGAAGCTTCATTAATTCTAAAGAGATTGTGTCTTGAAGAGCTTGTGTTGGGTGATGTACTTAAGATTTTGGAGATTATAATCACAATCAAGAAATGGATTATACCTTGTCATTCTAGATGGCAGCCGATTACCATTTTCACTTACAGAGGCTAA

Protein sequence

>Msa1126880

LETLKTISTHENLQGLVDIILVTSNTLMNEMVVKRVFGTLRLYVVANENLWKCEPLTWFPDAIWVRIEQFLASFIGNFGVLYEASLILKRLCLEELVLGDVLKILEIIITIKKWIIPCHSRWQPITIFTYRG*