AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685920 MtrunA17_Chr4g0034521 98.663 374 5 0 27 400 1 374 0.0 758
Msa0685920 MtrunA17_Chr1g0162701 75.936 374 85 3 27 399 1 370 0.0 537
Msa0685920 MtrunA17_Chr5g0403571 57.407 378 154 4 27 397 1 378 9.93e-152 434
Msa0685920 MtrunA17_Chr8g0373611 57.560 377 154 4 27 399 1 375 1.51e-141 408
Msa0685920 MtrunA17_Chr3g0080561 56.164 73 31 1 310 381 1 73 1.14e-19 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685920 AT4G34320.2 74.599 374 88 2 27 399 1 368 0.0 530
Msa0685920 AT4G34320.1 74.599 374 88 2 27 399 1 368 0.0 530
Msa0685920 AT4G34330.1 58.537 369 132 3 27 395 1 348 9.21e-137 395
Msa0685920 AT2G18630.2 53.439 378 170 4 27 398 2 379 1.71e-133 388
Msa0685920 AT2G18630.1 53.439 378 170 4 27 398 2 379 1.95e-133 388
Msa0685920 AT5G66675.3 51.111 360 165 2 51 399 38 397 3.98e-122 360
Msa0685920 AT5G66675.4 51.111 360 165 2 51 399 38 397 3.98e-122 360
Msa0685920 AT5G66675.1 51.111 360 165 2 51 399 38 397 3.98e-122 360
Msa0685920 AT5G66675.2 51.111 360 165 2 51 399 38 397 3.98e-122 360
Msa0685920 AT5G66670.1 40.443 361 205 2 45 395 32 392 4.37e-88 273
Msa0685920 AT5G66670.3 40.443 361 205 2 45 395 32 392 4.37e-88 273
Msa0685920 AT5G66670.4 40.443 361 205 2 45 395 32 392 4.37e-88 273
Msa0685920 AT5G66670.2 40.443 361 205 2 45 395 32 392 4.37e-88 273
Msa0685920 AT5G66660.1 39.583 384 219 3 28 398 13 396 1.52e-84 263
Msa0685920 AT3G28270.2 31.768 362 220 8 55 394 16 372 6.38e-40 146
Msa0685920 AT3G28270.1 31.768 362 220 8 55 394 16 372 6.38e-40 146
Msa0685920 AT3G28290.1 29.412 374 234 10 49 394 9 380 6.99e-38 141
Msa0685920 AT3G28300.1 29.412 374 234 10 49 394 9 380 6.99e-38 141
Msa0685920 AT3G57100.1 26.019 319 206 8 92 394 43 347 4.95e-25 105
Msa0685920 AT3G28320.1 25.949 316 202 9 107 394 2 313 1.05e-20 92.4

Find 51 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACCAGCTCAAACAGTTCT+TGG 0.195333 4_4:+50218599 None:intergenic
ATGAAGAATGTTGAAGATTT+AGG 0.197144 4_4:-50217887 Msa0685920:CDS
ATGATTACTTTGGGTAATTT+AGG 0.235111 4_4:-50219976 Msa0685920:CDS
AAAGGACAGAAAGAAGTTAT+TGG 0.284045 4_4:-50218082 Msa0685920:CDS
GTTGATGACTTGATTTGTTC+TGG 0.284311 4_4:+50218753 None:intergenic
GCTGCTAATGCTGCAGCAAC+AGG 0.301920 4_4:+50218178 None:intergenic
TTATGTAGCTATCAAGGATT+TGG 0.315820 4_4:-50218041 Msa0685920:CDS
CTATCGGTTCGATGGGAAAA+TGG 0.316166 4_4:-50218141 Msa0685920:CDS
ACCATAATTCTTCAAATGTT+AGG 0.338785 4_4:+50217791 None:intergenic
AGAAGTTGTGAAAGTAATCT+TGG 0.348036 4_4:-50218647 Msa0685920:CDS
GTCATCAACACTCTTGCTTC+TGG 0.361072 4_4:-50218739 Msa0685920:CDS
ATAATTGTAGCCGTGACATT+AGG 0.416327 4_4:-50217853 Msa0685920:CDS
AGCTGAAAGGCATTCATTCA+TGG 0.436893 4_4:-50218285 Msa0685920:CDS
AGCTGTGAAGATTGCAATAG+AGG 0.437623 4_4:-50217936 Msa0685920:CDS
GAAAATGGATTGATTCACTT+TGG 0.441988 4_4:-50218126 Msa0685920:CDS
CAACTTCTTGATTCATCTCA+AGG 0.442247 4_4:+50218662 None:intergenic
TTCGAGGAAGAATCTGAATC+AGG 0.454083 4_4:-50218466 Msa0685920:CDS
ATTGGATTTCTGCACTGCAT+TGG 0.456782 4_4:-50218548 Msa0685920:CDS
CGATTTCAAGCCGATCGATA+AGG 0.459963 4_4:+50218005 None:intergenic
TGAAAACAGTTTGCAAACAT+TGG 0.470673 4_4:-50218566 Msa0685920:CDS
TCGCAACAAGAATAAGCAAT+TGG 0.470785 4_4:+50218497 None:intergenic
TGGATTGCAAGAAAGACATA+TGG 0.476491 4_4:-50218627 Msa0685920:CDS
ATCGATCCCTATCGGTTCGA+TGG 0.484266 4_4:-50218149 Msa0685920:CDS
TGGTACTTATGTAGCTATCA+AGG 0.491220 4_4:-50218047 Msa0685920:CDS
GCTAATGCTGCAGCAACAGG+TGG 0.499171 4_4:+50218181 None:intergenic
AAAAGTGTCTGAAAAGAGCT+AGG 0.500600 4_4:-50218525 Msa0685920:CDS
AATGGATTGATTCACTTTGG+AGG 0.504361 4_4:-50218123 Msa0685920:CDS
TGCACTACAAAACTGAACTA+AGG 0.513519 4_4:-50218837 Msa0685920:CDS
ATTGTAGCCGTGACATTAGG+AGG 0.521279 4_4:-50217850 Msa0685920:CDS
GAGGATATTAAGAAGAAACT+TGG 0.521607 4_4:-50217917 Msa0685920:CDS
TATCGATCGGCTTGAAATCG+AGG 0.523240 4_4:-50218002 Msa0685920:CDS
AAGCCAAGAACTGTTTGAGC+TGG 0.529444 4_4:-50218602 Msa0685920:CDS
AACTATGAAATTGCATTGAA+AGG 0.532957 4_4:-50218100 Msa0685920:CDS
TTATTCTTGTTGCGATTCAA+CGG 0.542031 4_4:-50218489 Msa0685920:CDS
GCCGTGACATTAGGAGGGCT+AGG 0.555093 4_4:-50217844 Msa0685920:CDS
TTTCAGCGATTCGAACGAAA+GGG 0.560920 4_4:+50218702 None:intergenic
TGTTGCGATTCAACGGTTCG+AGG 0.563490 4_4:-50218482 Msa0685920:CDS
GTTATTGGTTCAATGCAAGC+TGG 0.566371 4_4:-50218067 Msa0685920:CDS
GTTTCAGCGATTCGAACGAA+AGG 0.573968 4_4:+50218701 None:intergenic
TCGATCCCTATCGGTTCGAT+GGG 0.575670 4_4:-50218148 Msa0685920:CDS
TCCTAGCCCTCCTAATGTCA+CGG 0.589587 4_4:+50217843 None:intergenic
GCCGCTACATCGATCCCTAT+CGG 0.593918 4_4:-50218157 Msa0685920:CDS
AAGCTTGATAAGAAGCTGAA+AGG 0.596653 4_4:-50218298 Msa0685920:CDS
AAAGTGTCTGAAAAGAGCTA+GGG 0.609049 4_4:-50218524 Msa0685920:CDS
ATATCCGCGTCCTTATCGAT+CGG 0.631957 4_4:-50218015 Msa0685920:CDS
ACCGATAGGGATCGATGTAG+CGG 0.636329 4_4:+50218156 None:intergenic
CAAGCCGATCGATAAGGACG+CGG 0.642025 4_4:+50218011 None:intergenic
TTGTAGCCGTGACATTAGGA+GGG 0.664508 4_4:-50217849 Msa0685920:CDS
AGCAGCTTGCAAAATCGACA+CGG 0.669017 4_4:-50218806 Msa0685920:CDS
TGAAAGGCATTCATTCATGG+AGG 0.708034 4_4:-50218282 Msa0685920:CDS
AGCTGGTGATCCTTTCACTG+AGG 0.742418 4_4:-50218395 Msa0685920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTTTTTTGTTGAAA+AGG + chr4_4:50218250-50218269 None:intergenic 10.0%
!! AATGATGAAAATATATATAT+TGG + chr4_4:50218293-50218312 None:intergenic 10.0%
!!! TATATTTTTTTTTGTTGAAA+AGG + chr4_4:50218250-50218269 None:intergenic 10.0%
!! AATGATGAAAATATATATAT+TGG + chr4_4:50218293-50218312 None:intergenic 10.0%
!!! ACTTTTCTTAAATTTTTATG+TGG - chr4_4:50218364-50218383 Msa0685920:CDS 15.0%
!!! CTTTTCTTAAATTTTTATGT+GGG - chr4_4:50218365-50218384 Msa0685920:CDS 15.0%
!! TAATCCTAAAATTCATAAAT+TGG - chr4_4:50218757-50218776 Msa0685920:CDS 15.0%
!! TATAAACAGATTGAAAAATT+TGG + chr4_4:50219416-50219435 None:intergenic 15.0%
!!! ACTTTTCTTAAATTTTTATG+TGG - chr4_4:50218364-50218383 Msa0685920:CDS 15.0%
!!! CTTTTCTTAAATTTTTATGT+GGG - chr4_4:50218365-50218384 Msa0685920:CDS 15.0%
!! TAATCCTAAAATTCATAAAT+TGG - chr4_4:50218757-50218776 Msa0685920:CDS 15.0%
!! TATAAACAGATTGAAAAATT+TGG + chr4_4:50219416-50219435 None:intergenic 15.0%
!!! TTTGTTTTTTGTTGTTTACT+TGG - chr4_4:50218433-50218452 Msa0685920:CDS 20.0%
!! TGTATTTAAATAATACGATC+TGG + chr4_4:50218573-50218592 None:intergenic 20.0%
!!! TATCTTTATTTTTGTGAACT+GGG - chr4_4:50218683-50218702 Msa0685920:CDS 20.0%
!!! TGAACCAATTTATGAATTTT+AGG + chr4_4:50218764-50218783 None:intergenic 20.0%
!! GTTCATTATTCACTTTATAA+AGG - chr4_4:50218779-50218798 Msa0685920:CDS 20.0%
!!! TTGTTAGATCATTTTTTCAT+CGG - chr4_4:50218844-50218863 Msa0685920:CDS 20.0%
!!! TTTGTTTTTTGTTGTTTACT+TGG - chr4_4:50218433-50218452 Msa0685920:CDS 20.0%
!! TGTATTTAAATAATACGATC+TGG + chr4_4:50218573-50218592 None:intergenic 20.0%
!!! TATCTTTATTTTTGTGAACT+GGG - chr4_4:50218683-50218702 Msa0685920:CDS 20.0%
!!! TGAACCAATTTATGAATTTT+AGG + chr4_4:50218764-50218783 None:intergenic 20.0%
!! GTTCATTATTCACTTTATAA+AGG - chr4_4:50218779-50218798 Msa0685920:CDS 20.0%
!!! TTGTTAGATCATTTTTTCAT+CGG - chr4_4:50218844-50218863 Msa0685920:CDS 20.0%
! ATGATTACTTTGGGTAATTT+AGG - chr4_4:50217802-50217821 Msa0685920:CDS 25.0%
!! AAGTTTCTAAAGAGAATGAA+TGG + chr4_4:50217879-50217898 None:intergenic 25.0%
! AATATCGATACAAAAACCAA+AGG + chr4_4:50218527-50218546 None:intergenic 25.0%
!! TATCGATATTTTGTTGAGTA+TGG - chr4_4:50218537-50218556 Msa0685920:CDS 25.0%
!!! ATAAACCTTAAGTTGAATTG+AGG - chr4_4:50218604-50218623 Msa0685920:CDS 25.0%
!!! GTATCTTTATTTTTGTGAAC+TGG - chr4_4:50218682-50218701 Msa0685920:CDS 25.0%
!!! TTGAAGAATTTTAAAACAGC+TGG - chr4_4:50219366-50219385 Msa0685920:intron 25.0%
! AACTATGAAATTGCATTGAA+AGG - chr4_4:50219678-50219697 Msa0685920:intron 25.0%
! ATGAAGAATGTTGAAGATTT+AGG - chr4_4:50219891-50219910 Msa0685920:intron 25.0%
! ATGATTACTTTGGGTAATTT+AGG - chr4_4:50217802-50217821 Msa0685920:CDS 25.0%
!! AAGTTTCTAAAGAGAATGAA+TGG + chr4_4:50217879-50217898 None:intergenic 25.0%
! AATATCGATACAAAAACCAA+AGG + chr4_4:50218527-50218546 None:intergenic 25.0%
!! TATCGATATTTTGTTGAGTA+TGG - chr4_4:50218537-50218556 Msa0685920:CDS 25.0%
!!! ATAAACCTTAAGTTGAATTG+AGG - chr4_4:50218604-50218623 Msa0685920:CDS 25.0%
!!! GTATCTTTATTTTTGTGAAC+TGG - chr4_4:50218682-50218701 Msa0685920:CDS 25.0%
!!! TTGAAGAATTTTAAAACAGC+TGG - chr4_4:50219366-50219385 Msa0685920:intron 25.0%
! AACTATGAAATTGCATTGAA+AGG - chr4_4:50219678-50219697 Msa0685920:intron 25.0%
! ATGAAGAATGTTGAAGATTT+AGG - chr4_4:50219891-50219910 Msa0685920:intron 25.0%
!! AAGGTTGATGAAAGAATTTG+AGG + chr4_4:50218231-50218250 None:intergenic 30.0%
! TTTCAAACCTTTGAAAGAGA+TGG + chr4_4:50218344-50218363 None:intergenic 30.0%
TTATGCCTCAATTCAACTTA+AGG + chr4_4:50218612-50218631 None:intergenic 30.0%
AAGTTGAATTGAGGCATAAT+TGG - chr4_4:50218613-50218632 Msa0685920:CDS 30.0%
TCAGAGAAACAAACAATGTT+TGG + chr4_4:50218652-50218671 None:intergenic 30.0%
! CATTGTTTGTTTCTCTGATT+AGG - chr4_4:50218654-50218673 Msa0685920:CDS 30.0%
!!! TTTTTTCATCGGAGTTGAAA+TGG - chr4_4:50218855-50218874 Msa0685920:CDS 30.0%
! TTTTTCATCGGAGTTGAAAT+GGG - chr4_4:50218856-50218875 Msa0685920:CDS 30.0%
AGAAGTTGTGAAAGTAATCT+TGG - chr4_4:50219131-50219150 Msa0685920:intron 30.0%
TGAAAACAGTTTGCAAACAT+TGG - chr4_4:50219212-50219231 Msa0685920:intron 30.0%
TTATTCTTGTTGCGATTCAA+CGG - chr4_4:50219289-50219308 Msa0685920:intron 30.0%
!! GAAAATGGATTGATTCACTT+TGG - chr4_4:50219652-50219671 Msa0685920:intron 30.0%
AAAGGACAGAAAGAAGTTAT+TGG - chr4_4:50219696-50219715 Msa0685920:intron 30.0%
TTATGTAGCTATCAAGGATT+TGG - chr4_4:50219737-50219756 Msa0685920:intron 30.0%
GAGGATATTAAGAAGAAACT+TGG - chr4_4:50219861-50219880 Msa0685920:intron 30.0%
!! AAGGTTGATGAAAGAATTTG+AGG + chr4_4:50218231-50218250 None:intergenic 30.0%
! TTTCAAACCTTTGAAAGAGA+TGG + chr4_4:50218344-50218363 None:intergenic 30.0%
TTATGCCTCAATTCAACTTA+AGG + chr4_4:50218612-50218631 None:intergenic 30.0%
AAGTTGAATTGAGGCATAAT+TGG - chr4_4:50218613-50218632 Msa0685920:CDS 30.0%
TCAGAGAAACAAACAATGTT+TGG + chr4_4:50218652-50218671 None:intergenic 30.0%
! CATTGTTTGTTTCTCTGATT+AGG - chr4_4:50218654-50218673 Msa0685920:CDS 30.0%
!!! TTTTTTCATCGGAGTTGAAA+TGG - chr4_4:50218855-50218874 Msa0685920:CDS 30.0%
! TTTTTCATCGGAGTTGAAAT+GGG - chr4_4:50218856-50218875 Msa0685920:CDS 30.0%
AGAAGTTGTGAAAGTAATCT+TGG - chr4_4:50219131-50219150 Msa0685920:intron 30.0%
TGAAAACAGTTTGCAAACAT+TGG - chr4_4:50219212-50219231 Msa0685920:intron 30.0%
TTATTCTTGTTGCGATTCAA+CGG - chr4_4:50219289-50219308 Msa0685920:intron 30.0%
!! GAAAATGGATTGATTCACTT+TGG - chr4_4:50219652-50219671 Msa0685920:intron 30.0%
AAAGGACAGAAAGAAGTTAT+TGG - chr4_4:50219696-50219715 Msa0685920:intron 30.0%
TTATGTAGCTATCAAGGATT+TGG - chr4_4:50219737-50219756 Msa0685920:intron 30.0%
GAGGATATTAAGAAGAAACT+TGG - chr4_4:50219861-50219880 Msa0685920:intron 30.0%
ATGACACAACACAAGTCATA+GGG + chr4_4:50217933-50217952 None:intergenic 35.0%
AATGACACAACACAAGTCAT+AGG + chr4_4:50217934-50217953 None:intergenic 35.0%
TTGCTTCTAACTCATTCTCT+TGG - chr4_4:50217994-50218013 Msa0685920:CDS 35.0%
TAAAACTGTCAGTGTAAACG+AGG - chr4_4:50218040-50218059 Msa0685920:CDS 35.0%
TTTCATCATTGTCGTTGTCT+TGG - chr4_4:50218303-50218322 Msa0685920:CDS 35.0%
GAAAGAGATGGAAGTAGATT+AGG + chr4_4:50218332-50218351 None:intergenic 35.0%
TCTACTTCCATCTCTTTCAA+AGG - chr4_4:50218334-50218353 Msa0685920:CDS 35.0%
TAGTATAACACAGCATCCTT+TGG - chr4_4:50218508-50218527 Msa0685920:CDS 35.0%
! TTTTCATCGGAGTTGAAATG+GGG - chr4_4:50218857-50218876 Msa0685920:CDS 35.0%
TGCACTACAAAACTGAACTA+AGG - chr4_4:50218941-50218960 Msa0685920:intron 35.0%
!! GTTGATGACTTGATTTGTTC+TGG + chr4_4:50219028-50219047 None:intergenic 35.0%
CAACTTCTTGATTCATCTCA+AGG + chr4_4:50219119-50219138 None:intergenic 35.0%
TGGATTGCAAGAAAGACATA+TGG - chr4_4:50219151-50219170 Msa0685920:intron 35.0%
!! AAAAGTGTCTGAAAAGAGCT+AGG - chr4_4:50219253-50219272 Msa0685920:intron 35.0%
! AAAGTGTCTGAAAAGAGCTA+GGG - chr4_4:50219254-50219273 Msa0685920:intron 35.0%
TCGCAACAAGAATAAGCAAT+TGG + chr4_4:50219284-50219303 None:intergenic 35.0%
AAGCTTGATAAGAAGCTGAA+AGG - chr4_4:50219480-50219499 Msa0685920:intron 35.0%
!!! TGTTTTGATCTGTTCTGTTG+TGG - chr4_4:50219557-50219576 Msa0685920:intron 35.0%
!! AATGGATTGATTCACTTTGG+AGG - chr4_4:50219655-50219674 Msa0685920:intron 35.0%
TGGTACTTATGTAGCTATCA+AGG - chr4_4:50219731-50219750 Msa0685920:intron 35.0%
ATAATTGTAGCCGTGACATT+AGG - chr4_4:50219925-50219944 Msa0685920:intron 35.0%
ATGACACAACACAAGTCATA+GGG + chr4_4:50217933-50217952 None:intergenic 35.0%
AATGACACAACACAAGTCAT+AGG + chr4_4:50217934-50217953 None:intergenic 35.0%
TTGCTTCTAACTCATTCTCT+TGG - chr4_4:50217994-50218013 Msa0685920:CDS 35.0%
TAAAACTGTCAGTGTAAACG+AGG - chr4_4:50218040-50218059 Msa0685920:CDS 35.0%
TTTCATCATTGTCGTTGTCT+TGG - chr4_4:50218303-50218322 Msa0685920:CDS 35.0%
GAAAGAGATGGAAGTAGATT+AGG + chr4_4:50218332-50218351 None:intergenic 35.0%
TCTACTTCCATCTCTTTCAA+AGG - chr4_4:50218334-50218353 Msa0685920:CDS 35.0%
TAGTATAACACAGCATCCTT+TGG - chr4_4:50218508-50218527 Msa0685920:CDS 35.0%
! TTTTCATCGGAGTTGAAATG+GGG - chr4_4:50218857-50218876 Msa0685920:CDS 35.0%
TGCACTACAAAACTGAACTA+AGG - chr4_4:50218941-50218960 Msa0685920:intron 35.0%
!! GTTGATGACTTGATTTGTTC+TGG + chr4_4:50219028-50219047 None:intergenic 35.0%
CAACTTCTTGATTCATCTCA+AGG + chr4_4:50219119-50219138 None:intergenic 35.0%
TGGATTGCAAGAAAGACATA+TGG - chr4_4:50219151-50219170 Msa0685920:intron 35.0%
!! AAAAGTGTCTGAAAAGAGCT+AGG - chr4_4:50219253-50219272 Msa0685920:intron 35.0%
! AAAGTGTCTGAAAAGAGCTA+GGG - chr4_4:50219254-50219273 Msa0685920:intron 35.0%
TCGCAACAAGAATAAGCAAT+TGG + chr4_4:50219284-50219303 None:intergenic 35.0%
AAGCTTGATAAGAAGCTGAA+AGG - chr4_4:50219480-50219499 Msa0685920:intron 35.0%
!!! TGTTTTGATCTGTTCTGTTG+TGG - chr4_4:50219557-50219576 Msa0685920:intron 35.0%
!! AATGGATTGATTCACTTTGG+AGG - chr4_4:50219655-50219674 Msa0685920:intron 35.0%
TGGTACTTATGTAGCTATCA+AGG - chr4_4:50219731-50219750 Msa0685920:intron 35.0%
ATAATTGTAGCCGTGACATT+AGG - chr4_4:50219925-50219944 Msa0685920:intron 35.0%
AACACAATGAGCACAAGCTT+CGG + chr4_4:50217976-50217995 None:intergenic 40.0%
! GATTTTGCAAGCTGCTTCAT+AGG + chr4_4:50218968-50218987 None:intergenic 40.0%
TTTCAGCGATTCGAACGAAA+GGG + chr4_4:50219079-50219098 None:intergenic 40.0%
ATTGGATTTCTGCACTGCAT+TGG - chr4_4:50219230-50219249 Msa0685920:intron 40.0%
TTCGAGGAAGAATCTGAATC+AGG - chr4_4:50219312-50219331 Msa0685920:intron 40.0%
TGGAAAAACTCCTCAGTGAA+AGG + chr4_4:50219396-50219415 None:intergenic 40.0%
!! AGCTGAAAGGCATTCATTCA+TGG - chr4_4:50219493-50219512 Msa0685920:intron 40.0%
!! TGAAAGGCATTCATTCATGG+AGG - chr4_4:50219496-50219515 Msa0685920:intron 40.0%
! ATTTTCCCATCGAACCGATA+GGG + chr4_4:50219638-50219657 None:intergenic 40.0%
!! GTTATTGGTTCAATGCAAGC+TGG - chr4_4:50219711-50219730 Msa0685920:intron 40.0%
AGCTGTGAAGATTGCAATAG+AGG - chr4_4:50219842-50219861 Msa0685920:intron 40.0%
AACACAATGAGCACAAGCTT+CGG + chr4_4:50217976-50217995 None:intergenic 40.0%
! GATTTTGCAAGCTGCTTCAT+AGG + chr4_4:50218968-50218987 None:intergenic 40.0%
TTTCAGCGATTCGAACGAAA+GGG + chr4_4:50219079-50219098 None:intergenic 40.0%
ATTGGATTTCTGCACTGCAT+TGG - chr4_4:50219230-50219249 Msa0685920:intron 40.0%
TTCGAGGAAGAATCTGAATC+AGG - chr4_4:50219312-50219331 Msa0685920:intron 40.0%
TGGAAAAACTCCTCAGTGAA+AGG + chr4_4:50219396-50219415 None:intergenic 40.0%
!! AGCTGAAAGGCATTCATTCA+TGG - chr4_4:50219493-50219512 Msa0685920:intron 40.0%
!! TGAAAGGCATTCATTCATGG+AGG - chr4_4:50219496-50219515 Msa0685920:intron 40.0%
! ATTTTCCCATCGAACCGATA+GGG + chr4_4:50219638-50219657 None:intergenic 40.0%
!! GTTATTGGTTCAATGCAAGC+TGG - chr4_4:50219711-50219730 Msa0685920:intron 40.0%
AGCTGTGAAGATTGCAATAG+AGG - chr4_4:50219842-50219861 Msa0685920:intron 40.0%
ACACAATGAGCACAAGCTTC+GGG + chr4_4:50217975-50217994 None:intergenic 45.0%
AGCAGCTTGCAAAATCGACA+CGG - chr4_4:50218972-50218991 Msa0685920:intron 45.0%
GTCATCAACACTCTTGCTTC+TGG - chr4_4:50219039-50219058 Msa0685920:intron 45.0%
GTTTCAGCGATTCGAACGAA+AGG + chr4_4:50219080-50219099 None:intergenic 45.0%
AAGCCAAGAACTGTTTGAGC+TGG - chr4_4:50219176-50219195 Msa0685920:intron 45.0%
CAACCAGCTCAAACAGTTCT+TGG + chr4_4:50219182-50219201 None:intergenic 45.0%
! CATTTTCCCATCGAACCGAT+AGG + chr4_4:50219639-50219658 None:intergenic 45.0%
!! CTATCGGTTCGATGGGAAAA+TGG - chr4_4:50219637-50219656 Msa0685920:intron 45.0%
ATATCCGCGTCCTTATCGAT+CGG - chr4_4:50219763-50219782 Msa0685920:intron 45.0%
CGATTTCAAGCCGATCGATA+AGG + chr4_4:50219776-50219795 None:intergenic 45.0%
!! TATCGATCGGCTTGAAATCG+AGG - chr4_4:50219776-50219795 Msa0685920:intron 45.0%
ATTGTAGCCGTGACATTAGG+AGG - chr4_4:50219928-50219947 Msa0685920:intron 45.0%
TTGTAGCCGTGACATTAGGA+GGG - chr4_4:50219929-50219948 Msa0685920:intron 45.0%
ACACAATGAGCACAAGCTTC+GGG + chr4_4:50217975-50217994 None:intergenic 45.0%
AGCAGCTTGCAAAATCGACA+CGG - chr4_4:50218972-50218991 Msa0685920:intron 45.0%
GTCATCAACACTCTTGCTTC+TGG - chr4_4:50219039-50219058 Msa0685920:intron 45.0%
GTTTCAGCGATTCGAACGAA+AGG + chr4_4:50219080-50219099 None:intergenic 45.0%
AAGCCAAGAACTGTTTGAGC+TGG - chr4_4:50219176-50219195 Msa0685920:intron 45.0%
CAACCAGCTCAAACAGTTCT+TGG + chr4_4:50219182-50219201 None:intergenic 45.0%
! CATTTTCCCATCGAACCGAT+AGG + chr4_4:50219639-50219658 None:intergenic 45.0%
!! CTATCGGTTCGATGGGAAAA+TGG - chr4_4:50219637-50219656 Msa0685920:intron 45.0%
ATATCCGCGTCCTTATCGAT+CGG - chr4_4:50219763-50219782 Msa0685920:intron 45.0%
CGATTTCAAGCCGATCGATA+AGG + chr4_4:50219776-50219795 None:intergenic 45.0%
!! TATCGATCGGCTTGAAATCG+AGG - chr4_4:50219776-50219795 Msa0685920:intron 45.0%
ATTGTAGCCGTGACATTAGG+AGG - chr4_4:50219928-50219947 Msa0685920:intron 45.0%
TTGTAGCCGTGACATTAGGA+GGG - chr4_4:50219929-50219948 Msa0685920:intron 45.0%
TGTTGCGATTCAACGGTTCG+AGG - chr4_4:50219296-50219315 Msa0685920:intron 50.0%
AGCTGGTGATCCTTTCACTG+AGG - chr4_4:50219383-50219402 Msa0685920:intron 50.0%
ACCGATAGGGATCGATGTAG+CGG + chr4_4:50219625-50219644 None:intergenic 50.0%
!! ATCGATCCCTATCGGTTCGA+TGG - chr4_4:50219629-50219648 Msa0685920:intron 50.0%
!! TCGATCCCTATCGGTTCGAT+GGG - chr4_4:50219630-50219649 Msa0685920:intron 50.0%
TCCTAGCCCTCCTAATGTCA+CGG + chr4_4:50219938-50219957 None:intergenic 50.0%
TGTTGCGATTCAACGGTTCG+AGG - chr4_4:50219296-50219315 Msa0685920:intron 50.0%
AGCTGGTGATCCTTTCACTG+AGG - chr4_4:50219383-50219402 Msa0685920:intron 50.0%
ACCGATAGGGATCGATGTAG+CGG + chr4_4:50219625-50219644 None:intergenic 50.0%
!! ATCGATCCCTATCGGTTCGA+TGG - chr4_4:50219629-50219648 Msa0685920:intron 50.0%
!! TCGATCCCTATCGGTTCGAT+GGG - chr4_4:50219630-50219649 Msa0685920:intron 50.0%
TCCTAGCCCTCCTAATGTCA+CGG + chr4_4:50219938-50219957 None:intergenic 50.0%
GCTAATGCTGCAGCAACAGG+TGG + chr4_4:50219600-50219619 None:intergenic 55.0%
GCTGCTAATGCTGCAGCAAC+AGG + chr4_4:50219603-50219622 None:intergenic 55.0%
GCCGCTACATCGATCCCTAT+CGG - chr4_4:50219621-50219640 Msa0685920:intron 55.0%
CAAGCCGATCGATAAGGACG+CGG + chr4_4:50219770-50219789 None:intergenic 55.0%
GCTAATGCTGCAGCAACAGG+TGG + chr4_4:50219600-50219619 None:intergenic 55.0%
GCTGCTAATGCTGCAGCAAC+AGG + chr4_4:50219603-50219622 None:intergenic 55.0%
GCCGCTACATCGATCCCTAT+CGG - chr4_4:50219621-50219640 Msa0685920:intron 55.0%
CAAGCCGATCGATAAGGACG+CGG + chr4_4:50219770-50219789 None:intergenic 55.0%
GCCGTGACATTAGGAGGGCT+AGG - chr4_4:50219934-50219953 Msa0685920:intron 60.0%
GCCGTGACATTAGGAGGGCT+AGG - chr4_4:50219934-50219953 Msa0685920:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 50217802 50219998 50217802 ID=Msa0685920;Name=Msa0685920
chr4_4 mRNA 50217802 50219998 50217802 ID=Msa0685920-mRNA-1;Parent=Msa0685920;Name=Msa0685920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.5|1|1|2|0|400
chr4_4 exon 50219944 50219998 50219944 ID=Msa0685920-mRNA-1:exon:12807;Parent=Msa0685920-mRNA-1
chr4_4 exon 50217802 50218949 50217802 ID=Msa0685920-mRNA-1:exon:12806;Parent=Msa0685920-mRNA-1
chr4_4 CDS 50219944 50219998 50219944 ID=Msa0685920-mRNA-1:cds;Parent=Msa0685920-mRNA-1
chr4_4 CDS 50217802 50218949 50217802 ID=Msa0685920-mRNA-1:cds;Parent=Msa0685920-mRNA-1
Gene Sequence

>Msa0685920

ATGATTACTTTGGGTAATTTAGGCTCACATATTACAGCTGTTGCTAGCAAAACACATCATTTTTTCATCGGAGTTGAAATGGGGAGTAATATGAGCAAAAAGACACAAGAAACTTCATCTGCAGTTAACTTGACAACTACTGAATTGCACTACAAAACTGAACTAAGGTCCTATGAAGCAGCTTGCAAAATCGACACGGATTTGCAGACATTTGATTCAACACTTCAAACCAGAACAAATCAAGTCATCAACACTCTTGCTTCTGGCGTCGAAGTTCGAGCCCTTTCGTTCGAATCGCTGAAACAGATCACAGAATGTCTCCTTGAGATGAATCAAGAAGTTGTGAAAGTAATCTTGGATTGCAAGAAAGACATATGGAAAAGCCAAGAACTGTTTGAGCTGGTTGAAGAATATTTTGAAAACAGTTTGCAAACATTGGATTTCTGCACTGCATTGGAAAAGTGTCTGAAAAGAGCTAGGGATAGCCAATTGCTTATTCTTGTTGCGATTCAACGGTTCGAGGAAGAATCTGAATCAGGAGACAAATGCTATGCAAGAACATTGCAAGAATTGAAGAATTTTAAAACAGCTGGTGATCCTTTCACTGAGGAGTTTTTCCAAATTTTTCAATCTGTTTATAAGCAACAGACTTCAATGCTTGAAAAGCTTCAAATCAGAAAGAACAAGCTTGATAAGAAGCTGAAAGGCATTCATTCATGGAGGAAAGTTTCAAGCATGATATTTGTAGCTACATTTGCAGCTGTTTTGATCTGTTCTGTTGTGGCAGCAGCTATTGCAGCTCCACCTGTTGCTGCAGCATTAGCAGCCGCTACATCGATCCCTATCGGTTCGATGGGAAAATGGATTGATTCACTTTGGAGGAACTATGAAATTGCATTGAAAGGACAGAAAGAAGTTATTGGTTCAATGCAAGCTGGTACTTATGTAGCTATCAAGGATTTGGACAATATCCGCGTCCTTATCGATCGGCTTGAAATCGAGGTTGAATCTTTGCTGCATACTGTTGATTTTGCAATTGAAGAAGAAGCTGTGAAGATTGCAATAGAGGATATTAAGAAGAAACTTGGTGTGTTTATGAAGAATGTTGAAGATTTAGGAGTTCAAGCTGATAATTGTAGCCGTGACATTAGGAGGGCTAGGACTGTTGTTCTGCAAAGAATCATAAAGCATCCTAACATTTGA

Protein sequence

>Msa0685920

MITLGNLGSHITAVASKTHHFFIGVEMGSNMSKKTQETSSAVNLTTTELHYKTELRSYEAACKIDTDLQTFDSTLQTRTNQVINTLASGVEVRALSFESLKQITECLLEMNQEVVKVILDCKKDIWKSQELFELVEEYFENSLQTLDFCTALEKCLKRARDSQLLILVAIQRFEEESESGDKCYARTLQELKNFKTAGDPFTEEFFQIFQSVYKQQTSMLEKLQIRKNKLDKKLKGIHSWRKVSSMIFVATFAAVLICSVVAAAIAAPPVAAALAAATSIPIGSMGKWIDSLWRNYEIALKGQKEVIGSMQAGTYVAIKDLDNIRVLIDRLEIEVESLLHTVDFAIEEEAVKIAIEDIKKKLGVFMKNVEDLGVQADNCSRDIRRARTVVLQRIIKHPNI*