AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0363680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363680 MtrunA17_Chr3g0102441 97.484 477 4 1 1 477 1 469 0.0 958
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0363680 AT5G55760.1 67.017 476 143 4 1 474 1 464 0.0 670

Find 125 sgRNAs with CRISPR-Local

Find 568 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAACTTTGTAAGCTATTC+TGG 0.175854 3_1:-56309665 Msa0363680:five_prime_UTR
TTGCCTTGTCTTTCAGCTTT+TGG 0.183497 3_1:+56301536 None:intergenic
GGTAGAAACTATTGGTTTAA+AGG 0.219781 3_1:-56306223 Msa0363680:CDS
GAAGCGTTCAAAAGCTTCTA+AGG 0.253424 3_1:-56301326 Msa0363680:CDS
AGGTTTCAAACCAGCCATTC+TGG 0.273794 3_1:-56302197 Msa0363680:CDS
ATTTATCTACACCTTTGATA+TGG 0.278022 3_1:+56301297 None:intergenic
GATACACTAGTTACTGAATA+TGG 0.279181 3_1:-56301127 Msa0363680:three_prime_UTR
AGCAACCATTTCGGCTTAAA+AGG 0.282979 3_1:-56302171 Msa0363680:intron
ATGGTTCTAAACCTCAATTT+TGG 0.301570 3_1:-56301925 Msa0363680:CDS
GCACTCAGTCTTCCCTAAAA+TGG 0.305197 3_1:-56301175 Msa0363680:three_prime_UTR
ACTAGCTATCATGATTAAAA+AGG 0.305932 3_1:-56307605 Msa0363680:intron
TCAGCAGGATTCATCTCCTT+TGG 0.308548 3_1:+56305566 None:intergenic
TTCGAGGTCCCAAGGGGATT+TGG 0.313823 3_1:-56307412 Msa0363680:CDS
CAAGGGGATTTGGACGCTTC+AGG 0.315058 3_1:-56307402 Msa0363680:intron
TTCTCGTGATAGAATGTTGA+TGG 0.318576 3_1:-56306712 Msa0363680:intron
TTCTTTCGATAACAGCATTC+TGG 0.319750 3_1:+56301494 None:intergenic
TCACCATTGGTTAGAGAATC+AGG 0.321158 3_1:+56301394 None:intergenic
TAAGCATCTAGTAGTGTTTA+CGG 0.356197 3_1:-56307471 Msa0363680:CDS
TAGAACCATTTCAAATGCTT+TGG 0.361886 3_1:+56301939 None:intergenic
ACTGCATGGGAATTCTTTCA+TGG 0.370190 3_1:-56306647 Msa0363680:CDS
TGGCTGGTTTGAAACCTTCC+TGG 0.371374 3_1:+56302203 None:intergenic
TGTCTCACCGTAAAATCAAT+TGG 0.384741 3_1:+56301865 None:intergenic
CCCTTGGGACCTCGAAAATC+AGG 0.386023 3_1:+56307419 None:intergenic
GAGCATGCACTACAATAATC+TGG 0.394709 3_1:+56303886 None:intergenic
CTGAATATGGTGTGTAATCT+TGG 0.396442 3_1:-56301114 Msa0363680:three_prime_UTR
GGTTGGTTGGTGAATGAGTT+TGG 0.399314 3_1:+56309640 None:intergenic
TGCAGATTCCTCCTTTCATC+AGG 0.399672 3_1:-56303920 Msa0363680:CDS
TTCTGGATAAGCAACCATTT+CGG 0.403937 3_1:-56302180 Msa0363680:CDS
ATTCAGATCAAATACCTTAT+CGG 0.407046 3_1:+56304645 None:intergenic
ACTCTACAAAATTTATTGAA+TGG 0.408038 3_1:+56300990 None:intergenic
TGTTTGCAGTGCTTCTCAGC+AGG 0.427898 3_1:+56305551 None:intergenic
CTTGGCACCGCACGGTGAAA+TGG 0.435372 3_1:+56307004 None:intergenic
TAGGTAGTAATCTCGCTTCT+AGG 0.438765 3_1:+56301457 None:intergenic
CACCAACCAACCATGTCTCT+TGG 0.439468 3_1:-56309629 Msa0363680:exon
TCAAAGGAAATGAGAGAAGA+AGG 0.440135 3_1:+56309710 None:intergenic
TGAAATGGTAATGATGCTTC+AGG 0.442158 3_1:+56307019 None:intergenic
CGCAGCCATCGCCAAAATTG+AGG 0.447150 3_1:+56301914 None:intergenic
TAATCTCGCTTCTAGGTGTC+AGG 0.456233 3_1:+56301464 None:intergenic
CTAGTAGTGTTTACGGGTGC+AGG 0.462359 3_1:-56307464 Msa0363680:CDS
AAGCTTGACTCACATGGCTC+TGG 0.465938 3_1:-56306984 Msa0363680:CDS
GATGGTCTCCATCTTCGATC+TGG 0.473881 3_1:-56306694 Msa0363680:CDS
AAAATGTGGAACAAGACTTA+AGG 0.474278 3_1:-56306175 Msa0363680:CDS
TGCTGAGAAGCACTGCAAAC+AGG 0.474408 3_1:-56305549 Msa0363680:CDS
ACCAACCAACCATGTCTCTT+GGG 0.475457 3_1:-56309628 Msa0363680:exon
ATATACCAAAGCATTTGAAA+TGG 0.481529 3_1:-56301944 Msa0363680:CDS
GCAGGTTTCCTTCTTGGACC+AGG 0.481822 3_1:-56302221 Msa0363680:intron
AGTTGTCATTGTAAATCTCC+AGG 0.483911 3_1:-56305035 Msa0363680:intron
ATGGAAACTTGCCCTTCTTG+TGG 0.485023 3_1:-56306628 Msa0363680:CDS
GCAGGATTCATCTCCTTTGG+AGG 0.486166 3_1:+56305569 None:intergenic
ACAGGTAATTTCAGGTGTCA+TGG 0.486838 3_1:-56303955 Msa0363680:intron
AGTTCAGAAAGTTTCTCCCT+TGG 0.488171 3_1:+56306667 None:intergenic
TTAAGGATACAGTTCTTGAC+TGG 0.488201 3_1:-56306158 Msa0363680:CDS
GGCAGATATAGTGTTATGCT+TGG 0.489447 3_1:-56305528 Msa0363680:CDS
GTCTCACCGTAAAATCAATT+GGG 0.489745 3_1:+56301866 None:intergenic
GCACTACAATAATCTGGAAA+AGG 0.493245 3_1:+56303892 None:intergenic
GGGCATGAGTACTTGCAACT+TGG 0.493272 3_1:+56303364 None:intergenic
AAGGAGGAATCTGCATGTTA+AGG 0.493664 3_1:+56303928 None:intergenic
GGCTCTGGTTGAATTAGAAA+AGG 0.494266 3_1:-56306969 Msa0363680:CDS
CCGCCGCGAAGTGCTTTAAG+AGG 0.496230 3_1:+56305064 None:intergenic
CAATTGGGACATCAACTTCA+AGG 0.501142 3_1:+56301881 None:intergenic
AATGCATCTTTAGTGATACA+TGG 0.501453 3_1:-56304673 Msa0363680:CDS
GGTTGCTTATCCAGAATGGC+TGG 0.502862 3_1:+56302187 None:intergenic
AAGCATCTAGTAGTGTTTAC+GGG 0.504531 3_1:-56307470 Msa0363680:CDS
TTAAGAGGCAAGTTGCATGC+TGG 0.507879 3_1:+56305079 None:intergenic
TAGTGTTATGCTTGGGAACA+AGG 0.510252 3_1:-56305520 Msa0363680:intron
CTTAAAGCACTTCGCGGCGG+AGG 0.514219 3_1:-56305061 Msa0363680:CDS
AAGAGAAAAGATAGCTTGAC+TGG 0.515176 3_1:-56301364 Msa0363680:CDS
TTGGTATTCCAGATCGAAGA+TGG 0.515541 3_1:+56306686 None:intergenic
GAAACCTTCCTGGTCCAAGA+AGG 0.523720 3_1:+56302213 None:intergenic
GTTGCCAACATCTTCTATGT+AGG 0.525670 3_1:+56309589 None:intergenic
CTGAAGCGTCCAAATCCCCT+TGG 0.528209 3_1:+56307403 None:intergenic
TTTCAAGCAAAACGTGAGAT+GGG 0.530323 3_1:+56309543 None:intergenic
TTTGAAGTTTGTTATCAGCC+AGG 0.533474 3_1:-56306939 Msa0363680:intron
GCAGATATAGTGTTATGCTT+GGG 0.536601 3_1:-56305527 Msa0363680:CDS
ATAGAAGATGTTGGCAACGT+TGG 0.537656 3_1:-56309584 Msa0363680:CDS
CTGGTTGAATTAGAAAAGGC+TGG 0.539335 3_1:-56306965 Msa0363680:CDS
CGCTGTTCGAATGCAAAATG+TGG 0.543044 3_1:-56306189 Msa0363680:CDS
GTTTCCTTCTTGGACCAGGA+AGG 0.545728 3_1:-56302217 Msa0363680:CDS
CGTACTCAGTTCCACAAGAA+GGG 0.553930 3_1:+56306617 None:intergenic
TCGTACTCAGTTCCACAAGA+AGG 0.554496 3_1:+56306616 None:intergenic
TGAAGCGTCCAAATCCCCTT+GGG 0.555198 3_1:+56307404 None:intergenic
AGAATGCTGTTATCGAAAGA+AGG 0.557097 3_1:-56301492 Msa0363680:CDS
CTTTCCTACATAGAAGATGT+TGG 0.557770 3_1:-56309593 Msa0363680:CDS
AGAGCCATGTGAGTCAAGCT+TGG 0.558595 3_1:+56306986 None:intergenic
GAGAAACTTTCTGAACTGCA+TGG 0.561276 3_1:-56306661 Msa0363680:CDS
TACAAAGAATTAGAACTGAC+AGG 0.563907 3_1:-56301239 Msa0363680:three_prime_UTR
ATGCATCTTTAGTGATACAT+GGG 0.567208 3_1:-56304672 Msa0363680:CDS
TAAGGGTAAATCCATATCAA+AGG 0.568748 3_1:-56301308 Msa0363680:CDS
CTCAGCATACCCAAGAGACA+TGG 0.569078 3_1:+56309619 None:intergenic
AGAAACTTTCTGAACTGCAT+GGG 0.573757 3_1:-56306660 Msa0363680:CDS
AAATGGTTGCTTATCCAGAA+TGG 0.574178 3_1:+56302183 None:intergenic
TTGCCTCTTAAAGCACTTCG+CGG 0.576788 3_1:-56305067 Msa0363680:CDS
GTCCCTGATTCTCTAACCAA+TGG 0.580796 3_1:-56301397 Msa0363680:CDS
GGTGCCAAGCTTGACTCACA+TGG 0.585172 3_1:-56306990 Msa0363680:CDS
ACCCAAGAGACATGGTTGGT+TGG 0.590647 3_1:+56309627 None:intergenic
CTCGCTTCTAGGTGTCAGGA+TGG 0.594883 3_1:+56301468 None:intergenic
GCCTTTCATCAAGTCTGTCG+AGG 0.598804 3_1:-56303328 Msa0363680:intron
AATTGGGACATCAACTTCAA+GGG 0.601492 3_1:+56301882 None:intergenic
AAAAGGTCAATCCTGATGAA+AGG 0.602186 3_1:+56303909 None:intergenic
AAGCGTTCAAAAGCTTCTAA+GGG 0.602950 3_1:-56301325 Msa0363680:CDS
CACCATTGGTTAGAGAATCA+GGG 0.604828 3_1:+56301395 None:intergenic
ACCTCGACAGACTTGATGAA+AGG 0.605065 3_1:+56303327 None:intergenic
GTATTATTATTACAGCGTGA+AGG 0.611963 3_1:-56307052 Msa0363680:intron
TGACTGGTACAAGTTCGTCT+AGG 0.615225 3_1:-56301348 Msa0363680:CDS
TAAGGATACAGTTCTTGACT+GGG 0.617521 3_1:-56306157 Msa0363680:CDS
TCTTCGATCTGGAATACCAA+GGG 0.618478 3_1:-56306683 Msa0363680:CDS
GCAGGAATATCAACTTCTTG+TGG 0.619190 3_1:-56307446 Msa0363680:CDS
GCAATTGTTCAATCAAAATG+TGG 0.625066 3_1:-56301517 Msa0363680:CDS
TGGTAATGATGCTTCAGGCA+AGG 0.625308 3_1:+56307024 None:intergenic
GAGTCAAGCTTGGCACCGCA+CGG 0.627315 3_1:+56306996 None:intergenic
ATTCCAAAAGCTGAAAGACA+AGG 0.629764 3_1:-56301539 Msa0363680:CDS
ATCTTCGATCTGGAATACCA+AGG 0.633384 3_1:-56306684 Msa0363680:CDS
AGGTCAATCCTGATGAAAGG+AGG 0.638554 3_1:+56303912 None:intergenic
TGATGGCTTCAACTTTGACA+AGG 0.639258 3_1:-56301569 Msa0363680:CDS
ACAGGACGCACTGCCTCCAA+AGG 0.640969 3_1:-56305582 Msa0363680:intron
AACATTGGTCACAACTGCAT+AGG 0.641129 3_1:+56301438 None:intergenic
GCATACCCAAGAGACATGGT+TGG 0.641305 3_1:+56309623 None:intergenic
AACTCTTCAGAAAACCCCAA+AGG 0.645308 3_1:-56304701 Msa0363680:intron
TATGGTGTGTAATCTTGGTG+TGG 0.647545 3_1:-56301109 Msa0363680:three_prime_UTR
GTAGTGCATGCTCTGAGCAA+TGG 0.650209 3_1:-56303876 Msa0363680:intron
TTTGCTGTAATGAACAACAT+TGG 0.650477 3_1:+56301423 None:intergenic
TTGGTTTAAAGGAGACATCA+CGG 0.662902 3_1:-56306212 Msa0363680:CDS
ATCATTACCATTTCACCGTG+CGG 0.672055 3_1:-56307011 Msa0363680:CDS
CCTCTTAAAGCACTTCGCGG+CGG 0.673751 3_1:-56305064 Msa0363680:CDS
GGATACAGTTCTTGACTGGG+AGG 0.685315 3_1:-56306154 Msa0363680:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATCAAAAATTATAATTT+CGG - chr3_1:56302151-56302170 Msa0363680:intron 10.0%
!!! TAAGATATATATTTTTTTCT+TGG - chr3_1:56303098-56303117 Msa0363680:intron 10.0%
!! ATTATTATTTATTATTACTG+GGG + chr3_1:56304867-56304886 None:intergenic 10.0%
!! TTTAATTGTTTATTAATAAC+TGG - chr3_1:56305370-56305389 Msa0363680:intron 10.0%
!! AATAATCAAATAAATAACTA+TGG + chr3_1:56306145-56306164 None:intergenic 10.0%
!!! TTTTGTATTATCATATTTAA+AGG + chr3_1:56306405-56306424 None:intergenic 10.0%
!!! ATAATACAAAATTTATTTTC+TGG - chr3_1:56306414-56306433 Msa0363680:intron 10.0%
!!! TATTTATTTAGTTTATTAGA+AGG - chr3_1:56306520-56306539 Msa0363680:intron 10.0%
!!! TTTGAAAATTTATTATTTTC+GGG - chr3_1:56307730-56307749 Msa0363680:intron 10.0%
!! TTTAATAACATATTGAAAAT+AGG - chr3_1:56307938-56307957 Msa0363680:intron 10.0%
!! TATAATCTTAAAAGAAAATA+AGG - chr3_1:56309000-56309019 Msa0363680:intron 10.0%
!!! AAAATTATAATTTCGGTTTT+CGG - chr3_1:56302158-56302177 Msa0363680:intron 15.0%
!! AATACATGTAAATTGAAAAT+TGG + chr3_1:56302524-56302543 None:intergenic 15.0%
!! ATGATATGTATGAATTATAA+AGG - chr3_1:56303037-56303056 Msa0363680:intron 15.0%
!! TGATATGTATGAATTATAAA+GGG - chr3_1:56303038-56303057 Msa0363680:intron 15.0%
!! TACTTATTGATGTTTATATT+GGG - chr3_1:56303168-56303187 Msa0363680:intron 15.0%
!! AAAAAAAAAAAAACAGAGAA+AGG + chr3_1:56303196-56303215 None:intergenic 15.0%
!!! TACTACAATTAAACATTTTT+TGG - chr3_1:56303386-56303405 Msa0363680:CDS 15.0%
!! AGAAATTTAAATACTGAATT+CGG + chr3_1:56303980-56303999 None:intergenic 15.0%
!! TGTAAATATTCATAACTAAA+TGG + chr3_1:56304232-56304251 None:intergenic 15.0%
!!! TGAAAATTCATTTTTAAAGT+TGG + chr3_1:56305495-56305514 None:intergenic 15.0%
!!! AATTTTTTTAATGTTATGAC+CGG - chr3_1:56307125-56307144 Msa0363680:intron 15.0%
!! TCCAAAAATAACTTAAATAA+CGG - chr3_1:56308202-56308221 Msa0363680:intron 15.0%
!! ATTATTCATAAAATTTGTCA+AGG - chr3_1:56309102-56309121 Msa0363680:intron 15.0%
!! TTATTCATAAAATTTGTCAA+GGG - chr3_1:56309103-56309122 Msa0363680:intron 15.0%
!!! TTTTTTTTCTTCTTTCTCAA+AGG + chr3_1:56301046-56301065 None:intergenic 20.0%
!!! AGTTCAAATTTTTATGCTTA+TGG - chr3_1:56301309-56301328 Msa0363680:CDS 20.0%
!!! ATTATGTTTTTGTTGTACAA+GGG - chr3_1:56301511-56301530 Msa0363680:CDS 20.0%
!! TAGATAAGTAATCAATGTTA+GGG - chr3_1:56301688-56301707 Msa0363680:intron 20.0%
!! AGCAATATATGTATATTCAT+CGG + chr3_1:56301760-56301779 None:intergenic 20.0%
!! ATTCTATCATGTTATTCATA+CGG + chr3_1:56302121-56302140 None:intergenic 20.0%
!! TGAATAATAGTTATAAGTAC+TGG + chr3_1:56302205-56302224 None:intergenic 20.0%
!!! CATGTATATTTGTTTAAAGT+AGG - chr3_1:56302495-56302514 Msa0363680:intron 20.0%
!!! TTTTCAATTTACATGTATTG+TGG - chr3_1:56302525-56302544 Msa0363680:intron 20.0%
!! ATTAAAAAATCATCACAACA+GGG + chr3_1:56302901-56302920 None:intergenic 20.0%
!! GATATGTATGAATTATAAAG+GGG - chr3_1:56303039-56303058 Msa0363680:intron 20.0%
!! TAAATTATTCATTTCAGTCA+AGG + chr3_1:56303073-56303092 None:intergenic 20.0%
!! CTACTTATTGATGTTTATAT+TGG - chr3_1:56303167-56303186 Msa0363680:intron 20.0%
!! TCCTATAAAAAAATAAAGCT+CGG + chr3_1:56304176-56304195 None:intergenic 20.0%
!!! TCTGATATTAAGTTGAATAT+TGG - chr3_1:56304955-56304974 Msa0363680:intron 20.0%
!! TTAATAACTGGTTATACTAT+AGG - chr3_1:56305382-56305401 Msa0363680:intron 20.0%
!! TAATAACTGGTTATACTATA+GGG - chr3_1:56305383-56305402 Msa0363680:intron 20.0%
!!! TTTTATGTTTGTTTTTATCG+TGG - chr3_1:56305990-56306009 Msa0363680:intron 20.0%
!! AATTCGTTAAAGAAAGAAAA+TGG + chr3_1:56306634-56306653 None:intergenic 20.0%
!! TTAAAAGAATGCACATTAAA+AGG + chr3_1:56306756-56306775 None:intergenic 20.0%
!!! GCATTCTTTTAAATTTTAAC+AGG - chr3_1:56306764-56306783 Msa0363680:intron 20.0%
!!! AAATTTTAACAGGTAATTTC+AGG - chr3_1:56306774-56306793 Msa0363680:intron 20.0%
!!! TAAATTTTAAGCTATACCTT+AGG - chr3_1:56306901-56306920 Msa0363680:intron 20.0%
!!! ACTTTTCGATTTCAATAATT+AGG + chr3_1:56307102-56307121 None:intergenic 20.0%
!!! ATTTTTTTAATGTTATGACC+GGG - chr3_1:56307126-56307145 Msa0363680:intron 20.0%
!! AAATTAAGAACGAAATTACT+AGG + chr3_1:56307531-56307550 None:intergenic 20.0%
!!! ATTTTCTAGTTGTAAACTTT+TGG - chr3_1:56307547-56307566 Msa0363680:intron 20.0%
!!! TTTTCTAGTTGTAAACTTTT+GGG - chr3_1:56307548-56307567 Msa0363680:intron 20.0%
!! GAATAACAAGATATAGAATA+TGG - chr3_1:56307656-56307675 Msa0363680:intron 20.0%
!! ATATGGATATGTACATTATT+TGG - chr3_1:56307673-56307692 Msa0363680:intron 20.0%
!! TATGTACATTATTTGGTATA+TGG - chr3_1:56307680-56307699 Msa0363680:intron 20.0%
!! CAAAAAGTAAAAAGAAATAG+AGG - chr3_1:56308457-56308476 Msa0363680:intron 20.0%
!! GCAAAAAAAAAACTGATTAA+AGG + chr3_1:56308620-56308639 None:intergenic 20.0%
!!! ATGTTATTTTCTTCTTTGAT+CGG - chr3_1:56309062-56309081 Msa0363680:intron 20.0%
!! GTATTCATTTCTATAACATT+TGG + chr3_1:56309129-56309148 None:intergenic 20.0%
! ATTAACTTTGTAAGCTATTC+TGG - chr3_1:56301072-56301091 Msa0363680:intron 25.0%
! AACAAAGAAACATCAAGAAA+AGG + chr3_1:56301228-56301247 None:intergenic 25.0%
! ATGAAAGATCATGACAAAAA+GGG + chr3_1:56301285-56301304 None:intergenic 25.0%
! AATGAAAGATCATGACAAAA+AGG + chr3_1:56301286-56301305 None:intergenic 25.0%
!!! GATTATGTTTTTGTTGTACA+AGG - chr3_1:56301510-56301529 Msa0363680:CDS 25.0%
!! GTATGTGCTTAGATATTTTT+GGG - chr3_1:56301583-56301602 Msa0363680:intron 25.0%
!!! GCTAATGTTTTGATAGATAT+TGG - chr3_1:56301627-56301646 Msa0363680:intron 25.0%
!!! ATTCGTGAAATTGATTTTAC+TGG - chr3_1:56301653-56301672 Msa0363680:intron 25.0%
!! CTAACATTGATTACTTATCT+AGG + chr3_1:56301689-56301708 None:intergenic 25.0%
! CTAGATAAGTAATCAATGTT+AGG - chr3_1:56301687-56301706 Msa0363680:intron 25.0%
!!! ACCTCTATTGTGTTTTTTAT+TGG - chr3_1:56301853-56301872 Msa0363680:intron 25.0%
!!! CCTCTATTGTGTTTTTTATT+GGG - chr3_1:56301854-56301873 Msa0363680:intron 25.0%
!!! CTCTATTGTGTTTTTTATTG+GGG - chr3_1:56301855-56301874 Msa0363680:intron 25.0%
!! TTTTATTAAAGTGGCACTAA+TGG - chr3_1:56301888-56301907 Msa0363680:CDS 25.0%
!! AGTTGTACTTTTATAACGTT+TGG - chr3_1:56302043-56302062 Msa0363680:intron 25.0%
! TTACCATCTTAAAATTTGAG+AGG - chr3_1:56302351-56302370 Msa0363680:intron 25.0%
! TACATGTTAACAATTGCTTA+TGG + chr3_1:56302481-56302500 None:intergenic 25.0%
!!! TTAATTTCCCCGTTTTATTT+GGG - chr3_1:56302566-56302585 Msa0363680:intron 25.0%
! ATTAGAAACCCCAAATAAAA+CGG + chr3_1:56302578-56302597 None:intergenic 25.0%
! GATTAAAAAATCATCACAAC+AGG + chr3_1:56302902-56302921 None:intergenic 25.0%
!!! TTGTTTCTCTTCTTTTGTAT+TGG - chr3_1:56302957-56302976 Msa0363680:intron 25.0%
!! CATTGATTAGAATGTAATGA+AGG + chr3_1:56303020-56303039 None:intergenic 25.0%
! ACTAGCTATCATGATTAAAA+AGG - chr3_1:56303132-56303151 Msa0363680:intron 25.0%
! CTATCATGATTAAAAAGGTA+TGG - chr3_1:56303137-56303156 Msa0363680:intron 25.0%
!!! TAAGTACTGACAAACTATAA+TGG + chr3_1:56303599-56303618 None:intergenic 25.0%
! CTGTAATAATAATACAGAAC+AGG + chr3_1:56303680-56303699 None:intergenic 25.0%
! TCATCAAATTTCAATCGAAA+TGG - chr3_1:56303941-56303960 Msa0363680:CDS 25.0%
! AATAAAAGGTCATCAGAAAT+GGG + chr3_1:56304005-56304024 None:intergenic 25.0%
! AAATAAAAGGTCATCAGAAA+TGG + chr3_1:56304006-56304025 None:intergenic 25.0%
! TTCTATCACGAGAAAATAAA+AGG + chr3_1:56304019-56304038 None:intergenic 25.0%
! CCTATAAAAAAATAAAGCTC+GGG + chr3_1:56304175-56304194 None:intergenic 25.0%
! ATATTTACAGTACAGATAAC+AGG - chr3_1:56304243-56304262 Msa0363680:intron 25.0%
! TATTTACAGTACAGATAACA+GGG - chr3_1:56304244-56304263 Msa0363680:intron 25.0%
! TTTAAAAACACAAACATGAC+AGG + chr3_1:56304422-56304441 None:intergenic 25.0%
! TTTATGATTTGAACGTCTTA+AGG - chr3_1:56304474-56304493 Msa0363680:intron 25.0%
! GACTGTTATACTGTATAATT+GGG + chr3_1:56304632-56304651 None:intergenic 25.0%
!! AAATAGGCATTGTCAATTAA+TGG + chr3_1:56305003-56305022 None:intergenic 25.0%
! AACTATGGAAATCAACAAAT+AGG + chr3_1:56305019-56305038 None:intergenic 25.0%
!! GTTTTCACAAACATTAACTA+TGG + chr3_1:56305034-56305053 None:intergenic 25.0%
! AATAACTGGTTATACTATAG+GGG - chr3_1:56305384-56305403 Msa0363680:intron 25.0%
!!! ATGTATATCAGATGTTTTTG+TGG - chr3_1:56305428-56305447 Msa0363680:intron 25.0%
!!! AAAACATTTTGGAAAAGAGA+TGG + chr3_1:56305574-56305593 None:intergenic 25.0%
!! TATAGCAAAGCAAAACATTT+TGG + chr3_1:56305585-56305604 None:intergenic 25.0%
!!! TACTTTTTTTTGACATAGCA+TGG - chr3_1:56305603-56305622 Msa0363680:intron 25.0%
! TCTTGATATTATTGAATGCA+TGG + chr3_1:56305796-56305815 None:intergenic 25.0%
! ATTCAGATCAAATACCTTAT+CGG + chr3_1:56306095-56306114 None:intergenic 25.0%
! GACTGATATATCTCAATATT+TGG + chr3_1:56306305-56306324 None:intergenic 25.0%
! AAGAAAGAAAATGGATGATA+AGG + chr3_1:56306625-56306644 None:intergenic 25.0%
!! TATTTATTTCTCATTACAGC+CGG + chr3_1:56306717-56306736 None:intergenic 25.0%
! GCTGTAATGAGAAATAAATA+CGG - chr3_1:56306717-56306736 Msa0363680:intron 25.0%
! TTTCGATTTCAATAATTAGG+TGG + chr3_1:56307099-56307118 None:intergenic 25.0%
! AATAAATATACGAGTTGCTA+TGG - chr3_1:56307152-56307171 Msa0363680:intron 25.0%
!! ATTCACATGTCTTAGTATTT+TGG + chr3_1:56307292-56307311 None:intergenic 25.0%
!!! TTGTAAACTTTTGGGAATAT+TGG - chr3_1:56307556-56307575 Msa0363680:intron 25.0%
!!! ATCTTTTATTTGAAAGAGTG+GGG + chr3_1:56307879-56307898 None:intergenic 25.0%
!!! CATCTTTTATTTGAAAGAGT+GGG + chr3_1:56307880-56307899 None:intergenic 25.0%
!!! TCATCTTTTATTTGAAAGAG+TGG + chr3_1:56307881-56307900 None:intergenic 25.0%
!!! GCCGTTATTTAAGTTATTTT+TGG + chr3_1:56308206-56308225 None:intergenic 25.0%
!! TTTTTGTCAAGAAAAGAGAT+TGG + chr3_1:56308443-56308462 None:intergenic 25.0%
! AAGTAAAAAGAAATAGAGGA+AGG - chr3_1:56308461-56308480 Msa0363680:intron 25.0%
!!! TTTTTTGCTTCTCAATCTAT+TGG - chr3_1:56308632-56308651 Msa0363680:intron 25.0%
!!! ATTTTGATGAATGATGTCTT+AGG - chr3_1:56308762-56308781 Msa0363680:intron 25.0%
!! ATATACCAAAGCATTTGAAA+TGG - chr3_1:56308793-56308812 Msa0363680:intron 25.0%
! ATCACTTATTATGTAAAGTG+AGG + chr3_1:56308917-56308936 None:intergenic 25.0%
! ATTTATCTACACCTTTGATA+TGG + chr3_1:56309443-56309462 None:intergenic 25.0%
TTATGTGTTGCATGATTGAT+TGG - chr3_1:56301355-56301374 Msa0363680:CDS 30.0%
AAAATATCTAAGCACATACC+TGG + chr3_1:56301582-56301601 None:intergenic 30.0%
! GGTATGTGCTTAGATATTTT+TGG - chr3_1:56301582-56301601 Msa0363680:intron 30.0%
TCAAAACATTAGCAATGTTG+AGG + chr3_1:56301620-56301639 None:intergenic 30.0%
CAGAATATAATCTACCTTCA+TGG + chr3_1:56301734-56301753 None:intergenic 30.0%
ATTGTACCAAAATCTCACAT+AGG + chr3_1:56301784-56301803 None:intergenic 30.0%
CCCAATAAAAAACACAATAG+AGG + chr3_1:56301857-56301876 None:intergenic 30.0%
!!! ATTGTGTTTTTTATTGGGGA+AGG - chr3_1:56301859-56301878 Msa0363680:intron 30.0%
!!! TTGTGTTTTTTATTGGGGAA+GGG - chr3_1:56301860-56301879 Msa0363680:intron 30.0%
! AGGGGGAAATTTTATTAAAG+TGG - chr3_1:56301879-56301898 Msa0363680:CDS 30.0%
AATTTGAATTCTGTACCTTG+AGG - chr3_1:56301935-56301954 Msa0363680:CDS 30.0%
CATGTTATTCATACGGATAA+TGG + chr3_1:56302114-56302133 None:intergenic 30.0%
!! ATAGTTATAAGTACTGGCTA+AGG + chr3_1:56302199-56302218 None:intergenic 30.0%
!! AGACCTCTCAAATTTTAAGA+TGG + chr3_1:56302357-56302376 None:intergenic 30.0%
!! GTTAATTTCCCCGTTTTATT+TGG - chr3_1:56302565-56302584 Msa0363680:intron 30.0%
!!! TAATTTCCCCGTTTTATTTG+GGG - chr3_1:56302567-56302586 Msa0363680:intron 30.0%
TTAGAAACCCCAAATAAAAC+GGG + chr3_1:56302577-56302596 None:intergenic 30.0%
! TTGGGGTTTCTAATTTTCTA+TGG - chr3_1:56302584-56302603 Msa0363680:intron 30.0%
ATAAACAGTGTTATCAATGG+CGG + chr3_1:56302774-56302793 None:intergenic 30.0%
TGCATAAACAGTGTTATCAA+TGG + chr3_1:56302777-56302796 None:intergenic 30.0%
TCATATGGAGTTAATGAAAG+TGG + chr3_1:56302833-56302852 None:intergenic 30.0%
CACAAGAAAAGCAAATCATA+TGG + chr3_1:56302848-56302867 None:intergenic 30.0%
!!! CATATGATTTGCTTTTCTTG+TGG - chr3_1:56302846-56302865 Msa0363680:intron 30.0%
GGTTGCTATATTGAATATCA+AGG - chr3_1:56302874-56302893 Msa0363680:intron 30.0%
CTTCTCATTAGGTGATAAAT+TGG + chr3_1:56302994-56303013 None:intergenic 30.0%
AATGAAGGAAACTTCTCATT+AGG + chr3_1:56303005-56303024 None:intergenic 30.0%
TAAGCATCTAGTAGTGTTTA+CGG - chr3_1:56303266-56303285 Msa0363680:intron 30.0%
! AGTCTTTTTCCTTTCTTGTA+TGG - chr3_1:56303628-56303647 Msa0363680:intron 30.0%
GTATTATTATTACAGCGTGA+AGG - chr3_1:56303685-56303704 Msa0363680:intron 30.0%
ATAAAAGGTCATCAGAAATG+GGG + chr3_1:56304004-56304023 None:intergenic 30.0%
!!! CCCGAGCTTTATTTTTTTAT+AGG - chr3_1:56304172-56304191 Msa0363680:intron 30.0%
ATGCAAGAAGTAAACAAATC+AGG + chr3_1:56304369-56304388 None:intergenic 30.0%
! AAGTCTATGTGTAGACTTTT+TGG - chr3_1:56304390-56304409 Msa0363680:intron 30.0%
!!! GATTTTGAGGTAGAAACTAT+TGG - chr3_1:56304506-56304525 Msa0363680:intron 30.0%
!! GGTAGAAACTATTGGTTTAA+AGG - chr3_1:56304514-56304533 Msa0363680:intron 30.0%
AAAATGTGGAACAAGACTTA+AGG - chr3_1:56304562-56304581 Msa0363680:intron 30.0%
CGACTGTTATACTGTATAAT+TGG + chr3_1:56304633-56304652 None:intergenic 30.0%
TTATTTATTATTACTGGGGC+AGG + chr3_1:56304863-56304882 None:intergenic 30.0%
! TTGTCAATTAATGGTTAGCT+TGG + chr3_1:56304994-56305013 None:intergenic 30.0%
CCATTCAATGACAAGAAATA+TGG + chr3_1:56305519-56305538 None:intergenic 30.0%
CCATATTTCTTGTCATTGAA+TGG - chr3_1:56305516-56305535 Msa0363680:intron 30.0%
GCATGTTGTTCATTTATGTA+TGG + chr3_1:56305552-56305571 None:intergenic 30.0%
ATTGTAAATGCAGCAAATGT+AGG + chr3_1:56305895-56305914 None:intergenic 30.0%
! AAGATGCATTTTTGTCCTTT+GGG + chr3_1:56306054-56306073 None:intergenic 30.0%
! AAAGATGCATTTTTGTCCTT+TGG + chr3_1:56306055-56306074 None:intergenic 30.0%
AATGCATCTTTAGTGATACA+TGG - chr3_1:56306064-56306083 Msa0363680:intron 30.0%
ATGCATCTTTAGTGATACAT+GGG - chr3_1:56306065-56306084 Msa0363680:intron 30.0%
TCTGAATCCTTGGTTATAAA+AGG - chr3_1:56306108-56306127 Msa0363680:intron 30.0%
! GTAAACACCTTTTATAACCA+AGG + chr3_1:56306118-56306137 None:intergenic 30.0%
ACACACACAAGTTAACAAAA+TGG - chr3_1:56306998-56307017 Msa0363680:CDS 30.0%
ACTCGTATATTTATTCTTCC+CGG + chr3_1:56307147-56307166 None:intergenic 30.0%
CAGATGAAAAATATGTGAAC+TGG - chr3_1:56307345-56307364 Msa0363680:intron 30.0%
!! TTCATATCGACATTTGTTGT+TGG - chr3_1:56307476-56307495 Msa0363680:CDS 30.0%
TTGCTCATTTCTTAACTTAG+CGG - chr3_1:56307590-56307609 Msa0363680:intron 30.0%
ACATATTAATAGCCAACACT+AGG + chr3_1:56308183-56308202 None:intergenic 30.0%
!! ATCCTACTGATTTCATGTTA+AGG - chr3_1:56308333-56308352 Msa0363680:intron 30.0%
!! TCCTACTGATTTCATGTTAA+GGG - chr3_1:56308334-56308353 Msa0363680:intron 30.0%
AGATTGGTAAATGGAATAAG+CGG + chr3_1:56308427-56308446 None:intergenic 30.0%
CAAGAAAAGAGATTGGTAAA+TGG + chr3_1:56308436-56308455 None:intergenic 30.0%
TTGATCTGATCTACTATGTT+AGG + chr3_1:56308659-56308678 None:intergenic 30.0%
! ACTGGATCTAGAAAATTTTG+AGG - chr3_1:56308679-56308698 Msa0363680:intron 30.0%
GAAAGTTCTTTATCTCTTTC+TGG - chr3_1:56308720-56308739 Msa0363680:intron 30.0%
TAGAACCATTTCAAATGCTT+TGG + chr3_1:56308801-56308820 None:intergenic 30.0%
!!! ATGGTTCTAAACCTCAATTT+TGG - chr3_1:56308812-56308831 Msa0363680:intron 30.0%
!! TGATGTCCCAATTGATTTTA+CGG - chr3_1:56308865-56308884 Msa0363680:intron 30.0%
ACATAATAAGTGATGACAAG+TGG - chr3_1:56308923-56308942 Msa0363680:intron 30.0%
TAAAAGAAAATAAGGAGACG+AGG - chr3_1:56309008-56309027 Msa0363680:intron 30.0%
! TTTTTACAGAGTTCAACTGA+TGG - chr3_1:56309151-56309170 Msa0363680:intron 30.0%
GCAATTGTTCAATCAAAATG+TGG - chr3_1:56309220-56309239 Msa0363680:intron 30.0%
! TTTGCTGTAATGAACAACAT+TGG + chr3_1:56309317-56309336 None:intergenic 30.0%
! TCTCTTTTTATGATCACCAT+TGG + chr3_1:56309359-56309378 None:intergenic 30.0%
TAAGGGTAAATCCATATCAA+AGG - chr3_1:56309429-56309448 Msa0363680:intron 30.0%
TACAAAGAATTAGAACTGAC+AGG - chr3_1:56309498-56309517 Msa0363680:intron 30.0%
GATACACTAGTTACTGAATA+TGG - chr3_1:56309610-56309629 Msa0363680:CDS 30.0%
TCAAAGGAAATGAGAGAAGA+AGG + chr3_1:56301030-56301049 None:intergenic 35.0%
CTTTCCTACATAGAAGATGT+TGG - chr3_1:56301144-56301163 Msa0363680:three_prime_UTR 35.0%
TTTCAAGCAAAACGTGAGAT+GGG + chr3_1:56301197-56301216 None:intergenic 35.0%
!! TTTTCAAGCAAAACGTGAGA+TGG + chr3_1:56301198-56301217 None:intergenic 35.0%
! TCACGTTTTGCTTGAAAAAG+TGG - chr3_1:56301200-56301219 Msa0363680:three_prime_UTR 35.0%
! CACGTTTTGCTTGAAAAAGT+GGG - chr3_1:56301201-56301220 Msa0363680:three_prime_UTR 35.0%
TGGTTAATGTAGTGATCTTC+TGG - chr3_1:56301375-56301394 Msa0363680:CDS 35.0%
TGGTTCTTGAGCTGAAATTT+GGG - chr3_1:56301395-56301414 Msa0363680:CDS 35.0%
!! ATCAATGTTAGGGTGTTGAA+TGG - chr3_1:56301698-56301717 Msa0363680:intron 35.0%
!! TCAATGTTAGGGTGTTGAAT+GGG - chr3_1:56301699-56301718 Msa0363680:intron 35.0%
!!! ATGGGTTTTTTGTACCATGA+AGG - chr3_1:56301717-56301736 Msa0363680:intron 35.0%
! TTGCTACCTATGTGAGATTT+TGG - chr3_1:56301775-56301794 Msa0363680:intron 35.0%
!! TGTGAGATTTTGGTACAATG+TGG - chr3_1:56301785-56301804 Msa0363680:intron 35.0%
!!! TGTGTTTTTTATTGGGGAAG+GGG - chr3_1:56301861-56301880 Msa0363680:intron 35.0%
TACAGAATTCAAATTCCCTC+GGG + chr3_1:56301930-56301949 None:intergenic 35.0%
GTACAGAATTCAAATTCCCT+CGG + chr3_1:56301931-56301950 None:intergenic 35.0%
ACCTCAAGTGTAACATCTAT+TGG - chr3_1:56301990-56302009 Msa0363680:intron 35.0%
ACCAATAGATGTTACACTTG+AGG + chr3_1:56301994-56302013 None:intergenic 35.0%
!! TATAAGTACTGGCTAAGGTT+TGG + chr3_1:56302194-56302213 None:intergenic 35.0%
ACATTGGTAGGACAGTTATT+TGG + chr3_1:56302230-56302249 None:intergenic 35.0%
AAATAACTGTCCTACCAATG+TGG - chr3_1:56302229-56302248 Msa0363680:intron 35.0%
AATAACTGTCCTACCAATGT+GGG - chr3_1:56302230-56302249 Msa0363680:intron 35.0%
TGAGTAGTAGCTATAAGTGT+TGG + chr3_1:56302419-56302438 None:intergenic 35.0%
!!! TGTGGCTAGTATTGTTTTGA+CGG - chr3_1:56302543-56302562 Msa0363680:intron 35.0%
TAGAAACCCCAAATAAAACG+GGG + chr3_1:56302576-56302595 None:intergenic 35.0%
!! GGTTTTATATCATTCGCCAT+AGG - chr3_1:56302658-56302677 Msa0363680:intron 35.0%
AAACATGGTATTGCAGTCTA+TGG + chr3_1:56302705-56302724 None:intergenic 35.0%
GACTGCAATACCATGTTTAT+TGG - chr3_1:56302707-56302726 Msa0363680:intron 35.0%
TGCAATACCATGTTTATTGG+CGG - chr3_1:56302710-56302729 Msa0363680:intron 35.0%
TTAAACTCCGCCAATAAACA+TGG + chr3_1:56302720-56302739 None:intergenic 35.0%
!!! ATGATTTGCTTTTCTTGTGG+TGG - chr3_1:56302849-56302868 Msa0363680:intron 35.0%
AAGCATCTAGTAGTGTTTAC+GGG - chr3_1:56303267-56303286 Msa0363680:intron 35.0%
CCTTTCTTGTATGGTTTATG+CGG - chr3_1:56303637-56303656 Msa0363680:intron 35.0%
! TGAAATGGTAATGATGCTTC+AGG + chr3_1:56303721-56303740 None:intergenic 35.0%
!! TTTGAAGTTTGTTATCAGCC+AGG - chr3_1:56303798-56303817 Msa0363680:intron 35.0%
TTCTCGTGATAGAATGTTGA+TGG - chr3_1:56304025-56304044 Msa0363680:intron 35.0%
AGAAACTTTCTGAACTGCAT+GGG - chr3_1:56304077-56304096 Msa0363680:intron 35.0%
!! AAGGTACTTTCGTGATTTTG+AGG - chr3_1:56304493-56304512 Msa0363680:intron 35.0%
TTGGTTTAAAGGAGACATCA+CGG - chr3_1:56304525-56304544 Msa0363680:intron 35.0%
TTAAGGATACAGTTCTTGAC+TGG - chr3_1:56304579-56304598 Msa0363680:intron 35.0%
TAAGGATACAGTTCTTGACT+GGG - chr3_1:56304580-56304599 Msa0363680:intron 35.0%
ACTGTATAATTGGGACCTAA+TGG + chr3_1:56304623-56304642 None:intergenic 35.0%
GTAGTAGTAGTAGTAATTCG+AGG - chr3_1:56304685-56304704 Msa0363680:CDS 35.0%
TAGTAGTAGTAATTCGAGGT+GGG - chr3_1:56304689-56304708 Msa0363680:CDS 35.0%
GTCACTAAATAAGGTTTGAG+CGG - chr3_1:56304791-56304810 Msa0363680:intron 35.0%
ATGTCCTTAATCATATCCCA+AGG + chr3_1:56305064-56305083 None:intergenic 35.0%
! AAAGGCATACAAAGATACTC+AGG + chr3_1:56305129-56305148 None:intergenic 35.0%
TTGTATGCCTTTGTATGTAC+AGG - chr3_1:56305137-56305156 Msa0363680:intron 35.0%
GCAGATATAGTGTTATGCTT+GGG - chr3_1:56305210-56305229 Msa0363680:intron 35.0%
!!! TTTTGTGGTTTGTTGATGAG+TGG - chr3_1:56305443-56305462 Msa0363680:intron 35.0%
AGTTGTCATTGTAAATCTCC+AGG - chr3_1:56305702-56305721 Msa0363680:intron 35.0%
TAAAATGTAGAAGGTGGCTA+GGG + chr3_1:56305746-56305765 None:intergenic 35.0%
TTAAAATGTAGAAGGTGGCT+AGG + chr3_1:56305747-56305766 None:intergenic 35.0%
CCTCATTAAAATGTAGAAGG+TGG + chr3_1:56305752-56305771 None:intergenic 35.0%
!! CCACCTTCTACATTTTAATG+AGG - chr3_1:56305749-56305768 Msa0363680:intron 35.0%
CCACCTCATTAAAATGTAGA+AGG + chr3_1:56305755-56305774 None:intergenic 35.0%
!! CCTTCTACATTTTAATGAGG+TGG - chr3_1:56305752-56305771 Msa0363680:intron 35.0%
AGTTGATCAAAGTGATACAC+GGG + chr3_1:56305861-56305880 None:intergenic 35.0%
CAGTTGATCAAAGTGATACA+CGG + chr3_1:56305862-56305881 None:intergenic 35.0%
TGTATCACTTTGATCAACTG+TGG - chr3_1:56305862-56305881 Msa0363680:intron 35.0%
! AGATGCATTTTTGTCCTTTG+GGG + chr3_1:56306053-56306072 None:intergenic 35.0%
AGGTATTTGATCTGAATCCT+TGG - chr3_1:56306098-56306117 Msa0363680:intron 35.0%
TCACACAGTGACTACAAATA+TGG - chr3_1:56306203-56306222 Msa0363680:CDS 35.0%
CACACAGTGACTACAAATAT+GGG - chr3_1:56306204-56306223 Msa0363680:CDS 35.0%
ATAGTCCTCACATCAAAAGT+CGG - chr3_1:56306251-56306270 Msa0363680:intron 35.0%
!! ACATCAAAAGTCGGTTTTGT+TGG - chr3_1:56306260-56306279 Msa0363680:intron 35.0%
CTAAGTCAATTTACTTGGCA+AGG + chr3_1:56306455-56306474 None:intergenic 35.0%
! CTTGCCAAGTAAATTGACTT+AGG - chr3_1:56306453-56306472 Msa0363680:intron 35.0%
CACACCTAAGTCAATTTACT+TGG + chr3_1:56306460-56306479 None:intergenic 35.0%
TTCAAGAAATCAGACGACAA+GGG + chr3_1:56306577-56306596 None:intergenic 35.0%
!!! AAGTGTTCGCTGTTTTTTTC+CGG - chr3_1:56306695-56306714 Msa0363680:CDS 35.0%
!! ATGCACATTAAAAGGCATCA+AGG + chr3_1:56306748-56306767 None:intergenic 35.0%
AAAAGGTCAATCCTGATGAA+AGG + chr3_1:56306831-56306850 None:intergenic 35.0%
GCACTACAATAATCTGGAAA+AGG + chr3_1:56306848-56306867 None:intergenic 35.0%
CAAAACTCAAGTACATCCTA+AGG + chr3_1:56306920-56306939 None:intergenic 35.0%
!! AGGATGTACTTGAGTTTTGA+TGG - chr3_1:56306921-56306940 Msa0363680:intron 35.0%
ATGCAGCTTACTAGAAGAAT+GGG + chr3_1:56307049-56307068 None:intergenic 35.0%
TATGCAGCTTACTAGAAGAA+TGG + chr3_1:56307050-56307069 None:intergenic 35.0%
GAACGAAATTACTAGGTTCA+AGG + chr3_1:56307524-56307543 None:intergenic 35.0%
!! ACTTTTGGGAATATTGGTGT+TGG - chr3_1:56307562-56307581 Msa0363680:intron 35.0%
!! CTTTTGGGAATATTGGTGTT+GGG - chr3_1:56307563-56307582 Msa0363680:intron 35.0%
!!! TGGTTTTGGACATGATATCA+AGG - chr3_1:56307821-56307840 Msa0363680:intron 35.0%
ATGATATCAAGGCCTCTATT+TGG - chr3_1:56307832-56307851 Msa0363680:intron 35.0%
ATCAATATCCGACCAAATAG+AGG + chr3_1:56307847-56307866 None:intergenic 35.0%
AGAACGTAGATAATGTGAAG+CGG + chr3_1:56308066-56308085 None:intergenic 35.0%
TAACTTAAATAACGGCATCC+AGG - chr3_1:56308210-56308229 Msa0363680:intron 35.0%
TGAAACAAAACTGGGATTGT+GGG + chr3_1:56308239-56308258 None:intergenic 35.0%
! TCACTCTCACTGGAATATTT+TGG + chr3_1:56308300-56308319 None:intergenic 35.0%
TCCCTTAACATGAAATCAGT+AGG + chr3_1:56308338-56308357 None:intergenic 35.0%
ATGTTAAGGGAAAGTGAGAA+TGG - chr3_1:56308347-56308366 Msa0363680:intron 35.0%
CAGTGAGGAAATTGAGAAAA+AGG + chr3_1:56308378-56308397 None:intergenic 35.0%
! CTTTTTCTCAATTTCCTCAC+TGG - chr3_1:56308376-56308395 Msa0363680:intron 35.0%
AAGAAAGTTATGTTCCAGTG+AGG + chr3_1:56308393-56308412 None:intergenic 35.0%
AAATGGTTGCTTATCCAGAA+TGG + chr3_1:56308557-56308576 None:intergenic 35.0%
TTCTGGATAAGCAACCATTT+CGG - chr3_1:56308557-56308576 Msa0363680:intron 35.0%
AAAACACACTGCATAAGTGT+GGG + chr3_1:56308593-56308612 None:intergenic 35.0%
AAAAACACACTGCATAAGTG+TGG + chr3_1:56308594-56308613 None:intergenic 35.0%
CATAGTAGATCAGATCAAAC+TGG - chr3_1:56308661-56308680 Msa0363680:intron 35.0%
AATTGGGACATCAACTTCAA+GGG + chr3_1:56308858-56308877 None:intergenic 35.0%
GTCTCACCGTAAAATCAATT+GGG + chr3_1:56308874-56308893 None:intergenic 35.0%
TGTCTCACCGTAAAATCAAT+TGG + chr3_1:56308875-56308894 None:intergenic 35.0%
ATTCCAAAAGCTGAAAGACA+AGG - chr3_1:56309198-56309217 Msa0363680:intron 35.0%
TTCTTTCGATAACAGCATTC+TGG + chr3_1:56309246-56309265 None:intergenic 35.0%
AGAATGCTGTTATCGAAAGA+AGG - chr3_1:56309245-56309264 Msa0363680:intron 35.0%
AAGAGAAAAGATAGCTTGAC+TGG - chr3_1:56309373-56309392 Msa0363680:intron 35.0%
AAGCGTTCAAAAGCTTCTAA+GGG - chr3_1:56309412-56309431 Msa0363680:intron 35.0%
! GCATCAAGAACACCATTTTA+GGG + chr3_1:56309577-56309596 None:intergenic 35.0%
! AGCATCAAGAACACCATTTT+AGG + chr3_1:56309578-56309597 None:intergenic 35.0%
CTGAATATGGTGTGTAATCT+TGG - chr3_1:56309623-56309642 Msa0363680:exon 35.0%
GTTGCCAACATCTTCTATGT+AGG + chr3_1:56301151-56301170 None:intergenic 40.0%
ATAGAAGATGTTGGCAACGT+TGG - chr3_1:56301153-56301172 Msa0363680:three_prime_UTR 40.0%
! TCATGACAAAAAGGGCACAA+AGG + chr3_1:56301277-56301296 None:intergenic 40.0%
! CTGGTTCTTGAGCTGAAATT+TGG - chr3_1:56301394-56301413 Msa0363680:CDS 40.0%
TTCTTGAGCTGAAATTTGGG+TGG - chr3_1:56301398-56301417 Msa0363680:CDS 40.0%
GTACAATGTGGAAATCTGCT+AGG - chr3_1:56301797-56301816 Msa0363680:intron 40.0%
!!! GTGTTTTTTATTGGGGAAGG+GGG - chr3_1:56301862-56301881 Msa0363680:intron 40.0%
AATTCAAATTCCCTCGGGAA+CGG + chr3_1:56301925-56301944 None:intergenic 40.0%
AACTTAGTCGTGTAACCTCA+AGG + chr3_1:56301953-56301972 None:intergenic 40.0%
AGTCTATCCTAGATCTGTTG+GGG + chr3_1:56302328-56302347 None:intergenic 40.0%
GAGTCTATCCTAGATCTGTT+GGG + chr3_1:56302329-56302348 None:intergenic 40.0%
AGAGTCTATCCTAGATCTGT+TGG + chr3_1:56302330-56302349 None:intergenic 40.0%
! ATGATAGGTTTTGCAGCCTA+TGG + chr3_1:56302677-56302696 None:intergenic 40.0%
CAGTCTATGGAGGATATGAT+AGG + chr3_1:56302692-56302711 None:intergenic 40.0%
!! TTTGCTTTTCTTGTGGTGGA+TGG - chr3_1:56302853-56302872 Msa0363680:intron 40.0%
GCAGGAATATCAACTTCTTG+TGG - chr3_1:56303291-56303310 Msa0363680:intron 40.0%
! TGTGGTATACCTGATTTTCG+AGG - chr3_1:56303309-56303328 Msa0363680:intron 40.0%
! TCATCTGTTTCTCTCACGTT+TGG - chr3_1:56303444-56303463 Msa0363680:intron 40.0%
CCGCATAAACCATACAAGAA+AGG + chr3_1:56303640-56303659 None:intergenic 40.0%
ATCATTACCATTTCACCGTG+CGG - chr3_1:56303726-56303745 Msa0363680:intron 40.0%
! GGCTCTGGTTGAATTAGAAA+AGG - chr3_1:56303768-56303787 Msa0363680:intron 40.0%
CTGGTTGAATTAGAAAAGGC+TGG - chr3_1:56303772-56303791 Msa0363680:intron 40.0%
AAAAACGCAGTGATTCTACC+TGG + chr3_1:56303819-56303838 None:intergenic 40.0%
CAATCGAAATGGCCATTCTT+TGG - chr3_1:56303952-56303971 Msa0363680:CDS 40.0%
TTGGTATTCCAGATCGAAGA+TGG + chr3_1:56304054-56304073 None:intergenic 40.0%
! ATCTTCGATCTGGAATACCA+AGG - chr3_1:56304053-56304072 Msa0363680:intron 40.0%
! TCTTCGATCTGGAATACCAA+GGG - chr3_1:56304054-56304073 Msa0363680:intron 40.0%
AGTTCAGAAAGTTTCTCCCT+TGG + chr3_1:56304073-56304092 None:intergenic 40.0%
GAGAAACTTTCTGAACTGCA+TGG - chr3_1:56304076-56304095 Msa0363680:intron 40.0%
ACTGCATGGGAATTCTTTCA+TGG - chr3_1:56304090-56304109 Msa0363680:intron 40.0%
AAATCAGGCTAAGTCTACAG+AGG + chr3_1:56304354-56304373 None:intergenic 40.0%
GTATAATTGGGACCTAATGG+TGG + chr3_1:56304620-56304639 None:intergenic 40.0%
GTAGTAGTAGTAATTCGAGG+TGG - chr3_1:56304688-56304707 Msa0363680:CDS 40.0%
! GGTTAACGGGTCACTAAATA+AGG - chr3_1:56304782-56304801 Msa0363680:intron 40.0%
!! TAAGGTTTGAGCGGATTAGT+CGG - chr3_1:56304800-56304819 Msa0363680:intron 40.0%
TTGTGAAAACTGTTGTGCCT+TGG - chr3_1:56305044-56305063 Msa0363680:CDS 40.0%
TGTGAAAACTGTTGTGCCTT+GGG - chr3_1:56305045-56305064 Msa0363680:CDS 40.0%
TGTGCCTTGGGATATGATTA+AGG - chr3_1:56305057-56305076 Msa0363680:CDS 40.0%
GGCAGATATAGTGTTATGCT+TGG - chr3_1:56305209-56305228 Msa0363680:intron 40.0%
TAGTGTTATGCTTGGGAACA+AGG - chr3_1:56305217-56305236 Msa0363680:intron 40.0%
!! ATAACAGTAGCGAAGTACTG+GGG + chr3_1:56305311-56305330 None:intergenic 40.0%
! CATAACAGTAGCGAAGTACT+GGG + chr3_1:56305312-56305331 None:intergenic 40.0%
ACATAACAGTAGCGAAGTAC+TGG + chr3_1:56305313-56305332 None:intergenic 40.0%
TACAAGTGAAGACAGGTAGA+GGG + chr3_1:56305346-56305365 None:intergenic 40.0%
AAACTCGTACAAGTGAAGAC+AGG + chr3_1:56305353-56305372 None:intergenic 40.0%
TGAATGCATGGTGAGATAGA+TGG + chr3_1:56305784-56305803 None:intergenic 40.0%
TGATACACGGGACAATCATA+CGG + chr3_1:56305849-56305868 None:intergenic 40.0%
AACTCTTCAGAAAACCCCAA+AGG - chr3_1:56306036-56306055 Msa0363680:intron 40.0%
! GATACATGGGTTTTCCGATA+AGG - chr3_1:56306078-56306097 Msa0363680:intron 40.0%
GAACATGGGGTGAAATGATA+GGG + chr3_1:56306179-56306198 None:intergenic 40.0%
TGAACATGGGGTGAAATGAT+AGG + chr3_1:56306180-56306199 None:intergenic 40.0%
ACTGTGTGACATTGAACATG+GGG + chr3_1:56306192-56306211 None:intergenic 40.0%
CACTGTGTGACATTGAACAT+GGG + chr3_1:56306193-56306212 None:intergenic 40.0%
TCACTGTGTGACATTGAACA+TGG + chr3_1:56306194-56306213 None:intergenic 40.0%
!! CAAAACCGACTTTTGATGTG+AGG + chr3_1:56306259-56306278 None:intergenic 40.0%
AATCAGACGACAAGGGAATT+CGG + chr3_1:56306570-56306589 None:intergenic 40.0%
CTTCAAGAAATCAGACGACA+AGG + chr3_1:56306578-56306597 None:intergenic 40.0%
! ACAGGTAATTTCAGGTGTCA+TGG - chr3_1:56306782-56306801 Msa0363680:intron 40.0%
AAGGAGGAATCTGCATGTTA+AGG + chr3_1:56306812-56306831 None:intergenic 40.0%
GAGCATGCACTACAATAATC+TGG + chr3_1:56306854-56306873 None:intergenic 40.0%
TGCAGCTTACTAGAAGAATG+GGG + chr3_1:56307048-56307067 None:intergenic 40.0%
!!! GAAAGGCAATGCTGCTTTTT+GGG + chr3_1:56307396-56307415 None:intergenic 40.0%
!!! TGAAAGGCAATGCTGCTTTT+TGG + chr3_1:56307397-56307416 None:intergenic 40.0%
AGGTTCAAGGACGTAACAAA+AGG + chr3_1:56307511-56307530 None:intergenic 40.0%
AACTTGGGCGTTTGGAAAAA+TGG - chr3_1:56307801-56307820 Msa0363680:intron 40.0%
! GGCGTTTGGAAAAATGGTTT+TGG - chr3_1:56307807-56307826 Msa0363680:intron 40.0%
TATCAAGGCCTCTATTTGGT+CGG - chr3_1:56307836-56307855 Msa0363680:intron 40.0%
CATTGCTTAAAGCCCAACAA+AGG - chr3_1:56307973-56307992 Msa0363680:intron 40.0%
ACATCTCATCACGCAATAGT+CGG + chr3_1:56308003-56308022 None:intergenic 40.0%
GAAACAAAACTGGGATTGTG+GGG + chr3_1:56308238-56308257 None:intergenic 40.0%
CTGAAACAAAACTGGGATTG+TGG + chr3_1:56308240-56308259 None:intergenic 40.0%
! CAATCTGGGATTGACAACAT+AGG - chr3_1:56308273-56308292 Msa0363680:intron 40.0%
TCATCTGATTTCACTCTCAC+TGG + chr3_1:56308310-56308329 None:intergenic 40.0%
AAATGGAATAAGCGGAGATC+AGG + chr3_1:56308419-56308438 None:intergenic 40.0%
! GCATATATGTCCTTTTCTGC+AGG - chr3_1:56308498-56308517 Msa0363680:intron 40.0%
AAGAAGGAAACCTGCAGAAA+AGG + chr3_1:56308511-56308530 None:intergenic 40.0%
! TTTTCTGCAGGTTTCCTTCT+TGG - chr3_1:56308510-56308529 Msa0363680:intron 40.0%
AGCAACCATTTCGGCTTAAA+AGG - chr3_1:56308566-56308585 Msa0363680:intron 40.0%
!! CTAAACCTCAATTTTGGCGA+TGG - chr3_1:56308818-56308837 Msa0363680:intron 40.0%
CAATTGGGACATCAACTTCA+AGG + chr3_1:56308859-56308878 None:intergenic 40.0%
TGATGGCTTCAACTTTGACA+AGG - chr3_1:56309168-56309187 Msa0363680:intron 40.0%
! TTGCCTTGTCTTTCAGCTTT+TGG + chr3_1:56309204-56309223 None:intergenic 40.0%
TAGGTAGTAATCTCGCTTCT+AGG + chr3_1:56309283-56309302 None:intergenic 40.0%
AACATTGGTCACAACTGCAT+AGG + chr3_1:56309302-56309321 None:intergenic 40.0%
! CACCATTGGTTAGAGAATCA+GGG + chr3_1:56309345-56309364 None:intergenic 40.0%
! TCACCATTGGTTAGAGAATC+AGG + chr3_1:56309346-56309365 None:intergenic 40.0%
! GAAGCGTTCAAAAGCTTCTA+AGG - chr3_1:56309411-56309430 Msa0363680:intron 40.0%
TATGGTGTGTAATCTTGGTG+TGG - chr3_1:56309628-56309647 Msa0363680:exon 40.0%
!! GGTTGGTTGGTGAATGAGTT+TGG + chr3_1:56301100-56301119 None:intergenic 45.0%
ACCAACCAACCATGTCTCTT+GGG - chr3_1:56301109-56301128 Msa0363680:three_prime_UTR 45.0%
GAGACGTTGAAATGTTGACC+AGG - chr3_1:56301561-56301580 Msa0363680:CDS 45.0%
! CATTTTACAACCGTTCCCGA+GGG - chr3_1:56301912-56301931 Msa0363680:CDS 45.0%
TTGTGTTGAGAGTCCCACAT+TGG + chr3_1:56302246-56302265 None:intergenic 45.0%
GAACATTTGAAGGGTGACTC+AGG - chr3_1:56302285-56302304 Msa0363680:intron 45.0%
CTAACTCAACCCCACAAAAC+CGG - chr3_1:56302375-56302394 Msa0363680:intron 45.0%
TAACTCAACCCCACAAAACC+GGG - chr3_1:56302376-56302395 Msa0363680:intron 45.0%
GACATATCTCCCTTACAACC+CGG + chr3_1:56302397-56302416 None:intergenic 45.0%
CATGGTATTGCAGTCTATGG+AGG + chr3_1:56302702-56302721 None:intergenic 45.0%
!! TCAATGGCGGATATGACAGA+TGG + chr3_1:56302761-56302780 None:intergenic 45.0%
! TGGTAATGATGCTTCAGGCA+AGG + chr3_1:56303716-56303735 None:intergenic 45.0%
CTGAATTCGGCTCCAAAGAA+TGG + chr3_1:56303967-56303986 None:intergenic 45.0%
ATGGAAACTTGCCCTTCTTG+TGG - chr3_1:56304109-56304128 Msa0363680:intron 45.0%
CGTACTCAGTTCCACAAGAA+GGG + chr3_1:56304123-56304142 None:intergenic 45.0%
TCGTACTCAGTTCCACAAGA+AGG + chr3_1:56304124-56304143 None:intergenic 45.0%
CGCTGTTCGAATGCAAAATG+TGG - chr3_1:56304548-56304567 Msa0363680:intron 45.0%
GTACAACACTGTCCACCATT+AGG - chr3_1:56304605-56304624 Msa0363680:intron 45.0%
! CAGTTCGGTCGGTTTCAAAT+GGG + chr3_1:56304729-56304748 None:intergenic 45.0%
!! AAGGTTTGAGCGGATTAGTC+GGG - chr3_1:56304801-56304820 Msa0363680:intron 45.0%
!! TCGGTTTGGGTGAGTGAATT+GGG - chr3_1:56304824-56304843 Msa0363680:intron 45.0%
AGTGCGTCCTGTACATACAA+AGG + chr3_1:56305147-56305166 None:intergenic 45.0%
TCAGCAGGATTCATCTCCTT+TGG + chr3_1:56305174-56305193 None:intergenic 45.0%
!! AGCGAAGTACTGGGGAAAAA+AGG + chr3_1:56305303-56305322 None:intergenic 45.0%
GTACAAGTGAAGACAGGTAG+AGG + chr3_1:56305347-56305366 None:intergenic 45.0%
TTAAGAGGCAAGTTGCATGC+TGG + chr3_1:56305661-56305680 None:intergenic 45.0%
! TTGCCTCTTAAAGCACTTCG+CGG - chr3_1:56305670-56305689 Msa0363680:intron 45.0%
ACAAAAAGGGGAGACAAACC+TGG + chr3_1:56305723-56305742 None:intergenic 45.0%
AAGGTGGCTAGGGACAAAAA+GGG + chr3_1:56305736-56305755 None:intergenic 45.0%
!!! CGGTTTTGTTGGATTGAGCT+AGG - chr3_1:56306271-56306290 Msa0363680:intron 45.0%
TGCAGATTCCTCCTTTCATC+AGG - chr3_1:56306817-56306836 Msa0363680:intron 45.0%
AGGTCAATCCTGATGAAAGG+AGG + chr3_1:56306828-56306847 None:intergenic 45.0%
TAGCGTGAGATTGTGAGTGT+GGG + chr3_1:56306979-56306998 None:intergenic 45.0%
ACCTCGACAGACTTGATGAA+AGG + chr3_1:56307413-56307432 None:intergenic 45.0%
TTGTGCCTTCTCTAGCAACT+TGG - chr3_1:56307785-56307804 Msa0363680:intron 45.0%
TGTGCCTTCTCTAGCAACTT+GGG - chr3_1:56307786-56307805 Msa0363680:intron 45.0%
!! ATAGTCGGTTGGCCTTTGTT+GGG + chr3_1:56307988-56308007 None:intergenic 45.0%
!! AATAGTCGGTTGGCCTTTGT+TGG + chr3_1:56307989-56308008 None:intergenic 45.0%
ATAATGTGAAGCGGAGAGAG+GGG + chr3_1:56308057-56308076 None:intergenic 45.0%
GATAATGTGAAGCGGAGAGA+GGG + chr3_1:56308058-56308077 None:intergenic 45.0%
AGATAATGTGAAGCGGAGAG+AGG + chr3_1:56308059-56308078 None:intergenic 45.0%
TTTCATTCTCTGCTGCGAAC+TGG - chr3_1:56308089-56308108 Msa0363680:intron 45.0%
TGTTGGAATGTGAAGAGGCA+AGG + chr3_1:56308148-56308167 None:intergenic 45.0%
ATGGCTGTTGGAATGTGAAG+AGG + chr3_1:56308153-56308172 None:intergenic 45.0%
CTAGGAATTGTCATGGCTGT+TGG + chr3_1:56308165-56308184 None:intergenic 45.0%
GCCATGACAATTCCTAGTGT+TGG - chr3_1:56308168-56308187 Msa0363680:intron 45.0%
GCCAACACTAGGAATTGTCA+TGG + chr3_1:56308172-56308191 None:intergenic 45.0%
GAAGCGGCTGAAACAAAACT+GGG + chr3_1:56308247-56308266 None:intergenic 45.0%
AGGTTTCAAACCAGCCATTC+TGG - chr3_1:56308540-56308559 Msa0363680:intron 45.0%
! TGGGACCTTTTAAGCCGAAA+TGG + chr3_1:56308574-56308593 None:intergenic 45.0%
TAATCTCGCTTCTAGGTGTC+AGG + chr3_1:56309276-56309295 None:intergenic 45.0%
GTCCCTGATTCTCTAACCAA+TGG - chr3_1:56309340-56309359 Msa0363680:intron 45.0%
TGACTGGTACAAGTTCGTCT+AGG - chr3_1:56309389-56309408 Msa0363680:intron 45.0%
GCACTCAGTCTTCCCTAAAA+TGG - chr3_1:56309562-56309581 Msa0363680:CDS 45.0%
!! AATTATTATTTATTATTACT+GGG + chr3_1:56304868-56304887 None:intergenic 5.0%
!! AAATTATTATTTATTATTAC+TGG + chr3_1:56304869-56304888 None:intergenic 5.0%
!!! TTTTGAAAATTTATTATTTT+CGG - chr3_1:56307729-56307748 Msa0363680:intron 5.0%
CACCAACCAACCATGTCTCT+TGG - chr3_1:56301108-56301127 Msa0363680:three_prime_UTR 50.0%
ACCCAAGAGACATGGTTGGT+TGG + chr3_1:56301113-56301132 None:intergenic 50.0%
GCATACCCAAGAGACATGGT+TGG + chr3_1:56301117-56301136 None:intergenic 50.0%
CTCAGCATACCCAAGAGACA+TGG + chr3_1:56301121-56301140 None:intergenic 50.0%
CCTCGGGAACGGTTGTAAAA+TGG + chr3_1:56301914-56301933 None:intergenic 50.0%
! CCATTTTACAACCGTTCCCG+AGG - chr3_1:56301911-56301930 Msa0363680:CDS 50.0%
! CACTTGAGGTGCTAGCTAAG+TGG + chr3_1:56301980-56301999 None:intergenic 50.0%
GTTGAGAGTCCCACATTGGT+AGG + chr3_1:56302242-56302261 None:intergenic 50.0%
AACACAAATCCCTCACACCC+AGG - chr3_1:56302259-56302278 Msa0363680:intron 50.0%
ACACAAATCCCTCACACCCA+GGG - chr3_1:56302260-56302279 Msa0363680:intron 50.0%
ACCCAGGGCTGAACATTTGA+AGG - chr3_1:56302275-56302294 Msa0363680:intron 50.0%
CCCTTCAAATGTTCAGCCCT+GGG + chr3_1:56302279-56302298 None:intergenic 50.0%
CCCAGGGCTGAACATTTGAA+GGG - chr3_1:56302276-56302295 Msa0363680:intron 50.0%
ACCCTTCAAATGTTCAGCCC+TGG + chr3_1:56302280-56302299 None:intergenic 50.0%
GACTCAGGTGTCCCAATAAC+AGG - chr3_1:56302300-56302319 Msa0363680:intron 50.0%
! CTGTTGGGGCACCTGTTATT+GGG + chr3_1:56302314-56302333 None:intergenic 50.0%
! TCTGTTGGGGCACCTGTTAT+TGG + chr3_1:56302315-56302334 None:intergenic 50.0%
!! CCTTACAACCCGGTTTTGTG+GGG + chr3_1:56302387-56302406 None:intergenic 50.0%
!! CCCTTACAACCCGGTTTTGT+GGG + chr3_1:56302388-56302407 None:intergenic 50.0%
CCCACAAAACCGGGTTGTAA+GGG - chr3_1:56302385-56302404 Msa0363680:intron 50.0%
! TCCCTTACAACCCGGTTTTG+TGG + chr3_1:56302389-56302408 None:intergenic 50.0%
TTGTCCATATGTTTCCGCCG+TGG - chr3_1:56302620-56302639 Msa0363680:intron 50.0%
AGTACCACGGCGGAAACATA+TGG + chr3_1:56302627-56302646 None:intergenic 50.0%
!! ATGGCGGATATGACAGATGG+CGG + chr3_1:56302758-56302777 None:intergenic 50.0%
CTAGTAGTGTTTACGGGTGC+AGG - chr3_1:56303273-56303292 Msa0363680:intron 50.0%
!! ACCTGATTTTCGAGGTCCCA+AGG - chr3_1:56303317-56303336 Msa0363680:intron 50.0%
!! CCTGATTTTCGAGGTCCCAA+GGG - chr3_1:56303318-56303337 Msa0363680:intron 50.0%
!! CTGATTTTCGAGGTCCCAAG+GGG - chr3_1:56303319-56303338 Msa0363680:intron 50.0%
! TGAAGCGTCCAAATCCCCTT+GGG + chr3_1:56303336-56303355 None:intergenic 50.0%
AGAGCCATGTGAGTCAAGCT+TGG + chr3_1:56303754-56303773 None:intergenic 50.0%
AAGCTTGACTCACATGGCTC+TGG - chr3_1:56303753-56303772 Msa0363680:intron 50.0%
GATGGTCTCCATCTTCGATC+TGG - chr3_1:56304043-56304062 Msa0363680:intron 50.0%
AAGCTCGGGCAAGATTAGCA+TGG + chr3_1:56304161-56304180 None:intergenic 50.0%
GGATACAGTTCTTGACTGGG+AGG - chr3_1:56304583-56304602 Msa0363680:intron 50.0%
! TTCGGTCGGTTTCAAATGGG+TGG + chr3_1:56304726-56304745 None:intergenic 50.0%
! CCAGTTCGGTCGGTTTCAAA+TGG + chr3_1:56304730-56304749 None:intergenic 50.0%
! CCATTTGAAACCGACCGAAC+TGG - chr3_1:56304727-56304746 Msa0363680:intron 50.0%
! GGTGGGTCAGTTTGGGTTAA+CGG - chr3_1:56304768-56304787 Msa0363680:intron 50.0%
! GTGGGTCAGTTTGGGTTAAC+GGG - chr3_1:56304769-56304788 Msa0363680:intron 50.0%
!! TTTGAGCGGATTAGTCGGGT+CGG - chr3_1:56304805-56304824 Msa0363680:intron 50.0%
!! GTCGGTTTGGGTGAGTGAAT+TGG - chr3_1:56304823-56304842 Msa0363680:intron 50.0%
TGAGTGAATTGGGCCCAAAC+CGG - chr3_1:56304834-56304853 Msa0363680:intron 50.0%
TTATTACTGGGGCAGGACAC+CGG + chr3_1:56304856-56304875 None:intergenic 50.0%
GCAGGATTCATCTCCTTTGG+AGG + chr3_1:56305171-56305190 None:intergenic 50.0%
TGTTTGCAGTGCTTCTCAGC+AGG + chr3_1:56305189-56305208 None:intergenic 50.0%
!! TGCTGAGAAGCACTGCAAAC+AGG - chr3_1:56305188-56305207 Msa0363680:intron 50.0%
AGGTGGCTAGGGACAAAAAG+GGG + chr3_1:56305735-56305754 None:intergenic 50.0%
GAAGGTGGCTAGGGACAAAA+AGG + chr3_1:56305737-56305756 None:intergenic 50.0%
CTTTGATCAACTGTGGCCAC+TGG - chr3_1:56305869-56305888 Msa0363680:intron 50.0%
ATGCAGCAAATGTAGGCCAG+TGG + chr3_1:56305888-56305907 None:intergenic 50.0%
! GTAGTGCATGCTCTGAGCAA+TGG - chr3_1:56306861-56306880 Msa0363680:intron 50.0%
GTAGCGTGAGATTGTGAGTG+TGG + chr3_1:56306980-56306999 None:intergenic 50.0%
GGGCATGAGTACTTGCAACT+TGG + chr3_1:56307376-56307395 None:intergenic 50.0%
GCCTTTCATCAAGTCTGTCG+AGG - chr3_1:56307409-56307428 Msa0363680:CDS 50.0%
ACTTAGCGGTGAATTGCACG+TGG - chr3_1:56307604-56307623 Msa0363680:intron 50.0%
AACGCCCAAGTTGCTAGAGA+AGG + chr3_1:56307793-56307812 None:intergenic 50.0%
TCTCTAGCAACTTGGGCGTT+TGG - chr3_1:56307793-56307812 Msa0363680:intron 50.0%
CTCATCACGCAATAGTCGGT+TGG + chr3_1:56307999-56308018 None:intergenic 50.0%
AATGTGAAGAGGCAAGGACG+CGG + chr3_1:56308142-56308161 None:intergenic 50.0%
CGAAGCGGCTGAAACAAAAC+TGG + chr3_1:56308248-56308267 None:intergenic 50.0%
GTTTCCTTCTTGGACCAGGA+AGG - chr3_1:56308520-56308539 Msa0363680:intron 50.0%
GAAACCTTCCTGGTCCAAGA+AGG + chr3_1:56308527-56308546 None:intergenic 50.0%
!! TGGCTGGTTTGAAACCTTCC+TGG + chr3_1:56308537-56308556 None:intergenic 50.0%
GGTTGCTTATCCAGAATGGC+TGG + chr3_1:56308553-56308572 None:intergenic 50.0%
!! CTCAATTTTGGCGATGGCTG+CGG - chr3_1:56308824-56308843 Msa0363680:intron 50.0%
ATGTTCAGCCCTGGGTGTGA+GGG + chr3_1:56302271-56302290 None:intergenic 55.0%
AATGTTCAGCCCTGGGTGTG+AGG + chr3_1:56302272-56302291 None:intergenic 55.0%
ACAGGTGCCCCAACAGATCT+AGG - chr3_1:56302318-56302337 Msa0363680:intron 55.0%
CCCCACAAAACCGGGTTGTA+AGG - chr3_1:56302384-56302403 Msa0363680:intron 55.0%
CCCTTGGGACCTCGAAAATC+AGG + chr3_1:56303321-56303340 None:intergenic 55.0%
TTCGAGGTCCCAAGGGGATT+TGG - chr3_1:56303325-56303344 Msa0363680:intron 55.0%
! CTGAAGCGTCCAAATCCCCT+TGG + chr3_1:56303337-56303356 None:intergenic 55.0%
CAAGGGGATTTGGACGCTTC+AGG - chr3_1:56303335-56303354 Msa0363680:CDS 55.0%
GGTGCCAAGCTTGACTCACA+TGG - chr3_1:56303747-56303766 Msa0363680:intron 55.0%
! TGCACACGGGTTGACCAGTT+CGG + chr3_1:56304744-56304763 None:intergenic 55.0%
CTGGTCAACCCGTGTGCAAT+CGG - chr3_1:56304746-56304765 Msa0363680:intron 55.0%
TGGTCAACCCGTGTGCAATC+GGG - chr3_1:56304747-56304766 Msa0363680:intron 55.0%
TGCAATCGGGTGGGTCAGTT+TGG - chr3_1:56304760-56304779 Msa0363680:intron 55.0%
GCAATCGGGTGGGTCAGTTT+GGG - chr3_1:56304761-56304780 Msa0363680:intron 55.0%
!! CGGATTAGTCGGGTCGGTTT+GGG - chr3_1:56304811-56304830 Msa0363680:intron 55.0%
! CCTCTTAAAGCACTTCGCGG+CGG - chr3_1:56305673-56305692 Msa0363680:intron 55.0%
!! CGGCAAGGTGTTGAAAGAGC+TGG + chr3_1:56306550-56306569 None:intergenic 55.0%
GACGACAAGGGAATTCGGCA+AGG + chr3_1:56306565-56306584 None:intergenic 55.0%
TCCCAGATTGCGTAGCGAAG+CGG + chr3_1:56308263-56308282 None:intergenic 55.0%
GCAGGTTTCCTTCTTGGACC+AGG - chr3_1:56308516-56308535 Msa0363680:intron 55.0%
CGCAGCCATCGCCAAAATTG+AGG + chr3_1:56308826-56308845 None:intergenic 55.0%
CTCGCTTCTAGGTGTCAGGA+TGG + chr3_1:56309272-56309291 None:intergenic 55.0%
TCCGCCGTGGTACTACAGCA+TGG - chr3_1:56302633-56302652 Msa0363680:intron 60.0%
GCCATGCTGTAGTACCACGG+CGG + chr3_1:56302637-56302656 None:intergenic 60.0%
GCCGTGGTACTACAGCATGG+CGG - chr3_1:56302636-56302655 Msa0363680:intron 60.0%
CCCGCCATGCTGTAGTACCA+CGG + chr3_1:56302640-56302659 None:intergenic 60.0%
CCGTGGTACTACAGCATGGC+GGG - chr3_1:56302637-56302656 Msa0363680:intron 60.0%
CTTGGCACCGCACGGTGAAA+TGG + chr3_1:56303736-56303755 None:intergenic 60.0%
GAGTCAAGCTTGGCACCGCA+CGG + chr3_1:56303744-56303763 None:intergenic 60.0%
! CACGGGTTGACCAGTTCGGT+CGG + chr3_1:56304740-56304759 None:intergenic 60.0%
TCAACCCGTGTGCAATCGGG+TGG - chr3_1:56304750-56304769 Msa0363680:intron 60.0%
CAACCCGTGTGCAATCGGGT+GGG - chr3_1:56304751-56304770 Msa0363680:intron 60.0%
TGACCCACCCGATTGCACAC+GGG + chr3_1:56304757-56304776 None:intergenic 60.0%
CTGACCCACCCGATTGCACA+CGG + chr3_1:56304758-56304777 None:intergenic 60.0%
!! GCGGATTAGTCGGGTCGGTT+TGG - chr3_1:56304810-56304829 Msa0363680:intron 60.0%
ACAGGACGCACTGCCTCCAA+AGG - chr3_1:56305155-56305174 Msa0363680:intron 60.0%
! CCGCCGCGAAGTGCTTTAAG+AGG + chr3_1:56305676-56305695 None:intergenic 60.0%
! CTTAAAGCACTTCGCGGCGG+AGG - chr3_1:56305676-56305695 Msa0363680:intron 60.0%
GAAGCGGAGAGAGGGGTCTT+GGG + chr3_1:56308050-56308069 None:intergenic 60.0%
TGAAGCGGAGAGAGGGGTCT+TGG + chr3_1:56308051-56308070 None:intergenic 60.0%
! AACTGGGATTGTGGGGTGCC+TGG + chr3_1:56308231-56308250 None:intergenic 60.0%
AGCCGCTTCGCTACGCAATC+TGG - chr3_1:56308258-56308277 Msa0363680:intron 60.0%
GCCGCTTCGCTACGCAATCT+GGG - chr3_1:56308259-56308278 Msa0363680:intron 60.0%
!! CTGGGGCAGGACACCGGTTT+GGG + chr3_1:56304850-56304869 None:intergenic 65.0%
! ACTGGGGCAGGACACCGGTT+TGG + chr3_1:56304851-56304870 None:intergenic 65.0%
GTGAAGAGGCAAGGACGCGG+CGG + chr3_1:56308139-56308158 None:intergenic 65.0%
GGCGGCGGCAGCTTGGACAA+CGG + chr3_1:56308118-56308137 None:intergenic 70.0%
AAGAGGCAAGGACGCGGCGG+CGG + chr3_1:56308136-56308155 None:intergenic 70.0%
! AGGCAAGGACGCGGCGGCGG+CGG + chr3_1:56308133-56308152 None:intergenic 80.0%
! ACGCGGCGGCGGCGGCAGCT+TGG + chr3_1:56308125-56308144 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 56300998 56309761 56300998 ID=Msa0363680;Name=Msa0363680
chr3_1 mRNA 56300998 56309761 56300998 ID=Msa0363680-mRNA-1;Parent=Msa0363680;Name=Msa0363680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=122|0.92|0.86|1|0.92|0.86|15|280|478
chr3_1 exon 56300998 56301071 56300998 ID=Msa0363680-mRNA-1:exon:10357;Parent=Msa0363680-mRNA-1
chr3_1 exon 56301097 56301599 56301097 ID=Msa0363680-mRNA-1:exon:10356;Parent=Msa0363680-mRNA-1
chr3_1 exon 56301873 56301975 56301873 ID=Msa0363680-mRNA-1:exon:10355;Parent=Msa0363680-mRNA-1
chr3_1 exon 56302172 56302239 56302172 ID=Msa0363680-mRNA-1:exon:10354;Parent=Msa0363680-mRNA-1
chr3_1 exon 56303329 56303411 56303329 ID=Msa0363680-mRNA-1:exon:10353;Parent=Msa0363680-mRNA-1
chr3_1 exon 56303877 56303973 56303877 ID=Msa0363680-mRNA-1:exon:10352;Parent=Msa0363680-mRNA-1
chr3_1 exon 56304660 56304713 56304660 ID=Msa0363680-mRNA-1:exon:10351;Parent=Msa0363680-mRNA-1
chr3_1 exon 56305036 56305138 56305036 ID=Msa0363680-mRNA-1:exon:10350;Parent=Msa0363680-mRNA-1
chr3_1 exon 56305521 56305600 56305521 ID=Msa0363680-mRNA-1:exon:10349;Parent=Msa0363680-mRNA-1
chr3_1 exon 56306155 56306263 56306155 ID=Msa0363680-mRNA-1:exon:10348;Parent=Msa0363680-mRNA-1
chr3_1 exon 56306622 56306722 56306622 ID=Msa0363680-mRNA-1:exon:10347;Parent=Msa0363680-mRNA-1
chr3_1 exon 56306940 56307059 56306940 ID=Msa0363680-mRNA-1:exon:10346;Parent=Msa0363680-mRNA-1
chr3_1 exon 56307403 56307495 56307403 ID=Msa0363680-mRNA-1:exon:10345;Parent=Msa0363680-mRNA-1
chr3_1 exon 56307606 56307635 56307606 ID=Msa0363680-mRNA-1:exon:10344;Parent=Msa0363680-mRNA-1
chr3_1 exon 56309541 56309761 56309541 ID=Msa0363680-mRNA-1:exon:10343;Parent=Msa0363680-mRNA-1
chr3_1 five_prime_UTR 56309640 56309761 56309640 ID=Msa0363680-mRNA-1:five_prime_utr;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56309541 56309639 56309541 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56307606 56307635 56307606 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56307403 56307495 56307403 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56306940 56307059 56306940 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56306622 56306722 56306622 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56306155 56306263 56306155 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56305521 56305600 56305521 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56305036 56305138 56305036 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56304660 56304713 56304660 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56303877 56303973 56303877 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56303329 56303411 56303329 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56302172 56302239 56302172 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56301873 56301975 56301873 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 CDS 56301303 56301599 56301303 ID=Msa0363680-mRNA-1:cds;Parent=Msa0363680-mRNA-1
chr3_1 three_prime_UTR 56301097 56301302 56301097 ID=Msa0363680-mRNA-1:three_prime_utr;Parent=Msa0363680-mRNA-1
chr3_1 three_prime_UTR 56300998 56301071 56300998 ID=Msa0363680-mRNA-1:three_prime_utr;Parent=Msa0363680-mRNA-1
Gene Sequence

>Msa0363680

ATGTCTCTTGGGTATGCTGAGAAACTTTCCTACATAGAAGATGTTGGCAACGTTGGAATGACAGAACATTTCGACCCATCTCACGTTTTGCTTGAAAAAATAGAGCAACTAGCTATCATGATTAAAAAGAGTAAGCATCTAGTAGTGTTTACGGGTGCAGGAATATCAACTTCTTGTGGTATACCTGATTTTCGAGGTCCCAAGGGGATTTGGACGCTTCAGCGTGAAGGTAAAGCCTTGCCTGAAGCATCATTACCATTTCACCGTGCGGTGCCAAGCTTGACTCACATGGCTCTGGTTGAATTAGAAAAGGCTGGTATTTTGAAGTTTGTTATCAGCCAGAATGTTGATGGTCTCCATCTTCGATCTGGAATACCAAGGGAGAAACTTTCTGAACTGCATGGGAATTCTTTCATGGAAACTTGCCCTTCTTGTGGAACTGAGTACTTTCGTGATTTTGAGGTAGAAACTATTGGTTTAAAGGAGACATCACGGCGCTGTTCGAATGCAAAATGTGGAACAAGACTTAAGGATACAGTTCTTGACTGGGAGGACGCACTGCCTCCAAAGGAGATGAATCCTGCTGAGAAGCACTGCAAACAGGCAGATATAGTGTTATGCTTGGGAACAAGCATGGCTGAAATCTCTCAATGCAGTCTGCAAATAACTCCAGCATGCAACTTGCCTCTTAAAGCACTTCGCGGCGGAGGTCAAGTTGTCATTGTAAATCTCCAGAAAACCCCAAAGGACAAAAATGCATCTTTAGTGATACATGGGTTTTCCGATAAGGTAATTTCAGGTGTCATGGAGCACCTTAACATGCAGATTCCTCCTTTCATCAGGATTGACCTTTTCCAGATTATTGTAGTGCATGCTCTGAGCAATGATGAAAAATATGTGAACTGGACTCTCCAAGTTGCAAGTACTCATGCCCAAAAAGCAGCATTGCCTTTCATCAAGTCTGTCGAGGTTTCCTTCTTGGACCAGGAAGGTTTCAAACCAGCCATTCTGGATAAGCAACCATTTCGGCTTAAAAGGAGAACAGCATATACCAAAGCATTTGAAATGGTTCTAAACCTCAATTTTGGCGATGGCTGCGGTTGCTCGTCCCTTGAAGTTGATGTCCCAATTGATTTTACGAGTTCAACTGATGGCTTCAACTTTGACAAGGATGTCATATTCCAAAAGCTGAAAGACAAGGCAATTGTTCAATCAAAATGTGGCCAGAATGCTGTTATCGAAAGAAGGACCATCCTGACACCTAGAAGCGAGATTACTACCTATGCAGTTGTGACCAATGTTGTTCATTACAGCAAAGCAGTCCCTGATTCTCTAACCAATGGTGATCATAAAAAGAGAAAAGATAGCTTGACTGGTACAAGTTCGTCTAGGAAGCGTTCAAAAGCTTCTAAGGGTAAATCCATATCAAAGGTGTAG

Protein sequence

>Msa0363680

MSLGYAEKLSYIEDVGNVGMTEHFDPSHVLLEKIEQLAIMIKKSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQREGKALPEASLPFHRAVPSLTHMALVELEKAGILKFVISQNVDGLHLRSGIPREKLSELHGNSFMETCPSCGTEYFRDFEVETIGLKETSRRCSNAKCGTRLKDTVLDWEDALPPKEMNPAEKHCKQADIVLCLGTSMAEISQCSLQITPACNLPLKALRGGGQVVIVNLQKTPKDKNASLVIHGFSDKVISGVMEHLNMQIPPFIRIDLFQIIVVHALSNDEKYVNWTLQVASTHAQKAALPFIKSVEVSFLDQEGFKPAILDKQPFRLKRRTAYTKAFEMVLNLNFGDGCGCSSLEVDVPIDFTSSTDGFNFDKDVIFQKLKDKAIVQSKCGQNAVIERRTILTPRSEITTYAVVTNVVHYSKAVPDSLTNGDHKKRKDSLTGTSSSRKRSKASKGKSISKV*