AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1237890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237890 MtrunA17_Chr8g0349241 95.766 496 21 0 1 496 1 496 0.0 976
Msa1237890 MtrunA17_Chr7g0247261 61.220 410 154 3 63 468 35 443 0.0 572
Msa1237890 MtrunA17_Chr8g0349361 54.451 483 207 7 12 488 26 501 0.0 560
Msa1237890 MtrunA17_Chr7g0247251 63.969 383 136 1 88 468 14 396 0.0 558
Msa1237890 MtrunA17_Chr8g0349371 58.102 432 176 5 60 488 55 484 0.0 535
Msa1237890 MtrunA17_Chr6g0471441 53.882 425 195 1 65 488 70 494 0.0 527
Msa1237890 MtrunA17_Chr5g0397701 51.860 484 200 9 25 488 21 491 1.53e-176 505
Msa1237890 MtrunA17_Chr3g0104841 43.434 396 210 6 70 464 81 463 1.22e-119 359
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1237890 AT5G23850.1 55.083 423 185 2 65 482 99 521 0.0 536
Msa1237890 AT2G45830.4 51.163 473 212 6 31 488 39 507 0.0 530
Msa1237890 AT2G45830.1 51.163 473 212 6 31 488 39 507 0.0 530
Msa1237890 AT3G61270.1 49.272 481 235 4 11 488 10 484 6.56e-179 511
Msa1237890 AT3G48980.2 51.487 437 202 4 62 488 94 530 7.70e-179 513
Msa1237890 AT3G48980.1 51.487 437 202 4 62 488 88 524 8.81e-179 513
Msa1237890 AT2G45830.3 56.284 366 160 0 123 488 1 366 1.68e-168 481
Msa1237890 AT2G45830.6 56.284 366 160 0 123 488 1 366 1.68e-168 481
Msa1237890 AT2G45830.2 56.284 366 160 0 123 488 1 366 1.68e-168 481
Msa1237890 AT2G45830.5 56.284 366 160 0 123 488 1 366 1.68e-168 481
Msa1237890 AT3G61280.1 48.428 477 239 4 18 488 48 523 2.10e-166 481
Msa1237890 AT1G63420.1 50.000 456 211 6 49 488 113 567 3.05e-164 477
Msa1237890 AT2G45840.1 46.352 466 228 6 39 488 48 507 6.32e-160 464
Msa1237890 AT3G61290.1 50.353 425 202 4 69 488 17 437 1.01e-159 461
Msa1237890 AT3G61270.2 54.645 366 165 1 123 488 1 365 3.26e-157 452
Msa1237890 AT1G07220.1 41.837 490 259 11 18 494 25 501 4.04e-131 390
Msa1237890 AT1G63420.2 52.312 346 153 5 49 383 113 457 2.68e-125 374
Msa1237890 AT3G61280.2 50.929 269 125 4 67 329 97 364 1.25e-95 295

Find 86 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATCCATTTGAAGTAATT+TGG 0.125619 8_2:-17522829 None:intergenic
ATAGAATACCTTATGCATTT+TGG 0.203852 8_2:+17523734 Msa1237890:CDS
TGAAGAGTTTGAGTTGTATA+AGG 0.263143 8_2:-17525313 None:intergenic
CAAGGGATGTGTTCACAATA+TGG 0.273614 8_2:+17522986 Msa1237890:CDS
AAAATTCCAAGACACAAAAT+TGG 0.292197 8_2:+17523968 Msa1237890:CDS
CAAGAAGAAGAAGGAGAATA+AGG 0.295583 8_2:-17519363 None:intergenic
CCACTATAACTCTTTATTCA+TGG 0.313202 8_2:-17525386 None:intergenic
TGCTACCTTTGCAGCACTAT+TGG 0.319041 8_2:+17524261 Msa1237890:CDS
GATTAAGTTTGCTGTGGATT+GGG 0.331917 8_2:+17524313 Msa1237890:CDS
TTGATGAAAGCTTTGACTAT+TGG 0.343613 8_2:-17519303 None:intergenic
AAGGAACATGCCATACTTTC+AGG 0.348711 8_2:-17525211 None:intergenic
AATAGTAGTGCTTGTTACTT+TGG 0.349075 8_2:-17522662 None:intergenic
CCCATGGTTTAAGATCTTCA+TGG 0.352277 8_2:-17522849 None:intergenic
CAAATTATCTATGATGTACT+TGG 0.368613 8_2:-17525086 None:intergenic
TGGAAAATCAATGTACCTAT+AGG 0.373614 8_2:+17523988 Msa1237890:CDS
TGAGGTTTGTCCTGAAAGTA+TGG 0.374705 8_2:+17525201 Msa1237890:CDS
CATGTCCAAATTACTTCAAA+TGG 0.391281 8_2:+17522824 Msa1237890:CDS
CTGATTGGACCTTCTGGGGT+TGG 0.400885 8_2:+17523184 Msa1237890:CDS
AGATTAAGTTTGCTGTGGAT+TGG 0.407167 8_2:+17524312 Msa1237890:CDS
AGCATTCCAATCATGTTCTT+CGG 0.418553 8_2:-17523812 None:intergenic
TTTCTAATGGGAGATACTGC+TGG 0.418858 8_2:-17523766 None:intergenic
TCATCAATTTCTACAAGAAA+AGG 0.421386 8_2:+17525333 Msa1237890:CDS
GTGATTCCTGTATTCTCCCA+TGG 0.433081 8_2:-17522865 None:intergenic
AAGGGATGTGTTCACAATAT+GGG 0.434287 8_2:+17522987 Msa1237890:CDS
TTTCCCTTCCAAAATGCATA+AGG 0.448374 8_2:-17523742 None:intergenic
GTTTCATTGTTGCAATTTAG+TGG 0.450629 8_2:-17522733 None:intergenic
CAAACCTCAACCGCTCCTTC+AGG 0.454990 8_2:-17525187 None:intergenic
AGATGGACAAGTTGAGTTTG+AGG 0.459852 8_2:-17522755 None:intergenic
ATGCATCCGAAGAACATGAT+TGG 0.460625 8_2:+17523806 Msa1237890:CDS
TACAGGAATCACAAGAGAAA+TGG 0.461457 8_2:+17522876 Msa1237890:CDS
CAACCCCAGAAGGTCCAATC+AGG 0.463664 8_2:-17523183 None:intergenic
AAGGAAACATTTCATGGTTG+AGG 0.463785 8_2:+17525243 Msa1237890:CDS
ACATTTCATGGTTGAGGGCA+TGG 0.463967 8_2:+17525249 Msa1237890:CDS
TGAAACATTAGCTCCAAATC+AGG 0.477112 8_2:-17523048 None:intergenic
TTGCGTAATGTTGTTTCCCA+TGG 0.478952 8_2:-17523676 None:intergenic
TTGTTTCCCATGGTCTTATG+TGG 0.487471 8_2:-17523666 None:intergenic
AGGAAACATTTCATGGTTGA+GGG 0.488331 8_2:+17525244 Msa1237890:CDS
CTTAAACCATGGGAGAATAC+AGG 0.488658 8_2:+17522859 Msa1237890:CDS
GTTTGAGTTGTATAAGGAGA+AGG 0.488706 8_2:-17525307 None:intergenic
TAAGCACTTTCATCATCCAT+TGG 0.492070 8_2:+17519399 Msa1237890:CDS
TTTCATTGTTGCAATTTAGT+GGG 0.508924 8_2:-17522732 None:intergenic
AAGGCAACAAGAATGTCAAA+TGG 0.510499 8_2:+17523707 Msa1237890:CDS
CATTGAGATGAAATGTTGTT+GGG 0.512315 8_2:-17522783 None:intergenic
TCATTGAGATGAAATGTTGT+TGG 0.516754 8_2:-17522784 None:intergenic
GTAAAGAAATCATAGTACTT+AGG 0.517978 8_2:-17524230 None:intergenic
TGGTGCAAGGAAACATTTCA+TGG 0.530997 8_2:+17525237 Msa1237890:CDS
TTTAGGCTTGTGGTTGTGGA+TGG 0.532168 8_2:+17522925 Msa1237890:CDS
ATTAAGTTTGCTGTGGATTG+GGG 0.532995 8_2:+17524314 Msa1237890:CDS
AATACCTGAAGGAGCGGTTG+AGG 0.538729 8_2:+17525183 Msa1237890:CDS
TTTCCTGATTGGACCTTCTG+GGG 0.541065 8_2:+17523180 Msa1237890:CDS
AATGTTGTTGGGTAGGAAGA+TGG 0.541971 8_2:-17522772 None:intergenic
GGTACAAGATTTATGCAGAA+GGG 0.544570 8_2:+17524144 Msa1237890:intron
AAGAAAAGGAGAATTTAATA+CGG 0.545091 8_2:+17525347 Msa1237890:CDS
ATGTTTCCTTGCACCACGCA+AGG 0.545435 8_2:-17525230 None:intergenic
CCATGAATAAAGAGTTATAG+TGG 0.549650 8_2:+17525386 Msa1237890:CDS
ACAAGAGAAATGGTTGAAAG+AGG 0.550127 8_2:+17522886 Msa1237890:CDS
TTGCAATTTAGTGGGAATTG+AGG 0.550148 8_2:-17522724 None:intergenic
AGAATATGGTTACTTTGTCA+AGG 0.554555 8_2:-17524346 None:intergenic
TCCATGAAGATCTTAAACCA+TGG 0.568320 8_2:+17522848 Msa1237890:CDS
ATGCAAAATCTTATCAAACA+AGG 0.570824 8_2:+17522968 Msa1237890:CDS
TAAGGAGAAGGCATTGTGCA+TGG 0.571719 8_2:-17525295 None:intergenic
GAAGTAATTTGGACATGATG+AGG 0.572075 8_2:-17522818 None:intergenic
GACTTACAAGGTCAATCCAA+TGG 0.574254 8_2:-17519415 None:intergenic
CAACAAGAATGTCAAATGGA+AGG 0.574995 8_2:+17523711 Msa1237890:CDS
TGCAAAATCTTATCAAACAA+GGG 0.578981 8_2:+17522969 Msa1237890:CDS
ATAGGCCAATAGTGCTGCAA+AGG 0.583181 8_2:-17524266 None:intergenic
CCATGAAGATCTTAAACCAT+GGG 0.585334 8_2:+17522849 Msa1237890:CDS
AGGTACAAGATTTATGCAGA+AGG 0.585736 8_2:+17524143 Msa1237890:intron
CTGAGCTCCACATAAGACCA+TGG 0.593513 8_2:+17523659 Msa1237890:CDS
TGAAGAGATTAAGTTTGCTG+TGG 0.597774 8_2:+17524307 Msa1237890:CDS
AGGCTCTATGAACATAGTCA+TGG 0.599927 8_2:-17524210 None:intergenic
GAGATGAAATGTTGTTGGGT+AGG 0.604359 8_2:-17522779 None:intergenic
GTACAAGATTTATGCAGAAG+GGG 0.604983 8_2:+17524145 Msa1237890:CDS
AGGGATGTGTTCACAATATG+GGG 0.609928 8_2:+17522988 Msa1237890:CDS
CATGTTCCTTGCGTGGTGCA+AGG 0.615342 8_2:+17525224 Msa1237890:CDS
ACATTACGCAATATACAAGA+AGG 0.621681 8_2:+17523688 Msa1237890:CDS
TAATACGGCAAGTGAAGACA+AGG 0.621694 8_2:+17525362 Msa1237890:CDS
GAAGCTTTACCAACCCCAGA+AGG 0.627314 8_2:-17523193 None:intergenic
TGAGCTCCACATAAGACCAT+GGG 0.632573 8_2:+17523660 Msa1237890:CDS
TAATTTGGACATGATGAGGA+TGG 0.632954 8_2:-17522814 None:intergenic
TTTATGCAGAAGGGGCAACA+TGG 0.637122 8_2:+17524153 Msa1237890:CDS
GTGCATGGAGGTGTATCACT+TGG 0.687133 8_2:-17525280 None:intergenic
AGTATGGCATGTTCCTTGCG+TGG 0.688064 8_2:+17525217 Msa1237890:CDS
GGAGAAGGCATTGTGCATGG+AGG 0.725676 8_2:-17525292 None:intergenic
TTGGAGCTAATGTTTCAATG+TGG 0.748673 8_2:+17523054 Msa1237890:CDS
AATACGGCAAGTGAAGACAA+GGG 0.753746 8_2:+17525363 Msa1237890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATAATATTTTAAAATT+TGG + chr8_2:17523442-17523461 Msa1237890:intron 0.0%
!! TTAAAAATTACTAATTTCAA+AGG - chr8_2:17521765-17521784 None:intergenic 10.0%
!!! ATATTAATTCATCATTTTAA+TGG - chr8_2:17522249-17522268 None:intergenic 10.0%
!! TTAAAATGATGAATTAATAT+TGG + chr8_2:17522249-17522268 Msa1237890:intron 10.0%
!! TAAAATGATGAATTAATATT+GGG + chr8_2:17522250-17522269 Msa1237890:intron 10.0%
!!! TTTACATTTTTTTTCTTTTT+AGG + chr8_2:17523635-17523654 Msa1237890:intron 10.0%
!!! TTACATTTTTTTTCTTTTTA+GGG + chr8_2:17523636-17523655 Msa1237890:intron 10.0%
!!! AAACTTTTTTTTTTTAAACT+CGG - chr8_2:17524837-17524856 None:intergenic 10.0%
!!! TACAAAAGGTTTTTTTTTTT+TGG + chr8_2:17520204-17520223 Msa1237890:intron 15.0%
!! TATAGCTATATAAAAATTGT+TGG + chr8_2:17521044-17521063 Msa1237890:intron 15.0%
!! ATATAAAAATTGTTGGAAAT+TGG + chr8_2:17521051-17521070 Msa1237890:intron 15.0%
!!! ATAGATTTTTTTTTATGAAG+AGG - chr8_2:17521520-17521539 None:intergenic 15.0%
!!! ATAGATTTTTTTTTATGAAG+AGG - chr8_2:17521520-17521539 None:intergenic 15.0%
!! TTATTAAAGATATGAATGAA+GGG - chr8_2:17522111-17522130 None:intergenic 15.0%
!! ATTATTAAAGATATGAATGA+AGG - chr8_2:17522112-17522131 None:intergenic 15.0%
!!! ATCTTTAATAATCTTTTTCT+TGG + chr8_2:17522120-17522139 Msa1237890:intron 15.0%
!! AAAATGATGAATTAATATTG+GGG + chr8_2:17522251-17522270 Msa1237890:intron 15.0%
!! TACATTTAATTCCAATTAAA+GGG - chr8_2:17523223-17523242 None:intergenic 15.0%
!! ATACATTTAATTCCAATTAA+AGG - chr8_2:17523224-17523243 None:intergenic 15.0%
!!! CAAGTCATATTTTTTTTTTT+TGG + chr8_2:17523250-17523269 Msa1237890:intron 15.0%
!! ATACAACAAAACAAAAAGAT+GGG + chr8_2:17519328-17519347 Msa1237890:CDS 20.0%
!! AAATAAAAACAAGAAGAAGA+AGG - chr8_2:17519375-17519394 None:intergenic 20.0%
!!! TAAAATTATATTTTCCCTAC+TGG - chr8_2:17519648-17519667 None:intergenic 20.0%
!! ATTATTCCTAGGAATAAATT+TGG - chr8_2:17519794-17519813 None:intergenic 20.0%
!!! AATTTTATTCCTAGGTATTT+AGG + chr8_2:17519837-17519856 Msa1237890:intron 20.0%
!! GTATTTAGGAAAAATATGTT+TGG + chr8_2:17519851-17519870 Msa1237890:intron 20.0%
!!! TATTATAATCCCTAGTTTTA+AGG - chr8_2:17519901-17519920 None:intergenic 20.0%
!! TTAAAACTAGGGATTATAAT+AGG + chr8_2:17519900-17519919 Msa1237890:intron 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG - chr8_2:17520019-17520038 None:intergenic 20.0%
!! TCAACAAAAGTTAATGTATT+TGG + chr8_2:17520530-17520549 Msa1237890:intron 20.0%
!!! ATATTTTATAGTTAGCAAGA+AGG - chr8_2:17520859-17520878 None:intergenic 20.0%
!! AAGGAAATAATGTTAGAATT+TGG + chr8_2:17521206-17521225 Msa1237890:intron 20.0%
!! AACACTAAAAATAAGTAATG+AGG - chr8_2:17521545-17521564 None:intergenic 20.0%
!! AACACTAAAAATAAGTAATG+AGG - chr8_2:17521545-17521564 None:intergenic 20.0%
!! AAATATAATGAGGATGATAA+TGG - chr8_2:17521941-17521960 None:intergenic 20.0%
!!! TAAATCATTTTGATTTTAGG+TGG - chr8_2:17523390-17523409 None:intergenic 20.0%
!! ACCTAAAATCAAAATGATTT+AGG + chr8_2:17523389-17523408 Msa1237890:intron 20.0%
!! TTAATTCATTCTTCTTGTAT+TGG - chr8_2:17523419-17523438 None:intergenic 20.0%
!! GTTTGTGTTGAAATTATTTA+TGG - chr8_2:17523486-17523505 None:intergenic 20.0%
!!! TTTTTATGATTATTTGTGCA+TGG + chr8_2:17523531-17523550 Msa1237890:intron 20.0%
!! TCTAATTAAAGTGAAATAGA+AGG + chr8_2:17523596-17523615 Msa1237890:intron 20.0%
!! AAAATTATTTGCATACCTAT+AGG - chr8_2:17524006-17524025 None:intergenic 20.0%
!!! TGATAATATAGTTTTGTTCT+GGG + chr8_2:17524491-17524510 Msa1237890:intron 20.0%
!! AAACATAACCTTAGTTTAAT+TGG + chr8_2:17524902-17524921 Msa1237890:intron 20.0%
!! AGTAATTAACCAGTAAATAT+TGG - chr8_2:17524945-17524964 None:intergenic 20.0%
!! AAGAAAAGGAGAATTTAATA+CGG + chr8_2:17525347-17525366 Msa1237890:CDS 20.0%
! CATACAACAAAACAAAAAGA+TGG + chr8_2:17519327-17519346 Msa1237890:CDS 25.0%
! AAAACACACTCAATTGTAAT+TGG + chr8_2:17519573-17519592 Msa1237890:intron 25.0%
! TTTGAACAATTGAGTTATGT+TGG + chr8_2:17519596-17519615 Msa1237890:intron 25.0%
! AATTAATTTCTTGTCCAGTA+GGG + chr8_2:17519631-17519650 Msa1237890:intron 25.0%
! AGTTTACCAAATTTATTCCT+AGG + chr8_2:17519785-17519804 Msa1237890:intron 25.0%
! ATTCTCATCTTTATATTCCA+AGG - chr8_2:17519820-17519839 None:intergenic 25.0%
!! AAGATGAGAATTTTATTCCT+AGG + chr8_2:17519829-17519848 Msa1237890:intron 25.0%
!! CATATTTTTCCTAAATACCT+AGG - chr8_2:17519849-17519868 None:intergenic 25.0%
! GTTAACCTTATAATATTCCA+AGG + chr8_2:17519873-17519892 Msa1237890:intron 25.0%
!! TTTATTCCCATCATTTTCTT+TGG + chr8_2:17519960-17519979 Msa1237890:intron 25.0%
!! TTATTCCCATCATTTTCTTT+GGG + chr8_2:17519961-17519980 Msa1237890:intron 25.0%
!! ATTTTCCCAAAGAAAATGAT+GGG - chr8_2:17519969-17519988 None:intergenic 25.0%
!! AATTTTCCCAAAGAAAATGA+TGG - chr8_2:17519970-17519989 None:intergenic 25.0%
!! GTTTACTAAATTTTATTCCC+GGG - chr8_2:17520018-17520037 None:intergenic 25.0%
! AGTAAACTTGTAACAAACAT+AGG + chr8_2:17520031-17520050 Msa1237890:intron 25.0%
!! GTTTTTATGATTTTATTCCC+AGG + chr8_2:17520061-17520080 Msa1237890:intron 25.0%
! AGTTATAATTGTAGATTCCT+GGG - chr8_2:17520081-17520100 None:intergenic 25.0%
! AAGTTATAATTGTAGATTCC+TGG - chr8_2:17520082-17520101 None:intergenic 25.0%
! TGTATTAAGATTGCTTATAC+TGG + chr8_2:17520127-17520146 Msa1237890:intron 25.0%
! CACACAATAAATCATACAAA+AGG + chr8_2:17520190-17520209 Msa1237890:intron 25.0%
! ATACAAACTTTCCAATAGTT+TGG - chr8_2:17520486-17520505 None:intergenic 25.0%
! ACTTTACATTTCTCTTAAGA+TGG + chr8_2:17520638-17520657 Msa1237890:intron 25.0%
! CATGCAACAAAAAACATATT+TGG + chr8_2:17520694-17520713 Msa1237890:intron 25.0%
! TTCTTGCATGTAAAAAACAT+GGG - chr8_2:17520952-17520971 None:intergenic 25.0%
! ATTCTTGCATGTAAAAAACA+TGG - chr8_2:17520953-17520972 None:intergenic 25.0%
!! AATTTTCATCCTTTAATCGA+CGG - chr8_2:17521164-17521183 None:intergenic 25.0%
! GTACTAAATCTAGAAAAACA+AGG + chr8_2:17521187-17521206 Msa1237890:intron 25.0%
! AAAACATCATGAGGAATAAA+TGG + chr8_2:17521274-17521293 Msa1237890:intron 25.0%
! TAATTGCTATGCATTCTTTA+TGG - chr8_2:17521686-17521705 None:intergenic 25.0%
! TGAAATATGATAGACTTACA+AGG - chr8_2:17521993-17522012 None:intergenic 25.0%
! TCAATATGTCACATACTAAT+GGG - chr8_2:17522185-17522204 None:intergenic 25.0%
! ATCAATATGTCACATACTAA+TGG - chr8_2:17522186-17522205 None:intergenic 25.0%
! ACCAAATTGAAAAAATCTCA+CGG + chr8_2:17522297-17522316 Msa1237890:intron 25.0%
! GTAACCTATATATAGATCAA+AGG + chr8_2:17522456-17522475 Msa1237890:intron 25.0%
! TCAACCTTTGATCTATATAT+AGG - chr8_2:17522463-17522482 None:intergenic 25.0%
!!! TTAGCATTACATTTTGATGT+AGG + chr8_2:17522493-17522512 Msa1237890:intron 25.0%
! TTTCATTGTTGCAATTTAGT+GGG - chr8_2:17522735-17522754 None:intergenic 25.0%
!! GAAAAAACATGTCACATTTT+AGG + chr8_2:17522908-17522927 Msa1237890:CDS 25.0%
! ATGCAAAATCTTATCAAACA+AGG + chr8_2:17522968-17522987 Msa1237890:CDS 25.0%
! TGCAAAATCTTATCAAACAA+GGG + chr8_2:17522969-17522988 Msa1237890:CDS 25.0%
! TGGACAAGAAAAAATTTCAA+GGG + chr8_2:17523091-17523110 Msa1237890:CDS 25.0%
! TCTCCACAATAATGAAAAAT+AGG - chr8_2:17523138-17523157 None:intergenic 25.0%
! ATTGGAATTAAATGTATCAC+TGG + chr8_2:17523227-17523246 Msa1237890:intron 25.0%
!!! GCCTAAATCATTTTGATTTT+AGG - chr8_2:17523393-17523412 None:intergenic 25.0%
!! ATAGAATACCTTATGCATTT+TGG + chr8_2:17523734-17523753 Msa1237890:CDS 25.0%
!!! TTTTCGAGTTCTTTTCTAAT+GGG - chr8_2:17523781-17523800 None:intergenic 25.0%
!! TGAATTTCGTCTTTGAAAAA+TGG - chr8_2:17523901-17523920 None:intergenic 25.0%
! AAAATTCCAAGACACAAAAT+TGG + chr8_2:17523968-17523987 Msa1237890:CDS 25.0%
!! ATGTGTCATGTTTTATGTTA+AGG + chr8_2:17524123-17524142 Msa1237890:intron 25.0%
! GTAAAGAAATCATAGTACTT+AGG - chr8_2:17524233-17524252 None:intergenic 25.0%
! TAGAACATTGAGAAAGAATA+TGG - chr8_2:17524363-17524382 None:intergenic 25.0%
!!! CTGATAATATAGTTTTGTTC+TGG + chr8_2:17524490-17524509 Msa1237890:intron 25.0%
! AATTGAGTCCAATTAAACTA+AGG - chr8_2:17524913-17524932 None:intergenic 25.0%
! TTAAATTCTCTTGCTTACTA+AGG + chr8_2:17524991-17525010 Msa1237890:intron 25.0%
! CAAATTATCTATGATGTACT+TGG - chr8_2:17525089-17525108 None:intergenic 25.0%
! TCATCAATTTCTACAAGAAA+AGG + chr8_2:17525333-17525352 Msa1237890:CDS 25.0%
! TTGATGAAAGCTTTGACTAT+TGG - chr8_2:17519306-17519325 None:intergenic 30.0%
GAATTAATTTCTTGTCCAGT+AGG + chr8_2:17519630-17519649 Msa1237890:intron 30.0%
TTCCTAGGAATAATATTCCT+TGG + chr8_2:17519800-17519819 Msa1237890:intron 30.0%
TTCCAAGGAATATTATTCCT+AGG - chr8_2:17519805-17519824 None:intergenic 30.0%
AGGTTCCTTGGAATATTATA+AGG - chr8_2:17519881-17519900 None:intergenic 30.0%
AATAAAGTTTCCATGGAGAT+GGG - chr8_2:17519946-17519965 None:intergenic 30.0%
TGGTATATATATGTGCACTA+AGG + chr8_2:17520224-17520243 Msa1237890:intron 30.0%
GAACTTGTATGACTTGAATT+TGG + chr8_2:17520271-17520290 Msa1237890:intron 30.0%
AAGTAAGTCAAACATGTAAG+AGG + chr8_2:17520449-17520468 Msa1237890:intron 30.0%
TTGGGAATAAACCAAACTAT+TGG + chr8_2:17520472-17520491 Msa1237890:intron 30.0%
! CCTTTTTACAAGAGACAAAT+TGG - chr8_2:17520592-17520611 None:intergenic 30.0%
CCAATTTGTCTCTTGTAAAA+AGG + chr8_2:17520589-17520608 Msa1237890:intron 30.0%
! ACCGAATGGAGTAATATTTT+GGG + chr8_2:17520612-17520631 Msa1237890:intron 30.0%
!! TTTTTGTAAGAGTCGACTTT+GGG + chr8_2:17520671-17520690 Msa1237890:intron 30.0%
CATTCTTTATGGTGATATCA+CGG - chr8_2:17521675-17521694 None:intergenic 30.0%
CTTAGAATTCTACAAGCTAA+TGG - chr8_2:17521841-17521860 None:intergenic 30.0%
!! CATTAGCTTGTAGAATTCTA+AGG + chr8_2:17521839-17521858 Msa1237890:intron 30.0%
AGCTTGCAACAAATATAATG+AGG - chr8_2:17521951-17521970 None:intergenic 30.0%
GTTATAGATGTTACATGCTT+TGG + chr8_2:17522054-17522073 Msa1237890:intron 30.0%
ACTAGAAACAAAAACAAGCA+TGG - chr8_2:17522080-17522099 None:intergenic 30.0%
AATTATGACAATTGAGGGAA+AGG - chr8_2:17522160-17522179 None:intergenic 30.0%
!!! ACCGTGAGATTTTTTCAATT+TGG - chr8_2:17522301-17522320 None:intergenic 30.0%
AATTGAAAAAATCTCACGGT+CGG + chr8_2:17522301-17522320 Msa1237890:intron 30.0%
! AATAGTAGTGCTTGTTACTT+TGG - chr8_2:17522665-17522684 None:intergenic 30.0%
GTTTCATTGTTGCAATTTAG+TGG - chr8_2:17522736-17522755 None:intergenic 30.0%
CATTGAGATGAAATGTTGTT+GGG - chr8_2:17522786-17522805 None:intergenic 30.0%
TCATTGAGATGAAATGTTGT+TGG - chr8_2:17522787-17522806 None:intergenic 30.0%
CATGTCCAAATTACTTCAAA+TGG + chr8_2:17522824-17522843 Msa1237890:CDS 30.0%
! TGGATCCATTTGAAGTAATT+TGG - chr8_2:17522832-17522851 None:intergenic 30.0%
! GGGGAATTTTACAACTTTTA+AGG + chr8_2:17523007-17523026 Msa1237890:CDS 30.0%
TCAATGTGGTGATAAAAATG+TGG + chr8_2:17523068-17523087 Msa1237890:CDS 30.0%
GTGGACAAGAAAAAATTTCA+AGG + chr8_2:17523090-17523109 Msa1237890:CDS 30.0%
CAATAATGAAAAATAGGTGG+AGG - chr8_2:17523132-17523151 None:intergenic 30.0%
CCACAATAATGAAAAATAGG+TGG - chr8_2:17523135-17523154 None:intergenic 30.0%
!! CCACCTATTTTTCATTATTG+TGG + chr8_2:17523132-17523151 Msa1237890:CDS 30.0%
!! TTGACATTGTTTTTCCTGAT+TGG + chr8_2:17523169-17523188 Msa1237890:CDS 30.0%
AAGCTTCTATTCCCTTTAAT+TGG + chr8_2:17523209-17523228 Msa1237890:intron 30.0%
ACATTACGCAATATACAAGA+AGG + chr8_2:17523688-17523707 Msa1237890:CDS 30.0%
! AATACCTTATGCATTTTGGA+AGG + chr8_2:17523738-17523757 Msa1237890:CDS 30.0%
!! ATACCTTATGCATTTTGGAA+GGG + chr8_2:17523739-17523758 Msa1237890:CDS 30.0%
!!! CTTTTCGAGTTCTTTTCTAA+TGG - chr8_2:17523782-17523801 None:intergenic 30.0%
! GATTTTCCAATTTTGTGTCT+TGG - chr8_2:17523977-17523996 None:intergenic 30.0%
TGGAAAATCAATGTACCTAT+AGG + chr8_2:17523988-17524007 Msa1237890:CDS 30.0%
! AGAATATGGTTACTTTGTCA+AGG - chr8_2:17524349-17524368 None:intergenic 30.0%
TTGTTCCACAATAACCAATT+TGG + chr8_2:17524627-17524646 Msa1237890:intron 30.0%
TGTTCCACAATAACCAATTT+GGG + chr8_2:17524628-17524647 Msa1237890:intron 30.0%
TATGAACAGACTAATATGAG+TGG - chr8_2:17524805-17524824 None:intergenic 30.0%
AAGGTTATGTTTGTGTATGT+AGG - chr8_2:17524894-17524913 None:intergenic 30.0%
ACATTCTAGCCAATATTTAC+TGG + chr8_2:17524933-17524952 Msa1237890:intron 30.0%
TTACTAAGGAAAACAACACT+TGG + chr8_2:17525005-17525024 Msa1237890:intron 30.0%
CCTGCAGTTAATAATATTGT+TGG - chr8_2:17525042-17525061 None:intergenic 30.0%
CCAACAATATTATTAACTGC+AGG + chr8_2:17525039-17525058 Msa1237890:intron 30.0%
TTCAAACCAAAAATACCTGA+AGG + chr8_2:17525172-17525191 Msa1237890:CDS 30.0%
!! TGAAGAGTTTGAGTTGTATA+AGG - chr8_2:17525316-17525335 None:intergenic 30.0%
CAAGAAGAAGAAGGAGAATA+AGG - chr8_2:17519366-17519385 None:intergenic 35.0%
TAAGCACTTTCATCATCCAT+TGG + chr8_2:17519399-17519418 Msa1237890:CDS 35.0%
GAGATAGCATATGACTTACA+AGG - chr8_2:17519430-17519449 None:intergenic 35.0%
TTCCAAGGAACCTTAAAACT+AGG + chr8_2:17519888-17519907 Msa1237890:intron 35.0%
TCCAAGGAACCTTAAAACTA+GGG + chr8_2:17519889-17519908 Msa1237890:intron 35.0%
! TGATTTTATTCCCATCTCCA+TGG + chr8_2:17519933-17519952 Msa1237890:intron 35.0%
GAATAAAGTTTCCATGGAGA+TGG - chr8_2:17519947-17519966 None:intergenic 35.0%
TGATGGGAATAAAGTTTCCA+TGG - chr8_2:17519953-17519972 None:intergenic 35.0%
! GGGAAAATTTTTCTATTCCC+AGG + chr8_2:17519981-17520000 Msa1237890:intron 35.0%
AAGTCAAACATGTAAGAGGT+TGG + chr8_2:17520453-17520472 Msa1237890:intron 35.0%
AGTCAAACATGTAAGAGGTT+GGG + chr8_2:17520454-17520473 Msa1237890:intron 35.0%
! GACCGAATGGAGTAATATTT+TGG + chr8_2:17520611-17520630 Msa1237890:intron 35.0%
CCCCAAAATATTACTCCATT+CGG - chr8_2:17520616-17520635 None:intergenic 35.0%
! CCGAATGGAGTAATATTTTG+GGG + chr8_2:17520613-17520632 Msa1237890:intron 35.0%
!! GTTTTTGTAAGAGTCGACTT+TGG + chr8_2:17520670-17520689 Msa1237890:intron 35.0%
TGTGTTCATCTCAAAGTCTT+AGG + chr8_2:17520788-17520807 Msa1237890:intron 35.0%
AAAGTCTTAGGTTAGTGACT+CGG + chr8_2:17520800-17520819 Msa1237890:intron 35.0%
! ATAGACATGTGCTCCTTTTT+AGG - chr8_2:17521121-17521140 None:intergenic 35.0%
! TAAAAAGGAGCACATGTCTA+TGG + chr8_2:17521120-17521139 Msa1237890:intron 35.0%
CATCATGAGGAATAAATGGT+TGG + chr8_2:17521278-17521297 Msa1237890:intron 35.0%
TGCATAGCAATTAGTACCAT+TGG + chr8_2:17521693-17521712 Msa1237890:intron 35.0%
GCATAGCAATTAGTACCATT+GGG + chr8_2:17521694-17521713 Msa1237890:intron 35.0%
CATAGCAATTAGTACCATTG+GGG + chr8_2:17521695-17521714 Msa1237890:intron 35.0%
AAACAGTTGCATCATGCAAT+TGG + chr8_2:17521811-17521830 Msa1237890:intron 35.0%
CAGTGAATTGAATATGCGAA+AGG - chr8_2:17521869-17521888 None:intergenic 35.0%
TTCGCATATTCAATTCACTG+AGG + chr8_2:17521869-17521888 Msa1237890:intron 35.0%
TGTTGAACATAATGACGAGA+TGG + chr8_2:17521905-17521924 Msa1237890:intron 35.0%
!! AATGAGGATGATAATGGAGA+AGG - chr8_2:17521935-17521954 None:intergenic 35.0%
GGGAGAATTATGACAATTGA+GGG - chr8_2:17522165-17522184 None:intergenic 35.0%
TGGGAGAATTATGACAATTG+AGG - chr8_2:17522166-17522185 None:intergenic 35.0%
TGACATATTGATGAAGAGAG+TGG + chr8_2:17522194-17522213 Msa1237890:intron 35.0%
TCTTTAGTTACATTTCGTCG+TGG + chr8_2:17522412-17522431 Msa1237890:intron 35.0%
GTTGCGACTGTTAATTAGTA+TGG + chr8_2:17522434-17522453 Msa1237890:intron 35.0%
TTGCAATTTAGTGGGAATTG+AGG - chr8_2:17522727-17522746 None:intergenic 35.0%
TAATTTGGACATGATGAGGA+TGG - chr8_2:17522817-17522836 None:intergenic 35.0%
GAAGTAATTTGGACATGATG+AGG - chr8_2:17522821-17522840 None:intergenic 35.0%
TCCATGAAGATCTTAAACCA+TGG + chr8_2:17522848-17522867 Msa1237890:CDS 35.0%
CCATGAAGATCTTAAACCAT+GGG + chr8_2:17522849-17522868 Msa1237890:CDS 35.0%
TACAGGAATCACAAGAGAAA+TGG + chr8_2:17522876-17522895 Msa1237890:CDS 35.0%
ACAAGAGAAATGGTTGAAAG+AGG + chr8_2:17522886-17522905 Msa1237890:CDS 35.0%
AAGGGATGTGTTCACAATAT+GGG + chr8_2:17522987-17523006 Msa1237890:CDS 35.0%
! CCAAATCAGGTATTTTTCCA+GGG - chr8_2:17523038-17523057 None:intergenic 35.0%
! TCCAAATCAGGTATTTTTCC+AGG - chr8_2:17523039-17523058 None:intergenic 35.0%
TGAAACATTAGCTCCAAATC+AGG - chr8_2:17523051-17523070 None:intergenic 35.0%
TTGGAGCTAATGTTTCAATG+TGG + chr8_2:17523054-17523073 Msa1237890:CDS 35.0%
ATGTGGTGATAAAAATGTGG+TGG + chr8_2:17523071-17523090 Msa1237890:CDS 35.0%
! AGAAGCAGTTAAGATTTGCT+TGG + chr8_2:17523361-17523380 Msa1237890:intron 35.0%
AAGGCAACAAGAATGTCAAA+TGG + chr8_2:17523707-17523726 Msa1237890:CDS 35.0%
CAACAAGAATGTCAAATGGA+AGG + chr8_2:17523711-17523730 Msa1237890:CDS 35.0%
TTTCCCTTCCAAAATGCATA+AGG - chr8_2:17523745-17523764 None:intergenic 35.0%
AGCATTCCAATCATGTTCTT+CGG - chr8_2:17523815-17523834 None:intergenic 35.0%
! TTTTTGCTCCTTTTCAGCAA+TGG + chr8_2:17523928-17523947 Msa1237890:intron 35.0%
AGGTACAAGATTTATGCAGA+AGG + chr8_2:17524143-17524162 Msa1237890:intron 35.0%
GGTACAAGATTTATGCAGAA+GGG + chr8_2:17524144-17524163 Msa1237890:intron 35.0%
GTACAAGATTTATGCAGAAG+GGG + chr8_2:17524145-17524164 Msa1237890:CDS 35.0%
!! TGAAGAGATTAAGTTTGCTG+TGG + chr8_2:17524307-17524326 Msa1237890:CDS 35.0%
!! AGATTAAGTTTGCTGTGGAT+TGG + chr8_2:17524312-17524331 Msa1237890:CDS 35.0%
!! GATTAAGTTTGCTGTGGATT+GGG + chr8_2:17524313-17524332 Msa1237890:CDS 35.0%
!! ATTAAGTTTGCTGTGGATTG+GGG + chr8_2:17524314-17524333 Msa1237890:CDS 35.0%
! GTCTCAAAATCGATTCTCTT+CGG + chr8_2:17524558-17524577 Msa1237890:intron 35.0%
CTAAATTAGCCCACCTAAAT+TGG - chr8_2:17524586-17524605 None:intergenic 35.0%
GTTCCACAATAACCAATTTG+GGG + chr8_2:17524629-17524648 Msa1237890:intron 35.0%
ACTACTGAAATTGACACTAG+GGG - chr8_2:17524717-17524736 None:intergenic 35.0%
GACTACTGAAATTGACACTA+GGG - chr8_2:17524718-17524737 None:intergenic 35.0%
TGACTACTGAAATTGACACT+AGG - chr8_2:17524719-17524738 None:intergenic 35.0%
! TGCATGGTTCAACTTCATTT+TGG - chr8_2:17524864-17524883 None:intergenic 35.0%
TAACTGCAGGCACAAAAAAT+TGG + chr8_2:17525052-17525071 Msa1237890:intron 35.0%
AAGGAAACATTTCATGGTTG+AGG + chr8_2:17525243-17525262 Msa1237890:CDS 35.0%
AGGAAACATTTCATGGTTGA+GGG + chr8_2:17525244-17525263 Msa1237890:CDS 35.0%
!! GTTTGAGTTGTATAAGGAGA+AGG - chr8_2:17525310-17525329 None:intergenic 35.0%
GACTTACAAGGTCAATCCAA+TGG - chr8_2:17519418-17519437 None:intergenic 40.0%
!!! TCCCTAGTTTTAAGGTTCCT+TGG - chr8_2:17519893-17519912 None:intergenic 40.0%
! TCCCAGGAACATTTTATACC+CGG + chr8_2:17519997-17520016 Msa1237890:intron 40.0%
ATATGTGCACTAAGGTCACT+TGG + chr8_2:17520232-17520251 Msa1237890:intron 40.0%
CTCTTGTAAAAAGGACCGAA+TGG + chr8_2:17520598-17520617 Msa1237890:intron 40.0%
CATCATCAGACTAACTTACG+TGG - chr8_2:17520749-17520768 None:intergenic 40.0%
GACAGTCACGCTATTATTGT+AGG - chr8_2:17520930-17520949 None:intergenic 40.0%
GTTGGAAATTGGAGCTATGA+TGG + chr8_2:17521062-17521081 Msa1237890:intron 40.0%
GACGAATGGGTAAAACACTA+CGG + chr8_2:17521088-17521107 Msa1237890:intron 40.0%
!! AGAATTTGGTGTTGCAGCAA+TGG + chr8_2:17521220-17521239 Msa1237890:intron 40.0%
GTGTAGAGGAAAACATCATG+AGG + chr8_2:17521265-17521284 Msa1237890:intron 40.0%
TCTTTATGGTGATATCACGG+AGG - chr8_2:17521672-17521691 None:intergenic 40.0%
CAATTAGTACCATTGGGGTT+AGG + chr8_2:17521700-17521719 Msa1237890:intron 40.0%
CACTATTATCCTAACCCCAA+TGG - chr8_2:17521712-17521731 None:intergenic 40.0%
TGTTGCAAGCTCTTTCATCT+TGG + chr8_2:17521960-17521979 Msa1237890:intron 40.0%
TGACAATTGAGGGAAAGGAA+AGG - chr8_2:17522155-17522174 None:intergenic 40.0%
CATATTGATGAAGAGAGTGG+AGG + chr8_2:17522197-17522216 Msa1237890:intron 40.0%
TAATATTGGGGCAATCTGAG+AGG + chr8_2:17522263-17522282 Msa1237890:intron 40.0%
AATATTGGGGCAATCTGAGA+GGG + chr8_2:17522264-17522283 Msa1237890:intron 40.0%
AACCTCTTGTCTCTATCTCA+GGG - chr8_2:17522349-17522368 None:intergenic 40.0%
! AGATGGACAAGTTGAGTTTG+AGG - chr8_2:17522758-17522777 None:intergenic 40.0%
AATGTTGTTGGGTAGGAAGA+TGG - chr8_2:17522775-17522794 None:intergenic 40.0%
GAGATGAAATGTTGTTGGGT+AGG - chr8_2:17522782-17522801 None:intergenic 40.0%
! CCCATGGTTTAAGATCTTCA+TGG - chr8_2:17522852-17522871 None:intergenic 40.0%
CTTAAACCATGGGAGAATAC+AGG + chr8_2:17522859-17522878 Msa1237890:CDS 40.0%
! CATGTCACATTTTAGGCTTG+TGG + chr8_2:17522915-17522934 Msa1237890:CDS 40.0%
! ACATTTTAGGCTTGTGGTTG+TGG + chr8_2:17522921-17522940 Msa1237890:CDS 40.0%
CAAGGGATGTGTTCACAATA+TGG + chr8_2:17522986-17523005 Msa1237890:CDS 40.0%
AGGGATGTGTTCACAATATG+GGG + chr8_2:17522988-17523007 Msa1237890:CDS 40.0%
!!! CAACTTTTAAGGTTGTACCC+TGG + chr8_2:17523018-17523037 Msa1237890:CDS 40.0%
CCCTGGAAAAATACCTGATT+TGG + chr8_2:17523035-17523054 Msa1237890:CDS 40.0%
! TTTTTCCTGATTGGACCTTC+TGG + chr8_2:17523178-17523197 Msa1237890:CDS 40.0%
! TTTTCCTGATTGGACCTTCT+GGG + chr8_2:17523179-17523198 Msa1237890:CDS 40.0%
!! TTGTTTCCCATGGTCTTATG+TGG - chr8_2:17523669-17523688 None:intergenic 40.0%
!! TTGCGTAATGTTGTTTCCCA+TGG - chr8_2:17523679-17523698 None:intergenic 40.0%
TTTCTAATGGGAGATACTGC+TGG - chr8_2:17523769-17523788 None:intergenic 40.0%
ATGCATCCGAAGAACATGAT+TGG + chr8_2:17523806-17523825 Msa1237890:CDS 40.0%
TTACTCGAAACAAAAGCGAG+AGG - chr8_2:17523872-17523891 None:intergenic 40.0%
AGGCTCTATGAACATAGTCA+TGG - chr8_2:17524213-17524232 None:intergenic 40.0%
!!! ATAGTTTTGTTCTGGGAGTG+TGG + chr8_2:17524498-17524517 Msa1237890:intron 40.0%
!!! GAATCGATTTTGAGACCTCA+AGG - chr8_2:17524554-17524573 None:intergenic 40.0%
!! ATTCTCTTCGGTGCCAATTT+AGG + chr8_2:17524570-17524589 Msa1237890:intron 40.0%
CAACCCCAAATTGGTTATTG+TGG - chr8_2:17524635-17524654 None:intergenic 40.0%
AAGATCTCAAACCAACCACT+AGG - chr8_2:17524659-17524678 None:intergenic 40.0%
!! TAGTGGTTGGTTTGAGATCT+TGG + chr8_2:17524658-17524677 Msa1237890:intron 40.0%
CTACTGAAATTGACACTAGG+GGG - chr8_2:17524716-17524735 None:intergenic 40.0%
GTATGTAGGAACAAAGTGCA+TGG - chr8_2:17524880-17524899 None:intergenic 40.0%
CAGGCACAAAAAATTGGAGA+AGG + chr8_2:17525058-17525077 Msa1237890:intron 40.0%
GCACAAAAAATTGGAGAAGG+AGG + chr8_2:17525061-17525080 Msa1237890:CDS 40.0%
ACCAAAAATACCTGAAGGAG+CGG + chr8_2:17525177-17525196 Msa1237890:CDS 40.0%
TGAGGTTTGTCCTGAAAGTA+TGG + chr8_2:17525201-17525220 Msa1237890:CDS 40.0%
AAGGAACATGCCATACTTTC+AGG - chr8_2:17525214-17525233 None:intergenic 40.0%
TGGTGCAAGGAAACATTTCA+TGG + chr8_2:17525237-17525256 Msa1237890:CDS 40.0%
TAATACGGCAAGTGAAGACA+AGG + chr8_2:17525362-17525381 Msa1237890:CDS 40.0%
AATACGGCAAGTGAAGACAA+GGG + chr8_2:17525363-17525382 Msa1237890:CDS 40.0%
CCCGGGTATAAAATGTTCCT+GGG - chr8_2:17520001-17520020 None:intergenic 45.0%
! CCCAGGAACATTTTATACCC+GGG + chr8_2:17519998-17520017 Msa1237890:intron 45.0%
TCCCGGGTATAAAATGTTCC+TGG - chr8_2:17520002-17520021 None:intergenic 45.0%
! CATGTCTATGGTGTTAGTCG+CGG + chr8_2:17521132-17521151 Msa1237890:intron 45.0%
GCAAAGCAGTAGATGTGTAG+AGG + chr8_2:17521251-17521270 Msa1237890:intron 45.0%
AAAAAATCTCACGGTCGGTG+AGG + chr8_2:17522306-17522325 Msa1237890:intron 45.0%
AAAAATCTCACGGTCGGTGA+GGG + chr8_2:17522307-17522326 Msa1237890:intron 45.0%
GAACCTCTTGTCTCTATCTC+AGG - chr8_2:17522350-17522369 None:intergenic 45.0%
GTGATTCCTGTATTCTCCCA+TGG - chr8_2:17522868-17522887 None:intergenic 45.0%
TTTAGGCTTGTGGTTGTGGA+TGG + chr8_2:17522925-17522944 Msa1237890:CDS 45.0%
TTTCCTGATTGGACCTTCTG+GGG + chr8_2:17523180-17523199 Msa1237890:CDS 45.0%
TGAGCTCCACATAAGACCAT+GGG + chr8_2:17523660-17523679 Msa1237890:CDS 45.0%
! TCCTTTTCAGCAATGGCAAC+AGG + chr8_2:17523935-17523954 Msa1237890:intron 45.0%
TCCTGTTGCCATTGCTGAAA+AGG - chr8_2:17523939-17523958 None:intergenic 45.0%
TTTATGCAGAAGGGGCAACA+TGG + chr8_2:17524153-17524172 Msa1237890:CDS 45.0%
TGCTACCTTTGCAGCACTAT+TGG + chr8_2:17524261-17524280 Msa1237890:CDS 45.0%
ATAGGCCAATAGTGCTGCAA+AGG - chr8_2:17524269-17524288 None:intergenic 45.0%
!! TTGTTCTGGGAGTGTGGTAT+TGG + chr8_2:17524504-17524523 Msa1237890:intron 45.0%
!! TCTTCGGTGCCAATTTAGGT+GGG + chr8_2:17524574-17524593 Msa1237890:intron 45.0%
! CTTGGAGTTTGCTTCTCTCA+AGG + chr8_2:17524676-17524695 Msa1237890:intron 45.0%
TTTAATGGGGCTCCTACAAG+TGG + chr8_2:17524765-17524784 Msa1237890:intron 45.0%
TTAATGGGGCTCCTACAAGT+GGG + chr8_2:17524766-17524785 Msa1237890:intron 45.0%
! ACCGCTCCTTCAGGTATTTT+TGG - chr8_2:17525181-17525200 None:intergenic 45.0%
ACATTTCATGGTTGAGGGCA+TGG + chr8_2:17525249-17525268 Msa1237890:CDS 45.0%
!! TAAGGAGAAGGCATTGTGCA+TGG - chr8_2:17525298-17525317 None:intergenic 45.0%
!!! TGAATTAATTTATTTATTTT+AGG - chr8_2:17520388-17520407 None:intergenic 5.0%
!!! ATATTTTTATAAGAAATAAA+TGG + chr8_2:17520506-17520525 Msa1237890:intron 5.0%
!!! TATTTTTATAAGAAATAAAT+GGG + chr8_2:17520507-17520526 Msa1237890:intron 5.0%
!!! ATTATAGTTTTTTTTTTTTT+TGG - chr8_2:17523329-17523348 None:intergenic 5.0%
! AGCTATGATGGCGAGACGAA+TGG + chr8_2:17521074-17521093 Msa1237890:intron 50.0%
! GCTATGATGGCGAGACGAAT+GGG + chr8_2:17521075-17521094 Msa1237890:intron 50.0%
GGGTAAAACACTACGGCGAT+CGG + chr8_2:17521095-17521114 Msa1237890:intron 50.0%
AAAATCTCACGGTCGGTGAG+GGG + chr8_2:17522308-17522327 Msa1237890:intron 50.0%
AGCCCTGAGATAGAGACAAG+AGG + chr8_2:17522344-17522363 Msa1237890:intron 50.0%
! GGTGGAGGTGACACATTTTC+TGG - chr8_2:17523117-17523136 None:intergenic 50.0%
GAAGCTTTACCAACCCCAGA+AGG - chr8_2:17523196-17523215 None:intergenic 50.0%
CTGAGCTCCACATAAGACCA+TGG + chr8_2:17523659-17523678 Msa1237890:CDS 50.0%
! TGAGAGTGTGCTCTTCCTTG+AGG + chr8_2:17524536-17524555 Msa1237890:intron 50.0%
!! CTCTTCGGTGCCAATTTAGG+TGG + chr8_2:17524573-17524592 Msa1237890:intron 50.0%
CCACTAGGTCAACCCCAAAT+TGG - chr8_2:17524644-17524663 None:intergenic 50.0%
! CCAATTTGGGGTTGACCTAG+TGG + chr8_2:17524641-17524660 Msa1237890:intron 50.0%
! TTTGGGGTTGACCTAGTGGT+TGG + chr8_2:17524645-17524664 Msa1237890:intron 50.0%
!!! AGCCCTGCTCTGGCTTTTAA+TGG + chr8_2:17524750-17524769 Msa1237890:intron 50.0%
!!! GCCCTGCTCTGGCTTTTAAT+GGG + chr8_2:17524751-17524770 Msa1237890:intron 50.0%
CCCCATTAAAAGCCAGAGCA+GGG - chr8_2:17524755-17524774 None:intergenic 50.0%
!!! CCCTGCTCTGGCTTTTAATG+GGG + chr8_2:17524752-17524771 Msa1237890:intron 50.0%
AATACCTGAAGGAGCGGTTG+AGG + chr8_2:17525183-17525202 Msa1237890:CDS 50.0%
AGTATGGCATGTTCCTTGCG+TGG + chr8_2:17525217-17525236 Msa1237890:CDS 50.0%
ATGTTTCCTTGCACCACGCA+AGG - chr8_2:17525233-17525252 None:intergenic 50.0%
! GTGCATGGAGGTGTATCACT+TGG - chr8_2:17525283-17525302 None:intergenic 50.0%
CTACGGCGATCGGCCTAAAA+AGG + chr8_2:17521105-17521124 Msa1237890:intron 55.0%
! TATGGTGTTAGTCGCGGCGT+TGG + chr8_2:17521138-17521157 Msa1237890:intron 55.0%
CAACCCCAGAAGGTCCAATC+AGG - chr8_2:17523186-17523205 None:intergenic 55.0%
!! CTGATTGGACCTTCTGGGGT+TGG + chr8_2:17523184-17523203 Msa1237890:CDS 55.0%
GCCCCATTAAAAGCCAGAGC+AGG - chr8_2:17524756-17524775 None:intergenic 55.0%
CAAACCTCAACCGCTCCTTC+AGG - chr8_2:17525190-17525209 None:intergenic 55.0%
CATGTTCCTTGCGTGGTGCA+AGG + chr8_2:17525224-17525243 Msa1237890:CDS 55.0%
!! GGAGAAGGCATTGTGCATGG+AGG - chr8_2:17525295-17525314 None:intergenic 55.0%
!! CGGCGTTGGCCGTCGATTAA+AGG + chr8_2:17521152-17521171 Msa1237890:intron 60.0%
GTCCATACAGAGCCCTGCTC+TGG + chr8_2:17524740-17524759 Msa1237890:intron 60.0%
AGCCAGAGCAGGGCTCTGTA+TGG - chr8_2:17524745-17524764 None:intergenic 60.0%
ATGGGGCTCCTACAAGTGGG+CGG + chr8_2:17524769-17524788 Msa1237890:intron 60.0%
CAATCCCACCGCCCACTTGT+AGG - chr8_2:17524780-17524799 None:intergenic 60.0%
CTACAAGTGGGCGGTGGGAT+TGG + chr8_2:17524778-17524797 Msa1237890:intron 60.0%
ATCTCACGGTCGGTGAGGGG+TGG + chr8_2:17522311-17522330 Msa1237890:intron 65.0%
TCTCACGGTCGGTGAGGGGT+GGG + chr8_2:17522312-17522331 Msa1237890:intron 65.0%
GGCTCCTACAAGTGGGCGGT+GGG + chr8_2:17524773-17524792 Msa1237890:intron 65.0%
CTCACGGTCGGTGAGGGGTG+GGG + chr8_2:17522313-17522332 Msa1237890:intron 70.0%
GGGCTCCTACAAGTGGGCGG+TGG + chr8_2:17524772-17524791 Msa1237890:intron 70.0%
GGTCGGTGAGGGGTGGGGAC+TGG + chr8_2:17522318-17522337 Msa1237890:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 17519299 17525405 17519299 ID=Msa1237890;Name=Msa1237890
chr8_2 mRNA 17519299 17525405 17519299 ID=Msa1237890-mRNA-1;Parent=Msa1237890;Name=Msa1237890-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|0.8|0.83|6|0|496
chr8_2 exon 17519299 17519430 17519299 ID=Msa1237890-mRNA-1:exon:6671;Parent=Msa1237890-mRNA-1
chr8_2 exon 17522661 17523205 17522661 ID=Msa1237890-mRNA-1:exon:6672;Parent=Msa1237890-mRNA-1
chr8_2 exon 17523657 17523849 17523657 ID=Msa1237890-mRNA-1:exon:6673;Parent=Msa1237890-mRNA-1
chr8_2 exon 17523945 17524009 17523945 ID=Msa1237890-mRNA-1:exon:6674;Parent=Msa1237890-mRNA-1
chr8_2 exon 17524145 17524355 17524145 ID=Msa1237890-mRNA-1:exon:6675;Parent=Msa1237890-mRNA-1
chr8_2 exon 17525061 17525405 17525061 ID=Msa1237890-mRNA-1:exon:6676;Parent=Msa1237890-mRNA-1
chr8_2 CDS 17519299 17519430 17519299 ID=Msa1237890-mRNA-1:cds;Parent=Msa1237890-mRNA-1
chr8_2 CDS 17522661 17523205 17522661 ID=Msa1237890-mRNA-1:cds;Parent=Msa1237890-mRNA-1
chr8_2 CDS 17523657 17523849 17523657 ID=Msa1237890-mRNA-1:cds;Parent=Msa1237890-mRNA-1
chr8_2 CDS 17523945 17524009 17523945 ID=Msa1237890-mRNA-1:cds;Parent=Msa1237890-mRNA-1
chr8_2 CDS 17524145 17524355 17524145 ID=Msa1237890-mRNA-1:cds;Parent=Msa1237890-mRNA-1
chr8_2 CDS 17525061 17525405 17525061 ID=Msa1237890-mRNA-1:cds;Parent=Msa1237890-mRNA-1
Gene Sequence

>Msa1237890

ATGGCCAATAGTCAAAGCTTTCATCAAGCATACAACAAAACAAAAAGATGGGTTTCAACTTCAGCCTTATTCTCCTTCTTCTTCTTGTTTTTATTTGCTATAAGCACTTTCATCATCCATTGGATTGACCTTTCCAAAGTAACAAGCACTACTATTTTCAAGACAATAGAAGTCTTCAACAACATTAAACAACAACCTCAATTCCCACTAAATTGCAACAATGAAACCTCAAACTCAACTTGTCCATCTTCCTACCCAACAACATTTCATCTCAATGATGATTCACCATCCTCATCATGTCCAAATTACTTCAAATGGATCCATGAAGATCTTAAACCATGGGAGAATACAGGAATCACAAGAGAAATGGTTGAAAGAGGAAAAAACATGTCACATTTTAGGCTTGTGGTTGTGGATGGAAAAGCATATATAGATAAATATGCAAAATCTTATCAAACAAGGGATGTGTTCACAATATGGGGAATTTTACAACTTTTAAGGTTGTACCCTGGAAAAATACCTGATTTGGAGCTAATGTTTCAATGTGGTGATAAAAATGTGGTGGACAAGAAAAAATTTCAAGGGCCAGAAAATGTGTCACCTCCACCTATTTTTCATTATTGTGGAGATGAAGATACACTTGACATTGTTTTTCCTGATTGGACCTTCTGGGGTTGGGCTGAGCTCCACATAAGACCATGGGAAACAACATTACGCAATATACAAGAAGGCAACAAGAATGTCAAATGGAAGGATAGAATACCTTATGCATTTTGGAAGGGAAATCCAGCAGTATCTCCCATTAGAAAAGAACTCGAAAAGTGTAATGCATCCGAAGAACATGATTGGAATGCTCGAATATATGACATCCAATGGCAACAGGAGAGATCAAAAAAATTCCAAGACACAAAATTGGAAAATCAATGTACCTATAGGTACAAGATTTATGCAGAAGGGGCAACATGGTCTGTGAGTGAAAAGTACATAATAGCATGTGACTCCATGACTATGTTCATAGAGCCTAAGTACTATGATTTCTTTACAAGAAACTTGCTACCTTTGCAGCACTATTGGCCTATCAGTGCCAAAAACATGTGTGAAGAGATTAAGTTTGCTGTGGATTGGGGCAATGCTCACCTTGACAAAGCACAAAAAATTGGAGAAGGAGGAACCAAGTACATCATAGATAATTTGAATATGAAGTTTGTTTATGATTACATGTTTCATCTATTAAATAGTTATGCTAAGCTTTTGAGATTCAAACCAAAAATACCTGAAGGAGCGGTTGAGGTTTGTCCTGAAAGTATGGCATGTTCCTTGCGTGGTGCAAGGAAACATTTCATGGTTGAGGGCATGGTGATGTCACCAAGTGATACACCTCCATGCACAATGCCTTCTCCTTATACAACTCAAACTCTTCATCAATTTCTACAAGAAAAGGAGAATTTAATACGGCAAGTGAAGACAAGGGCCATGAATAAAGAGTTATAG

Protein sequence

>Msa1237890

MANSQSFHQAYNKTKRWVSTSALFSFFFLFLFAISTFIIHWIDLSKVTSTTIFKTIEVFNNIKQQPQFPLNCNNETSNSTCPSSYPTTFHLNDDSPSSSCPNYFKWIHEDLKPWENTGITREMVERGKNMSHFRLVVVDGKAYIDKYAKSYQTRDVFTIWGILQLLRLYPGKIPDLELMFQCGDKNVVDKKKFQGPENVSPPPIFHYCGDEDTLDIVFPDWTFWGWAELHIRPWETTLRNIQEGNKNVKWKDRIPYAFWKGNPAVSPIRKELEKCNASEEHDWNARIYDIQWQQERSKKFQDTKLENQCTYRYKIYAEGATWSVSEKYIIACDSMTMFIEPKYYDFFTRNLLPLQHYWPISAKNMCEEIKFAVDWGNAHLDKAQKIGEGGTKYIIDNLNMKFVYDYMFHLLNSYAKLLRFKPKIPEGAVEVCPESMACSLRGARKHFMVEGMVMSPSDTPPCTMPSPYTTQTLHQFLQEKENLIRQVKTRAMNKEL*