Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275800 | XP_003627170.1 | 83.224 | 304 | 33 | 4 | 1 | 304 | 1 | 286 | 8.31e-169 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275800 | sp|F4IEY4|TRB5_ARATH | 42.532 | 308 | 146 | 9 | 1 | 301 | 1 | 284 | 4.49e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275800 | G7LI96 | 83.224 | 304 | 33 | 4 | 1 | 304 | 1 | 286 | 3.97e-169 | 479 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1275800 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006000 | Msa1275800 | 0.825585 | 4.326158e-54 | -8.615850e-47 |
| Msa0017510 | Msa1275800 | 0.819258 | 1.276298e-52 | -8.615850e-47 |
| Msa0094120 | Msa1275800 | 0.803760 | 2.989677e-49 | -8.615850e-47 |
| Msa0110970 | Msa1275800 | 0.817770 | 2.775977e-52 | -8.615850e-47 |
| Msa0650020 | Msa1275800 | 0.804394 | 2.205992e-49 | -8.615850e-47 |
| Msa0661190 | Msa1275800 | -0.818963 | 1.489641e-52 | -8.615850e-47 |
| Msa0669320 | Msa1275800 | 0.800955 | 1.130715e-48 | -8.615850e-47 |
| Msa0743720 | Msa1275800 | 0.819632 | 1.049079e-52 | -8.615850e-47 |
| Msa0813740 | Msa1275800 | 0.819317 | 1.237679e-52 | -8.615850e-47 |
| Msa0824680 | Msa1275800 | 0.801065 | 1.073623e-48 | -8.615850e-47 |
| Msa0127050 | Msa1275800 | 0.802110 | 6.555255e-49 | -8.615850e-47 |
| Msa0136070 | Msa1275800 | 0.811027 | 8.596952e-51 | -8.615850e-47 |
| Msa0157290 | Msa1275800 | 0.819166 | 1.339767e-52 | -8.615850e-47 |
| Msa0193120 | Msa1275800 | 0.853356 | 2.522419e-61 | -8.615850e-47 |
| Msa0202750 | Msa1275800 | 0.805052 | 1.607970e-49 | -8.615850e-47 |
| Msa0212310 | Msa1275800 | 0.802909 | 4.485199e-49 | -8.615850e-47 |
| Msa0225740 | Msa1275800 | 0.805240 | 1.469009e-49 | -8.615850e-47 |
| Msa1238930 | Msa1275800 | 0.802301 | 5.986819e-49 | -8.615850e-47 |
| Msa1242240 | Msa1275800 | 0.811336 | 7.366866e-51 | -8.615850e-47 |
| Msa1244250 | Msa1275800 | 0.806623 | 7.519761e-50 | -8.615850e-47 |
| Msa1264020 | Msa1275800 | 0.809833 | 1.556060e-50 | -8.615850e-47 |
| Msa1275800 | Msa1312560 | 0.807183 | 5.725111e-50 | -8.615850e-47 |
| Msa1275800 | Msa1367080 | 0.804310 | 2.297367e-49 | -8.615850e-47 |
| Msa1275800 | Msa1411070 | 0.812413 | 4.292511e-51 | -8.615850e-47 |
| Msa1275800 | Msa1415640 | 0.807250 | 5.539193e-50 | -8.615850e-47 |
| Msa1275800 | Msa1429150 | 0.817454 | 3.269893e-52 | -8.615850e-47 |
| Msa0424920 | Msa1275800 | 0.810573 | 1.077605e-50 | -8.615850e-47 |
| Msa0425010 | Msa1275800 | 0.819978 | 8.740986e-53 | -8.615850e-47 |
| Msa0480000 | Msa1275800 | 0.800886 | 1.167760e-48 | -8.615850e-47 |
| Msa0981060 | Msa1275800 | 0.817214 | 3.703039e-52 | -8.615850e-47 |
| Msa0993290 | Msa1275800 | 0.811105 | 8.268767e-51 | -8.615850e-47 |
| Msa0993600 | Msa1275800 | 0.811556 | 6.600311e-51 | -8.615850e-47 |
| Msa1019640 | Msa1275800 | 0.800616 | 1.325420e-48 | -8.615850e-47 |
| Msa1104370 | Msa1275800 | 0.804044 | 2.608807e-49 | -8.615850e-47 |
| Msa0241640 | Msa1275800 | 0.811652 | 6.289962e-51 | -8.615850e-47 |
| Msa0260680 | Msa1275800 | 0.803986 | 2.682762e-49 | -8.615850e-47 |
| Msa0272690 | Msa1275800 | 0.809517 | 1.819463e-50 | -8.615850e-47 |
| Msa0279790 | Msa1275800 | 0.820704 | 5.960200e-53 | -8.615850e-47 |
| Msa0298700 | Msa1275800 | 0.800136 | 1.660696e-48 | -8.615850e-47 |
| Msa0308580 | Msa1275800 | 0.800222 | 1.594643e-48 | -8.615850e-47 |
| Msa0320100 | Msa1275800 | 0.822421 | 2.390894e-53 | -8.615850e-47 |
| Msa0337620 | Msa1275800 | 0.801639 | 8.187328e-49 | -8.615850e-47 |
| Msa1128710 | Msa1275800 | 0.804435 | 2.162946e-49 | -8.615850e-47 |
| Msa1199220 | Msa1275800 | 0.808656 | 2.782926e-50 | -8.615850e-47 |
| Msa1222970 | Msa1275800 | 0.810851 | 9.383702e-51 | -8.615850e-47 |
| Msa0516320 | Msa1275800 | 0.816865 | 4.436747e-52 | -8.615850e-47 |
| Msa0565960 | Msa1275800 | 0.805117 | 1.558650e-49 | -8.615850e-47 |
| Msa0601850 | Msa1275800 | 0.815743 | 7.904761e-52 | -8.615850e-47 |
| Msa0850960 | Msa1275800 | 0.820295 | 7.395752e-53 | -8.615850e-47 |
| Msa0853540 | Msa1275800 | 0.807433 | 5.066609e-50 | -8.615850e-47 |
| Msa0878500 | Msa1275800 | 0.848033 | 7.931659e-60 | -8.615850e-47 |
| Msa0880140 | Msa1275800 | 0.820603 | 6.287328e-53 | -8.615850e-47 |
| Msa0944190 | Msa1275800 | 0.832189 | 1.089315e-55 | -8.615850e-47 |
| Msa0959360 | Msa1275800 | 0.800952 | 1.131944e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275800 | MtrunA17_Chr8g0342871 | 83.224 | 304 | 33 | 4 | 1 | 304 | 1 | 286 | 7.64e-173 | 479 |
| Msa1275800 | MtrunA17_Chr2g0329921 | 48.571 | 315 | 137 | 8 | 1 | 303 | 1 | 302 | 1.32e-85 | 259 |
| Msa1275800 | MtrunA17_Chr4g0054131 | 39.320 | 206 | 107 | 6 | 1 | 196 | 1 | 198 | 4.61e-35 | 129 |
| Msa1275800 | MtrunA17_Chr8g0384671 | 37.500 | 216 | 116 | 5 | 1 | 215 | 1 | 198 | 1.90e-34 | 127 |
| Msa1275800 | MtrunA17_Chr5g0401061 | 38.000 | 200 | 103 | 3 | 1 | 196 | 1 | 183 | 1.47e-33 | 124 |
| Msa1275800 | MtrunA17_Chr2g0293381 | 40.816 | 196 | 107 | 4 | 1 | 196 | 1 | 187 | 1.73e-33 | 124 |
| Msa1275800 | MtrunA17_Chr1g0166681 | 55.556 | 63 | 28 | 0 | 1 | 63 | 1 | 63 | 1.37e-18 | 82.0 |
| Msa1275800 | MtrunA17_Chr8g0383821 | 60.345 | 58 | 23 | 0 | 1 | 58 | 1 | 58 | 5.72e-18 | 79.0 |
| Msa1275800 | MtrunA17_Chr7g0260771 | 43.939 | 66 | 36 | 1 | 132 | 196 | 63 | 128 | 6.74e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275800 | AT1G72740.2 | 43.377 | 302 | 146 | 8 | 1 | 301 | 1 | 278 | 1.52e-66 | 210 |
| Msa1275800 | AT1G17520.4 | 43.810 | 315 | 135 | 8 | 1 | 301 | 1 | 287 | 2.17e-64 | 204 |
| Msa1275800 | AT1G72740.1 | 42.532 | 308 | 146 | 9 | 1 | 301 | 1 | 284 | 4.56e-64 | 204 |
| Msa1275800 | AT1G17520.3 | 43.671 | 316 | 135 | 9 | 1 | 301 | 1 | 288 | 1.41e-62 | 200 |
| Msa1275800 | AT1G17520.1 | 42.991 | 321 | 135 | 9 | 1 | 301 | 1 | 293 | 5.90e-62 | 198 |
| Msa1275800 | AT1G17520.2 | 42.857 | 322 | 135 | 10 | 1 | 301 | 1 | 294 | 3.69e-60 | 194 |
| Msa1275800 | AT1G49950.3 | 36.869 | 198 | 108 | 5 | 1 | 196 | 1 | 183 | 1.85e-31 | 119 |
| Msa1275800 | AT1G49950.1 | 36.869 | 198 | 108 | 5 | 1 | 196 | 1 | 183 | 1.85e-31 | 119 |
| Msa1275800 | AT1G49950.2 | 36.869 | 198 | 108 | 5 | 1 | 196 | 1 | 183 | 1.85e-31 | 119 |
| Msa1275800 | AT3G49850.1 | 34.328 | 201 | 115 | 3 | 1 | 198 | 1 | 187 | 1.61e-28 | 111 |
| Msa1275800 | AT3G49850.2 | 34.328 | 201 | 115 | 3 | 1 | 198 | 1 | 187 | 1.61e-28 | 111 |
| Msa1275800 | AT5G67580.2 | 34.184 | 196 | 120 | 3 | 1 | 196 | 1 | 187 | 1.85e-25 | 103 |
| Msa1275800 | AT5G67580.1 | 34.184 | 196 | 120 | 3 | 1 | 196 | 1 | 187 | 1.85e-25 | 103 |
| Msa1275800 | AT1G54260.1 | 33.333 | 189 | 106 | 3 | 133 | 301 | 6 | 194 | 1.01e-21 | 90.9 |
| Msa1275800 | AT1G54240.1 | 28.736 | 174 | 113 | 5 | 135 | 301 | 57 | 226 | 6.84e-11 | 61.6 |
Find 66 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGCAGTAGAAAATTTA+AGG | 0.122041 | 8_3:-9945156 | None:intergenic |
| ACCAAATCTTGTTTGGATAT+TGG | 0.202357 | 8_3:-9945187 | Msa1275800:three_prime_UTR |
| TTTGGTTTGTTTAGGATAAA+TGG | 0.205337 | 8_3:-9948879 | Msa1275800:intron |
| TGAAGCTCTGACTACATTAA+AGG | 0.241020 | 8_3:-9947157 | Msa1275800:CDS |
| AAAGACATGGCCCTGGTAAA+TGG | 0.273347 | 8_3:-9949042 | Msa1275800:CDS |
| AAAATTTGTAGTCCAGTAAA+TGG | 0.305217 | 8_3:-9945312 | Msa1275800:three_prime_UTR |
| TCCAATATCCAAACAAGATT+TGG | 0.310364 | 8_3:+9945186 | None:intergenic |
| TAAGACTACCAAATCTTGTT+TGG | 0.331453 | 8_3:-9945194 | Msa1275800:three_prime_UTR |
| GAGACTGATGATTGCCGTTT+CGG | 0.334617 | 8_3:+9945704 | None:intergenic |
| AAGTTGTCAACACCATTTAC+TGG | 0.336743 | 8_3:+9945300 | None:intergenic |
| AGCAGCAGCAGGTTTGCATT+TGG | 0.345557 | 8_3:+9948813 | None:intergenic |
| AACTGAAAACAAATCATATC+TGG | 0.352692 | 8_3:-9945612 | Msa1275800:CDS |
| GCAGCAGCAGGTTTGCATTT+GGG | 0.359093 | 8_3:+9948814 | None:intergenic |
| CAAGATAAAAGAAGCCTTGT+TGG | 0.360419 | 8_3:-9945798 | Msa1275800:CDS |
| TGGGAAATCAAAAGCTGAAA+TGG | 0.385077 | 8_3:-9949102 | Msa1275800:CDS |
| ACAGGAGCAGCAGCAGGAAC+AGG | 0.428758 | 8_3:+9948781 | None:intergenic |
| ACTACATTAAAGGATACTAA+TGG | 0.429817 | 8_3:-9947147 | Msa1275800:CDS |
| TGCGCGGTGAAACTATCAAA+TGG | 0.448048 | 8_3:-9945397 | Msa1275800:CDS |
| ACATTGTTCATAAAGTTGTT+CGG | 0.449895 | 8_3:+9945517 | None:intergenic |
| GAAGAAACAGGAGCAGCAGC+AGG | 0.455772 | 8_3:+9948775 | None:intergenic |
| TTTATCAGATTCCTTTAGTA+GGG | 0.463946 | 8_3:-9945263 | Msa1275800:three_prime_UTR |
| ATAATATTACTCAAGTTCCT+AGG | 0.465364 | 8_3:-9948840 | Msa1275800:CDS |
| CAGCAAAACAAAAGGTGGTC+AGG | 0.470148 | 8_3:-9945727 | Msa1275800:CDS |
| GGAGAAGAAGCAGCAGCAGC+AGG | 0.473473 | 8_3:+9948802 | None:intergenic |
| ATTCTCCTTGACCCTCAGTT+CGG | 0.477510 | 8_3:-9949013 | Msa1275800:CDS |
| AGAATGGCTTTCCATTTACC+AGG | 0.481104 | 8_3:+9949031 | None:intergenic |
| GCAGCACTGGAAGAAGAAAC+AGG | 0.483242 | 8_3:+9948763 | None:intergenic |
| ATCACCTTCACCAAAACAAA+AGG | 0.490999 | 8_3:-9945768 | Msa1275800:CDS |
| AAAAGGTGGTCAGGCCGAAA+CGG | 0.494784 | 8_3:-9945718 | Msa1275800:CDS |
| GAACTGAGGGTCAAGGAGAA+TGG | 0.501381 | 8_3:+9949015 | None:intergenic |
| GGAGGAACAATTTGAAGAGG+AGG | 0.508616 | 8_3:+9948685 | None:intergenic |
| GAAGAAGACGCTCTTATCGC+TGG | 0.509747 | 8_3:-9949070 | Msa1275800:CDS |
| TACATGAGTTTCCCTACTAA+AGG | 0.515232 | 8_3:+9945252 | None:intergenic |
| ACTATCAAATGGGCTTAAGA+TGG | 0.517884 | 8_3:-9945386 | Msa1275800:exon |
| GCGCGGTGAAACTATCAAAT+GGG | 0.518902 | 8_3:-9945396 | Msa1275800:CDS |
| AGTCACTGACTGCAAGGTTG+AGG | 0.520186 | 8_3:-9946776 | Msa1275800:CDS |
| TGCCATTGCTAGTTTCATTG+AGG | 0.522914 | 8_3:-9947112 | Msa1275800:intron |
| AGTTTGATTAACAGCAGCAC+TGG | 0.523684 | 8_3:+9948750 | None:intergenic |
| ATCACCTTCAGCAAAACAAA+AGG | 0.539850 | 8_3:-9945735 | Msa1275800:CDS |
| GAGTCAAGGCAAGCTTGAAA+AGG | 0.540743 | 8_3:-9946745 | Msa1275800:intron |
| GGTAACCTTGAGGTCGATGT+TGG | 0.557186 | 8_3:+9948970 | None:intergenic |
| TCAGAAAGTCACTGACTGCA+AGG | 0.561065 | 8_3:-9946782 | Msa1275800:CDS |
| TTAACAACAACATCAGAAGA+AGG | 0.563592 | 8_3:+9948718 | None:intergenic |
| ATTGCTGCAGCAAAAGCATC+CGG | 0.566445 | 8_3:-9946817 | Msa1275800:intron |
| GGTTTGCATTTGGGAAACCT+AGG | 0.568248 | 8_3:+9948823 | None:intergenic |
| TCGTTCCAACATCGACCTCA+AGG | 0.571236 | 8_3:-9948975 | Msa1275800:intron |
| GGAGGAGGAACAATTTGAAG+AGG | 0.571972 | 8_3:+9948682 | None:intergenic |
| CAAATCATATCTGGCAACTG+AGG | 0.579566 | 8_3:-9945603 | Msa1275800:CDS |
| TTGGAACGAGAAGTAAGTAA+AGG | 0.583997 | 8_3:+9948989 | None:intergenic |
| TCTATTTATGCAGGTTTGCG+CGG | 0.584806 | 8_3:-9945413 | Msa1275800:intron |
| TTGAGGATGCTTGTGAGTCA+AGG | 0.588595 | 8_3:-9946759 | Msa1275800:CDS |
| AACTGAGGCAGTCAAGGCGA+CGG | 0.589786 | 8_3:-9945588 | Msa1275800:CDS |
| TCTGGCAACTGAGGCAGTCA+AGG | 0.592576 | 8_3:-9945594 | Msa1275800:CDS |
| TTTGGATATTGGACCCAAAG+TGG | 0.596046 | 8_3:-9945176 | Msa1275800:three_prime_UTR |
| GGAATCGAAAGACATGGCCC+TGG | 0.601309 | 8_3:-9949049 | Msa1275800:CDS |
| AGTCTCTGATGATATGCTGA+AGG | 0.602271 | 8_3:-9945669 | Msa1275800:CDS |
| GGTTTGTTTAGGATAAATGG+AGG | 0.604249 | 8_3:-9948876 | Msa1275800:intron |
| ACCTTCAGCAAAACAAAAGG+TGG | 0.623190 | 8_3:-9945732 | Msa1275800:CDS |
| AACCTCAATGAAACTAGCAA+TGG | 0.624133 | 8_3:+9947110 | None:intergenic |
| AAGGACCGAACTGAGGGTCA+AGG | 0.625130 | 8_3:+9949008 | None:intergenic |
| TAAGTAAAGGACCGAACTGA+GGG | 0.629311 | 8_3:+9949002 | None:intergenic |
| ACCTTCACCAAAACAAAAGG+AGG | 0.631938 | 8_3:-9945765 | Msa1275800:CDS |
| GAATGGCTTTCCATTTACCA+GGG | 0.646220 | 8_3:+9949032 | None:intergenic |
| GTAAGTAAAGGACCGAACTG+AGG | 0.648499 | 8_3:+9949001 | None:intergenic |
| ACTAGCAATGGCATTTACGT+CGG | 0.664174 | 8_3:+9947122 | None:intergenic |
| ATCGCTGGAATCGAAAGACA+TGG | 0.677427 | 8_3:-9949055 | Msa1275800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAATTTAAATTAAAAA+AGG | + | chr8_3:9945422-9945441 | None:intergenic | 0.0% |
| !!! | TTTTAATTTTTAATATTTTT+TGG | - | chr8_3:9945436-9945455 | Msa1275800:intron | 0.0% |
| !!! | GACTAAATTTTTTATTTTTT+TGG | + | chr8_3:9945918-9945937 | None:intergenic | 10.0% |
| !!! | ATTATAAATGTTTTGTTAAA+AGG | - | chr8_3:9946675-9946694 | Msa1275800:intron | 10.0% |
| !!! | TTATAAATGTTTTGTTAAAA+GGG | - | chr8_3:9946676-9946695 | Msa1275800:intron | 10.0% |
| !! | ACTAAAAGTTTAATTAAATT+TGG | + | chr8_3:9946871-9946890 | None:intergenic | 10.0% |
| !! | TTAATATATCAGATTATATT+AGG | - | chr8_3:9947107-9947126 | Msa1275800:intron | 10.0% |
| !!! | TAATATTTTTTGGTTTGTTT+AGG | - | chr8_3:9945446-9945465 | Msa1275800:intron | 15.0% |
| !! | AAAACATTTATAATACTTAC+AGG | + | chr8_3:9946669-9946688 | None:intergenic | 15.0% |
| !!! | TTTAATTAAATTTGGTGAAA+CGG | + | chr8_3:9946863-9946882 | None:intergenic | 15.0% |
| !! | ATGTAAGAATTAAAATACCT+AGG | + | chr8_3:9945714-9945733 | None:intergenic | 20.0% |
| !! | AAATAAAATATTGTTGAGTG+AGG | - | chr8_3:9946077-9946096 | Msa1275800:intron | 20.0% |
| !! | AATAAAATATTGTTGAGTGA+GGG | - | chr8_3:9946078-9946097 | Msa1275800:intron | 20.0% |
| !! | AGAGTTTATTCAAGATTTAT+TGG | - | chr8_3:9946194-9946213 | Msa1275800:intron | 20.0% |
| !!! | TTTTGTACTAAATAGTGAAT+CGG | - | chr8_3:9946317-9946336 | Msa1275800:intron | 20.0% |
| !! | TAATGATTCTTTACATTCAT+TGG | - | chr8_3:9946596-9946615 | Msa1275800:intron | 20.0% |
| !!! | TTAATTAAATTTGGTGAAAC+GGG | + | chr8_3:9946862-9946881 | None:intergenic | 20.0% |
| !!! | TTCTTTTGCTATTAATTTGA+TGG | - | chr8_3:9947049-9947068 | Msa1275800:intron | 20.0% |
| !! | ATCAGATTATATTAGGTTAT+TGG | - | chr8_3:9947114-9947133 | Msa1275800:CDS | 20.0% |
| !! | TATTGTTAAATCATGTTGTT+TGG | - | chr8_3:9947695-9947714 | Msa1275800:intron | 20.0% |
| !! | TTTTGTTGAATGTGAAGAAT+GGG | - | chr8_3:9945212-9945231 | Msa1275800:three_prime_UTR | 25.0% |
| !!! | TTTGGTTTGTTTAGGATAAA+TGG | - | chr8_3:9945454-9945473 | Msa1275800:intron | 25.0% |
| ! | ATAATATTACTCAAGTTCCT+AGG | - | chr8_3:9945493-9945512 | Msa1275800:intron | 25.0% |
| !!! | TGATGTTTTTAACAACATCT+TGG | + | chr8_3:9945689-9945708 | None:intergenic | 25.0% |
| ! | GTCAAATTGTTACATAATAG+TGG | - | chr8_3:9945935-9945954 | Msa1275800:intron | 25.0% |
| ! | ATTGTTACATAATAGTGGTT+TGG | - | chr8_3:9945940-9945959 | Msa1275800:intron | 25.0% |
| ! | ATTCAAGATTTATTGGAGTA+AGG | - | chr8_3:9946201-9946220 | Msa1275800:intron | 25.0% |
| ! | ATAGTGTATTGTTACAATTC+TGG | - | chr8_3:9946247-9946266 | Msa1275800:intron | 25.0% |
| ! | TACAAAATGTTGTCAAATAG+CGG | + | chr8_3:9946304-9946323 | None:intergenic | 25.0% |
| ! | ATTATGACTCTGTAGTTAAA+AGG | - | chr8_3:9946516-9946535 | Msa1275800:intron | 25.0% |
| !! | ACAATATCTTTGTTTCATGA+GGG | + | chr8_3:9946815-9946834 | None:intergenic | 25.0% |
| !! | TACAATATCTTTGTTTCATG+AGG | + | chr8_3:9946816-9946835 | None:intergenic | 25.0% |
| !! | GGTTTTTAAATTGATCCTAT+AGG | - | chr8_3:9946926-9946945 | Msa1275800:intron | 25.0% |
| !! | GTACTTTTGTTCCTTTTATT+AGG | - | chr8_3:9947136-9947155 | Msa1275800:CDS | 25.0% |
| ! | ATGACATCATACCTAATAAA+AGG | + | chr8_3:9947150-9947169 | None:intergenic | 25.0% |
| ! | ACTACATTAAAGGATACTAA+TGG | - | chr8_3:9947186-9947205 | Msa1275800:intron | 25.0% |
| ! | TTGCATAATCTCAAAAAACA+GGG | + | chr8_3:9947323-9947342 | None:intergenic | 25.0% |
| ! | ATTGCATAATCTCAAAAAAC+AGG | + | chr8_3:9947324-9947343 | None:intergenic | 25.0% |
| ! | ATATCAACTACTAGAATGAA+TGG | - | chr8_3:9947355-9947374 | Msa1275800:intron | 25.0% |
| !! | TAATTTTCCTTGATGTAACT+TGG | - | chr8_3:9947387-9947406 | Msa1275800:intron | 25.0% |
| !! | ACTTGGAAAACTAGTTTATA+TGG | - | chr8_3:9947404-9947423 | Msa1275800:intron | 25.0% |
| !! | ATTTGAACGTGTATTTTACT+TGG | - | chr8_3:9947669-9947688 | Msa1275800:intron | 25.0% |
| ! | AAAATACAAGGGAAAAATTG+TGG | + | chr8_3:9947803-9947822 | None:intergenic | 25.0% |
| ! | ACAGACACTAAAAAATACAA+GGG | + | chr8_3:9947814-9947833 | None:intergenic | 25.0% |
| ! | TTTATGTATTCAAGATCTCT+TGG | - | chr8_3:9947907-9947926 | Msa1275800:intron | 25.0% |
| !! | TGGTTAATTTGGAAACTTAT+AGG | - | chr8_3:9947927-9947946 | Msa1275800:intron | 25.0% |
| !! | AACTTGAATTCTTTGAAAGA+GGG | - | chr8_3:9948165-9948184 | Msa1275800:intron | 25.0% |
| ! | AACAAACTTCAAGATATTTC+AGG | + | chr8_3:9948433-9948452 | None:intergenic | 25.0% |
| ! | AACTGAAAACAAATCATATC+TGG | - | chr8_3:9948721-9948740 | Msa1275800:CDS | 25.0% |
| ! | ACATTGTTCATAAAGTTGTT+CGG | + | chr8_3:9948819-9948838 | None:intergenic | 25.0% |
| ! | AATTATAACCATTGATCTTG+TGG | - | chr8_3:9948896-9948915 | Msa1275800:intron | 25.0% |
| ! | ATTATAACCATTGATCTTGT+GGG | - | chr8_3:9948897-9948916 | Msa1275800:intron | 25.0% |
| ! | AAAATTTGTAGTCCAGTAAA+TGG | - | chr8_3:9949021-9949040 | Msa1275800:CDS | 25.0% |
| !! | TTTTATCAGATTCCTTTAGT+AGG | - | chr8_3:9949069-9949088 | Msa1275800:CDS | 25.0% |
| ! | TTTATCAGATTCCTTTAGTA+GGG | - | chr8_3:9949070-9949089 | Msa1275800:CDS | 25.0% |
| !! | GTTTTGTTGAATGTGAAGAA+TGG | - | chr8_3:9945211-9945230 | Msa1275800:three_prime_UTR | 30.0% |
| TTAACAACAACATCAGAAGA+AGG | + | chr8_3:9945618-9945637 | None:intergenic | 30.0% | |
| TTGTTAAAAACATCACACCT+AGG | - | chr8_3:9945694-9945713 | Msa1275800:CDS | 30.0% | |
| ! | GTTGTGAGGAAATTTTATGT+GGG | - | chr8_3:9945962-9945981 | Msa1275800:intron | 30.0% |
| AAATAAACACACGCACTAAA+GGG | + | chr8_3:9946020-9946039 | None:intergenic | 30.0% | |
| TTGTTAAATAGCAGCTATAG+AGG | + | chr8_3:9946388-9946407 | None:intergenic | 30.0% | |
| ! | CTATAGCTGCTATTTAACAA+CGG | - | chr8_3:9946388-9946407 | Msa1275800:intron | 30.0% |
| ! | AGTTAAAAGGCTTTTGTACT+CGG | - | chr8_3:9946529-9946548 | Msa1275800:intron | 30.0% |
| !! | TGTTTTGTTAAAAGGGTAGA+AGG | - | chr8_3:9946683-9946702 | Msa1275800:intron | 30.0% |
| !! | ATTAGAGCATCATTTTGTAC+TGG | - | chr8_3:9946711-9946730 | Msa1275800:intron | 30.0% |
| !! | TTAGAGCATCATTTTGTACT+GGG | - | chr8_3:9946712-9946731 | Msa1275800:intron | 30.0% |
| ! | AATATCTTTGTTTCATGAGG+GGG | + | chr8_3:9946813-9946832 | None:intergenic | 30.0% |
| ! | CAATATCTTTGTTTCATGAG+GGG | + | chr8_3:9946814-9946833 | None:intergenic | 30.0% |
| ! | TAGTTTTCCAAGTTACATCA+AGG | + | chr8_3:9947397-9947416 | None:intergenic | 30.0% |
| !!! | TTTCTGAAATTTTGAGGAAC+CGG | + | chr8_3:9947538-9947557 | None:intergenic | 30.0% |
| !!! | AGTGACTTTCTGAAATTTTG+AGG | + | chr8_3:9947544-9947563 | None:intergenic | 30.0% |
| CACAGACACTAAAAAATACA+AGG | + | chr8_3:9947815-9947834 | None:intergenic | 30.0% | |
| !!! | TGTATTTTTTAGTGTCTGTG+CGG | - | chr8_3:9947815-9947834 | Msa1275800:intron | 30.0% |
| TCAAGATCTCTTGGTTAATT+TGG | - | chr8_3:9947916-9947935 | Msa1275800:intron | 30.0% | |
| ! | GCATTGTTTTCCACTAAAAT+AGG | - | chr8_3:9948080-9948099 | Msa1275800:intron | 30.0% |
| ! | TTGTTTTCCACTAAAATAGG+TGG | - | chr8_3:9948083-9948102 | Msa1275800:intron | 30.0% |
| ! | TCAAGTTCTAACGAATATGA+TGG | + | chr8_3:9948152-9948171 | None:intergenic | 30.0% |
| ! | GAACTTGAATTCTTTGAAAG+AGG | - | chr8_3:9948164-9948183 | Msa1275800:intron | 30.0% |
| TCTGTTATTGTAAGGATCTT+GGG | - | chr8_3:9948211-9948230 | Msa1275800:intron | 30.0% | |
| !!! | ATGGTGTTGACAACTTTTTT+TGG | - | chr8_3:9949040-9949059 | Msa1275800:CDS | 30.0% |
| !!! | TGGTGTTGACAACTTTTTTT+GGG | - | chr8_3:9949041-9949060 | Msa1275800:CDS | 30.0% |
| TAAGACTACCAAATCTTGTT+TGG | - | chr8_3:9949139-9949158 | Msa1275800:five_prime_UTR | 30.0% | |
| ! | ACCAAATCTTGTTTGGATAT+TGG | - | chr8_3:9949146-9949165 | Msa1275800:five_prime_UTR | 30.0% |
| TCCAATATCCAAACAAGATT+TGG | + | chr8_3:9949150-9949169 | None:intergenic | 30.0% | |
| TGGGAAATCAAAAGCTGAAA+TGG | - | chr8_3:9945231-9945250 | Msa1275800:three_prime_UTR | 35.0% | |
| TTGGAACGAGAAGTAAGTAA+AGG | + | chr8_3:9945347-9945366 | None:intergenic | 35.0% | |
| AAAACGAAAACCCTAAGCTA+GGG | + | chr8_3:9945392-9945411 | None:intergenic | 35.0% | |
| AAAAACGAAAACCCTAAGCT+AGG | + | chr8_3:9945393-9945412 | None:intergenic | 35.0% | |
| ! | GGTTTGTTTAGGATAAATGG+AGG | - | chr8_3:9945457-9945476 | Msa1275800:intron | 35.0% |
| !! | ACATCTTGGTCATTTTGAAG+AGG | + | chr8_3:9945675-9945694 | None:intergenic | 35.0% |
| TCCTGAACAATTCATCATTG+GGG | + | chr8_3:9945780-9945799 | None:intergenic | 35.0% | |
| CTCCTGAACAATTCATCATT+GGG | + | chr8_3:9945781-9945800 | None:intergenic | 35.0% | |
| TCTCCTGAACAATTCATCAT+TGG | + | chr8_3:9945782-9945801 | None:intergenic | 35.0% | |
| ! | AGAACCTGAGTTTGATTTCT+TGG | - | chr8_3:9945799-9945818 | Msa1275800:CDS | 35.0% |
| !! | ATAATAGTGGTTTGGTTGTG+AGG | - | chr8_3:9945948-9945967 | Msa1275800:intron | 35.0% |
| ! | GGTTGTGAGGAAATTTTATG+TGG | - | chr8_3:9945961-9945980 | Msa1275800:intron | 35.0% |
| ! | GAAATTTTATGTGGGTGTCT+GGG | - | chr8_3:9945970-9945989 | Msa1275800:intron | 35.0% |
| AATAAACACACGCACTAAAG+GGG | + | chr8_3:9946019-9946038 | None:intergenic | 35.0% | |
| CAAATAAACACACGCACTAA+AGG | + | chr8_3:9946021-9946040 | None:intergenic | 35.0% | |
| TGCGTGTGTTTATTTGAGTA+TGG | - | chr8_3:9946025-9946044 | Msa1275800:intron | 35.0% | |
| GCGTGTGTTTATTTGAGTAT+GGG | - | chr8_3:9946026-9946045 | Msa1275800:intron | 35.0% | |
| GTGTTTATTTGAGTATGGGT+TGG | - | chr8_3:9946030-9946049 | Msa1275800:intron | 35.0% | |
| CATATTATCTCATCCAATGC+AGG | + | chr8_3:9946106-9946125 | None:intergenic | 35.0% | |
| AAAACCGTCTTAAAAGGAGA+GGG | + | chr8_3:9946160-9946179 | None:intergenic | 35.0% | |
| CTCTACAAAACCGTCTTAAA+AGG | + | chr8_3:9946166-9946185 | None:intergenic | 35.0% | |
| !!! | CTTTTAAGACGGTTTTGTAG+AGG | - | chr8_3:9946164-9946183 | Msa1275800:intron | 35.0% |
| CTTTACATTCATTGGATGTC+TGG | - | chr8_3:9946604-9946623 | Msa1275800:intron | 35.0% | |
| TATGTGACAATCAGTCTGAT+CGG | - | chr8_3:9946898-9946917 | Msa1275800:intron | 35.0% | |
| GTCATTACATGTACACCTAT+AGG | + | chr8_3:9946944-9946963 | None:intergenic | 35.0% | |
| ATAGGTGTACATGTAATGAC+AGG | - | chr8_3:9946944-9946963 | Msa1275800:intron | 35.0% | |
| TAGGTGTACATGTAATGACA+GGG | - | chr8_3:9946945-9946964 | Msa1275800:intron | 35.0% | |
| ! | TGAAGCTCTGACTACATTAA+AGG | - | chr8_3:9947176-9947195 | Msa1275800:CDS | 35.0% |
| AACCTCAATGAAACTAGCAA+TGG | + | chr8_3:9947226-9947245 | None:intergenic | 35.0% | |
| TACTATACCATTTCGTGAGT+TGG | - | chr8_3:9947288-9947307 | Msa1275800:intron | 35.0% | |
| TTTCAAACCAACTCACGAAA+TGG | + | chr8_3:9947298-9947317 | None:intergenic | 35.0% | |
| TATCACGTAAGTATCAACAG+AGG | + | chr8_3:9947623-9947642 | None:intergenic | 35.0% | |
| AACTTATAGGTATAGCTGTG+TGG | - | chr8_3:9947940-9947959 | Msa1275800:intron | 35.0% | |
| ACTTATAGGTATAGCTGTGT+GGG | - | chr8_3:9947941-9947960 | Msa1275800:intron | 35.0% | |
| GCTATCGTAGAATATTGCTT+TGG | - | chr8_3:9947994-9948013 | Msa1275800:intron | 35.0% | |
| !! | GTTGTTGAGAAGTTTCTAGT+GGG | + | chr8_3:9948038-9948057 | None:intergenic | 35.0% |
| ! | TGTTGTTGAGAAGTTTCTAG+TGG | + | chr8_3:9948039-9948058 | None:intergenic | 35.0% |
| ! | CTTAAGTTGCACATATCTCT+GGG | + | chr8_3:9948117-9948136 | None:intergenic | 35.0% |
| ! | ACTTAAGTTGCACATATCTC+TGG | + | chr8_3:9948118-9948137 | None:intergenic | 35.0% |
| ! | TTAGTGGCTCTGTTATTGTA+AGG | - | chr8_3:9948203-9948222 | Msa1275800:intron | 35.0% |
| CTCTGTTATTGTAAGGATCT+TGG | - | chr8_3:9948210-9948229 | Msa1275800:intron | 35.0% | |
| TTATTGTAAGGATCTTGGGT+GGG | - | chr8_3:9948215-9948234 | Msa1275800:intron | 35.0% | |
| ! | ATTGGAAAGAGTGATGATGA+TGG | + | chr8_3:9948279-9948298 | None:intergenic | 35.0% |
| !! | ATTTTGGAGAGTTTTAGTCC+TGG | + | chr8_3:9948342-9948361 | None:intergenic | 35.0% |
| ! | ATGCACAGGAACATCTATTT+TGG | + | chr8_3:9948358-9948377 | None:intergenic | 35.0% |
| !!! | TCCAATTTTTTACCATCTGC+AGG | - | chr8_3:9948499-9948518 | Msa1275800:intron | 35.0% |
| TCCTGCAGATGGTAAAAAAT+TGG | + | chr8_3:9948503-9948522 | None:intergenic | 35.0% | |
| ! | AACAATTTTGTTCCTGCAGA+TGG | + | chr8_3:9948514-9948533 | None:intergenic | 35.0% |
| ! | CAAGATAAAAGAAGCCTTGT+TGG | - | chr8_3:9948535-9948554 | Msa1275800:intron | 35.0% |
| !!! | AGGTGATTTTTTCACCAACA+AGG | + | chr8_3:9948552-9948571 | None:intergenic | 35.0% |
| ATCACCTTCACCAAAACAAA+AGG | - | chr8_3:9948565-9948584 | Msa1275800:intron | 35.0% | |
| !!! | TTTTGTTTTGCTGAAGGTGA+TGG | + | chr8_3:9948599-9948618 | None:intergenic | 35.0% |
| ATCACCTTCAGCAAAACAAA+AGG | - | chr8_3:9948598-9948617 | Msa1275800:intron | 35.0% | |
| AAATAGACCCACAAGATCAA+TGG | + | chr8_3:9948907-9948926 | None:intergenic | 35.0% | |
| ! | ACTATCAAATGGGCTTAAGA+TGG | - | chr8_3:9948947-9948966 | Msa1275800:intron | 35.0% |
| AAGTTGTCAACACCATTTAC+TGG | + | chr8_3:9949036-9949055 | None:intergenic | 35.0% | |
| !!! | GGTGTTGACAACTTTTTTTG+GGG | - | chr8_3:9949042-9949061 | Msa1275800:CDS | 35.0% |
| TACATGAGTTTCCCTACTAA+AGG | + | chr8_3:9949084-9949103 | None:intergenic | 35.0% | |
| ! | TTTTCTACTGCTTCCACTTT+GGG | + | chr8_3:9949173-9949192 | None:intergenic | 35.0% |
| ! | ATTTTCTACTGCTTCCACTT+TGG | + | chr8_3:9949174-9949193 | None:intergenic | 35.0% |
| GAATGGCTTTCCATTTACCA+GGG | + | chr8_3:9945304-9945323 | None:intergenic | 40.0% | |
| AGAATGGCTTTCCATTTACC+AGG | + | chr8_3:9945305-9945324 | None:intergenic | 40.0% | |
| TAAGTAAAGGACCGAACTGA+GGG | + | chr8_3:9945334-9945353 | None:intergenic | 40.0% | |
| AGTTTGATTAACAGCAGCAC+TGG | + | chr8_3:9945586-9945605 | None:intergenic | 40.0% | |
| !! | TCTTGGTCATTTTGAAGAGG+AGG | + | chr8_3:9945672-9945691 | None:intergenic | 40.0% |
| CCTGAACAATTCATCATTGG+GGG | + | chr8_3:9945779-9945798 | None:intergenic | 40.0% | |
| ! | ACCTGAGTTTGATTTCTTGG+TGG | - | chr8_3:9945802-9945821 | Msa1275800:CDS | 40.0% |
| TCCACCAAGAAATCAAACTC+AGG | + | chr8_3:9945806-9945825 | None:intergenic | 40.0% | |
| TAATTCAGAGTTCGGTCAGA+AGG | + | chr8_3:9945858-9945877 | None:intergenic | 40.0% | |
| !!! | TTTTTTTGGCGTTAACCCTC+CGG | + | chr8_3:9945904-9945923 | None:intergenic | 40.0% |
| ! | GGAAATTTTATGTGGGTGTC+TGG | - | chr8_3:9945969-9945988 | Msa1275800:intron | 40.0% |
| ATAAACACACGCACTAAAGG+GGG | + | chr8_3:9946018-9946037 | None:intergenic | 40.0% | |
| !! | TTGAGTATGGGTTGGTTACT+TGG | - | chr8_3:9946038-9946057 | Msa1275800:intron | 40.0% |
| !! | ACATCCCTCTCCTTTTAAGA+CGG | - | chr8_3:9946153-9946172 | Msa1275800:intron | 40.0% |
| CAAAACCGTCTTAAAAGGAG+AGG | + | chr8_3:9946161-9946180 | None:intergenic | 40.0% | |
| !! | TTAAGACGGTTTTGTAGAGG+TGG | - | chr8_3:9946167-9946186 | Msa1275800:intron | 40.0% |
| AGGAGCTATACTGCTAGTAA+TGG | + | chr8_3:9946368-9946387 | None:intergenic | 40.0% | |
| ! | CTGCTATTTAACAACGGTGT+TGG | - | chr8_3:9946394-9946413 | Msa1275800:intron | 40.0% |
| AGTGACATGAATGAGCCTAT+AGG | + | chr8_3:9946434-9946453 | None:intergenic | 40.0% | |
| CATGTCACTCTCTAGATGTT+TGG | - | chr8_3:9946445-9946464 | Msa1275800:intron | 40.0% | |
| ATGTTTGGTTGTTGTAGTCG+TGG | - | chr8_3:9946460-9946479 | Msa1275800:intron | 40.0% | |
| TGTTTGGTTGTTGTAGTCGT+GGG | - | chr8_3:9946461-9946480 | Msa1275800:intron | 40.0% | |
| ! | AAAAGGCTTTTGTACTCGGA+TGG | - | chr8_3:9946533-9946552 | Msa1275800:intron | 40.0% |
| ! | GCATCATTTTGTACTGGGAT+TGG | - | chr8_3:9946717-9946736 | Msa1275800:intron | 40.0% |
| TATATCGTAGTGACTAGCGA+TGG | - | chr8_3:9946765-9946784 | Msa1275800:CDS | 40.0% | |
| CAATCAGTCTGATCGGTAAA+AGG | - | chr8_3:9946905-9946924 | Msa1275800:intron | 40.0% | |
| ACTAGCAATGGCATTTACGT+CGG | + | chr8_3:9947214-9947233 | None:intergenic | 40.0% | |
| ! | TGCCATTGCTAGTTTCATTG+AGG | - | chr8_3:9947221-9947240 | Msa1275800:intron | 40.0% |
| ! | ATCATGTTGTTTGGTCGAGT+TGG | - | chr8_3:9947704-9947723 | Msa1275800:intron | 40.0% |
| GAAAAATTGTGGAGCATAGG+AGG | + | chr8_3:9947792-9947811 | None:intergenic | 40.0% | |
| AGGGAAAAATTGTGGAGCAT+AGG | + | chr8_3:9947795-9947814 | None:intergenic | 40.0% | |
| TCACCTTTGTTCAAGCTTAG+TGG | - | chr8_3:9947860-9947879 | Msa1275800:intron | 40.0% | |
| AGACCACTAAGCTTGAACAA+AGG | + | chr8_3:9947866-9947885 | None:intergenic | 40.0% | |
| AACAACATGCACAGTCGATA+AGG | - | chr8_3:9948052-9948071 | Msa1275800:intron | 40.0% | |
| !! | TGACATGCCACCTATTTTAG+TGG | + | chr8_3:9948093-9948112 | None:intergenic | 40.0% |
| GTTATTGTAAGGATCTTGGG+TGG | - | chr8_3:9948214-9948233 | Msa1275800:intron | 40.0% | |
| TATTGTAAGGATCTTGGGTG+GGG | - | chr8_3:9948216-9948235 | Msa1275800:intron | 40.0% | |
| AGTGTTGCGTGTAGAAACAT+TGG | + | chr8_3:9948297-9948316 | None:intergenic | 40.0% | |
| ACCTTCACCAAAACAAAAGG+AGG | - | chr8_3:9948568-9948587 | Msa1275800:intron | 40.0% | |
| ACCTTCAGCAAAACAAAAGG+TGG | - | chr8_3:9948601-9948620 | Msa1275800:intron | 40.0% | |
| !!! | ACCACCTTTTGTTTTGCTGA+AGG | + | chr8_3:9948605-9948624 | None:intergenic | 40.0% |
| AGTCTCTGATGATATGCTGA+AGG | - | chr8_3:9948664-9948683 | Msa1275800:CDS | 40.0% | |
| CAAATCATATCTGGCAACTG+AGG | - | chr8_3:9948730-9948749 | Msa1275800:CDS | 40.0% | |
| TCTTGTGGGTCTATTTATGC+AGG | - | chr8_3:9948911-9948930 | Msa1275800:intron | 40.0% | |
| TCTATTTATGCAGGTTTGCG+CGG | - | chr8_3:9948920-9948939 | Msa1275800:intron | 40.0% | |
| TTTGGATATTGGACCCAAAG+TGG | - | chr8_3:9949157-9949176 | Msa1275800:five_prime_UTR | 40.0% | |
| ATCGCTGGAATCGAAAGACA+TGG | - | chr8_3:9945278-9945297 | Msa1275800:three_prime_UTR | 45.0% | |
| AAAGACATGGCCCTGGTAAA+TGG | - | chr8_3:9945291-9945310 | Msa1275800:three_prime_UTR | 45.0% | |
| ATTCTCCTTGACCCTCAGTT+CGG | - | chr8_3:9945320-9945339 | Msa1275800:three_prime_UTR | 45.0% | |
| GTAAGTAAAGGACCGAACTG+AGG | + | chr8_3:9945335-9945354 | None:intergenic | 45.0% | |
| AGGTTACCTTACCCTAGCTT+AGG | - | chr8_3:9945378-9945397 | Msa1275800:exon | 45.0% | |
| GGTTACCTTACCCTAGCTTA+GGG | - | chr8_3:9945379-9945398 | Msa1275800:exon | 45.0% | |
| GAAAACCCTAAGCTAGGGTA+AGG | + | chr8_3:9945387-9945406 | None:intergenic | 45.0% | |
| GGTTTGCATTTGGGAAACCT+AGG | + | chr8_3:9945513-9945532 | None:intergenic | 45.0% | |
| GGAGGAACAATTTGAAGAGG+AGG | + | chr8_3:9945651-9945670 | None:intergenic | 45.0% | |
| GGAGGAGGAACAATTTGAAG+AGG | + | chr8_3:9945654-9945673 | None:intergenic | 45.0% | |
| !! | TGGTCATTTTGAAGAGGAGG+AGG | + | chr8_3:9945669-9945688 | None:intergenic | 45.0% |
| CCCCCAATGATGAATTGTTC+AGG | - | chr8_3:9945776-9945795 | Msa1275800:CDS | 45.0% | |
| TGACCGAACTCTGAATTACC+AGG | - | chr8_3:9945860-9945879 | Msa1275800:intron | 45.0% | |
| GACCGAACTCTGAATTACCA+GGG | - | chr8_3:9945861-9945880 | Msa1275800:intron | 45.0% | |
| AGCCCTGGTAATTCAGAGTT+CGG | + | chr8_3:9945866-9945885 | None:intergenic | 45.0% | |
| !! | GGGTTGGTTACTTGGTCAAT+TGG | - | chr8_3:9946046-9946065 | Msa1275800:intron | 45.0% |
| TGGAGTAAGGTTGTCAATCG+CGG | - | chr8_3:9946214-9946233 | Msa1275800:intron | 45.0% | |
| ATGAGCCTATAGGCTATAGC+AGG | + | chr8_3:9946424-9946443 | None:intergenic | 45.0% | |
| ! | TTTTGTACTCGGATGGTCGA+CGG | - | chr8_3:9946540-9946559 | Msa1275800:intron | 45.0% |
| !! | ATTGCTGCAGCAAAAGCATC+CGG | - | chr8_3:9947516-9947535 | Msa1275800:intron | 45.0% |
| ! | TCAGAAAGTCACTGACTGCA+AGG | - | chr8_3:9947551-9947570 | Msa1275800:intron | 45.0% |
| TTGAGGATGCTTGTGAGTCA+AGG | - | chr8_3:9947574-9947593 | Msa1275800:intron | 45.0% | |
| GAGTCAAGGCAAGCTTGAAA+AGG | - | chr8_3:9947588-9947607 | Msa1275800:intron | 45.0% | |
| GTATAGCTGTGTGGGTGATT+TGG | - | chr8_3:9947949-9947968 | Msa1275800:intron | 45.0% | |
| TTGCTTTGGCAATTGACCAG+AGG | - | chr8_3:9948008-9948027 | Msa1275800:intron | 45.0% | |
| TGCTTTGGCAATTGACCAGA+GGG | - | chr8_3:9948009-9948028 | Msa1275800:intron | 45.0% | |
| ATTGTAAGGATCTTGGGTGG+GGG | - | chr8_3:9948217-9948236 | Msa1275800:intron | 45.0% | |
| !!! | GGGGATTTTTTCGCAAGTAG+AGG | - | chr8_3:9948236-9948255 | Msa1275800:intron | 45.0% |
| !! | GAGAGTTTTAGTCCTGGCAA+TGG | + | chr8_3:9948336-9948355 | None:intergenic | 45.0% |
| AGATGTTCCTGTGCATCCAT+TGG | - | chr8_3:9948362-9948381 | Msa1275800:intron | 45.0% | |
| GATGTTCCTGTGCATCCATT+GGG | - | chr8_3:9948363-9948382 | Msa1275800:intron | 45.0% | |
| !!! | GCCTCCTTTTGTTTTGGTGA+AGG | + | chr8_3:9948572-9948591 | None:intergenic | 45.0% |
| !! | TTTTGCTGAAGGTGATGGCT+TGG | + | chr8_3:9948594-9948613 | None:intergenic | 45.0% |
| CAGCAAAACAAAAGGTGGTC+AGG | - | chr8_3:9948606-9948625 | Msa1275800:intron | 45.0% | |
| ! | GAGACTGATGATTGCCGTTT+CGG | + | chr8_3:9948632-9948651 | None:intergenic | 45.0% |
| GACGGAAAAATACTCACGCA+TGG | - | chr8_3:9948763-9948782 | Msa1275800:CDS | 45.0% | |
| TGCGCGGTGAAACTATCAAA+TGG | - | chr8_3:9948936-9948955 | Msa1275800:intron | 45.0% | |
| GCGCGGTGAAACTATCAAAT+GGG | - | chr8_3:9948937-9948956 | Msa1275800:intron | 45.0% | |
| GAAGAAGACGCTCTTATCGC+TGG | - | chr8_3:9945263-9945282 | Msa1275800:three_prime_UTR | 50.0% | |
| GAACTGAGGGTCAAGGAGAA+TGG | + | chr8_3:9945321-9945340 | None:intergenic | 50.0% | |
| TCGTTCCAACATCGACCTCA+AGG | - | chr8_3:9945358-9945377 | Msa1275800:three_prime_UTR | 50.0% | |
| GGTAACCTTGAGGTCGATGT+TGG | + | chr8_3:9945366-9945385 | None:intergenic | 50.0% | |
| GCTAGGGTAAGGTAACCTTG+AGG | + | chr8_3:9945376-9945395 | None:intergenic | 50.0% | |
| GCAGCAGCAGGTTTGCATTT+GGG | + | chr8_3:9945522-9945541 | None:intergenic | 50.0% | |
| AGCAGCAGCAGGTTTGCATT+TGG | + | chr8_3:9945523-9945542 | None:intergenic | 50.0% | |
| ! | GCAGCACTGGAAGAAGAAAC+AGG | + | chr8_3:9945573-9945592 | None:intergenic | 50.0% |
| !! | TTTTCAGGGGAAATGAGCCC+TGG | + | chr8_3:9945881-9945900 | None:intergenic | 50.0% |
| GGCTCATTTCCCCTGAAAAC+CGG | - | chr8_3:9945882-9945901 | Msa1275800:intron | 50.0% | |
| TCATTTCCCCTGAAAACCGG+AGG | - | chr8_3:9945885-9945904 | Msa1275800:intron | 50.0% | |
| CATTTCCCCTGAAAACCGGA+GGG | - | chr8_3:9945886-9945905 | Msa1275800:intron | 50.0% | |
| ! | GTTAACCCTCCGGTTTTCAG+GGG | + | chr8_3:9945894-9945913 | None:intergenic | 50.0% |
| ! | CGTTAACCCTCCGGTTTTCA+GGG | + | chr8_3:9945895-9945914 | None:intergenic | 50.0% |
| ACGCACTAAAGGGGGAATTG+TGG | + | chr8_3:9946010-9946029 | None:intergenic | 50.0% | |
| TTGAGTGAGGGTTCCTGCAT+TGG | - | chr8_3:9946090-9946109 | Msa1275800:intron | 50.0% | |
| AGGTTGTCAATCGCGGATAG+CGG | - | chr8_3:9946221-9946240 | Msa1275800:intron | 50.0% | |
| GACCACCTGCTATAGCCTAT+AGG | - | chr8_3:9946416-9946435 | Msa1275800:intron | 50.0% | |
| AGCCTATAGGCTATAGCAGG+TGG | + | chr8_3:9946421-9946440 | None:intergenic | 50.0% | |
| ATGTCTGGTAGTCGTAGTCC+TGG | - | chr8_3:9946619-9946638 | Msa1275800:intron | 50.0% | |
| TGTCTGGTAGTCGTAGTCCT+GGG | - | chr8_3:9946620-9946639 | Msa1275800:intron | 50.0% | |
| AACAAACACCTCTCATGCCC+AGG | + | chr8_3:9946640-9946659 | None:intergenic | 50.0% | |
| ! | AGTCACTGACTGCAAGGTTG+AGG | - | chr8_3:9947557-9947576 | Msa1275800:intron | 50.0% |
| AATTGTGGAGCATAGGAGGC+AGG | + | chr8_3:9947788-9947807 | None:intergenic | 50.0% | |
| ! | GTAGTGCCTCTGCTGTTTAG+TGG | - | chr8_3:9948187-9948206 | Msa1275800:intron | 50.0% |
| ACAGAGCCACTAAACAGCAG+AGG | + | chr8_3:9948196-9948215 | None:intergenic | 50.0% | |
| ! | CATTGCTAGCTTCCATTGCC+AGG | - | chr8_3:9948321-9948340 | Msa1275800:intron | 50.0% |
| !! | GGCTTGGCCTCCTTTTGTTT+TGG | + | chr8_3:9948578-9948597 | None:intergenic | 50.0% |
| AAAAGGTGGTCAGGCCGAAA+CGG | - | chr8_3:9948615-9948634 | Msa1275800:intron | 50.0% | |
| GGAATCGAAAGACATGGCCC+TGG | - | chr8_3:9945284-9945303 | Msa1275800:three_prime_UTR | 55.0% | |
| AAGGACCGAACTGAGGGTCA+AGG | + | chr8_3:9945328-9945347 | None:intergenic | 55.0% | |
| GAAGAAACAGGAGCAGCAGC+AGG | + | chr8_3:9945561-9945580 | None:intergenic | 55.0% | |
| ! | GCGTTAACCCTCCGGTTTTC+AGG | + | chr8_3:9945896-9945915 | None:intergenic | 55.0% |
| AAGGGGGAATTGTGGAGACC+AGG | + | chr8_3:9946002-9946021 | None:intergenic | 55.0% | |
| !! | GTTTCTAGTGGGAAGCCCTC+TGG | + | chr8_3:9948027-9948046 | None:intergenic | 55.0% |
| TCTGGCAACTGAGGCAGTCA+AGG | - | chr8_3:9948739-9948758 | Msa1275800:CDS | 55.0% | |
| AACTGAGGCAGTCAAGGCGA+CGG | - | chr8_3:9948745-9948764 | Msa1275800:CDS | 55.0% | |
| GGAGAAGAAGCAGCAGCAGC+AGG | + | chr8_3:9945534-9945553 | None:intergenic | 60.0% | |
| ACAGGAGCAGCAGCAGGAAC+AGG | + | chr8_3:9945555-9945574 | None:intergenic | 60.0% | |
| TGGGTGTCTGGGTTCGATCC+TGG | - | chr8_3:9945981-9946000 | Msa1275800:intron | 60.0% | |
| TGTAGTCGTGGGCGTGAGAG+CGG | - | chr8_3:9946472-9946491 | Msa1275800:intron | 60.0% | |
| GTCGTAGTCCTGGGCATGAG+AGG | - | chr8_3:9946629-9946648 | Msa1275800:intron | 60.0% | |
| ! | GGTTGGCCCAATGGATGCAC+AGG | + | chr8_3:9948372-9948391 | None:intergenic | 60.0% |
| CCATTGGGCCAACCTTGCCA+CGG | - | chr8_3:9948378-9948397 | Msa1275800:intron | 60.0% | |
| CATTGGGCCAACCTTGCCAC+GGG | - | chr8_3:9948379-9948398 | Msa1275800:intron | 60.0% | |
| ATTGGGCCAACCTTGCCACG+GGG | - | chr8_3:9948380-9948399 | Msa1275800:intron | 60.0% | |
| ! | TTAAGAGCGCAGAGTCCCCG+TGG | + | chr8_3:9948398-9948417 | None:intergenic | 60.0% |
| ! | CCGTGGCAAGGTTGGCCCAA+TGG | + | chr8_3:9948381-9948400 | None:intergenic | 65.0% |
| CAGAGTCCCCGTGGCAAGGT+TGG | + | chr8_3:9948389-9948408 | None:intergenic | 65.0% | |
| AGCGCAGAGTCCCCGTGGCA+AGG | + | chr8_3:9948393-9948412 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 9945158 | 9949197 | 9945158 | ID=Msa1275800;Name=Msa1275800 |
| chr8_3 | mRNA | 9945158 | 9949197 | 9945158 | ID=Msa1275800-mRNA-1;Parent=Msa1275800;Name=Msa1275800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=72|1|1|1|1|1|6|233|304 |
| chr8_3 | exon | 9945158 | 9945422 | 9945158 | ID=Msa1275800-mRNA-1:exon:4127;Parent=Msa1275800-mRNA-1 |
| chr8_3 | exon | 9945519 | 9945834 | 9945519 | ID=Msa1275800-mRNA-1:exon:4126;Parent=Msa1275800-mRNA-1 |
| chr8_3 | exon | 9946746 | 9946829 | 9946746 | ID=Msa1275800-mRNA-1:exon:4125;Parent=Msa1275800-mRNA-1 |
| chr8_3 | exon | 9947113 | 9947197 | 9947113 | ID=Msa1275800-mRNA-1:exon:4124;Parent=Msa1275800-mRNA-1 |
| chr8_3 | exon | 9948640 | 9948887 | 9948640 | ID=Msa1275800-mRNA-1:exon:4123;Parent=Msa1275800-mRNA-1 |
| chr8_3 | exon | 9948976 | 9949197 | 9948976 | ID=Msa1275800-mRNA-1:exon:4122;Parent=Msa1275800-mRNA-1 |
| chr8_3 | five_prime_UTR | 9949126 | 9949197 | 9949126 | ID=Msa1275800-mRNA-1:five_prime_utr;Parent=Msa1275800-mRNA-1 |
| chr8_3 | CDS | 9948976 | 9949125 | 9948976 | ID=Msa1275800-mRNA-1:cds;Parent=Msa1275800-mRNA-1 |
| chr8_3 | CDS | 9948640 | 9948887 | 9948640 | ID=Msa1275800-mRNA-1:cds;Parent=Msa1275800-mRNA-1 |
| chr8_3 | CDS | 9947113 | 9947197 | 9947113 | ID=Msa1275800-mRNA-1:cds;Parent=Msa1275800-mRNA-1 |
| chr8_3 | CDS | 9946746 | 9946829 | 9946746 | ID=Msa1275800-mRNA-1:cds;Parent=Msa1275800-mRNA-1 |
| chr8_3 | CDS | 9945519 | 9945834 | 9945519 | ID=Msa1275800-mRNA-1:cds;Parent=Msa1275800-mRNA-1 |
| chr8_3 | CDS | 9945391 | 9945422 | 9945391 | ID=Msa1275800-mRNA-1:cds;Parent=Msa1275800-mRNA-1 |
| chr8_3 | three_prime_UTR | 9945158 | 9945390 | 9945158 | ID=Msa1275800-mRNA-1:three_prime_utr;Parent=Msa1275800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
