AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981060 MtrunA17_Chr6g0460991 99.130 115 1 0 1 115 1 115 8.17e-83 239
Msa0981060 MtrunA17_Chr1g0195701 50.435 115 56 1 1 114 1 115 1.63e-38 127
Msa0981060 MtrunA17_Chr7g0269271 50.000 108 53 1 1 107 1 108 8.28e-34 117
Msa0981060 MtrunA17_Chr6g0465301 45.833 120 62 2 1 117 1 120 1.89e-30 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981060 AT3G03773.3 74.359 117 29 1 1 117 1 116 2.34e-59 179
Msa0981060 AT3G03773.1 74.336 113 28 1 1 113 1 112 3.43e-58 177
Msa0981060 AT3G03773.2 74.336 113 28 1 1 113 55 166 1.62e-56 174
Msa0981060 AT4G02450.2 44.737 114 61 2 1 113 1 113 4.74e-30 108
Msa0981060 AT4G02450.1 44.737 114 61 2 1 113 1 113 4.85e-30 108

Find 32 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTACCTTCTCTGCTTCT+AGG 0.161269 6_4:+19823286 Msa0981060:CDS
CGCTGTGCCCAGAGAACTTC+TGG 0.233437 6_4:-19823189 None:intergenic
ATTTATTCCAATCAACTTTC+AGG 0.279329 6_4:-19823900 None:intergenic
AGCTTTAGCTTGGAACTTTA+CGG 0.318131 6_4:+19823327 Msa0981060:CDS
TGAAAGTTGATTGGAATAAA+TGG 0.325851 6_4:+19823902 Msa0981060:CDS
TAGGGTTGTAAAACTAAAAC+TGG 0.339082 6_4:+19823790 Msa0981060:intron
TTCTGTGAAGTGTGAGCCTC+AGG 0.376022 6_4:+19823260 Msa0981060:CDS
GTCGCCATCCAGAAGTTCTC+TGG 0.391191 6_4:+19823181 Msa0981060:intron
CACCATACCTGAAAGTTGAT+TGG 0.430676 6_4:+19823893 Msa0981060:CDS
AAGTTCCAAGCTAAAGCTAT+AGG 0.431266 6_4:-19823322 None:intergenic
CTGGGCACAGCGTTCTGGTA+AGG 0.451788 6_4:+19823200 Msa0981060:CDS
TTCCAATCAACTTTCAGGTA+TGG 0.454166 6_4:-19823895 None:intergenic
GACAAAGAGGTTGGTGGAAA+AGG 0.458246 6_4:+19823845 Msa0981060:CDS
GTTTACCTTCTCTGCTTCTA+GGG 0.475165 6_4:+19823287 Msa0981060:CDS
ACAGAAACATCCTTGGCATC+AGG 0.484531 6_4:-19823243 None:intergenic
TGAATCCTATAGCTTTAGCT+TGG 0.502986 6_4:+19823317 Msa0981060:CDS
TCAACTTTCAGGTATGGTGC+AGG 0.517519 6_4:-19823889 None:intergenic
TTGACTCTTTGATGTGTCGT+TGG 0.526952 6_4:-19822016 None:intergenic
CATCAGGTAGAGCAATAGTC+AGG 0.541944 6_4:-19823227 None:intergenic
ACACTTCACAGAAACATCCT+TGG 0.552534 6_4:-19823250 None:intergenic
TTCAGAAAGGACAAAGAGGT+TGG 0.555066 6_4:+19823836 Msa0981060:CDS
TCTCACTCAGCTCAAGAATG+AGG 0.568493 6_4:+19822062 Msa0981060:exon
AGAAAGGACAAAGAGGTTGG+TGG 0.573743 6_4:+19823839 Msa0981060:CDS
TCGCCATCCAGAAGTTCTCT+GGG 0.582774 6_4:+19823182 Msa0981060:CDS
TTGAACCCTAGAAGCAGAGA+AGG 0.586114 6_4:-19823292 None:intergenic
ATACTATGCTCAATTCAGAA+AGG 0.596991 6_4:+19823823 Msa0981060:CDS
GTGCCCAGAGAACTTCTGGA+TGG 0.615220 6_4:-19823185 None:intergenic
TCTGTGAAGTGTGAGCCTCA+GGG 0.627276 6_4:+19823261 Msa0981060:CDS
TATTGCTCTACCTGATGCCA+AGG 0.634051 6_4:+19823233 Msa0981060:CDS
TTACGGATCGATTCAACCTG+AGG 0.640397 6_4:+19823344 Msa0981060:CDS
TCAATTCAGAAAGGACAAAG+AGG 0.648365 6_4:+19823832 Msa0981060:CDS
GAGAAGGTAAACAAACCCTG+AGG 0.771648 6_4:-19823276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAAAAAAATTGAAAT+GGG - chr6_4:19822170-19822189 None:intergenic 10.0%
!! TAATAACAAAAAAATTGAAA+TGG - chr6_4:19822171-19822190 None:intergenic 10.0%
!!! TTTATTATGTAATTGAATTT+TGG + chr6_4:19822741-19822760 Msa0981060:intron 10.0%
!!! AATTAATTTGATTTGATTTT+TGG + chr6_4:19823144-19823163 Msa0981060:intron 10.0%
!! AATAACAAAAAAATTGAAAT+GGG - chr6_4:19822170-19822189 None:intergenic 10.0%
!! TAATAACAAAAAAATTGAAA+TGG - chr6_4:19822171-19822190 None:intergenic 10.0%
!!! TTTATTATGTAATTGAATTT+TGG + chr6_4:19822741-19822760 Msa0981060:intron 10.0%
!!! AATTAATTTGATTTGATTTT+TGG + chr6_4:19823144-19823163 Msa0981060:intron 10.0%
!!! TTTTCATCATTATTTTTACA+AGG - chr6_4:19822233-19822252 None:intergenic 15.0%
!! TTTATTAAGTAATTGAATAC+TGG + chr6_4:19822530-19822549 Msa0981060:intron 15.0%
!!! TTTTCATCATTATTTTTACA+AGG - chr6_4:19822233-19822252 None:intergenic 15.0%
!! TTTATTAAGTAATTGAATAC+TGG + chr6_4:19822530-19822549 Msa0981060:intron 15.0%
!! TTGAATTATTGCTTAATTTC+AGG + chr6_4:19822140-19822159 Msa0981060:intron 20.0%
!! TTTACATGTTACAAACAAAT+GGG - chr6_4:19822284-19822303 None:intergenic 20.0%
!! TTATTGAGTATATTGAATGT+TGG + chr6_4:19822329-19822348 Msa0981060:intron 20.0%
!!! TGCTGATATGATTTTAATAA+TGG + chr6_4:19822398-19822417 Msa0981060:intron 20.0%
!! CAGATTATTGAAACTTAATA+GGG - chr6_4:19822701-19822720 None:intergenic 20.0%
!! TCAGATTATTGAAACTTAAT+AGG - chr6_4:19822702-19822721 None:intergenic 20.0%
!! CAGAATATTGAAATGTTATA+GGG - chr6_4:19822902-19822921 None:intergenic 20.0%
!! TCAGAATATTGAAATGTTAT+AGG - chr6_4:19822903-19822922 None:intergenic 20.0%
!! TATCGAAATATTTGATATTG+CGG + chr6_4:19822970-19822989 Msa0981060:intron 20.0%
!! AAAAAAAAATCTTTCGACTA+GGG - chr6_4:19823120-19823139 None:intergenic 20.0%
!! AAAAAAAAAATCTTTCGACT+AGG - chr6_4:19823121-19823140 None:intergenic 20.0%
!!! ACGTAATATAAAGGTTTTAA+AGG + chr6_4:19823461-19823480 Msa0981060:intron 20.0%
!! TTGAATTATTGCTTAATTTC+AGG + chr6_4:19822140-19822159 Msa0981060:intron 20.0%
!! TTTACATGTTACAAACAAAT+GGG - chr6_4:19822284-19822303 None:intergenic 20.0%
!! TTATTGAGTATATTGAATGT+TGG + chr6_4:19822329-19822348 Msa0981060:intron 20.0%
!!! TGCTGATATGATTTTAATAA+TGG + chr6_4:19822398-19822417 Msa0981060:intron 20.0%
!! CAGATTATTGAAACTTAATA+GGG - chr6_4:19822701-19822720 None:intergenic 20.0%
!! TCAGATTATTGAAACTTAAT+AGG - chr6_4:19822702-19822721 None:intergenic 20.0%
!! CAGAATATTGAAATGTTATA+GGG - chr6_4:19822902-19822921 None:intergenic 20.0%
!! TCAGAATATTGAAATGTTAT+AGG - chr6_4:19822903-19822922 None:intergenic 20.0%
!! TATCGAAATATTTGATATTG+CGG + chr6_4:19822970-19822989 Msa0981060:intron 20.0%
!! AAAAAAAAATCTTTCGACTA+GGG - chr6_4:19823120-19823139 None:intergenic 20.0%
!! AAAAAAAAAATCTTTCGACT+AGG - chr6_4:19823121-19823140 None:intergenic 20.0%
!!! ACGTAATATAAAGGTTTTAA+AGG + chr6_4:19823461-19823480 Msa0981060:intron 20.0%
!! TTACAAGGATGTGATTTTTA+TGG - chr6_4:19822218-19822237 None:intergenic 25.0%
! CTTTACATGTTACAAACAAA+TGG - chr6_4:19822285-19822304 None:intergenic 25.0%
!! AATTGTGGTTTTTGATATTG+TGG + chr6_4:19822357-19822376 Msa0981060:intron 25.0%
! CAGAATATTGAAACTCTATA+GGG - chr6_4:19822500-19822519 None:intergenic 25.0%
! CTATAGAGTTTCAATATTCT+GGG + chr6_4:19822499-19822518 Msa0981060:intron 25.0%
!!! TGAATACTGGTTTTAAATCA+TGG + chr6_4:19822543-19822562 Msa0981060:intron 25.0%
! AATCATGGTATTTGATATTG+CGG + chr6_4:19822558-19822577 Msa0981060:intron 25.0%
! ATATTCAAATGTTGTTGACA+CGG + chr6_4:19822587-19822606 Msa0981060:intron 25.0%
!!! TGAATTTTGGTTTTGAAATG+TGG + chr6_4:19822754-19822773 Msa0981060:intron 25.0%
!! AAATGTGGTTTTTGATATTG+TGG + chr6_4:19822769-19822788 Msa0981060:intron 25.0%
! TTGATTATGTACATACTTTG+TGG + chr6_4:19823413-19823432 Msa0981060:intron 25.0%
! TATATCCTAGTTTCAAATTG+TGG + chr6_4:19823437-19823456 Msa0981060:intron 25.0%
! AATTGTGGTACGTAATATAA+AGG + chr6_4:19823452-19823471 Msa0981060:intron 25.0%
!!! TGCATTTTTTCACATTATCA+AGG + chr6_4:19823527-19823546 Msa0981060:intron 25.0%
! AACTAAAACAATTCGTAAAG+TGG - chr6_4:19823703-19823722 None:intergenic 25.0%
!!! TTCCTTATCATGTTTTGAAA+AGG + chr6_4:19823729-19823748 Msa0981060:intron 25.0%
!! AACCTTTTCAAAACATGATA+AGG - chr6_4:19823734-19823753 None:intergenic 25.0%
!!! TTATCATGTTTTGAAAAGGT+TGG + chr6_4:19823733-19823752 Msa0981060:intron 25.0%
! ATATTGTCATTGTTGTATCT+AGG + chr6_4:19823771-19823790 Msa0981060:intron 25.0%
! TATTGTCATTGTTGTATCTA+GGG + chr6_4:19823772-19823791 Msa0981060:intron 25.0%
! ATTTATTCCAATCAACTTTC+AGG - chr6_4:19823903-19823922 None:intergenic 25.0%
!! TGAAAGTTGATTGGAATAAA+TGG + chr6_4:19823902-19823921 Msa0981060:CDS 25.0%
!! TTACAAGGATGTGATTTTTA+TGG - chr6_4:19822218-19822237 None:intergenic 25.0%
! CTTTACATGTTACAAACAAA+TGG - chr6_4:19822285-19822304 None:intergenic 25.0%
!! AATTGTGGTTTTTGATATTG+TGG + chr6_4:19822357-19822376 Msa0981060:intron 25.0%
! CAGAATATTGAAACTCTATA+GGG - chr6_4:19822500-19822519 None:intergenic 25.0%
! CTATAGAGTTTCAATATTCT+GGG + chr6_4:19822499-19822518 Msa0981060:intron 25.0%
!!! TGAATACTGGTTTTAAATCA+TGG + chr6_4:19822543-19822562 Msa0981060:intron 25.0%
! AATCATGGTATTTGATATTG+CGG + chr6_4:19822558-19822577 Msa0981060:intron 25.0%
! ATATTCAAATGTTGTTGACA+CGG + chr6_4:19822587-19822606 Msa0981060:intron 25.0%
!!! TGAATTTTGGTTTTGAAATG+TGG + chr6_4:19822754-19822773 Msa0981060:intron 25.0%
!! AAATGTGGTTTTTGATATTG+TGG + chr6_4:19822769-19822788 Msa0981060:intron 25.0%
! TTGATTATGTACATACTTTG+TGG + chr6_4:19823413-19823432 Msa0981060:intron 25.0%
! TATATCCTAGTTTCAAATTG+TGG + chr6_4:19823437-19823456 Msa0981060:intron 25.0%
! AATTGTGGTACGTAATATAA+AGG + chr6_4:19823452-19823471 Msa0981060:intron 25.0%
!!! TGCATTTTTTCACATTATCA+AGG + chr6_4:19823527-19823546 Msa0981060:intron 25.0%
! AACTAAAACAATTCGTAAAG+TGG - chr6_4:19823703-19823722 None:intergenic 25.0%
!!! TTCCTTATCATGTTTTGAAA+AGG + chr6_4:19823729-19823748 Msa0981060:intron 25.0%
!! AACCTTTTCAAAACATGATA+AGG - chr6_4:19823734-19823753 None:intergenic 25.0%
!!! TTATCATGTTTTGAAAAGGT+TGG + chr6_4:19823733-19823752 Msa0981060:intron 25.0%
! ATATTGTCATTGTTGTATCT+AGG + chr6_4:19823771-19823790 Msa0981060:intron 25.0%
! TATTGTCATTGTTGTATCTA+GGG + chr6_4:19823772-19823791 Msa0981060:intron 25.0%
! ATTTATTCCAATCAACTTTC+AGG - chr6_4:19823903-19823922 None:intergenic 25.0%
!! TGAAAGTTGATTGGAATAAA+TGG + chr6_4:19823902-19823921 Msa0981060:CDS 25.0%
TTCAGTGAAAGTAAAACGAA+GGG - chr6_4:19822098-19822117 None:intergenic 30.0%
TTTCAGTGAAAGTAAAACGA+AGG - chr6_4:19822099-19822118 None:intergenic 30.0%
!!! TGAATGTTGGTTTTGAATTG+TGG + chr6_4:19822342-19822361 Msa0981060:intron 30.0%
CCAGAATATTGAAACTCTAT+AGG - chr6_4:19822501-19822520 None:intergenic 30.0%
CCTATAGAGTTTCAATATTC+TGG + chr6_4:19822498-19822517 Msa0981060:intron 30.0%
! GTGAGTGATCTTTTCTTAAA+TGG + chr6_4:19823366-19823385 Msa0981060:intron 30.0%
TGAAAAAATGCAGACAAATG+TGG - chr6_4:19823519-19823538 None:intergenic 30.0%
TATGAAAAACTTTCATAGCC+CGG - chr6_4:19823597-19823616 None:intergenic 30.0%
AAAACAATTCGTAAAGTGGA+CGG - chr6_4:19823699-19823718 None:intergenic 30.0%
ACAATGACAATATTTCAGAC+AGG - chr6_4:19823764-19823783 None:intergenic 30.0%
TAGGGTTGTAAAACTAAAAC+TGG + chr6_4:19823790-19823809 Msa0981060:intron 30.0%
ATACTATGCTCAATTCAGAA+AGG + chr6_4:19823823-19823842 Msa0981060:CDS 30.0%
TTCAGTGAAAGTAAAACGAA+GGG - chr6_4:19822098-19822117 None:intergenic 30.0%
TTTCAGTGAAAGTAAAACGA+AGG - chr6_4:19822099-19822118 None:intergenic 30.0%
!!! TGAATGTTGGTTTTGAATTG+TGG + chr6_4:19822342-19822361 Msa0981060:intron 30.0%
CCAGAATATTGAAACTCTAT+AGG - chr6_4:19822501-19822520 None:intergenic 30.0%
CCTATAGAGTTTCAATATTC+TGG + chr6_4:19822498-19822517 Msa0981060:intron 30.0%
! GTGAGTGATCTTTTCTTAAA+TGG + chr6_4:19823366-19823385 Msa0981060:intron 30.0%
TGAAAAAATGCAGACAAATG+TGG - chr6_4:19823519-19823538 None:intergenic 30.0%
TATGAAAAACTTTCATAGCC+CGG - chr6_4:19823597-19823616 None:intergenic 30.0%
AAAACAATTCGTAAAGTGGA+CGG - chr6_4:19823699-19823718 None:intergenic 30.0%
ACAATGACAATATTTCAGAC+AGG - chr6_4:19823764-19823783 None:intergenic 30.0%
TAGGGTTGTAAAACTAAAAC+TGG + chr6_4:19823790-19823809 Msa0981060:intron 30.0%
ATACTATGCTCAATTCAGAA+AGG + chr6_4:19823823-19823842 Msa0981060:CDS 30.0%
TGAAAGTAAAACGAAGGGAA+AGG - chr6_4:19822093-19822112 None:intergenic 35.0%
! TTTTAATAATGGCCGTGTTG+TGG + chr6_4:19822409-19822428 Msa0981060:intron 35.0%
TTGTGGAGAATTGTGATCAA+AGG + chr6_4:19822786-19822805 Msa0981060:intron 35.0%
! AAGAATTTTGAACCGCAACA+CGG - chr6_4:19822836-19822855 None:intergenic 35.0%
TTGCGGAAAATCACATTCAA+AGG + chr6_4:19822987-19823006 Msa0981060:intron 35.0%
AAAATCACATTCAAAGGCAG+CGG + chr6_4:19822993-19823012 Msa0981060:intron 35.0%
!! TGAATCCTATAGCTTTAGCT+TGG + chr6_4:19823317-19823336 Msa0981060:CDS 35.0%
AAGTTCCAAGCTAAAGCTAT+AGG - chr6_4:19823325-19823344 None:intergenic 35.0%
!! AGCTTTAGCTTGGAACTTTA+CGG + chr6_4:19823327-19823346 Msa0981060:CDS 35.0%
! ACGTACCACAATTTGAAACT+AGG - chr6_4:19823445-19823464 None:intergenic 35.0%
CAATCACAATGTAGTTGAAG+AGG - chr6_4:19823487-19823506 None:intergenic 35.0%
! CCATTTTACCAATTGTTGTC+CGG + chr6_4:19823575-19823594 Msa0981060:intron 35.0%
! CATTTTACCAATTGTTGTCC+GGG + chr6_4:19823576-19823595 Msa0981060:intron 35.0%
! TGAAAAAGTGCAGACAAATG+TGG - chr6_4:19823644-19823663 None:intergenic 35.0%
AAACAATTCGTAAAGTGGAC+GGG - chr6_4:19823698-19823717 None:intergenic 35.0%
!!! CATGTTTTGAAAAGGTTGGA+TGG + chr6_4:19823737-19823756 Msa0981060:intron 35.0%
TCAATTCAGAAAGGACAAAG+AGG + chr6_4:19823832-19823851 Msa0981060:CDS 35.0%
! TTCCAATCAACTTTCAGGTA+TGG - chr6_4:19823898-19823917 None:intergenic 35.0%
TGAAAGTAAAACGAAGGGAA+AGG - chr6_4:19822093-19822112 None:intergenic 35.0%
! TTTTAATAATGGCCGTGTTG+TGG + chr6_4:19822409-19822428 Msa0981060:intron 35.0%
TTGTGGAGAATTGTGATCAA+AGG + chr6_4:19822786-19822805 Msa0981060:intron 35.0%
! AAGAATTTTGAACCGCAACA+CGG - chr6_4:19822836-19822855 None:intergenic 35.0%
TTGCGGAAAATCACATTCAA+AGG + chr6_4:19822987-19823006 Msa0981060:intron 35.0%
AAAATCACATTCAAAGGCAG+CGG + chr6_4:19822993-19823012 Msa0981060:intron 35.0%
!! TGAATCCTATAGCTTTAGCT+TGG + chr6_4:19823317-19823336 Msa0981060:CDS 35.0%
AAGTTCCAAGCTAAAGCTAT+AGG - chr6_4:19823325-19823344 None:intergenic 35.0%
!! AGCTTTAGCTTGGAACTTTA+CGG + chr6_4:19823327-19823346 Msa0981060:CDS 35.0%
! ACGTACCACAATTTGAAACT+AGG - chr6_4:19823445-19823464 None:intergenic 35.0%
CAATCACAATGTAGTTGAAG+AGG - chr6_4:19823487-19823506 None:intergenic 35.0%
! CCATTTTACCAATTGTTGTC+CGG + chr6_4:19823575-19823594 Msa0981060:intron 35.0%
! CATTTTACCAATTGTTGTCC+GGG + chr6_4:19823576-19823595 Msa0981060:intron 35.0%
! TGAAAAAGTGCAGACAAATG+TGG - chr6_4:19823644-19823663 None:intergenic 35.0%
AAACAATTCGTAAAGTGGAC+GGG - chr6_4:19823698-19823717 None:intergenic 35.0%
!!! CATGTTTTGAAAAGGTTGGA+TGG + chr6_4:19823737-19823756 Msa0981060:intron 35.0%
TCAATTCAGAAAGGACAAAG+AGG + chr6_4:19823832-19823851 Msa0981060:CDS 35.0%
! TTCCAATCAACTTTCAGGTA+TGG - chr6_4:19823898-19823917 None:intergenic 35.0%
TTGTGGAGAATCACGATCAA+AGG + chr6_4:19822374-19822393 Msa0981060:intron 40.0%
TGTTGACACGGTTTCAATGA+TGG + chr6_4:19822599-19822618 Msa0981060:intron 40.0%
TTTCAATGATGGTCGTGTTG+TGG + chr6_4:19822610-19822629 Msa0981060:intron 40.0%
ATCAGAAACTGTTGATGTCG+CGG + chr6_4:19822643-19822662 Msa0981060:intron 40.0%
!!! TGCTGATATGGTTTTGACGA+TGG + chr6_4:19822810-19822829 Msa0981060:intron 40.0%
CTTCAATGAAGTCTGTGTTC+AGG + chr6_4:19823022-19823041 Msa0981060:intron 40.0%
AGTCTAAGTCGCAACATCAA+AGG - chr6_4:19823072-19823091 None:intergenic 40.0%
ACACTTCACAGAAACATCCT+TGG - chr6_4:19823253-19823272 None:intergenic 40.0%
TGTTTACCTTCTCTGCTTCT+AGG + chr6_4:19823286-19823305 Msa0981060:CDS 40.0%
GTTTACCTTCTCTGCTTCTA+GGG + chr6_4:19823287-19823306 Msa0981060:CDS 40.0%
AAGAAAAGATCACTCACCTC+AGG - chr6_4:19823363-19823382 None:intergenic 40.0%
CTACATTGTGATTGCAACTG+CGG + chr6_4:19823493-19823512 Msa0981060:intron 40.0%
CCGGACAACAATTGGTAAAA+TGG - chr6_4:19823578-19823597 None:intergenic 40.0%
CCACATTGTGATTGCAATTG+CGG + chr6_4:19823618-19823637 Msa0981060:intron 40.0%
TTCAGAAAGGACAAAGAGGT+TGG + chr6_4:19823836-19823855 Msa0981060:CDS 40.0%
! CACCATACCTGAAAGTTGAT+TGG + chr6_4:19823893-19823912 Msa0981060:CDS 40.0%
TTGTGGAGAATCACGATCAA+AGG + chr6_4:19822374-19822393 Msa0981060:intron 40.0%
TGTTGACACGGTTTCAATGA+TGG + chr6_4:19822599-19822618 Msa0981060:intron 40.0%
TTTCAATGATGGTCGTGTTG+TGG + chr6_4:19822610-19822629 Msa0981060:intron 40.0%
ATCAGAAACTGTTGATGTCG+CGG + chr6_4:19822643-19822662 Msa0981060:intron 40.0%
!!! TGCTGATATGGTTTTGACGA+TGG + chr6_4:19822810-19822829 Msa0981060:intron 40.0%
CTTCAATGAAGTCTGTGTTC+AGG + chr6_4:19823022-19823041 Msa0981060:intron 40.0%
AGTCTAAGTCGCAACATCAA+AGG - chr6_4:19823072-19823091 None:intergenic 40.0%
ACACTTCACAGAAACATCCT+TGG - chr6_4:19823253-19823272 None:intergenic 40.0%
TGTTTACCTTCTCTGCTTCT+AGG + chr6_4:19823286-19823305 Msa0981060:CDS 40.0%
GTTTACCTTCTCTGCTTCTA+GGG + chr6_4:19823287-19823306 Msa0981060:CDS 40.0%
AAGAAAAGATCACTCACCTC+AGG - chr6_4:19823363-19823382 None:intergenic 40.0%
CTACATTGTGATTGCAACTG+CGG + chr6_4:19823493-19823512 Msa0981060:intron 40.0%
CCGGACAACAATTGGTAAAA+TGG - chr6_4:19823578-19823597 None:intergenic 40.0%
CCACATTGTGATTGCAATTG+CGG + chr6_4:19823618-19823637 Msa0981060:intron 40.0%
TTCAGAAAGGACAAAGAGGT+TGG + chr6_4:19823836-19823855 Msa0981060:CDS 40.0%
! CACCATACCTGAAAGTTGAT+TGG + chr6_4:19823893-19823912 Msa0981060:CDS 40.0%
TCTCACTCAGCTCAAGAATG+AGG + chr6_4:19822062-19822081 Msa0981060:exon 45.0%
ATGTCTCTGCAACCACAACA+CGG - chr6_4:19822424-19822443 None:intergenic 45.0%
ATCAAAACCCTCTGATGTCG+CGG + chr6_4:19822442-19822461 Msa0981060:intron 45.0%
GTGATCAAAGGCTGCTGATA+TGG + chr6_4:19822798-19822817 Msa0981060:intron 45.0%
CATCAGGTAGAGCAATAGTC+AGG - chr6_4:19823230-19823249 None:intergenic 45.0%
TATTGCTCTACCTGATGCCA+AGG + chr6_4:19823233-19823252 Msa0981060:CDS 45.0%
ACAGAAACATCCTTGGCATC+AGG - chr6_4:19823246-19823265 None:intergenic 45.0%
GAGAAGGTAAACAAACCCTG+AGG - chr6_4:19823279-19823298 None:intergenic 45.0%
TTGAACCCTAGAAGCAGAGA+AGG - chr6_4:19823295-19823314 None:intergenic 45.0%
! TTACGGATCGATTCAACCTG+AGG + chr6_4:19823344-19823363 Msa0981060:CDS 45.0%
TTCATAGCCCGGACAACAAT+TGG - chr6_4:19823586-19823605 None:intergenic 45.0%
CCGCAATTGCAATCACAATG+TGG - chr6_4:19823621-19823640 None:intergenic 45.0%
AGAAAGGACAAAGAGGTTGG+TGG + chr6_4:19823839-19823858 Msa0981060:CDS 45.0%
!! GACAAAGAGGTTGGTGGAAA+AGG + chr6_4:19823845-19823864 Msa0981060:CDS 45.0%
! TCAACTTTCAGGTATGGTGC+AGG - chr6_4:19823892-19823911 None:intergenic 45.0%
TCTCACTCAGCTCAAGAATG+AGG + chr6_4:19822062-19822081 Msa0981060:exon 45.0%
ATGTCTCTGCAACCACAACA+CGG - chr6_4:19822424-19822443 None:intergenic 45.0%
ATCAAAACCCTCTGATGTCG+CGG + chr6_4:19822442-19822461 Msa0981060:intron 45.0%
GTGATCAAAGGCTGCTGATA+TGG + chr6_4:19822798-19822817 Msa0981060:intron 45.0%
CATCAGGTAGAGCAATAGTC+AGG - chr6_4:19823230-19823249 None:intergenic 45.0%
TATTGCTCTACCTGATGCCA+AGG + chr6_4:19823233-19823252 Msa0981060:CDS 45.0%
ACAGAAACATCCTTGGCATC+AGG - chr6_4:19823246-19823265 None:intergenic 45.0%
GAGAAGGTAAACAAACCCTG+AGG - chr6_4:19823279-19823298 None:intergenic 45.0%
TTGAACCCTAGAAGCAGAGA+AGG - chr6_4:19823295-19823314 None:intergenic 45.0%
! TTACGGATCGATTCAACCTG+AGG + chr6_4:19823344-19823363 Msa0981060:CDS 45.0%
TTCATAGCCCGGACAACAAT+TGG - chr6_4:19823586-19823605 None:intergenic 45.0%
CCGCAATTGCAATCACAATG+TGG - chr6_4:19823621-19823640 None:intergenic 45.0%
AGAAAGGACAAAGAGGTTGG+TGG + chr6_4:19823839-19823858 Msa0981060:CDS 45.0%
!! GACAAAGAGGTTGGTGGAAA+AGG + chr6_4:19823845-19823864 Msa0981060:CDS 45.0%
! TCAACTTTCAGGTATGGTGC+AGG - chr6_4:19823892-19823911 None:intergenic 45.0%
!! ATAAAAATAAATTGTTTAAA+AGG - chr6_4:19822726-19822745 None:intergenic 5.0%
!! ATAAAAATAAATTGTTTAAA+AGG - chr6_4:19822726-19822745 None:intergenic 5.0%
! TTTTGACGATGGCCGTGTTG+CGG + chr6_4:19822821-19822840 Msa0981060:intron 50.0%
ACATTCAAAGGCAGCGGACA+CGG + chr6_4:19822999-19823018 Msa0981060:intron 50.0%
TTCCAATGTCTCTGCAGTCG+CGG - chr6_4:19823048-19823067 None:intergenic 50.0%
GCGACTTAGACTACAGTTCG+CGG + chr6_4:19823080-19823099 Msa0981060:intron 50.0%
TCGCCATCCAGAAGTTCTCT+GGG + chr6_4:19823182-19823201 Msa0981060:CDS 50.0%
TTCTGTGAAGTGTGAGCCTC+AGG + chr6_4:19823260-19823279 Msa0981060:CDS 50.0%
TCTGTGAAGTGTGAGCCTCA+GGG + chr6_4:19823261-19823280 Msa0981060:CDS 50.0%
! TTTTGACGATGGCCGTGTTG+CGG + chr6_4:19822821-19822840 Msa0981060:intron 50.0%
ACATTCAAAGGCAGCGGACA+CGG + chr6_4:19822999-19823018 Msa0981060:intron 50.0%
TTCCAATGTCTCTGCAGTCG+CGG - chr6_4:19823048-19823067 None:intergenic 50.0%
GCGACTTAGACTACAGTTCG+CGG + chr6_4:19823080-19823099 Msa0981060:intron 50.0%
TCGCCATCCAGAAGTTCTCT+GGG + chr6_4:19823182-19823201 Msa0981060:CDS 50.0%
TTCTGTGAAGTGTGAGCCTC+AGG + chr6_4:19823260-19823279 Msa0981060:CDS 50.0%
TCTGTGAAGTGTGAGCCTCA+GGG + chr6_4:19823261-19823280 Msa0981060:CDS 50.0%
ATCTGAGCCGCGACATCAGA+GGG - chr6_4:19822452-19822471 None:intergenic 55.0%
AATCTGAGCCGCGACATCAG+AGG - chr6_4:19822453-19822472 None:intergenic 55.0%
CGCGGCTCATATTGTAGTCG+AGG + chr6_4:19822661-19822680 Msa0981060:intron 55.0%
CTCGACTACAAGCTGAGCTG+TGG - chr6_4:19822864-19822883 None:intergenic 55.0%
CACAGCTCAGCTTGTAGTCG+AGG + chr6_4:19822862-19822881 Msa0981060:intron 55.0%
GTCGCCATCCAGAAGTTCTC+TGG + chr6_4:19823181-19823200 Msa0981060:intron 55.0%
GTGCCCAGAGAACTTCTGGA+TGG - chr6_4:19823188-19823207 None:intergenic 55.0%
ATCTGAGCCGCGACATCAGA+GGG - chr6_4:19822452-19822471 None:intergenic 55.0%
AATCTGAGCCGCGACATCAG+AGG - chr6_4:19822453-19822472 None:intergenic 55.0%
CGCGGCTCATATTGTAGTCG+AGG + chr6_4:19822661-19822680 Msa0981060:intron 55.0%
CTCGACTACAAGCTGAGCTG+TGG - chr6_4:19822864-19822883 None:intergenic 55.0%
CACAGCTCAGCTTGTAGTCG+AGG + chr6_4:19822862-19822881 Msa0981060:intron 55.0%
GTCGCCATCCAGAAGTTCTC+TGG + chr6_4:19823181-19823200 Msa0981060:intron 55.0%
GTGCCCAGAGAACTTCTGGA+TGG - chr6_4:19823188-19823207 None:intergenic 55.0%
CGCGGCTCAGATTGTAGTCG+AGG + chr6_4:19822460-19822479 Msa0981060:intron 60.0%
CGCTGTGCCCAGAGAACTTC+TGG - chr6_4:19823192-19823211 None:intergenic 60.0%
GTTCTCTGGGCACAGCGTTC+TGG + chr6_4:19823195-19823214 Msa0981060:CDS 60.0%
CTGGGCACAGCGTTCTGGTA+AGG + chr6_4:19823200-19823219 Msa0981060:CDS 60.0%
CGCGGCTCAGATTGTAGTCG+AGG + chr6_4:19822460-19822479 Msa0981060:intron 60.0%
CGCTGTGCCCAGAGAACTTC+TGG - chr6_4:19823192-19823211 None:intergenic 60.0%
GTTCTCTGGGCACAGCGTTC+TGG + chr6_4:19823195-19823214 Msa0981060:CDS 60.0%
CTGGGCACAGCGTTCTGGTA+AGG + chr6_4:19823200-19823219 Msa0981060:CDS 60.0%
GGCCGCGACTGCAGAGACAT+TGG + chr6_4:19823043-19823062 Msa0981060:intron 65.0%
GGCCGCGACTGCAGAGACAT+TGG + chr6_4:19823043-19823062 Msa0981060:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 19822018 19823969 19822018 ID=Msa0981060;Name=Msa0981060
chr6_4 mRNA 19822018 19823969 19822018 ID=Msa0981060-mRNA-1;Parent=Msa0981060;Name=Msa0981060-mRNA-1;_AED=0.13;_eAED=0.13;_QI=61|1|0.66|1|1|1|3|0|121
chr6_4 exon 19822018 19822083 19822018 ID=Msa0981060-mRNA-1:exon:6156;Parent=Msa0981060-mRNA-1
chr6_4 exon 19823182 19823365 19823182 ID=Msa0981060-mRNA-1:exon:6157;Parent=Msa0981060-mRNA-1
chr6_4 exon 19823793 19823969 19823793 ID=Msa0981060-mRNA-1:exon:6158;Parent=Msa0981060-mRNA-1
chr6_4 five_prime_UTR 19822018 19822078 19822018 ID=Msa0981060-mRNA-1:five_prime_utr;Parent=Msa0981060-mRNA-1
chr6_4 CDS 19822079 19822083 19822079 ID=Msa0981060-mRNA-1:cds;Parent=Msa0981060-mRNA-1
chr6_4 CDS 19823182 19823365 19823182 ID=Msa0981060-mRNA-1:cds;Parent=Msa0981060-mRNA-1
chr6_4 CDS 19823793 19823969 19823793 ID=Msa0981060-mRNA-1:cds;Parent=Msa0981060-mRNA-1
Gene Sequence

>Msa0981060

ATGAGTCGCCATCCAGAAGTTCTCTGGGCACAGCGTTCTGGTAAGGTTTACCTGACTATTGCTCTACCTGATGCCAAGGATGTTTCTGTGAAGTGTGAGCCTCAGGGTTTGTTTACCTTCTCTGCTTCTAGGGTTCAACATGAATCCTATAGCTTTAGCTTGGAACTTTACGGATCGATTCAACCTGAGGGTTGTAAAACTAAAACTGGCTCAAGAAACATACTATGCTCAATTCAGAAAGGACAAAGAGGTTGGTGGAAAAGGTTACTGAAGTCTGAAGAGAAACCTGCACCATACCTGAAAGTTGATTGGAATAAATGGTGTGATGAAGATGAAGAGTCAGAATGTAAGCTTTCGTTATCATAA

Protein sequence

>Msa0981060

MSRHPEVLWAQRSGKVYLTIALPDAKDVSVKCEPQGLFTFSASRVQHESYSFSLELYGSIQPEGCKTKTGSRNILCSIQKGQRGWWKRLLKSEEKPAPYLKVDWNKWCDEDEESECKLSLS*