Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275860 | sp|P38414|LOX1_LENCU | 71.968 | 503 | 137 | 2 | 1 | 502 | 367 | 866 | 0.0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275860 | G7LIY4 | 96.016 | 502 | 20 | 0 | 1 | 502 | 322 | 823 | 0.0 | 1004 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014590 | Msa1275860 | 0.812628 | 3.853131e-51 | -8.615850e-47 |
| Msa0048950 | Msa1275860 | 0.804348 | 2.255717e-49 | -8.615850e-47 |
| Msa0074620 | Msa1275860 | 0.806607 | 7.577934e-50 | -8.615850e-47 |
| Msa0120050 | Msa1275860 | 0.820690 | 6.002223e-53 | -8.615850e-47 |
| Msa0631700 | Msa1275860 | 0.811488 | 6.827163e-51 | -8.615850e-47 |
| Msa0643840 | Msa1275860 | 0.806633 | 7.480597e-50 | -8.615850e-47 |
| Msa0665830 | Msa1275860 | 0.814614 | 1.408761e-51 | -8.615850e-47 |
| Msa0670360 | Msa1275860 | 0.823277 | 1.510741e-53 | -8.615850e-47 |
| Msa0678620 | Msa1275860 | 0.818539 | 1.859550e-52 | -8.615850e-47 |
| Msa0727480 | Msa1275860 | 0.825832 | 3.780132e-54 | -8.615850e-47 |
| Msa0768670 | Msa1275860 | 0.838429 | 2.891055e-57 | -8.615850e-47 |
| Msa0768720 | Msa1275860 | 0.842869 | 1.986924e-58 | -8.615850e-47 |
| Msa0777250 | Msa1275860 | 0.806884 | 6.623755e-50 | -8.615850e-47 |
| Msa0814230 | Msa1275860 | 0.814396 | 1.573588e-51 | -8.615850e-47 |
| Msa0140270 | Msa1275860 | 0.809451 | 1.880355e-50 | -8.615850e-47 |
| Msa0160580 | Msa1275860 | 0.804802 | 1.813667e-49 | -8.615850e-47 |
| Msa0163340 | Msa1275860 | 0.812723 | 3.673533e-51 | -8.615850e-47 |
| Msa0209060 | Msa1275860 | 0.803742 | 3.014631e-49 | -8.615850e-47 |
| Msa1233640 | Msa1275860 | 0.879897 | 8.559570e-70 | -8.615850e-47 |
| Msa1269050 | Msa1275860 | 0.809592 | 1.753116e-50 | -8.615850e-47 |
| Msa1275860 | Msa1275870 | 0.815590 | 8.553711e-52 | -8.615850e-47 |
| Msa1275860 | Msa1300610 | 0.827070 | 1.916059e-54 | -8.615850e-47 |
| Msa1275860 | Msa1314040 | 0.908905 | 1.024643e-81 | -8.615850e-47 |
| Msa1275860 | Msa1314050 | 0.807448 | 5.028772e-50 | -8.615850e-47 |
| Msa1275860 | Msa1319030 | 0.809132 | 2.200517e-50 | -8.615850e-47 |
| Msa1275860 | Msa1323120 | 0.804534 | 2.062585e-49 | -8.615850e-47 |
| Msa1275860 | Msa1329740 | 0.801694 | 7.980686e-49 | -8.615850e-47 |
| Msa1275860 | Msa1411550 | 0.804923 | 1.711075e-49 | -8.615850e-47 |
| Msa1275860 | Msa1431160 | 0.800151 | 1.648871e-48 | -8.615850e-47 |
| Msa1275860 | Msa1445900 | 0.815709 | 8.047051e-52 | -8.615850e-47 |
| Msa1275860 | Msa1459610 | 0.850129 | 2.073499e-60 | -8.615850e-47 |
| Msa0366510 | Msa1275860 | 0.809620 | 1.729483e-50 | -8.615850e-47 |
| Msa0374040 | Msa1275860 | 0.802573 | 5.261867e-49 | -8.615850e-47 |
| Msa0374130 | Msa1275860 | 0.800973 | 1.120806e-48 | -8.615850e-47 |
| Msa0396700 | Msa1275860 | 0.801433 | 9.024250e-49 | -8.615850e-47 |
| Msa0414480 | Msa1275860 | 0.820699 | 5.975843e-53 | -8.615850e-47 |
| Msa0987640 | Msa1275860 | 0.819943 | 8.904309e-53 | -8.615850e-47 |
| Msa0993450 | Msa1275860 | 0.802757 | 4.821830e-49 | -8.615850e-47 |
| Msa0996980 | Msa1275860 | 0.805773 | 1.135522e-49 | -8.615850e-47 |
| Msa1003110 | Msa1275860 | 0.803558 | 3.292252e-49 | -8.615850e-47 |
| Msa1021620 | Msa1275860 | 0.815553 | 8.713802e-52 | -8.615850e-47 |
| Msa1022490 | Msa1275860 | 0.814285 | 1.665587e-51 | -8.615850e-47 |
| Msa1022510 | Msa1275860 | 0.810212 | 1.289557e-50 | -8.615850e-47 |
| Msa1061670 | Msa1275860 | 0.842360 | 2.712488e-58 | -8.615850e-47 |
| Msa1064940 | Msa1275860 | 0.808205 | 3.471678e-50 | -8.615850e-47 |
| Msa1087380 | Msa1275860 | 0.805121 | 1.555448e-49 | -8.615850e-47 |
| Msa1106680 | Msa1275860 | 0.815522 | 8.854764e-52 | -8.615850e-47 |
| Msa1106960 | Msa1275860 | 0.840247 | 9.756653e-58 | -8.615850e-47 |
| Msa0261400 | Msa1275860 | 0.807513 | 4.873571e-50 | -8.615850e-47 |
| Msa0278940 | Msa1275860 | 0.805800 | 1.120468e-49 | -8.615850e-47 |
| Msa0288540 | Msa1275860 | 0.801705 | 7.937255e-49 | -8.615850e-47 |
| Msa0328090 | Msa1275860 | 0.803481 | 3.415236e-49 | -8.615850e-47 |
| Msa0336630 | Msa1275860 | 0.812469 | 4.174341e-51 | -8.615850e-47 |
| Msa1179170 | Msa1275860 | 0.867847 | 1.011959e-65 | -8.615850e-47 |
| Msa0491800 | Msa1275860 | 0.801350 | 9.383959e-49 | -8.615850e-47 |
| Msa0531030 | Msa1275860 | 0.804291 | 2.318177e-49 | -8.615850e-47 |
| Msa0535570 | Msa1275860 | 0.818668 | 1.738649e-52 | -8.615850e-47 |
| Msa0543740 | Msa1275860 | 0.827161 | 1.822786e-54 | -8.615850e-47 |
| Msa0549170 | Msa1275860 | 0.814842 | 1.253768e-51 | -8.615850e-47 |
| Msa0554660 | Msa1275860 | 0.821322 | 4.294728e-53 | -8.615850e-47 |
| Msa0591490 | Msa1275860 | 0.833580 | 4.914585e-56 | -8.615850e-47 |
| Msa0893840 | Msa1275860 | 0.814630 | 1.396914e-51 | -8.615850e-47 |
| Msa0896910 | Msa1275860 | 0.804200 | 2.421606e-49 | -8.615850e-47 |
| Msa0896920 | Msa1275860 | 0.804466 | 2.131350e-49 | -8.615850e-47 |
| Msa0913550 | Msa1275860 | 0.836774 | 7.682097e-57 | -8.615850e-47 |
| Msa0946010 | Msa1275860 | 0.805721 | 1.164270e-49 | -8.615850e-47 |
| Msa0951150 | Msa1275860 | 0.824100 | 9.690624e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275860 | MtrunA17_Chr8g0342981 | 96.016 | 502 | 20 | 0 | 1 | 502 | 322 | 823 | 0.0 | 1004 |
| Msa1275860 | MtrunA17_Chr8g0342971 | 73.757 | 503 | 128 | 2 | 1 | 502 | 371 | 870 | 0.0 | 783 |
| Msa1275860 | MtrunA17_Chr8g0344211 | 73.956 | 503 | 127 | 2 | 1 | 502 | 369 | 868 | 0.0 | 773 |
| Msa1275860 | MtrunA17_Chr8g0342951 | 74.052 | 501 | 126 | 2 | 3 | 502 | 371 | 868 | 0.0 | 771 |
| Msa1275860 | MtrunA17_Chr8g0342891 | 71.769 | 503 | 138 | 2 | 1 | 502 | 362 | 861 | 0.0 | 768 |
| Msa1275860 | MtrunA17_Chr8g0343011 | 72.167 | 503 | 136 | 2 | 1 | 502 | 366 | 865 | 0.0 | 766 |
| Msa1275860 | MtrunA17_Chr8g0342931 | 70.974 | 503 | 142 | 2 | 1 | 502 | 251 | 750 | 0.0 | 753 |
| Msa1275860 | MtrunA17_Chr8g0342921 | 70.238 | 504 | 144 | 4 | 1 | 502 | 370 | 869 | 0.0 | 740 |
| Msa1275860 | MtrunA17_Chr8g0342901 | 67.723 | 505 | 157 | 3 | 1 | 502 | 327 | 828 | 0.0 | 722 |
| Msa1275860 | MtrunA17_Chr8g0342991 | 68.849 | 504 | 135 | 5 | 1 | 502 | 324 | 807 | 0.0 | 707 |
| Msa1275860 | MtrunA17_Chr8g0342881 | 63.817 | 503 | 178 | 2 | 1 | 502 | 357 | 856 | 0.0 | 674 |
| Msa1275860 | MtrunA17_Chr8g0343001 | 65.675 | 504 | 151 | 5 | 1 | 502 | 324 | 807 | 0.0 | 674 |
| Msa1275860 | MtrunA17_Chr2g0329911 | 63.618 | 503 | 178 | 3 | 1 | 502 | 363 | 861 | 0.0 | 657 |
| Msa1275860 | MtrunA17_Chr2g0329901 | 61.431 | 503 | 187 | 4 | 1 | 502 | 367 | 863 | 0.0 | 630 |
| Msa1275860 | MtrunA17_Chr7g0272791 | 59.880 | 501 | 196 | 3 | 3 | 502 | 371 | 867 | 0.0 | 623 |
| Msa1275860 | MtrunA17_Chr3g0120071 | 60.239 | 503 | 196 | 3 | 1 | 502 | 359 | 858 | 0.0 | 621 |
| Msa1275860 | MtrunA17_Chr8g0343031 | 60.040 | 503 | 195 | 4 | 1 | 502 | 368 | 865 | 0.0 | 618 |
| Msa1275860 | MtrunA17_Chr8g0343021 | 59.681 | 501 | 196 | 4 | 3 | 502 | 369 | 864 | 0.0 | 615 |
| Msa1275860 | MtrunA17_Chr5g0406871 | 60.040 | 503 | 195 | 4 | 1 | 502 | 370 | 867 | 0.0 | 613 |
| Msa1275860 | MtrunA17_Chr1g0205611 | 57.791 | 507 | 204 | 4 | 2 | 502 | 354 | 856 | 0.0 | 608 |
| Msa1275860 | MtrunA17_Chr1g0191921 | 60.359 | 502 | 194 | 3 | 2 | 502 | 361 | 858 | 0.0 | 608 |
| Msa1275860 | MtrunA17_Chr8g0344241 | 73.116 | 398 | 103 | 2 | 106 | 502 | 67 | 461 | 0.0 | 597 |
| Msa1275860 | MtrunA17_Chr8g0344201 | 46.825 | 504 | 260 | 6 | 1 | 501 | 428 | 926 | 4.29e-157 | 470 |
| Msa1275860 | MtrunA17_Chr8g0377101 | 46.967 | 511 | 252 | 6 | 1 | 502 | 416 | 916 | 3.51e-155 | 465 |
| Msa1275860 | MtrunA17_Chr3g0118651 | 47.047 | 508 | 257 | 9 | 1 | 502 | 402 | 903 | 4.26e-148 | 446 |
| Msa1275860 | MtrunA17_Chr4g0047281 | 43.452 | 504 | 271 | 5 | 1 | 501 | 402 | 894 | 2.30e-145 | 439 |
| Msa1275860 | MtrunA17_Chr4g0033171 | 44.660 | 515 | 256 | 10 | 3 | 502 | 225 | 725 | 3.42e-143 | 428 |
| Msa1275860 | MtrunA17_Chr3g0118641 | 45.276 | 508 | 266 | 8 | 1 | 502 | 401 | 902 | 2.71e-142 | 431 |
| Msa1275860 | MtrunA17_Chr3g0118621 | 45.866 | 508 | 264 | 8 | 1 | 502 | 363 | 865 | 2.00e-128 | 394 |
| Msa1275860 | MtrunA17_Chr8g0338451 | 41.498 | 494 | 269 | 8 | 3 | 488 | 375 | 856 | 1.17e-127 | 392 |
| Msa1275860 | MtrunA17_Chr6g0471951 | 38.696 | 460 | 235 | 7 | 3 | 457 | 57 | 474 | 6.61e-109 | 332 |
| Msa1275860 | MtrunA17_Chr7g0218231 | 61.207 | 116 | 44 | 1 | 158 | 272 | 17 | 132 | 1.72e-42 | 147 |
| Msa1275860 | MtrunA17_Chr6g0468081 | 56.180 | 89 | 38 | 1 | 185 | 272 | 1 | 89 | 4.23e-26 | 102 |
| Msa1275860 | MtrunA17_Chr4g0047271 | 41.758 | 91 | 53 | 0 | 411 | 501 | 1 | 91 | 4.66e-18 | 79.3 |
| Msa1275860 | MtrunA17_Chr3g0137991 | 34.646 | 127 | 63 | 4 | 378 | 502 | 1 | 109 | 5.10e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275860 | AT3G22400.1 | 57.791 | 507 | 204 | 4 | 2 | 502 | 384 | 886 | 0.0 | 613 |
| Msa1275860 | AT1G55020.1 | 58.250 | 503 | 203 | 5 | 2 | 502 | 362 | 859 | 0.0 | 599 |
| Msa1275860 | AT1G17420.1 | 48.119 | 505 | 254 | 6 | 1 | 502 | 420 | 919 | 3.95e-160 | 478 |
| Msa1275860 | AT1G72520.1 | 46.640 | 506 | 262 | 6 | 1 | 502 | 425 | 926 | 1.30e-157 | 472 |
| Msa1275860 | AT1G67560.1 | 45.686 | 510 | 263 | 8 | 1 | 502 | 414 | 917 | 7.48e-145 | 439 |
| Msa1275860 | AT3G45140.2 | 45.669 | 508 | 264 | 10 | 1 | 502 | 253 | 754 | 4.44e-141 | 424 |
| Msa1275860 | AT3G45140.1 | 45.669 | 508 | 264 | 10 | 1 | 502 | 395 | 896 | 1.39e-139 | 424 |
Find 156 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTTAACATCTTTATT+TGG | 0.090306 | 8_3:+10107110 | None:intergenic |
| GCCACTGATTTAGCATTAAT+TGG | 0.113920 | 8_3:+10108033 | None:intergenic |
| CTTCATGCAGCTGTTAATTT+TGG | 0.155837 | 8_3:-10106056 | Msa1275860:CDS |
| ATTTCGTGATCGTGCATTTA+TGG | 0.174964 | 8_3:+10106803 | None:intergenic |
| GACTTGGGTCGTCCAGTTCT+TGG | 0.187573 | 8_3:-10108495 | Msa1275860:intron |
| CTATCTAACTTGCTCTTTCT+TGG | 0.212968 | 8_3:+10107529 | None:intergenic |
| GCATTTACTTTCCTCAAATA+TGG | 0.213554 | 8_3:+10107272 | None:intergenic |
| CATCTTTAACATCTTTATTT+GGG | 0.222972 | 8_3:+10107111 | None:intergenic |
| GAAAGGATCCCATGAGTTTA+AGG | 0.229876 | 8_3:-10105970 | Msa1275860:CDS |
| AAGATGATGAACCTTTAATT+TGG | 0.253091 | 8_3:-10107094 | Msa1275860:CDS |
| ATGAGGAACTCAGAGCATTT+TGG | 0.263372 | 8_3:-10106193 | Msa1275860:CDS |
| GGACTACATGAAGACATATT+TGG | 0.266844 | 8_3:-10105937 | Msa1275860:CDS |
| GAATGCTAAGTGGGTTAAAA+TGG | 0.267598 | 8_3:-10106135 | Msa1275860:CDS |
| ACCCTTGATGTTCCAAATCT+TGG | 0.280311 | 8_3:-10108949 | Msa1275860:five_prime_UTR |
| TTTCTCTGGCATGAATCTTA+TGG | 0.281030 | 8_3:+10105989 | None:intergenic |
| TGTCCAAGGTATTCCTCATT+AGG | 0.283725 | 8_3:+10105846 | None:intergenic |
| ACTTGGGTCGTCCAGTTCTT+GGG | 0.289714 | 8_3:-10108494 | Msa1275860:intron |
| GTTTGGCTCCAAGTGTTCTT+TGG | 0.296808 | 8_3:+10107474 | None:intergenic |
| TTTGCAAGGAGCCAAATTAA+AGG | 0.323385 | 8_3:+10107083 | None:intergenic |
| CATCCTAATGGTGATAGTTT+TGG | 0.332322 | 8_3:-10107158 | Msa1275860:CDS |
| TTGTAGGCTTCTACTGGCTC+TGG | 0.340356 | 8_3:+10105792 | None:intergenic |
| AAGTTGATGGTTCCAAGATT+TGG | 0.344231 | 8_3:+10108937 | None:intergenic |
| CCACTGATTTAGCATTAATT+GGG | 0.359882 | 8_3:+10108034 | None:intergenic |
| CAGCTGTTGTTTACAAGGAT+TGG | 0.364104 | 8_3:-10106713 | Msa1275860:CDS |
| ACTGTGACCCCATCCATGTT+TGG | 0.364475 | 8_3:+10107457 | None:intergenic |
| ACTTCAAGGGTTTCAACCTT+TGG | 0.366918 | 8_3:+10105903 | None:intergenic |
| GTAGCCTTACCTTTCTTACT+TGG | 0.369109 | 8_3:+10108408 | None:intergenic |
| CTGTTGATGGACTAGAGATA+TGG | 0.369958 | 8_3:-10106286 | Msa1275860:CDS |
| CTACGATGTCTACAATGATT+TGG | 0.375479 | 8_3:-10108538 | Msa1275860:five_prime_UTR |
| GAAGAGTTGAAGACTTTAAG+AGG | 0.376977 | 8_3:-10108603 | Msa1275860:five_prime_UTR |
| AGCTGTTGTTTACAAGGATT+GGG | 0.377805 | 8_3:-10106712 | Msa1275860:CDS |
| AAAGAACTGAAGGTGATCTT+TGG | 0.382740 | 8_3:-10105824 | Msa1275860:CDS |
| GAGCTGGTGTTTCACTTAGA+AGG | 0.387861 | 8_3:+10108646 | None:intergenic |
| CATTCGTCATAGCAACAAAT+AGG | 0.394550 | 8_3:-10106887 | Msa1275860:CDS |
| ACTCTTGCACTACCCTCATA+TGG | 0.396428 | 8_3:-10106091 | Msa1275860:CDS |
| AACTCATGGGATCCTTTCTC+TGG | 0.406308 | 8_3:+10105975 | None:intergenic |
| CCCAAGTCAGCCTCTTTGTC+TGG | 0.409139 | 8_3:+10108510 | None:intergenic |
| TGAGTTGCAGATAAAGTTGA+TGG | 0.410883 | 8_3:+10108924 | None:intergenic |
| GTGTTCTTTGGTTATTGTGC+TGG | 0.414888 | 8_3:+10107486 | None:intergenic |
| AAAGAAATTGATTGAAATTG+AGG | 0.415217 | 8_3:-10105760 | Msa1275860:CDS |
| GGAACTAAAAGTTTATGAAT+TGG | 0.415574 | 8_3:+10106846 | None:intergenic |
| CTTTATCCTTCCAGTGGACC+AGG | 0.416744 | 8_3:-10105663 | Msa1275860:CDS |
| TCATAAGTAGAGTAAACATT+TGG | 0.426888 | 8_3:+10108307 | None:intergenic |
| GGCAAGTAAACATTACTAAC+AGG | 0.430747 | 8_3:+10107134 | None:intergenic |
| TCTTGTCTATAGTAGACTAA+TGG | 0.431200 | 8_3:+10108624 | None:intergenic |
| TCTAGTCCATCAACAGCATA+TGG | 0.431259 | 8_3:+10106293 | None:intergenic |
| GAAGGATAAAGAAGAGTGTA+TGG | 0.437895 | 8_3:+10105675 | None:intergenic |
| GAACTAAAAGTTTATGAATT+GGG | 0.442063 | 8_3:+10106847 | None:intergenic |
| GGATGGAACTTTGAATCCAT+TGG | 0.442376 | 8_3:-10107201 | Msa1275860:CDS |
| AATGTCAGCTGTTGTTTACA+AGG | 0.448150 | 8_3:-10106718 | Msa1275860:CDS |
| GCCAGACAAAGAGGCTGACT+TGG | 0.449309 | 8_3:-10108511 | Msa1275860:five_prime_UTR |
| TACGATGTCTACAATGATTT+GGG | 0.450405 | 8_3:-10108537 | Msa1275860:five_prime_UTR |
| ATGCTATCTATCCATATTTG+AGG | 0.450784 | 8_3:-10107283 | Msa1275860:CDS |
| TACTTAGTATATCAGTATCA+TGG | 0.454258 | 8_3:+10108091 | None:intergenic |
| GGACCAAAACTATCACCATT+AGG | 0.454709 | 8_3:+10107155 | None:intergenic |
| AAGTTAGATAGTAAACTCTA+TGG | 0.460764 | 8_3:-10107517 | Msa1275860:CDS |
| GATTATCCATATGCTGTTGA+TGG | 0.465219 | 8_3:-10106299 | Msa1275860:CDS |
| GATCTTACCCTTCGAGGGTA+AGG | 0.465611 | 8_3:+10108441 | None:intergenic |
| TTGAAGACTTTAAGAGGAGA+TGG | 0.467418 | 8_3:-10108597 | Msa1275860:five_prime_UTR |
| GAACGGGTGACCGCAAAGAA+TGG | 0.470425 | 8_3:-10108575 | Msa1275860:five_prime_UTR |
| CACCTTCAGTTCTTTGTCCA+AGG | 0.475536 | 8_3:+10105832 | None:intergenic |
| CACAATAACCAAAGAACACT+TGG | 0.476943 | 8_3:-10107482 | Msa1275860:CDS |
| CTAAGTTTGCCACATCCTAA+TGG | 0.478321 | 8_3:-10107170 | Msa1275860:CDS |
| GTGCTGAAGCAATCCATATG+AGG | 0.478585 | 8_3:+10106078 | None:intergenic |
| CATAGTATTCATAACTTCAA+GGG | 0.479502 | 8_3:+10105890 | None:intergenic |
| ATCCCTCTACCGGTCAATCC+TGG | 0.481528 | 8_3:+10105645 | None:intergenic |
| ACCGGTCAATCCTGGTCCAC+TGG | 0.482600 | 8_3:+10105653 | None:intergenic |
| TTTGCAAGACAGATGATTGC+TGG | 0.490818 | 8_3:-10107713 | Msa1275860:CDS |
| ACTTGATCAATTAGTGCAGC+TGG | 0.495729 | 8_3:+10105517 | None:intergenic |
| TAGCGAGCTCCTTAAACTCA+TGG | 0.496735 | 8_3:+10105961 | None:intergenic |
| GGACCAGGATTGACCGGTAG+AGG | 0.499249 | 8_3:-10105648 | Msa1275860:CDS |
| TGGTCTGCGTCTTCTGATAG+AGG | 0.500498 | 8_3:-10106321 | Msa1275860:CDS |
| CTACCAGATCTTACCCTTCG+AGG | 0.502272 | 8_3:+10108435 | None:intergenic |
| CCAACACCACAAGTGATTGC+AGG | 0.504972 | 8_3:-10107994 | Msa1275860:intron |
| CACTTGGAGCCAAACATGGA+TGG | 0.506365 | 8_3:-10107466 | Msa1275860:CDS |
| TTTAATTTGGCTCCTTGCAA+AGG | 0.507483 | 8_3:-10107081 | Msa1275860:CDS |
| AGATCCTATCCCATTCTTTG+CGG | 0.511903 | 8_3:+10108565 | None:intergenic |
| TGAAGTTATGAATACTATGC+TGG | 0.513367 | 8_3:-10105886 | Msa1275860:CDS |
| AACGGGTGACCGCAAAGAAT+GGG | 0.513563 | 8_3:-10108574 | Msa1275860:five_prime_UTR |
| ATCTTTAACATCTTTATTTG+GGG | 0.516495 | 8_3:+10107112 | None:intergenic |
| CCTGCAATCACTTGTGGTGT+TGG | 0.518134 | 8_3:+10107994 | None:intergenic |
| GCATAGTATTCATAACTTCA+AGG | 0.518741 | 8_3:+10105889 | None:intergenic |
| GGTAGAGAACCAAGTAAGAA+AGG | 0.522835 | 8_3:-10108417 | Msa1275860:five_prime_UTR |
| TCAACTTTATCTGCAACTCA+TGG | 0.523897 | 8_3:-10108921 | Msa1275860:five_prime_UTR |
| AAGAATGGTTCTAGCAGCAT+AGG | 0.523930 | 8_3:+10107235 | None:intergenic |
| ATAAGATTCATGCCAGAGAA+AGG | 0.523973 | 8_3:-10105987 | Msa1275860:CDS |
| TTGGAAAGAACTTGTAGAAG+TGG | 0.524808 | 8_3:-10106174 | Msa1275860:CDS |
| TGGAAAGAACTTGTAGAAGT+GGG | 0.530595 | 8_3:-10106173 | Msa1275860:CDS |
| TCCAGTGGACCAGGATTGAC+CGG | 0.531569 | 8_3:-10105654 | Msa1275860:CDS |
| GACTTTAAGAGGAGATGGAA+CGG | 0.533638 | 8_3:-10108592 | Msa1275860:five_prime_UTR |
| TTCCAAGATTTGGAACATCA+AGG | 0.534980 | 8_3:+10108947 | None:intergenic |
| CCCAATTAATGCTAAATCAG+TGG | 0.536006 | 8_3:-10108034 | Msa1275860:five_prime_UTR |
| TACCCTCGAAGGGTAAGATC+TGG | 0.536332 | 8_3:-10108438 | Msa1275860:five_prime_UTR |
| ACTTTAAGAGGAGATGGAAC+GGG | 0.538118 | 8_3:-10108591 | Msa1275860:five_prime_UTR |
| CTCACCAATGGCTGACGAGT+TGG | 0.542116 | 8_3:+10107027 | None:intergenic |
| CTATTTGTTGCTATGACGAA+TGG | 0.543162 | 8_3:+10106888 | None:intergenic |
| TGTTGATGGACTAGAGATAT+GGG | 0.545247 | 8_3:-10106285 | Msa1275860:CDS |
| ACTTGGAGCCAAACATGGAT+GGG | 0.545456 | 8_3:-10107465 | Msa1275860:CDS |
| CAACAGCATATGCCTTTGCA+AGG | 0.546438 | 8_3:+10107069 | None:intergenic |
| GTCACCAACTCGTCAGCCAT+TGG | 0.549394 | 8_3:-10107031 | Msa1275860:intron |
| AGAACCAAGTAAGAAAGGTA+AGG | 0.550364 | 8_3:-10108412 | Msa1275860:five_prime_UTR |
| GACGATGATTCTTCCCCACA+TGG | 0.553935 | 8_3:-10106341 | Msa1275860:CDS |
| ATTAATTGGGGAAAGTTCGT+TGG | 0.554684 | 8_3:+10108047 | None:intergenic |
| TTGCTTATTATCTAGAGGAG+TGG | 0.555634 | 8_3:-10106369 | Msa1275860:intron |
| CTATAGTAGACTAATGGAGC+TGG | 0.556484 | 8_3:+10108630 | None:intergenic |
| ATGTGGCAAACTTAGCTCAA+TGG | 0.559945 | 8_3:+10107178 | None:intergenic |
| AGCGAGCTCCTTAAACTCAT+GGG | 0.561213 | 8_3:+10105962 | None:intergenic |
| AGAACACTTGGAGCCAAACA+TGG | 0.561811 | 8_3:-10107470 | Msa1275860:CDS |
| TTGAGGAAGAGTTCATTCAA+AGG | 0.562917 | 8_3:-10105743 | Msa1275860:CDS |
| GATCCTAATGAGGAATACCT+TGG | 0.563947 | 8_3:-10105849 | Msa1275860:CDS |
| GGATGGGGTCACAGTAAAAG+AGG | 0.568212 | 8_3:-10107449 | Msa1275860:intron |
| TATGGGCTGCTATCAAGTCA+TGG | 0.569976 | 8_3:-10106268 | Msa1275860:CDS |
| TCCAAGATTTGGAACATCAA+GGG | 0.571677 | 8_3:+10108948 | None:intergenic |
| TAAAGATGTTAAAGATGATG+AGG | 0.573052 | 8_3:-10106210 | Msa1275860:CDS |
| AGAGTGTATGGAAACTTCAC+AGG | 0.573626 | 8_3:+10105687 | None:intergenic |
| GAGTGACAACACATCTTGAA+AGG | 0.575030 | 8_3:+10108131 | None:intergenic |
| GAAACTTCACAGGCCCATAC+CGG | 0.575716 | 8_3:+10105697 | None:intergenic |
| GTCATCGTGCCACGATAGTG+TGG | 0.579536 | 8_3:+10106825 | None:intergenic |
| CACTGATTTAGCATTAATTG+GGG | 0.580014 | 8_3:+10108035 | None:intergenic |
| ACTCTTCTTTATCCTTCCAG+TGG | 0.580368 | 8_3:-10105669 | Msa1275860:CDS |
| TACATACCTGCAATCACTTG+TGG | 0.583056 | 8_3:+10107988 | None:intergenic |
| ATCCATGCATGATCCTAATG+AGG | 0.583398 | 8_3:-10105859 | Msa1275860:CDS |
| GTGACCGCAAAGAATGGGAT+AGG | 0.584275 | 8_3:-10108569 | Msa1275860:five_prime_UTR |
| TTCCTCATTAGGATCATGCA+TGG | 0.584765 | 8_3:+10105857 | None:intergenic |
| ATGGGCTGCTATCAAGTCAT+GGG | 0.588409 | 8_3:-10106267 | Msa1275860:CDS |
| TACCAGATCTTACCCTTCGA+GGG | 0.590224 | 8_3:+10108436 | None:intergenic |
| TCTTTAACATCTTTATTTGG+GGG | 0.593891 | 8_3:+10107113 | None:intergenic |
| GTCAATCCTGGTCCACTGGA+AGG | 0.594966 | 8_3:+10105657 | None:intergenic |
| TACCTTGGACAAAGAACTGA+AGG | 0.595384 | 8_3:-10105834 | Msa1275860:CDS |
| TGAGTTTAAGGAGCTCGCTA+AGG | 0.596693 | 8_3:-10105958 | Msa1275860:CDS |
| CCAGACAAAGAGGCTGACTT+GGG | 0.599209 | 8_3:-10108510 | Msa1275860:five_prime_UTR |
| ATCAGAAGACGCAGACCATG+TGG | 0.603390 | 8_3:+10106326 | None:intergenic |
| GACCAGGATTGACCGGTAGA+GGG | 0.605995 | 8_3:-10105647 | Msa1275860:CDS |
| TTGGACAATATCAGTACGGA+GGG | 0.615349 | 8_3:-10106037 | Msa1275860:CDS |
| AAACTATCACCATTAGGATG+TGG | 0.615628 | 8_3:+10107161 | None:intergenic |
| ACTGTTGGGAATCCCTCTAC+CGG | 0.620513 | 8_3:+10105635 | None:intergenic |
| TGCTGAAGCAATCCATATGA+GGG | 0.621259 | 8_3:+10106079 | None:intergenic |
| TCATGCATGGATGGCTGATG+AGG | 0.623591 | 8_3:-10107738 | Msa1275860:exon |
| CAGAAGACGCAGACCATGTG+GGG | 0.624840 | 8_3:+10106328 | None:intergenic |
| AAATATCTTGATCAATGCAG+AGG | 0.628743 | 8_3:-10106784 | Msa1275860:CDS |
| GAACTTGTAGAAGTGGGTCA+TGG | 0.630532 | 8_3:-10106167 | Msa1275860:CDS |
| TTTGGAGACAATCACACCAA+AGG | 0.631480 | 8_3:-10105919 | Msa1275860:CDS |
| CATCAAGGGTCAAACTCACA+AGG | 0.634650 | 8_3:+10108962 | None:intergenic |
| AAACTTAGCTCAATGGCCAA+TGG | 0.637050 | 8_3:+10107185 | None:intergenic |
| AATATCTTGATCAATGCAGA+GGG | 0.638662 | 8_3:-10106783 | Msa1275860:CDS |
| TTTGGGTGAGCCAGACAAAG+AGG | 0.639737 | 8_3:-10108520 | Msa1275860:five_prime_UTR |
| GCTTTGAATAAAAGATGAGA+AGG | 0.643318 | 8_3:-10105571 | Msa1275860:three_prime_UTR |
| AACAAACAACACAACAACCA+TGG | 0.650735 | 8_3:+10105594 | None:intergenic |
| CTTGGAGCCAAACATGGATG+GGG | 0.651235 | 8_3:-10107464 | Msa1275860:CDS |
| GCGCATCTTCTTTACCAACA+AGG | 0.651998 | 8_3:-10108869 | Msa1275860:intron |
| TGACTTGAAGAATGCTAAGT+GGG | 0.656610 | 8_3:-10106144 | Msa1275860:CDS |
| TTTGGACAATATCAGTACGG+AGG | 0.658574 | 8_3:-10106038 | Msa1275860:CDS |
| TCAGAAGACGCAGACCATGT+GGG | 0.666280 | 8_3:+10106327 | None:intergenic |
| GTGACTTGAAGAATGCTAAG+TGG | 0.679804 | 8_3:-10106145 | Msa1275860:CDS |
| GTAAATTCAACAAAACATCG+AGG | 0.749212 | 8_3:-10108071 | Msa1275860:five_prime_UTR |
| AATATGGATAGATAGCATCG+TGG | 0.793995 | 8_3:+10107288 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAGATATATAAATATA+GGG | + | chr8_3:10105776-10105795 | None:intergenic | 10.0% |
| !!! | ATTTTGAGATATATAAATAT+AGG | + | chr8_3:10105777-10105796 | None:intergenic | 10.0% |
| !!! | TAAATTTTATTTTGTTTAAC+AGG | - | chr8_3:10107130-10107149 | Msa1275860:CDS | 10.0% |
| !! | TTATTATATCAAAATGATCT+AGG | + | chr8_3:10107479-10107498 | None:intergenic | 15.0% |
| !! | TTTGTTTGAAAAATATTGTA+TGG | - | chr8_3:10107733-10107752 | Msa1275860:exon | 15.0% |
| !!! | ATTAATGTCTTTTTAACAAA+TGG | + | chr8_3:10107866-10107885 | None:intergenic | 15.0% |
| !!! | TATGTAATTAGTTTGTTATT+TGG | + | chr8_3:10107946-10107965 | None:intergenic | 15.0% |
| !!! | AAATGTAAAAGGTTTTTTCT+TGG | + | chr8_3:10105713-10105732 | None:intergenic | 20.0% |
| !! | GTTAAGAAATCAAATGTAAA+AGG | + | chr8_3:10105724-10105743 | None:intergenic | 20.0% |
| !! | TTAAATATATTGCGATAACT+TGG | + | chr8_3:10106547-10106566 | None:intergenic | 20.0% |
| !! | ATGTACAAAAGAAATAAAGA+AGG | - | chr8_3:10106839-10106858 | Msa1275860:CDS | 20.0% |
| !! | TATAATGCATACATAGTAAT+TGG | - | chr8_3:10106883-10106902 | Msa1275860:CDS | 20.0% |
| !! | AATAAATATAGAAAGCAATG+CGG | + | chr8_3:10106916-10106935 | None:intergenic | 20.0% |
| !!! | AACCATTCTTTTTGTTAAAA+AGG | - | chr8_3:10107253-10107272 | Msa1275860:CDS | 20.0% |
| !!! | ATCCTTTTTAACAAAAAGAA+TGG | + | chr8_3:10107258-10107277 | None:intergenic | 20.0% |
| !!! | ATTCTTTTTGTTAAAAAGGA+TGG | - | chr8_3:10107257-10107276 | Msa1275860:CDS | 20.0% |
| !!! | ATCTTTAACATCTTTATTTG+GGG | + | chr8_3:10107366-10107385 | None:intergenic | 20.0% |
| !!! | CATCTTTAACATCTTTATTT+GGG | + | chr8_3:10107367-10107386 | None:intergenic | 20.0% |
| !! | TCATCTTTAACATCTTTATT+TGG | + | chr8_3:10107368-10107387 | None:intergenic | 20.0% |
| !! | GAACTAAAAGTTTATGAATT+GGG | + | chr8_3:10107631-10107650 | None:intergenic | 20.0% |
| !!! | TTTAAGTTATTGATTCACTT+GGG | + | chr8_3:10107914-10107933 | None:intergenic | 20.0% |
| !!! | TTTTAAGTTATTGATTCACT+TGG | + | chr8_3:10107915-10107934 | None:intergenic | 20.0% |
| !! | AAAGAAATTGATTGAAATTG+AGG | - | chr8_3:10108715-10108734 | Msa1275860:intron | 20.0% |
| !! | GATATTTTTCATTACCTTGT+TGG | + | chr8_3:10105623-10105642 | None:intergenic | 25.0% |
| ! | TCATAAGTAGAGTAAACATT+TGG | + | chr8_3:10106171-10106190 | None:intergenic | 25.0% |
| ! | TACTTAGTATATCAGTATCA+TGG | + | chr8_3:10106387-10106406 | None:intergenic | 25.0% |
| ! | AATCATATAAAGAAAGCTCA+TGG | - | chr8_3:10106577-10106596 | Msa1275860:intron | 25.0% |
| ! | TTGCTTTCTATATTTATTGC+AGG | - | chr8_3:10106918-10106937 | Msa1275860:intron | 25.0% |
| ! | AAGTTAGATAGTAAACTCTA+TGG | - | chr8_3:10106958-10106977 | Msa1275860:intron | 25.0% |
| !! | TCTTTAACATCTTTATTTGG+GGG | + | chr8_3:10107365-10107384 | None:intergenic | 25.0% |
| ! | AAGATGATGAACCTTTAATT+TGG | - | chr8_3:10107381-10107400 | Msa1275860:intron | 25.0% |
| ! | TATATATTTACTTGTGTCAC+AGG | - | chr8_3:10107540-10107559 | Msa1275860:intron | 25.0% |
| ! | GGAACTAAAAGTTTATGAAT+TGG | + | chr8_3:10107632-10107651 | None:intergenic | 25.0% |
| ! | TACCTACTGATCTAAAAAAT+AGG | - | chr8_3:10107804-10107823 | Msa1275860:intron | 25.0% |
| !!! | TACCTATTTTTTAGATCAGT+AGG | + | chr8_3:10107809-10107828 | None:intergenic | 25.0% |
| !! | TTGCAAAACATTACATCTTT+TGG | - | chr8_3:10107834-10107853 | Msa1275860:intron | 25.0% |
| !!! | TAGTTTGTTATTTGGTAGTT+AGG | + | chr8_3:10107938-10107957 | None:intergenic | 25.0% |
| ! | GCAAAAAAAAAATACAGAAG+GGG | + | chr8_3:10108066-10108085 | None:intergenic | 25.0% |
| ! | CGCAAAAAAAAAATACAGAA+GGG | + | chr8_3:10108067-10108086 | None:intergenic | 25.0% |
| ! | ACGCAAAAAAAAAATACAGA+AGG | + | chr8_3:10108068-10108087 | None:intergenic | 25.0% |
| ! | TAAAGATGTTAAAGATGATG+AGG | - | chr8_3:10107370-10107389 | Msa1275860:intron | 25.0% |
| !! | AATTTTGGACAATATCAGTA+CGG | - | chr8_3:10108434-10108453 | Msa1275860:five_prime_UTR | 25.0% |
| !!! | ATGAATCTTATGGTTTTAGT+TGG | + | chr8_3:10108479-10108498 | None:intergenic | 25.0% |
| ! | CATAGTATTCATAACTTCAA+GGG | + | chr8_3:10108588-10108607 | None:intergenic | 25.0% |
| !! | TTTCTTTGCAAACTTTTTGT+AGG | + | chr8_3:10108702-10108721 | None:intergenic | 25.0% |
| TCTTGTCTATAGTAGACTAA+TGG | + | chr8_3:10105854-10105873 | None:intergenic | 30.0% | |
| TACGATGTCTACAATGATTT+GGG | - | chr8_3:10105938-10105957 | Msa1275860:CDS | 30.0% | |
| GTAAATTCAACAAAACATCG+AGG | - | chr8_3:10106404-10106423 | Msa1275860:intron | 30.0% | |
| !! | CACTGATTTAGCATTAATTG+GGG | + | chr8_3:10106443-10106462 | None:intergenic | 30.0% |
| !! | CCACTGATTTAGCATTAATT+GGG | + | chr8_3:10106444-10106463 | None:intergenic | 30.0% |
| TTGGATATATTGCGATAACT+TGG | + | chr8_3:10106528-10106547 | None:intergenic | 30.0% | |
| !! | ATTTACCAGAAGTTTTTCGA+TGG | + | chr8_3:10106802-10106821 | None:intergenic | 30.0% |
| ATGCTATCTATCCATATTTG+AGG | - | chr8_3:10107192-10107211 | Msa1275860:CDS | 30.0% | |
| GCATTTACTTTCCTCAAATA+TGG | + | chr8_3:10107206-10107225 | None:intergenic | 30.0% | |
| AAATATCTTGATCAATGCAG+AGG | - | chr8_3:10107691-10107710 | Msa1275860:CDS | 30.0% | |
| AATATCTTGATCAATGCAGA+GGG | - | chr8_3:10107692-10107711 | Msa1275860:CDS | 30.0% | |
| AAAAAAAAATACAGAAGGGG+TGG | + | chr8_3:10108063-10108082 | None:intergenic | 30.0% | |
| CTTTCTTGCTTATTATCTAG+AGG | - | chr8_3:10108101-10108120 | Msa1275860:five_prime_UTR | 30.0% | |
| !!! | ATCTTATGGTTTTAGTTGGT+CGG | + | chr8_3:10108475-10108494 | None:intergenic | 30.0% |
| GCATAGTATTCATAACTTCA+AGG | + | chr8_3:10108589-10108608 | None:intergenic | 30.0% | |
| TGAAGTTATGAATACTATGC+TGG | - | chr8_3:10108589-10108608 | Msa1275860:five_prime_UTR | 30.0% | |
| ATGATGAGTCATTGAAAAAC+CGG | - | chr8_3:10108759-10108778 | Msa1275860:intron | 30.0% | |
| ! | GCTTTGAATAAAAGATGAGA+AGG | - | chr8_3:10108904-10108923 | Msa1275860:five_prime_UTR | 30.0% |
| ! | TCCAAGATTTGGAACATCAA+GGG | + | chr8_3:10105530-10105549 | None:intergenic | 35.0% |
| ! | TTCCAAGATTTGGAACATCA+AGG | + | chr8_3:10105531-10105550 | None:intergenic | 35.0% |
| !! | AAGTTGATGGTTCCAAGATT+TGG | + | chr8_3:10105541-10105560 | None:intergenic | 35.0% |
| TGAGTTGCAGATAAAGTTGA+TGG | + | chr8_3:10105554-10105573 | None:intergenic | 35.0% | |
| TCAACTTTATCTGCAACTCA+TGG | - | chr8_3:10105554-10105573 | Msa1275860:three_prime_UTR | 35.0% | |
| ATTTCTTAACTTATGCCCCA+AGG | - | chr8_3:10105734-10105753 | Msa1275860:CDS | 35.0% | |
| TTTCTTAACTTATGCCCCAA+GGG | - | chr8_3:10105735-10105754 | Msa1275860:CDS | 35.0% | |
| !! | AAATGTTAACTTGTGCCCTT+GGG | + | chr8_3:10105753-10105772 | None:intergenic | 35.0% |
| GAAGAGTTGAAGACTTTAAG+AGG | - | chr8_3:10105872-10105891 | Msa1275860:CDS | 35.0% | |
| ! | TTGAAGACTTTAAGAGGAGA+TGG | - | chr8_3:10105878-10105897 | Msa1275860:CDS | 35.0% |
| CTACGATGTCTACAATGATT+TGG | - | chr8_3:10105937-10105956 | Msa1275860:CDS | 35.0% | |
| AGAACCAAGTAAGAAAGGTA+AGG | - | chr8_3:10106063-10106082 | Msa1275860:CDS | 35.0% | |
| !!! | CGACTATTATTTTGAGACAC+AGG | + | chr8_3:10106124-10106143 | None:intergenic | 35.0% |
| GTGTGAAGTAATTCATCTCT+TGG | + | chr8_3:10106289-10106308 | None:intergenic | 35.0% | |
| ATTAATTGGGGAAAGTTCGT+TGG | + | chr8_3:10106431-10106450 | None:intergenic | 35.0% | |
| CCCAATTAATGCTAAATCAG+TGG | - | chr8_3:10106441-10106460 | Msa1275860:intron | 35.0% | |
| !! | GCCACTGATTTAGCATTAAT+TGG | + | chr8_3:10106445-10106464 | None:intergenic | 35.0% |
| GTGATTGCAGGTATGTATAT+TGG | - | chr8_3:10106493-10106512 | Msa1275860:intron | 35.0% | |
| !! | AGAAGTTTTTCGATGGCATT+CGG | + | chr8_3:10106795-10106814 | None:intergenic | 35.0% |
| !! | CTATCTAACTTGCTCTTTCT+TGG | + | chr8_3:10106949-10106968 | None:intergenic | 35.0% |
| CACAATAACCAAAGAACACT+TGG | - | chr8_3:10106993-10107012 | Msa1275860:intron | 35.0% | |
| ATCAATTGATCGAACTACAC+AGG | - | chr8_3:10107106-10107125 | Msa1275860:CDS | 35.0% | |
| AATATGGATAGATAGCATCG+TGG | + | chr8_3:10107190-10107209 | None:intergenic | 35.0% | |
| AAACTATCACCATTAGGATG+TGG | + | chr8_3:10107317-10107336 | None:intergenic | 35.0% | |
| ! | CATCCTAATGGTGATAGTTT+TGG | - | chr8_3:10107317-10107336 | Msa1275860:CDS | 35.0% |
| GGCAAGTAAACATTACTAAC+AGG | + | chr8_3:10107344-10107363 | None:intergenic | 35.0% | |
| TTTGCAAGGAGCCAAATTAA+AGG | + | chr8_3:10107395-10107414 | None:intergenic | 35.0% | |
| !! | TTTAATTTGGCTCCTTGCAA+AGG | - | chr8_3:10107394-10107413 | Msa1275860:intron | 35.0% |
| ATCTAGGAAATTCTCACCAA+TGG | + | chr8_3:10107463-10107482 | None:intergenic | 35.0% | |
| ! | CTATTTGTTGCTATGACGAA+TGG | + | chr8_3:10107590-10107609 | None:intergenic | 35.0% |
| CATTCGTCATAGCAACAAAT+AGG | - | chr8_3:10107588-10107607 | Msa1275860:intron | 35.0% | |
| ATTTCGTGATCGTGCATTTA+TGG | + | chr8_3:10107675-10107694 | None:intergenic | 35.0% | |
| ! | AATGTCAGCTGTTGTTTACA+AGG | - | chr8_3:10107757-10107776 | Msa1275860:intron | 35.0% |
| ! | AGCTGTTGTTTACAAGGATT+GGG | - | chr8_3:10107763-10107782 | Msa1275860:intron | 35.0% |
| TTGCTTATTATCTAGAGGAG+TGG | - | chr8_3:10108106-10108125 | Msa1275860:five_prime_UTR | 35.0% | |
| GATTATCCATATGCTGTTGA+TGG | - | chr8_3:10108176-10108195 | Msa1275860:intron | 35.0% | |
| !! | TGTTGATGGACTAGAGATAT+GGG | - | chr8_3:10108190-10108209 | Msa1275860:intron | 35.0% |
| TTGGAAAGAACTTGTAGAAG+TGG | - | chr8_3:10108301-10108320 | Msa1275860:five_prime_UTR | 35.0% | |
| TGGAAAGAACTTGTAGAAGT+GGG | - | chr8_3:10108302-10108321 | Msa1275860:five_prime_UTR | 35.0% | |
| TGACTTGAAGAATGCTAAGT+GGG | - | chr8_3:10108331-10108350 | Msa1275860:five_prime_UTR | 35.0% | |
| !! | GAATGCTAAGTGGGTTAAAA+TGG | - | chr8_3:10108340-10108359 | Msa1275860:five_prime_UTR | 35.0% |
| ! | CTTCATGCAGCTGTTAATTT+TGG | - | chr8_3:10108419-10108438 | Msa1275860:five_prime_UTR | 35.0% |
| TTTCTCTGGCATGAATCTTA+TGG | + | chr8_3:10108489-10108508 | None:intergenic | 35.0% | |
| ATAAGATTCATGCCAGAGAA+AGG | - | chr8_3:10108488-10108507 | Msa1275860:intron | 35.0% | |
| GGACTACATGAAGACATATT+TGG | - | chr8_3:10108538-10108557 | Msa1275860:five_prime_UTR | 35.0% | |
| AAAGAACTGAAGGTGATCTT+TGG | - | chr8_3:10108651-10108670 | Msa1275860:five_prime_UTR | 35.0% | |
| ! | AACTTTTTGTAGGCTTCTAC+TGG | + | chr8_3:10108692-10108711 | None:intergenic | 35.0% |
| TTGAGGAAGAGTTCATTCAA+AGG | - | chr8_3:10108732-10108751 | Msa1275860:intron | 35.0% | |
| AGTCATTGAAAAACCGGTAT+GGG | - | chr8_3:10108765-10108784 | Msa1275860:intron | 35.0% | |
| ! | GAAGGATAAAGAAGAGTGTA+TGG | + | chr8_3:10108803-10108822 | None:intergenic | 35.0% |
| ! | TTTTAGATGGAGACACTGTT+GGG | + | chr8_3:10108857-10108876 | None:intergenic | 35.0% |
| ! | TTTTTAGATGGAGACACTGT+TGG | + | chr8_3:10108858-10108877 | None:intergenic | 35.0% |
| TCTCCATCTAAAAAAAGCCA+TGG | - | chr8_3:10108864-10108883 | Msa1275860:intron | 35.0% | |
| !!! | CAACCATGGCTTTTTTTAGA+TGG | + | chr8_3:10108870-10108889 | None:intergenic | 35.0% |
| AACAAACAACACAACAACCA+TGG | + | chr8_3:10108884-10108903 | None:intergenic | 35.0% | |
| TTCTCGAAAAAAAAAGCCCC+TGG | + | chr8_3:10105472-10105491 | None:intergenic | 40.0% | |
| ACCCTTGATGTTCCAAATCT+TGG | - | chr8_3:10105526-10105545 | Msa1275860:three_prime_UTR | 40.0% | |
| !! | AATGTTAACTTGTGCCCTTG+GGG | + | chr8_3:10105752-10105771 | None:intergenic | 40.0% |
| !! | GAAATGTTAACTTGTGCCCT+TGG | + | chr8_3:10105754-10105773 | None:intergenic | 40.0% |
| CTATAGTAGACTAATGGAGC+TGG | + | chr8_3:10105848-10105867 | None:intergenic | 40.0% | |
| ! | GACTTTAAGAGGAGATGGAA+CGG | - | chr8_3:10105883-10105902 | Msa1275860:CDS | 40.0% |
| ! | ACTTTAAGAGGAGATGGAAC+GGG | - | chr8_3:10105884-10105903 | Msa1275860:CDS | 40.0% |
| AGATCCTATCCCATTCTTTG+CGG | + | chr8_3:10105913-10105932 | None:intergenic | 40.0% | |
| GGTAGAGAACCAAGTAAGAA+AGG | - | chr8_3:10106058-10106077 | Msa1275860:CDS | 40.0% | |
| ! | GTAGCCTTACCTTTCTTACT+TGG | + | chr8_3:10106070-10106089 | None:intergenic | 40.0% |
| CACAGGCAGTACAAAAATTG+AGG | + | chr8_3:10106107-10106126 | None:intergenic | 40.0% | |
| GAGTGACAACACATCTTGAA+AGG | + | chr8_3:10106347-10106366 | None:intergenic | 40.0% | |
| TACATACCTGCAATCACTTG+TGG | + | chr8_3:10106490-10106509 | None:intergenic | 40.0% | |
| AGAGGATTATCATGCATGGA+TGG | - | chr8_3:10106728-10106747 | Msa1275860:CDS | 40.0% | |
| TTTGCAAGACAGATGATTGC+TGG | - | chr8_3:10106762-10106781 | Msa1275860:CDS | 40.0% | |
| GAATGCCATCGAAAAACTTC+TGG | - | chr8_3:10106794-10106813 | Msa1275860:CDS | 40.0% | |
| GTGTTCTTTGGTTATTGTGC+TGG | + | chr8_3:10106992-10107011 | None:intergenic | 40.0% | |
| !! | AAGAATGGTTCTAGCAGCAT+AGG | + | chr8_3:10107243-10107262 | None:intergenic | 40.0% |
| GGATGGAACTTTGAATCCAT+TGG | - | chr8_3:10107274-10107293 | Msa1275860:CDS | 40.0% | |
| AAACTTAGCTCAATGGCCAA+TGG | + | chr8_3:10107293-10107312 | None:intergenic | 40.0% | |
| ATGTGGCAAACTTAGCTCAA+TGG | + | chr8_3:10107300-10107319 | None:intergenic | 40.0% | |
| CTAAGTTTGCCACATCCTAA+TGG | - | chr8_3:10107305-10107324 | Msa1275860:CDS | 40.0% | |
| GGACCAAAACTATCACCATT+AGG | + | chr8_3:10107323-10107342 | None:intergenic | 40.0% | |
| !!! | CTTTTAGTTCCACACTATCG+TGG | - | chr8_3:10107641-10107660 | Msa1275860:intron | 40.0% |
| ! | CAGCTGTTGTTTACAAGGAT+TGG | - | chr8_3:10107762-10107781 | Msa1275860:intron | 40.0% |
| TCTAGTCCATCAACAGCATA+TGG | + | chr8_3:10108185-10108204 | None:intergenic | 40.0% | |
| !! | CTGTTGATGGACTAGAGATA+TGG | - | chr8_3:10108189-10108208 | Msa1275860:intron | 40.0% |
| !! | ATGAGGAACTCAGAGCATTT+TGG | - | chr8_3:10108282-10108301 | Msa1275860:five_prime_UTR | 40.0% |
| GTGACTTGAAGAATGCTAAG+TGG | - | chr8_3:10108330-10108349 | Msa1275860:five_prime_UTR | 40.0% | |
| TGCTGAAGCAATCCATATGA+GGG | + | chr8_3:10108399-10108418 | None:intergenic | 40.0% | |
| TTTGGACAATATCAGTACGG+AGG | - | chr8_3:10108437-10108456 | Msa1275860:five_prime_UTR | 40.0% | |
| TTGGACAATATCAGTACGGA+GGG | - | chr8_3:10108438-10108457 | Msa1275860:five_prime_UTR | 40.0% | |
| !!! | TGGTTTTAGTTGGTCGGTTA+AGG | + | chr8_3:10108469-10108488 | None:intergenic | 40.0% |
| GAAAGGATCCCATGAGTTTA+AGG | - | chr8_3:10108505-10108524 | Msa1275860:five_prime_UTR | 40.0% | |
| TTTGGAGACAATCACACCAA+AGG | - | chr8_3:10108556-10108575 | Msa1275860:five_prime_UTR | 40.0% | |
| ACTTCAAGGGTTTCAACCTT+TGG | + | chr8_3:10108575-10108594 | None:intergenic | 40.0% | |
| ATCCATGCATGATCCTAATG+AGG | - | chr8_3:10108616-10108635 | Msa1275860:five_prime_UTR | 40.0% | |
| TTCCTCATTAGGATCATGCA+TGG | + | chr8_3:10108621-10108640 | None:intergenic | 40.0% | |
| GATCCTAATGAGGAATACCT+TGG | - | chr8_3:10108626-10108645 | Msa1275860:five_prime_UTR | 40.0% | |
| ! | TGTCCAAGGTATTCCTCATT+AGG | + | chr8_3:10108632-10108651 | None:intergenic | 40.0% |
| TACCTTGGACAAAGAACTGA+AGG | - | chr8_3:10108641-10108660 | Msa1275860:five_prime_UTR | 40.0% | |
| GAGTCATTGAAAAACCGGTA+TGG | - | chr8_3:10108764-10108783 | Msa1275860:intron | 40.0% | |
| AGAGTGTATGGAAACTTCAC+AGG | + | chr8_3:10108791-10108810 | None:intergenic | 40.0% | |
| ACTCTTCTTTATCCTTCCAG+TGG | - | chr8_3:10108806-10108825 | Msa1275860:intron | 40.0% | |
| ACTTGATCAATTAGTGCAGC+TGG | + | chr8_3:10108961-10108980 | None:intergenic | 40.0% | |
| CATCAAGGGTCAAACTCACA+AGG | + | chr8_3:10105516-10105535 | None:intergenic | 45.0% | |
| GCGCATCTTCTTTACCAACA+AGG | - | chr8_3:10105606-10105625 | Msa1275860:exon | 45.0% | |
| GAGCTGGTGTTTCACTTAGA+AGG | + | chr8_3:10105832-10105851 | None:intergenic | 45.0% | |
| ! | ACACTTTTCCTTACCCTCGA+AGG | - | chr8_3:10106026-10106045 | Msa1275860:CDS | 45.0% |
| ! | CACTTTTCCTTACCCTCGAA+GGG | - | chr8_3:10106027-10106046 | Msa1275860:CDS | 45.0% |
| TACCAGATCTTACCCTTCGA+GGG | + | chr8_3:10106042-10106061 | None:intergenic | 45.0% | |
| CAGATCCAAAGACTGAGAGT+CGG | - | chr8_3:10106245-10106264 | Msa1275860:CDS | 45.0% | |
| ! | GTTTGGCTCCAAGTGTTCTT+TGG | + | chr8_3:10107004-10107023 | None:intergenic | 45.0% |
| AGAACACTTGGAGCCAAACA+TGG | - | chr8_3:10107005-10107024 | Msa1275860:intron | 45.0% | |
| ACTTGGAGCCAAACATGGAT+GGG | - | chr8_3:10107010-10107029 | Msa1275860:intron | 45.0% | |
| CAACAGCATATGCCTTTGCA+AGG | + | chr8_3:10107409-10107428 | None:intergenic | 45.0% | |
| ! | GATTGGGTTTTCGCTGAAGA+AGG | - | chr8_3:10107779-10107798 | Msa1275860:intron | 45.0% |
| ! | TATGGGCTGCTATCAAGTCA+TGG | - | chr8_3:10108207-10108226 | Msa1275860:intron | 45.0% |
| ! | ATGGGCTGCTATCAAGTCAT+GGG | - | chr8_3:10108208-10108227 | Msa1275860:intron | 45.0% |
| GAACTTGTAGAAGTGGGTCA+TGG | - | chr8_3:10108308-10108327 | Msa1275860:five_prime_UTR | 45.0% | |
| ACTCTTGCACTACCCTCATA+TGG | - | chr8_3:10108384-10108403 | Msa1275860:five_prime_UTR | 45.0% | |
| GTGCTGAAGCAATCCATATG+AGG | + | chr8_3:10108400-10108419 | None:intergenic | 45.0% | |
| AACTCATGGGATCCTTTCTC+TGG | + | chr8_3:10108503-10108522 | None:intergenic | 45.0% | |
| AGCGAGCTCCTTAAACTCAT+GGG | + | chr8_3:10108516-10108535 | None:intergenic | 45.0% | |
| TAGCGAGCTCCTTAAACTCA+TGG | + | chr8_3:10108517-10108536 | None:intergenic | 45.0% | |
| TGAGTTTAAGGAGCTCGCTA+AGG | - | chr8_3:10108517-10108536 | Msa1275860:five_prime_UTR | 45.0% | |
| CACCTTCAGTTCTTTGTCCA+AGG | + | chr8_3:10108646-10108665 | None:intergenic | 45.0% | |
| AACGGGTGACCGCAAAGAAT+GGG | - | chr8_3:10105901-10105920 | Msa1275860:CDS | 50.0% | |
| GTGACCGCAAAGAATGGGAT+AGG | - | chr8_3:10105906-10105925 | Msa1275860:CDS | 50.0% | |
| TTTGGGTGAGCCAGACAAAG+AGG | - | chr8_3:10105955-10105974 | Msa1275860:CDS | 50.0% | |
| ! | CCAGACAAAGAGGCTGACTT+GGG | - | chr8_3:10105965-10105984 | Msa1275860:CDS | 50.0% |
| ACTTGGGTCGTCCAGTTCTT+GGG | - | chr8_3:10105981-10106000 | Msa1275860:CDS | 50.0% | |
| TCTTGGGGGATCAAGCACTT+TGG | - | chr8_3:10105997-10106016 | Msa1275860:CDS | 50.0% | |
| GATCTTACCCTTCGAGGGTA+AGG | + | chr8_3:10106037-10106056 | None:intergenic | 50.0% | |
| TACCCTCGAAGGGTAAGATC+TGG | - | chr8_3:10106037-10106056 | Msa1275860:CDS | 50.0% | |
| CTACCAGATCTTACCCTTCG+AGG | + | chr8_3:10106043-10106062 | None:intergenic | 50.0% | |
| TCCAAAGACTGAGAGTCGGA+AGG | - | chr8_3:10106249-10106268 | Msa1275860:CDS | 50.0% | |
| CCAAAGACTGAGAGTCGGAA+GGG | - | chr8_3:10106250-10106269 | Msa1275860:CDS | 50.0% | |
| CCTGCAATCACTTGTGGTGT+TGG | + | chr8_3:10106484-10106503 | None:intergenic | 50.0% | |
| CCAACACCACAAGTGATTGC+AGG | - | chr8_3:10106481-10106500 | Msa1275860:intron | 50.0% | |
| TCATGCATGGATGGCTGATG+AGG | - | chr8_3:10106737-10106756 | Msa1275860:CDS | 50.0% | |
| CACTTGGAGCCAAACATGGA+TGG | - | chr8_3:10107009-10107028 | Msa1275860:intron | 50.0% | |
| CTTGGAGCCAAACATGGATG+GGG | - | chr8_3:10107011-10107030 | Msa1275860:intron | 50.0% | |
| ACTGTGACCCCATCCATGTT+TGG | + | chr8_3:10107021-10107040 | None:intergenic | 50.0% | |
| GGATGGGGTCACAGTAAAAG+AGG | - | chr8_3:10107026-10107045 | Msa1275860:intron | 50.0% | |
| GACGATGATTCTTCCCCACA+TGG | - | chr8_3:10108134-10108153 | Msa1275860:five_prime_UTR | 50.0% | |
| TCAGAAGACGCAGACCATGT+GGG | + | chr8_3:10108151-10108170 | None:intergenic | 50.0% | |
| ATCAGAAGACGCAGACCATG+TGG | + | chr8_3:10108152-10108171 | None:intergenic | 50.0% | |
| TGGTCTGCGTCTTCTGATAG+AGG | - | chr8_3:10108154-10108173 | Msa1275860:intron | 50.0% | |
| !! | TTGTAGGCTTCTACTGGCTC+TGG | + | chr8_3:10108686-10108705 | None:intergenic | 50.0% |
| GAAACTTCACAGGCCCATAC+CGG | + | chr8_3:10108781-10108800 | None:intergenic | 50.0% | |
| CTTTATCCTTCCAGTGGACC+AGG | - | chr8_3:10108812-10108831 | Msa1275860:intron | 50.0% | |
| ACTGTTGGGAATCCCTCTAC+CGG | + | chr8_3:10108843-10108862 | None:intergenic | 50.0% | |
| GAACGGGTGACCGCAAAGAA+TGG | - | chr8_3:10105900-10105919 | Msa1275860:CDS | 55.0% | |
| GCCAGACAAAGAGGCTGACT+TGG | - | chr8_3:10105964-10105983 | Msa1275860:CDS | 55.0% | |
| CCCAAGTCAGCCTCTTTGTC+TGG | + | chr8_3:10105968-10105987 | None:intergenic | 55.0% | |
| GACTTGGGTCGTCCAGTTCT+TGG | - | chr8_3:10105980-10105999 | Msa1275860:CDS | 55.0% | |
| CTTGGGTCGTCCAGTTCTTG+GGG | - | chr8_3:10105982-10106001 | Msa1275860:CDS | 55.0% | |
| TTGGGTCGTCCAGTTCTTGG+GGG | - | chr8_3:10105983-10106002 | Msa1275860:CDS | 55.0% | |
| GTGCTTGATCCCCCAAGAAC+TGG | + | chr8_3:10105995-10106014 | None:intergenic | 55.0% | |
| TGGGGGATCAAGCACTTTGG+AGG | - | chr8_3:10106000-10106019 | Msa1275860:CDS | 55.0% | |
| GGGGGATCAAGCACTTTGGA+GGG | - | chr8_3:10106001-10106020 | Msa1275860:CDS | 55.0% | |
| CCCTTCCGACTCTCAGTCTT+TGG | + | chr8_3:10106253-10106272 | None:intergenic | 55.0% | |
| GTCACCAACTCGTCAGCCAT+TGG | - | chr8_3:10107444-10107463 | Msa1275860:intron | 55.0% | |
| CTCACCAATGGCTGACGAGT+TGG | + | chr8_3:10107451-10107470 | None:intergenic | 55.0% | |
| GTCATCGTGCCACGATAGTG+TGG | + | chr8_3:10107653-10107672 | None:intergenic | 55.0% | |
| CAGAAGACGCAGACCATGTG+GGG | + | chr8_3:10108150-10108169 | None:intergenic | 55.0% | |
| GTCAATCCTGGTCCACTGGA+AGG | + | chr8_3:10108821-10108840 | None:intergenic | 55.0% | |
| TCCAGTGGACCAGGATTGAC+CGG | - | chr8_3:10108821-10108840 | Msa1275860:intron | 55.0% | |
| GACCAGGATTGACCGGTAGA+GGG | - | chr8_3:10108828-10108847 | Msa1275860:intron | 55.0% | |
| ATCCCTCTACCGGTCAATCC+TGG | + | chr8_3:10108833-10108852 | None:intergenic | 55.0% | |
| ACCGGTCAATCCTGGTCCAC+TGG | + | chr8_3:10108825-10108844 | None:intergenic | 60.0% | |
| GGACCAGGATTGACCGGTAG+AGG | - | chr8_3:10108827-10108846 | Msa1275860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 10105469 | 10109028 | 10105469 | ID=Msa1275860;Name=Msa1275860 |
| chr8_3 | mRNA | 10105469 | 10109028 | 10105469 | ID=Msa1275860-mRNA-1;Parent=Msa1275860;Name=Msa1275860-mRNA-1;_AED=0.32;_eAED=0.32;_QI=754|1|1|1|0.75|0.55|9|154|502 |
| chr8_3 | exon | 10105469 | 10106376 | 10105469 | ID=Msa1275860-mRNA-1:exon:4231;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10106672 | 10106935 | 10106672 | ID=Msa1275860-mRNA-1:exon:4230;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10107032 | 10107345 | 10107032 | ID=Msa1275860-mRNA-1:exon:4229;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10107450 | 10107557 | 10107450 | ID=Msa1275860-mRNA-1:exon:4228;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10107682 | 10107767 | 10107682 | ID=Msa1275860-mRNA-1:exon:4227;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10107995 | 10108160 | 10107995 | ID=Msa1275860-mRNA-1:exon:4226;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10108241 | 10108475 | 10108241 | ID=Msa1275860-mRNA-1:exon:4225;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10108497 | 10108673 | 10108497 | ID=Msa1275860-mRNA-1:exon:4224;Parent=Msa1275860-mRNA-1 |
| chr8_3 | exon | 10108870 | 10109028 | 10108870 | ID=Msa1275860-mRNA-1:exon:4223;Parent=Msa1275860-mRNA-1 |
| chr8_3 | five_prime_UTR | 10108870 | 10109028 | 10108870 | ID=Msa1275860-mRNA-1:five_prime_utr;Parent=Msa1275860-mRNA-1 |
| chr8_3 | five_prime_UTR | 10108497 | 10108673 | 10108497 | ID=Msa1275860-mRNA-1:five_prime_utr;Parent=Msa1275860-mRNA-1 |
| chr8_3 | five_prime_UTR | 10108241 | 10108475 | 10108241 | ID=Msa1275860-mRNA-1:five_prime_utr;Parent=Msa1275860-mRNA-1 |
| chr8_3 | five_prime_UTR | 10107995 | 10108160 | 10107995 | ID=Msa1275860-mRNA-1:five_prime_utr;Parent=Msa1275860-mRNA-1 |
| chr8_3 | five_prime_UTR | 10107751 | 10107767 | 10107751 | ID=Msa1275860-mRNA-1:five_prime_utr;Parent=Msa1275860-mRNA-1 |
| chr8_3 | CDS | 10107682 | 10107750 | 10107682 | ID=Msa1275860-mRNA-1:cds;Parent=Msa1275860-mRNA-1 |
| chr8_3 | CDS | 10107450 | 10107557 | 10107450 | ID=Msa1275860-mRNA-1:cds;Parent=Msa1275860-mRNA-1 |
| chr8_3 | CDS | 10107032 | 10107345 | 10107032 | ID=Msa1275860-mRNA-1:cds;Parent=Msa1275860-mRNA-1 |
| chr8_3 | CDS | 10106672 | 10106935 | 10106672 | ID=Msa1275860-mRNA-1:cds;Parent=Msa1275860-mRNA-1 |
| chr8_3 | CDS | 10105623 | 10106376 | 10105623 | ID=Msa1275860-mRNA-1:cds;Parent=Msa1275860-mRNA-1 |
| chr8_3 | three_prime_UTR | 10105469 | 10105622 | 10105469 | ID=Msa1275860-mRNA-1:three_prime_utr;Parent=Msa1275860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
