AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160580 MtrunA17_Chr1g0173761 93.750 384 24 0 1 384 1 384 0.0 758
Msa0160580 MtrunA17_Chr1g0173751 86.198 384 53 0 1 384 1 384 0.0 693
Msa0160580 MtrunA17_Chr2g0292621 76.240 383 90 1 1 383 1 382 0.0 616
Msa0160580 MtrunA17_Chr2g0292611 70.896 402 95 2 3 383 22 422 0.0 595
Msa0160580 MtrunA17_Chr2g0292581 67.273 385 124 2 1 384 1 384 0.0 566
Msa0160580 MtrunA17_Chr4g0051711 60.769 390 141 4 1 382 1 386 2.32e-175 505
Msa0160580 MtrunA17_Chr4g0051701 60.256 390 144 3 1 382 1 387 2.07e-173 500
Msa0160580 MtrunA17_Chr4g0051731 62.921 356 129 2 28 383 12 364 2.71e-173 499
Msa0160580 MtrunA17_Chr4g0051761 58.312 391 151 3 1 383 23 409 7.88e-171 494
Msa0160580 MtrunA17_Chr4g0051821 59.591 391 146 4 1 383 1 387 3.07e-170 492
Msa0160580 MtrunA17_Chr4g0051681 57.801 391 153 4 1 382 1 388 1.32e-167 486
Msa0160580 MtrunA17_Chr6g0468811 58.568 391 150 5 1 383 1 387 4.37e-165 491
Msa0160580 MtrunA17_Chr6g0468791 60.331 363 132 4 28 383 24 381 4.46e-164 476
Msa0160580 MtrunA17_Chr8g0353201 42.211 398 199 9 1 383 1 382 9.35e-114 347
Msa0160580 MtrunA17_Chr1g0180281 45.226 398 189 10 1 383 5 388 4.98e-112 343
Msa0160580 MtrunA17_Chr6g0487311 41.262 412 197 10 1 383 1 396 5.29e-111 340
Msa0160580 MtrunA17_Chr1g0180271 44.724 398 191 10 1 383 5 388 8.00e-110 337
Msa0160580 MtrunA17_Chr6g0487401 42.462 398 178 9 1 383 33 394 1.56e-109 336
Msa0160580 MtrunA17_Chr4g0051791 54.478 268 87 3 116 383 9 241 3.35e-101 310
Msa0160580 MtrunA17_Chr2g0292631 76.966 178 41 0 1 178 1 178 1.86e-95 291
Msa0160580 MtrunA17_Chr6g0471901 36.181 398 175 9 1 383 1 334 4.30e-83 265
Msa0160580 MtrunA17_Chr2g0292641 74.483 145 34 1 251 395 1 142 5.47e-69 221
Msa0160580 MtrunA17_Chr1g0162771 40.265 226 114 6 1 211 1 220 6.22e-49 170
Msa0160580 MtrunA17_Chr4g0051801 53.061 98 43 1 1 98 1 95 2.87e-28 108
Msa0160580 MtrunA17_Chr1g0162761 63.889 72 26 0 309 380 1 72 1.03e-26 103
Msa0160580 MtrunA17_Chr8g0361881 51.786 56 27 0 492 547 2 57 1.88e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160580 AT5G61820.2 51.786 392 159 7 14 383 11 394 1.99e-134 402
Msa0160580 AT5G61820.1 51.786 392 159 7 14 383 11 394 1.99e-134 402

Find 154 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTCCATTTCCATATTT+TGG -0.024150 1_4:+33377376 None:intergenic
ATAATACCTGATTGGCTATT+TGG 0.105184 1_4:+33378560 None:intergenic
CAATTGGGATGTTAACTTTA+TGG 0.150822 1_4:-33378153 Msa0160580:CDS
TTATAGATGTTTGGTACTTC+TGG 0.216333 1_4:-33376932 Msa0160580:intron
CATTTCTCCACATACCCTTT+TGG 0.274775 1_4:+33378404 None:intergenic
TGTAATTCAAACCCAAAATA+TGG 0.286004 1_4:-33377388 Msa0160580:CDS
GGCTCTATCAAGATACTTAA+TGG 0.299414 1_4:-33377298 Msa0160580:CDS
GCAATTGGATCAACTCTATA+TGG 0.301761 1_4:-33377700 Msa0160580:CDS
ATCTTGCACTTGCTATTATC+AGG 0.317724 1_4:+33378236 None:intergenic
AACAGTGTATTTCAAATAGA+TGG 0.319094 1_4:+33378184 None:intergenic
TCCTGGATTTAGTTCAATCT+TGG 0.319107 1_4:+33378751 None:intergenic
ACACTGTTACGTGGATCAAT+TGG 0.329353 1_4:-33378169 Msa0160580:CDS
GGCAAGCATTACGAGCTTCT+AGG 0.338915 1_4:-33374681 Msa0160580:CDS
GCTTTGAGTCCAAATTATAA+AGG 0.356541 1_4:-33378275 Msa0160580:CDS
TCCTTCCCGTGTTCATGTGC+GGG 0.360925 1_4:+33376456 None:intergenic
TTAGGACAATACTATGGTCT+TGG 0.372734 1_4:-33378500 Msa0160580:CDS
ATGAGGAATGTGGTATTTAT+AGG 0.373224 1_4:+33374743 None:intergenic
TATAGATGTTTGGTACTTCT+GGG 0.375516 1_4:-33376931 Msa0160580:intron
TTAAGAAAATAATACCTGAT+TGG 0.381244 1_4:+33378552 None:intergenic
GCGAGCTTCCCAATGCAAAA+TGG 0.381323 1_4:-33377763 Msa0160580:CDS
AATGGAGGTTATGTCATCTA+TGG 0.382620 1_4:-33377745 Msa0160580:CDS
CGGAGTGCCCATGCCATGCT+CGG 0.383084 1_4:+33374908 None:intergenic
ACATATATTCCAGACCCTTA+TGG 0.385689 1_4:-33378455 Msa0160580:CDS
CTTTGAGTCCAAATTATAAA+GGG 0.386608 1_4:-33378274 Msa0160580:CDS
CTAGCACTAGTGTTCTTGTT+AGG 0.394049 1_4:-33378842 Msa0160580:CDS
AATGTAACAAAAGATGAAAA+TGG 0.403395 1_4:-33378302 Msa0160580:CDS
ACTTTATTTGAAACAAATCC+TGG 0.406209 1_4:+33378734 None:intergenic
CCTGGATTTAGTTCAATCTT+GGG 0.408000 1_4:+33378752 None:intergenic
CATCTACATACAGGTGCAAT+TGG 0.410018 1_4:-33377715 Msa0160580:CDS
CAAAAGGGTATGTGGAGAAA+TGG 0.410394 1_4:-33378403 Msa0160580:CDS
TGCTTCCATACAAGATGTCT+TGG 0.414480 1_4:+33375027 None:intergenic
TCAAACCCAAAATATGGAAA+TGG 0.417987 1_4:-33377382 Msa0160580:CDS
TATGCGCCCCGAGCATGGCA+TGG 0.426299 1_4:-33374916 Msa0160580:CDS
CGGGGCGCATAGCCATGCTC+GGG 0.427958 1_4:+33374928 None:intergenic
GTGACACCAAATAGCCAATC+AGG 0.433825 1_4:-33378566 Msa0160580:CDS
GGAGTGCCCATGCCATGCTC+GGG 0.437176 1_4:+33374909 None:intergenic
AATGAGAAAGGATATGTTGT+AGG 0.440342 1_4:-33377346 Msa0160580:CDS
CATGGAATGGTCTCATGCGC+AGG 0.443081 1_4:+33376492 None:intergenic
ATCCTCCTCTTGTTCTCTCT+AGG 0.443819 1_4:-33376256 Msa0160580:CDS
ATCAAACTTATCTACACCAT+TGG 0.445662 1_4:-33378619 Msa0160580:CDS
ATGACTATAACGTCGGTTGA+TGG 0.445952 1_4:+33375458 None:intergenic
TTGAGTGAAATATGACCTCT+TGG 0.446302 1_4:+33378692 None:intergenic
AATGGTGTAGATAAGTTTGA+TGG 0.446934 1_4:+33378621 None:intergenic
CATTCTCATTAGCTGCTACT+AGG 0.447390 1_4:-33378814 Msa0160580:CDS
TACGAGGGGTGTGGATGATC+GGG 0.452472 1_4:-33378357 Msa0160580:CDS
TCCTCACTCCAAGTTTCTCT+AGG 0.453023 1_4:-33374643 None:intergenic
TTACCAACTTCTATACCATA+AGG 0.456109 1_4:+33378440 None:intergenic
ATGCGCCCCGAGCATGGCAT+GGG 0.462498 1_4:-33374915 Msa0160580:CDS
CACTGTTACGTGGATCAATT+GGG 0.464348 1_4:-33378168 Msa0160580:CDS
TCCTCCTCTTGTTCTCTCTA+GGG 0.467818 1_4:-33376255 Msa0160580:intron
CCCAAGATTGAACTAAATCC+AGG 0.471202 1_4:-33378752 Msa0160580:CDS
AATCCTGCTGAAATTCCAAA+AGG 0.472130 1_4:-33378419 Msa0160580:CDS
GACAAGCATCAGAAGCTTCA+AGG 0.472696 1_4:-33376291 Msa0160580:CDS
AGGGACACAGGTGTCCTAGA+TGG 0.473447 1_4:+33375501 None:intergenic
GCTTCCATACAAGATGTCTT+GGG 0.477026 1_4:+33375028 None:intergenic
ATACAAGATGTCTTGGGACC+TGG 0.478503 1_4:+33375034 None:intergenic
AGGTCCCAAGACATCTTGTA+TGG 0.479876 1_4:-33375032 Msa0160580:CDS
ATACGAGGGGTGTGGATGAT+CGG 0.480331 1_4:-33378358 Msa0160580:CDS
TTAAGTATCTTGATAGAGCC+TGG 0.486860 1_4:+33377301 None:intergenic
CACGAAGAAATCAAGCAAAT+CGG 0.489706 1_4:-33375155 Msa0160580:CDS
ATGGCTATGCGCCCCGAGCA+TGG 0.490467 1_4:-33374921 Msa0160580:CDS
CTCCTTCCCGTGTTCATGTG+CGG 0.490548 1_4:+33376455 None:intergenic
GACCCTTATGGTATAGAAGT+TGG 0.491257 1_4:-33378443 Msa0160580:CDS
TCAAACTTATCTACACCATT+GGG 0.498383 1_4:-33378618 Msa0160580:CDS
TATGGAAATGGAAAGGAAGC+AGG 0.499358 1_4:-33377370 Msa0160580:CDS
TCAAATATATAAACGTTGAC+CGG 0.504839 1_4:+33378128 None:intergenic
GGATGTTAACTTTATGGTGC+CGG 0.509600 1_4:-33378147 Msa0160580:CDS
AAGCTATCGGATAAGTCTAA+AGG 0.510457 1_4:-33378089 Msa0160580:CDS
GCAAGCATTACGAGCTTCTA+GGG 0.512915 1_4:-33374680 Msa0160580:CDS
CATCAGAAGCTTCAAGGAAG+AGG 0.513840 1_4:-33376285 Msa0160580:CDS
TACAAGATGTCTTGGGACCT+GGG 0.515300 1_4:+33375035 None:intergenic
GTTCATGTGCGGGGCTCATG+AGG 0.518180 1_4:+33376466 None:intergenic
GGAGTACTCTTGCAAGGCAC+GGG 0.518663 1_4:-33376910 Msa0160580:intron
GGGGCACATAGACCATGCTC+AGG 0.518901 1_4:+33374948 None:intergenic
TCGGGGCGCATAGCCATGCT+CGG 0.520914 1_4:+33374927 None:intergenic
GGGAGTACTCTTGCAAGGCA+CGG 0.525664 1_4:-33376911 Msa0160580:CDS
AAGGAAGCAGGAAATGAGAA+AGG 0.525734 1_4:-33377358 Msa0160580:CDS
ACTTCTATACCATAAGGGTC+TGG 0.525886 1_4:+33378446 None:intergenic
GCTCATGAGGCAGCATGGAA+TGG 0.528729 1_4:+33376479 None:intergenic
TACCAACTTCTATACCATAA+GGG 0.529409 1_4:+33378441 None:intergenic
AAACATACCCTAGAGAAACT+TGG 0.530345 1_4:+33374635 None:intergenic
CACTCACGGCTCCCTGAGCA+TGG 0.532182 1_4:-33374960 Msa0160580:CDS
AGGAGGGGAAAATTCCATCT+AGG 0.535106 1_4:-33375515 Msa0160580:CDS
ATCTTGATAGAGCCTGGTTG+AGG 0.538946 1_4:+33377307 None:intergenic
GGAGTTGGTCATCTACATAC+AGG 0.539806 1_4:-33377724 Msa0160580:CDS
TGGATCAACTCTATATGGAC+AGG 0.540193 1_4:-33377695 Msa0160580:intron
CCTCACTCCAAGTTTCTCTA+GGG 0.540793 1_4:-33374642 None:intergenic
AGAGAAACTTGGAGTGAGGA+GGG 0.542887 1_4:+33374646 None:intergenic
ATTGTCCTAAAACATCCTCT+TGG 0.543744 1_4:+33378513 None:intergenic
AACGAAGCGTTTCAAGAGGA+TGG 0.546490 1_4:-33374702 Msa0160580:CDS
GCTGAGCTAGTTGATGATGC+AGG 0.547375 1_4:-33378659 Msa0160580:CDS
ATGGAATGGTCTCATGCGCA+GGG 0.547815 1_4:+33376493 None:intergenic
TGGTCTATGTGCCCCGAGCA+TGG 0.554910 1_4:-33374940 Msa0160580:CDS
TGGTGAAACTTTAACTCTAG+AGG 0.557429 1_4:-33377278 Msa0160580:intron
CGAATCATGCCGAGGGACAC+AGG 0.567289 1_4:+33375489 None:intergenic
ATGAGCCCCGCACATGAACA+CGG 0.567455 1_4:-33376462 Msa0160580:CDS
TAGAGAAACTTGGAGTGAGG+AGG 0.567910 1_4:+33374645 None:intergenic
GGTTATGTCATCTATGGAGT+TGG 0.568181 1_4:-33377739 Msa0160580:CDS
CAACCATGCTCGAGGCACAT+AGG 0.568393 1_4:+33374846 None:intergenic
GACTGATACTTTGAAGCTAT+CGG 0.573866 1_4:-33378102 Msa0160580:CDS
GCATTACGAGCTTCTAGGGA+AGG 0.576305 1_4:-33374676 Msa0160580:CDS
AGCAAGTGCAAGATGAGGAA+AGG 0.579934 1_4:-33378227 Msa0160580:CDS
ATCCTGCTGAAATTCCAAAA+GGG 0.582436 1_4:-33378418 Msa0160580:CDS
TGAATGAAAAGTTGTGAATG+AGG 0.583349 1_4:+33374726 None:intergenic
CCCAAAATATGGAAATGGAA+AGG 0.583875 1_4:-33377377 Msa0160580:CDS
GAGGGGTGTGGATGATCGGG+TGG 0.585742 1_4:-33378354 Msa0160580:CDS
CCCCGCACATGAACACGGGA+AGG 0.586514 1_4:-33376457 Msa0160580:CDS
CATCCTATGTGCCTCGAGCA+TGG 0.590572 1_4:-33374849 Msa0160580:intron
TGTAGATAAGTTTGATGGAG+AGG 0.591197 1_4:+33378626 None:intergenic
GTGTGAATGTTAGGATGGGA+AGG 0.591514 1_4:-33377416 Msa0160580:intron
GCGGGGCTCATGAGGCAGCA+TGG 0.591553 1_4:+33376474 None:intergenic
CCTTCCCGTGTTCATGTGCG+GGG 0.594556 1_4:+33376457 None:intergenic
GAGTATCAAGCATGATTGCA+AGG 0.597085 1_4:-33378063 Msa0160580:intron
CGCACATGAACACGGGAAGG+AGG 0.597824 1_4:-33376454 Msa0160580:intron
TGCAATTGATACGAGGGGTG+TGG 0.598035 1_4:-33378366 Msa0160580:CDS
TAACAAGATGACTATAACGT+CGG 0.598103 1_4:+33375451 None:intergenic
TGAAATTCCAAAAGGGTATG+TGG 0.598204 1_4:-33378411 Msa0160580:CDS
TTGAGTCCAAATTATAAAGG+GGG 0.598573 1_4:-33378272 Msa0160580:CDS
AAAAGTAATGTGAGTGATAG+CGG 0.599635 1_4:-33377805 Msa0160580:CDS
TGATGATTGTATCTCAGCAA+TGG 0.599743 1_4:-33378883 Msa0160580:CDS
AGGGGTGTGGATGATCGGGT+GGG 0.600563 1_4:-33378353 Msa0160580:CDS
TCTAGGACACCTGTGTCCCT+CGG 0.605281 1_4:-33375498 Msa0160580:CDS
TCATAACGAAGCGTTTCAAG+AGG 0.607455 1_4:-33374706 Msa0160580:CDS
CTTCTGGGAGTACTCTTGCA+AGG 0.609773 1_4:-33376916 Msa0160580:CDS
TATGCATTGGAACGCACTCA+CGG 0.610481 1_4:-33374974 Msa0160580:CDS
GAGTGCCCATGCCATGCTCG+GGG 0.610896 1_4:+33374910 None:intergenic
TCCACTTGTTATCCTCAACC+AGG 0.612933 1_4:-33377319 Msa0160580:CDS
TACTCGACGAATCATGCCGA+GGG 0.613105 1_4:+33375482 None:intergenic
TTTGAGTCCAAATTATAAAG+GGG 0.613614 1_4:-33378273 Msa0160580:CDS
TCACTCTGTAACGTCTTCTG+AGG 0.614574 1_4:+33375069 None:intergenic
ACAATACTATGGTCTTGGAT+CGG 0.617680 1_4:-33378495 Msa0160580:CDS
TGTTCATGCAATTGATACGA+GGG 0.617695 1_4:-33378372 Msa0160580:CDS
AAGCTAGCAGTATAATGCAA+AGG 0.618354 1_4:-33376313 Msa0160580:CDS
GAAGCAAACACCCAAAAGAA+CGG 0.621896 1_4:-33375010 Msa0160580:CDS
CATACCCTAGAGAGAACAAG+AGG 0.626025 1_4:+33376251 None:intergenic
CTGAGCTAGTTGATGATGCA+GGG 0.637972 1_4:-33378658 Msa0160580:CDS
TATGATGTTGAGTTTCCAAG+AGG 0.638000 1_4:-33378707 Msa0160580:CDS
CAAGCATTCAACCATGCTCG+AGG 0.641102 1_4:+33374838 None:intergenic
GCCTGGTTGAGGATAACAAG+TGG 0.643762 1_4:+33377318 None:intergenic
TGAGCCCCGCACATGAACAC+GGG 0.643824 1_4:-33376461 Msa0160580:CDS
CCCTAGAGAAACTTGGAGTG+AGG 0.645171 1_4:+33374642 None:intergenic
ACCCTAGAGAGAACAAGAGG+AGG 0.646367 1_4:+33376254 None:intergenic
ATAATAGCAAGTGCAAGATG+AGG 0.647427 1_4:-33378232 Msa0160580:CDS
GTGTGCATAAAATGCATGCT+CGG 0.655247 1_4:+33374888 None:intergenic
AGCTTCCCAATGCAAAATGG+AGG 0.656715 1_4:-33377760 Msa0160580:CDS
AGTATCTTATAACAACCCAA+TGG 0.662577 1_4:+33378603 None:intergenic
ATTTGAAATACACTGTTACG+TGG 0.664226 1_4:-33378178 Msa0160580:CDS
ATGTTCATGCAATTGATACG+AGG 0.665580 1_4:-33378373 Msa0160580:CDS
GGGGCGCATAGCCATGCTCG+GGG 0.668483 1_4:+33374929 None:intergenic
GGGCACATAGACCATGCTCA+GGG 0.672964 1_4:+33374949 None:intergenic
TGGAATGGTCTCATGCGCAG+GGG 0.682425 1_4:+33376494 None:intergenic
AAAGTTGTGAATGAGGAATG+TGG 0.693802 1_4:+33374733 None:intergenic
GTTCATGCAATTGATACGAG+GGG 0.696381 1_4:-33378371 Msa0160580:CDS
ATACTCGACGAATCATGCCG+AGG 0.712891 1_4:+33375481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGATAGTATAATTATAAA+AGG + chr1_4:33376035-33376054 None:intergenic 10.0%
!!! TTTATTTATTTTAAATGTCT+CGG + chr1_4:33376558-33376577 None:intergenic 10.0%
!!! ATTATTTTCTTAAGAAATGA+TGG - chr1_4:33374986-33375005 Msa0160580:CDS 15.0%
!!! TAAATTTTCACTTTTTTCAT+AGG - chr1_4:33375980-33375999 Msa0160580:intron 15.0%
!!! TCTTTAAAATCATATCATTT+TGG - chr1_4:33376087-33376106 Msa0160580:intron 15.0%
!!! TTATTTATTTTAAATGTCTC+GGG + chr1_4:33376557-33376576 None:intergenic 15.0%
!! AAAAAAATTCAAAACACTTA+TGG + chr1_4:33376808-33376827 None:intergenic 15.0%
!!! AAAGTTTTTATTCATTTGTT+TGG - chr1_4:33377401-33377420 Msa0160580:CDS 15.0%
!! TTAAGAAAATAATACCTGAT+TGG + chr1_4:33374979-33374998 None:intergenic 20.0%
!! AATGTAACAAAAGATGAAAA+TGG - chr1_4:33375226-33375245 Msa0160580:intron 20.0%
!!! TCAAATAGATGGTTTTTTTT+GGG + chr1_4:33375336-33375355 None:intergenic 20.0%
!!! TTCAAATAGATGGTTTTTTT+TGG + chr1_4:33375337-33375356 None:intergenic 20.0%
!!! TTATTGTTTTACATAGTCTA+TGG - chr1_4:33375530-33375549 Msa0160580:intron 20.0%
!!! TAAATTTGAGATCATTAAGT+AGG + chr1_4:33375570-33375589 None:intergenic 20.0%
!! AGAGATTATTCTTTAAATAC+AGG - chr1_4:33375674-33375693 Msa0160580:intron 20.0%
!!! TAACTCCTTTGTAATTTTAA+GGG + chr1_4:33375960-33375979 None:intergenic 20.0%
!!! ATAACTCCTTTGTAATTTTA+AGG + chr1_4:33375961-33375980 None:intergenic 20.0%
!!! TTAAAATCATATCATTTTGG+TGG - chr1_4:33376090-33376109 Msa0160580:intron 20.0%
!! AACAAAGTAATCAAAATGAT+AGG + chr1_4:33376369-33376388 None:intergenic 20.0%
!!! TGATTACTTTGTTATCAAAA+TGG - chr1_4:33376376-33376395 Msa0160580:intron 20.0%
!! TACAATAAAAACAAATTCTG+AGG + chr1_4:33376406-33376425 None:intergenic 20.0%
!! AAGATATCCAACAAAAATAT+GGG + chr1_4:33376501-33376520 None:intergenic 20.0%
!! TAAGATATCCAACAAAAATA+TGG + chr1_4:33376502-33376521 None:intergenic 20.0%
!!! TGTGTTATTTTATAGATGTT+TGG - chr1_4:33376587-33376606 Msa0160580:intron 20.0%
!! ATAGAATCCAACAAATAAAA+TGG + chr1_4:33377377-33377396 None:intergenic 20.0%
!! TGTGTTTAATATAAACATGA+GGG + chr1_4:33377930-33377949 None:intergenic 20.0%
!! TTGTGTTTAATATAAACATG+AGG + chr1_4:33377931-33377950 None:intergenic 20.0%
!! TCATGTTTATATTAAACACA+AGG - chr1_4:33377930-33377949 Msa0160580:intron 20.0%
!! TTCAATATTGAATTTGACAA+TGG + chr1_4:33377968-33377987 None:intergenic 20.0%
!! AAAAACAGATATTTATGCAT+TGG - chr1_4:33378541-33378560 Msa0160580:CDS 20.0%
!! ACTTTATTTGAAACAAATCC+TGG + chr1_4:33374797-33374816 None:intergenic 25.0%
!! CATCTTTTGTTACATTGTAT+AGG + chr1_4:33375222-33375241 None:intergenic 25.0%
! CTTTGAGTCCAAATTATAAA+GGG - chr1_4:33375254-33375273 Msa0160580:intron 25.0%
! TTTGAGTCCAAATTATAAAG+GGG - chr1_4:33375255-33375274 Msa0160580:intron 25.0%
! AACAGTGTATTTCAAATAGA+TGG + chr1_4:33375347-33375366 None:intergenic 25.0%
! TCAAATATATAAACGTTGAC+CGG + chr1_4:33375403-33375422 None:intergenic 25.0%
! AAGTAGAAAATAGTATGGAA+TGG + chr1_4:33375888-33375907 None:intergenic 25.0%
! ACTAGAAGTAGAAAATAGTA+TGG + chr1_4:33375893-33375912 None:intergenic 25.0%
! TTACTCCCTTAAAATTACAA+AGG - chr1_4:33375952-33375971 Msa0160580:intron 25.0%
! TGTAATTCAAACCCAAAATA+TGG - chr1_4:33376140-33376159 Msa0160580:intron 25.0%
!! AATAAAAACAAATTCTGAGG+TGG + chr1_4:33376403-33376422 None:intergenic 25.0%
! AGATATCCAACAAAAATATG+GGG + chr1_4:33376500-33376519 None:intergenic 25.0%
! ATGTATTTCTTTGCATTTGA+AGG - chr1_4:33376682-33376701 Msa0160580:intron 25.0%
! TTATAGTGCATGATTACTTA+GGG + chr1_4:33377160-33377179 None:intergenic 25.0%
! TTTATAGTGCATGATTACTT+AGG + chr1_4:33377161-33377180 None:intergenic 25.0%
! AAAATGAGTGAGACTTATTT+GGG + chr1_4:33377714-33377733 None:intergenic 25.0%
! AAAAATGAGTGAGACTTATT+TGG + chr1_4:33377715-33377734 None:intergenic 25.0%
! TTTGTAGGTTATTGTAATGT+TGG - chr1_4:33377763-33377782 Msa0160580:CDS 25.0%
! ACAAGATCTTTATCACTAAA+AGG + chr1_4:33377890-33377909 None:intergenic 25.0%
! ATATAAACATGAGGGAAAAA+TGG + chr1_4:33377922-33377941 None:intergenic 25.0%
!!! AAAGTAGCAAAAACTAGTTT+TGG + chr1_4:33378716-33378735 None:intergenic 25.0%
!!! TAGTTTTTGCTACTTTTTAG+TGG - chr1_4:33378720-33378739 Msa0160580:CDS 25.0%
!!! AGTTTTTGCTACTTTTTAGT+GGG - chr1_4:33378721-33378740 Msa0160580:CDS 25.0%
AATGGTGTAGATAAGTTTGA+TGG + chr1_4:33374910-33374929 None:intergenic 30.0%
ATCAAACTTATCTACACCAT+TGG - chr1_4:33374909-33374928 Msa0160580:CDS 30.0%
TCAAACTTATCTACACCATT+GGG - chr1_4:33374910-33374929 Msa0160580:CDS 30.0%
AGTATCTTATAACAACCCAA+TGG + chr1_4:33374928-33374947 None:intergenic 30.0%
!!! CTATTTGGTGTCACATTTTT+AGG + chr1_4:33374956-33374975 None:intergenic 30.0%
! ATAATACCTGATTGGCTATT+TGG + chr1_4:33374971-33374990 None:intergenic 30.0%
!!! GATGTTTTAGGACAATACTA+TGG - chr1_4:33375022-33375041 Msa0160580:CDS 30.0%
TACCAACTTCTATACCATAA+GGG + chr1_4:33375090-33375109 None:intergenic 30.0%
TTACCAACTTCTATACCATA+AGG + chr1_4:33375091-33375110 None:intergenic 30.0%
! GCTTTGAGTCCAAATTATAA+AGG - chr1_4:33375253-33375272 Msa0160580:intron 30.0%
TTGAGTCCAAATTATAAAGG+GGG - chr1_4:33375256-33375275 Msa0160580:intron 30.0%
! AAGATGAGGAAAGGATTTTT+AGG - chr1_4:33375310-33375329 Msa0160580:intron 30.0%
! ATTTGAAATACACTGTTACG+TGG - chr1_4:33375350-33375369 Msa0160580:intron 30.0%
CAATTGGGATGTTAACTTTA+TGG - chr1_4:33375375-33375394 Msa0160580:intron 30.0%
AAAAGTAATGTGAGTGATAG+CGG - chr1_4:33375723-33375742 Msa0160580:intron 30.0%
GTTCATAGTGCATATATACA+TGG - chr1_4:33375916-33375935 Msa0160580:intron 30.0%
TCAAACCCAAAATATGGAAA+TGG - chr1_4:33376146-33376165 Msa0160580:intron 30.0%
! CCTTTCCATTTCCATATTTT+GGG + chr1_4:33376154-33376173 None:intergenic 30.0%
! TCCTTTCCATTTCCATATTT+TGG + chr1_4:33376155-33376174 None:intergenic 30.0%
AATGAGAAAGGATATGTTGT+AGG - chr1_4:33376182-33376201 Msa0160580:intron 30.0%
!!! AATGGGGCTTTTTTATTTCT+TGG - chr1_4:33376307-33376326 Msa0160580:CDS 30.0%
!! AGTATACCCCATATTTTTGT+TGG - chr1_4:33376491-33376510 Msa0160580:CDS 30.0%
TTATAGATGTTTGGTACTTC+TGG - chr1_4:33376596-33376615 Msa0160580:intron 30.0%
TATAGATGTTTGGTACTTCT+GGG - chr1_4:33376597-33376616 Msa0160580:intron 30.0%
GCAAAATAGAAGTTCATTAG+AGG - chr1_4:33376704-33376723 Msa0160580:intron 30.0%
TTCATTAGAGGAATTGTCAA+TGG - chr1_4:33376716-33376735 Msa0160580:intron 30.0%
CTTATGGAGTTGAATGATTT+AGG + chr1_4:33376792-33376811 None:intergenic 30.0%
!! CTTGTTTTCCAAGTTGTTTT+TGG - chr1_4:33377106-33377125 Msa0160580:intron 30.0%
! ATTTTCCACCAAAAACAACT+TGG + chr1_4:33377117-33377136 None:intergenic 30.0%
TATAGTGCATGATTACTTAG+GGG + chr1_4:33377159-33377178 None:intergenic 30.0%
! ATGAATAAAAGAGTGTGCAA+TGG + chr1_4:33377190-33377209 None:intergenic 30.0%
CAACTAAACCTCTTTGATTA+TGG - chr1_4:33377338-33377357 Msa0160580:CDS 30.0%
!! GATGAAGCCATTTTATTTGT+TGG - chr1_4:33377367-33377386 Msa0160580:CDS 30.0%
! ATTTAGAGTTTCGACAACAA+AGG + chr1_4:33377434-33377453 None:intergenic 30.0%
AATTAACAGATCAAGCGAAT+GGG + chr1_4:33377666-33377685 None:intergenic 30.0%
TAATTAACAGATCAAGCGAA+TGG + chr1_4:33377667-33377686 None:intergenic 30.0%
AAATGAGTGAGACTTATTTG+GGG + chr1_4:33377713-33377732 None:intergenic 30.0%
GTAATAGGTGAAATGTCTAA+GGG + chr1_4:33377991-33378010 None:intergenic 30.0%
TAACAAGATGACTATAACGT+CGG + chr1_4:33378080-33378099 None:intergenic 30.0%
! TTTTGCCATACAAACATCAT+CGG + chr1_4:33378103-33378122 None:intergenic 30.0%
GAACAATTGCTTATGATTTC+AGG - chr1_4:33378267-33378286 Msa0160580:CDS 30.0%
ACCCTAAAATTGCTATGTTT+CGG + chr1_4:33378338-33378357 None:intergenic 30.0%
!! ATCTGTTTTTCCGTTCTTTT+GGG + chr1_4:33378531-33378550 None:intergenic 30.0%
!! TATCTGTTTTTCCGTTCTTT+TGG + chr1_4:33378532-33378551 None:intergenic 30.0%
!!! GTTTTTGCTACTTTTTAGTG+GGG - chr1_4:33378722-33378741 Msa0160580:CDS 30.0%
ATGAGGAATGTGGTATTTAT+AGG + chr1_4:33378788-33378807 None:intergenic 30.0%
TGAATGAAAAGTTGTGAATG+AGG + chr1_4:33378805-33378824 None:intergenic 30.0%
TGATGATTGTATCTCAGCAA+TGG - chr1_4:33374645-33374664 Msa0160580:CDS 35.0%
! CCTGGATTTAGTTCAATCTT+GGG + chr1_4:33374779-33374798 None:intergenic 35.0%
! TCCTGGATTTAGTTCAATCT+TGG + chr1_4:33374780-33374799 None:intergenic 35.0%
TATGATGTTGAGTTTCCAAG+AGG - chr1_4:33374821-33374840 Msa0160580:intron 35.0%
TTGAGTGAAATATGACCTCT+TGG + chr1_4:33374839-33374858 None:intergenic 35.0%
TGTAGATAAGTTTGATGGAG+AGG + chr1_4:33374905-33374924 None:intergenic 35.0%
!!! TTGGTGTCACATTTTTAGGT+TGG + chr1_4:33374952-33374971 None:intergenic 35.0%
! TTTTGCCAAGAGGATGTTTT+AGG - chr1_4:33375010-33375029 Msa0160580:CDS 35.0%
ATTGTCCTAAAACATCCTCT+TGG + chr1_4:33375018-33375037 None:intergenic 35.0%
TTAGGACAATACTATGGTCT+TGG - chr1_4:33375028-33375047 Msa0160580:CDS 35.0%
! ACAATACTATGGTCTTGGAT+CGG - chr1_4:33375033-33375052 Msa0160580:CDS 35.0%
ACATATATTCCAGACCCTTA+TGG - chr1_4:33375073-33375092 Msa0160580:CDS 35.0%
AATCCTGCTGAAATTCCAAA+AGG - chr1_4:33375109-33375128 Msa0160580:CDS 35.0%
ATCCTGCTGAAATTCCAAAA+GGG - chr1_4:33375110-33375129 Msa0160580:CDS 35.0%
! TGAAATTCCAAAAGGGTATG+TGG - chr1_4:33375117-33375136 Msa0160580:CDS 35.0%
ATGTTCATGCAATTGATACG+AGG - chr1_4:33375155-33375174 Msa0160580:CDS 35.0%
TGTTCATGCAATTGATACGA+GGG - chr1_4:33375156-33375175 Msa0160580:CDS 35.0%
TGCAAACCCCCTTTATAATT+TGG + chr1_4:33375265-33375284 None:intergenic 35.0%
!! ATCTTGCACTTGCTATTATC+AGG + chr1_4:33375295-33375314 None:intergenic 35.0%
ATAATAGCAAGTGCAAGATG+AGG - chr1_4:33375296-33375315 Msa0160580:intron 35.0%
!! GACTGATACTTTGAAGCTAT+CGG - chr1_4:33375426-33375445 Msa0160580:intron 35.0%
AAGCTATCGGATAAGTCTAA+AGG - chr1_4:33375439-33375458 Msa0160580:intron 35.0%
! CATAACCTCCATTTTGCATT+GGG + chr1_4:33375776-33375795 None:intergenic 35.0%
! ACATAACCTCCATTTTGCAT+TGG + chr1_4:33375777-33375796 None:intergenic 35.0%
AATGGAGGTTATGTCATCTA+TGG - chr1_4:33375783-33375802 Msa0160580:intron 35.0%
GCAATTGGATCAACTCTATA+TGG - chr1_4:33375828-33375847 Msa0160580:intron 35.0%
!!! ATTTTGGTGGTGTGAATGTT+AGG - chr1_4:33376103-33376122 Msa0160580:intron 35.0%
CCCAAAATATGGAAATGGAA+AGG - chr1_4:33376151-33376170 Msa0160580:intron 35.0%
TTAAGTATCTTGATAGAGCC+TGG + chr1_4:33376230-33376249 None:intergenic 35.0%
GGCTCTATCAAGATACTTAA+TGG - chr1_4:33376230-33376249 Msa0160580:intron 35.0%
TGGTGAAACTTTAACTCTAG+AGG - chr1_4:33376250-33376269 Msa0160580:intron 35.0%
GATAGGAATGTTAGACATGA+TGG + chr1_4:33376352-33376371 None:intergenic 35.0%
!! ATTAAAATATGGTGCTGCAG+TGG - chr1_4:33376463-33376482 Msa0160580:CDS 35.0%
CAAAACAATACATCACGTGA+AGG - chr1_4:33376850-33376869 Msa0160580:intron 35.0%
AATACATCACGTGAAGGATT+GGG - chr1_4:33376856-33376875 Msa0160580:intron 35.0%
AGTTACAATGCATTGCAAGA+CGG - chr1_4:33376951-33376970 Msa0160580:intron 35.0%
ACGGAAGAATGCTTGAAAAA+GGG - chr1_4:33376970-33376989 Msa0160580:intron 35.0%
GAAAACTATAGAATTCGTGC+AGG - chr1_4:33376995-33377014 Msa0160580:intron 35.0%
!!! GTTTTCCAAGTTGTTTTTGG+TGG - chr1_4:33377109-33377128 Msa0160580:intron 35.0%
GGGGTTAATGGAATGAAAAT+AGG + chr1_4:33377140-33377159 None:intergenic 35.0%
CATGATTACTTAGGGGTTAA+TGG + chr1_4:33377152-33377171 None:intergenic 35.0%
AAGCTAGCAGTATAATGCAA+AGG - chr1_4:33377215-33377234 Msa0160580:intron 35.0%
CAAAGAGGTTTAGTTGATCA+TGG + chr1_4:33377334-33377353 None:intergenic 35.0%
CAAATAAAATGGCTTCATCG+TGG + chr1_4:33377366-33377385 None:intergenic 35.0%
! ACAACTTTTGCTTCTACACA+AGG - chr1_4:33377572-33377591 Msa0160580:intron 35.0%
! CAACTTTTGCTTCTACACAA+GGG - chr1_4:33377573-33377592 Msa0160580:intron 35.0%
CCTACAAATTCACACACAAA+AGG + chr1_4:33377751-33377770 None:intergenic 35.0%
! CCTTTTGTGTGTGAATTTGT+AGG - chr1_4:33377748-33377767 Msa0160580:CDS 35.0%
ATCTGACATTCTCGTAACTT+GGG + chr1_4:33377856-33377875 None:intergenic 35.0%
CGTAATAGGTGAAATGTCTA+AGG + chr1_4:33377992-33378011 None:intergenic 35.0%
AGACATTTCACCTATTACGT+AGG - chr1_4:33377993-33378012 Msa0160580:intron 35.0%
ATTTCACCTATTACGTAGGA+GGG - chr1_4:33377997-33378016 Msa0160580:intron 35.0%
TGTTACCGATGATGTTTGTA+TGG - chr1_4:33378095-33378114 Msa0160580:CDS 35.0%
! TCCCGAAACATAGCAATTTT+AGG - chr1_4:33378333-33378352 Msa0160580:CDS 35.0%
CCCTAAAATTGCTATGTTTC+GGG + chr1_4:33378337-33378356 None:intergenic 35.0%
! CCCGAAACATAGCAATTTTA+GGG - chr1_4:33378334-33378353 Msa0160580:CDS 35.0%
CACGAAGAAATCAAGCAAAT+CGG - chr1_4:33378373-33378392 Msa0160580:CDS 35.0%
AAAGTTGTGAATGAGGAATG+TGG + chr1_4:33378798-33378817 None:intergenic 35.0%
CTAGCACTAGTGTTCTTGTT+AGG - chr1_4:33374686-33374705 Msa0160580:CDS 40.0%
CATTCTCATTAGCTGCTACT+AGG - chr1_4:33374714-33374733 Msa0160580:CDS 40.0%
CCCAAGATTGAACTAAATCC+AGG - chr1_4:33374776-33374795 Msa0160580:intron 40.0%
! AAATGATGGCTTTTGCCAAG+AGG - chr1_4:33375000-33375019 Msa0160580:CDS 40.0%
ACTTCTATACCATAAGGGTC+TGG + chr1_4:33375085-33375104 None:intergenic 40.0%
GACCCTTATGGTATAGAAGT+TGG - chr1_4:33375085-33375104 Msa0160580:CDS 40.0%
!!! TACCCTTTTGGAATTTCAGC+AGG + chr1_4:33375115-33375134 None:intergenic 40.0%
! CATTTCTCCACATACCCTTT+TGG + chr1_4:33375127-33375146 None:intergenic 40.0%
! CAAAAGGGTATGTGGAGAAA+TGG - chr1_4:33375125-33375144 Msa0160580:CDS 40.0%
GTTCATGCAATTGATACGAG+GGG - chr1_4:33375157-33375176 Msa0160580:CDS 40.0%
ACACTGTTACGTGGATCAAT+TGG - chr1_4:33375359-33375378 Msa0160580:intron 40.0%
CACTGTTACGTGGATCAATT+GGG - chr1_4:33375360-33375379 Msa0160580:intron 40.0%
GGATGTTAACTTTATGGTGC+CGG - chr1_4:33375381-33375400 Msa0160580:intron 40.0%
GAGTATCAAGCATGATTGCA+AGG - chr1_4:33375465-33375484 Msa0160580:CDS 40.0%
!! CTCACATTACTTTTGCTGCA+TGG + chr1_4:33375717-33375736 None:intergenic 40.0%
GGTTATGTCATCTATGGAGT+TGG - chr1_4:33375789-33375808 Msa0160580:intron 40.0%
CATCTACATACAGGTGCAAT+TGG - chr1_4:33375813-33375832 Msa0160580:intron 40.0%
TGGATCAACTCTATATGGAC+AGG - chr1_4:33375833-33375852 Msa0160580:intron 40.0%
TATGGAAATGGAAAGGAAGC+AGG - chr1_4:33376158-33376177 Msa0160580:intron 40.0%
AAGGAAGCAGGAAATGAGAA+AGG - chr1_4:33376170-33376189 Msa0160580:intron 40.0%
!! AGAAGACACTCTGGAGTAAT+GGG - chr1_4:33376290-33376309 Msa0160580:CDS 40.0%
!!! GGGGCTTTTTTATTTCTTGG+TGG - chr1_4:33376310-33376329 Msa0160580:CDS 40.0%
! GAATGTTAGACATGATGGTG+TGG + chr1_4:33376347-33376366 None:intergenic 40.0%
GAGGAATTGTCAATGGTTTG+AGG - chr1_4:33376723-33376742 Msa0160580:intron 40.0%
CAATACATCACGTGAAGGAT+TGG - chr1_4:33376855-33376874 Msa0160580:intron 40.0%
GACGGAAGAATGCTTGAAAA+AGG - chr1_4:33376969-33376988 Msa0160580:intron 40.0%
CTATAGAATTCGTGCAGGAA+AGG - chr1_4:33377000-33377019 Msa0160580:intron 40.0%
TCGTGGAACCATAATCAAAG+AGG + chr1_4:33377349-33377368 None:intergenic 40.0%
!! TGTTCAAGTGGATTGAGTAG+AGG + chr1_4:33377487-33377506 None:intergenic 40.0%
GTAAAATCTAGCACTGTGAG+TGG + chr1_4:33377517-33377536 None:intergenic 40.0%
! CAGTGCTAGATTTTACGTGA+TGG - chr1_4:33377521-33377540 Msa0160580:intron 40.0%
! TGCTAGATTTTACGTGATGG+AGG - chr1_4:33377524-33377543 Msa0160580:intron 40.0%
ATGGAGGCTTAGAGATAGAA+TGG - chr1_4:33377540-33377559 Msa0160580:intron 40.0%
! CTCACCAAGTCTTGTGTTAT+TGG - chr1_4:33377621-33377640 Msa0160580:intron 40.0%
ACGTCCAATAACACAAGACT+TGG + chr1_4:33377628-33377647 None:intergenic 40.0%
!! GATCAAGCGAATGGGTTATT+GGG + chr1_4:33377658-33377677 None:intergenic 40.0%
!! AGATCAAGCGAATGGGTTAT+TGG + chr1_4:33377659-33377678 None:intergenic 40.0%
CATCTGACATTCTCGTAACT+TGG + chr1_4:33377857-33377876 None:intergenic 40.0%
CATTTCACCTATTACGTAGG+AGG - chr1_4:33377996-33378015 Msa0160580:intron 40.0%
TTTCACCTATTACGTAGGAG+GGG - chr1_4:33377998-33378017 Msa0160580:intron 40.0%
! ATTTTCCCCTCCTACGTAAT+AGG + chr1_4:33378006-33378025 None:intergenic 40.0%
! ATGACTATAACGTCGGTTGA+TGG + chr1_4:33378073-33378092 None:intergenic 40.0%
AGAATTTACCAGCAGAACAG+AGG - chr1_4:33378237-33378256 Msa0160580:CDS 40.0%
! GAGTGAGAAATTTTGTTCCC+AGG - chr1_4:33378476-33378495 Msa0160580:CDS 40.0%
GCTTCCATACAAGATGTCTT+GGG + chr1_4:33378503-33378522 None:intergenic 40.0%
TGCTTCCATACAAGATGTCT+TGG + chr1_4:33378504-33378523 None:intergenic 40.0%
GAAGCAAACACCCAAAAGAA+CGG - chr1_4:33378518-33378537 Msa0160580:CDS 40.0%
GTGTGCATAAAATGCATGCT+CGG + chr1_4:33378643-33378662 None:intergenic 40.0%
! CATGCATTTTATGCACACTC+AGG - chr1_4:33378645-33378664 Msa0160580:CDS 40.0%
! TCATAACGAAGCGTTTCAAG+AGG - chr1_4:33378822-33378841 Msa0160580:CDS 40.0%
!! CTGAGCTAGTTGATGATGCA+GGG - chr1_4:33374870-33374889 Msa0160580:CDS 45.0%
GTGACACCAAATAGCCAATC+AGG - chr1_4:33374962-33374981 Msa0160580:CDS 45.0%
AGCAAGTGCAAGATGAGGAA+AGG - chr1_4:33375301-33375320 Msa0160580:intron 45.0%
AGCTTCCCAATGCAAAATGG+AGG - chr1_4:33375768-33375787 Msa0160580:intron 45.0%
! GGAGTTGGTCATCTACATAC+AGG - chr1_4:33375804-33375823 Msa0160580:intron 45.0%
! TGGTGGTGTGAATGTTAGGA+TGG - chr1_4:33376107-33376126 Msa0160580:intron 45.0%
GGTGGTGTGAATGTTAGGAT+GGG - chr1_4:33376108-33376127 Msa0160580:intron 45.0%
GTGTGAATGTTAGGATGGGA+AGG - chr1_4:33376112-33376131 Msa0160580:intron 45.0%
!! TCCACTTGTTATCCTCAACC+AGG - chr1_4:33376209-33376228 Msa0160580:intron 45.0%
ATCTTGATAGAGCCTGGTTG+AGG + chr1_4:33376224-33376243 None:intergenic 45.0%
!! CAGAAGACACTCTGGAGTAA+TGG - chr1_4:33376289-33376308 Msa0160580:CDS 45.0%
!! GAAGACACTCTGGAGTAATG+GGG - chr1_4:33376291-33376310 Msa0160580:CDS 45.0%
GACAAGCATCAGAAGCTTCA+AGG - chr1_4:33377237-33377256 Msa0160580:intron 45.0%
CATCAGAAGCTTCAAGGAAG+AGG - chr1_4:33377243-33377262 Msa0160580:intron 45.0%
ATCCTCCTCTTGTTCTCTCT+AGG - chr1_4:33377272-33377291 Msa0160580:intron 45.0%
TCCTCCTCTTGTTCTCTCTA+GGG - chr1_4:33377273-33377292 Msa0160580:intron 45.0%
CATACCCTAGAGAGAACAAG+AGG + chr1_4:33377280-33377299 None:intergenic 45.0%
AGTGGAGGTGATTGTTCAAG+TGG + chr1_4:33377499-33377518 None:intergenic 45.0%
AAATCTAGCACTGTGAGTGG+AGG + chr1_4:33377514-33377533 None:intergenic 45.0%
GAGGCTTAGAGATAGAATGG+TGG - chr1_4:33377543-33377562 Msa0160580:intron 45.0%
!! AAGACTTGGTGAGCACACAA+TGG + chr1_4:33377614-33377633 None:intergenic 45.0%
! TTTGGGGTGCGTTTAGTAAG+TGG + chr1_4:33377697-33377716 None:intergenic 45.0%
AGGAGGGGAAAATTCCATCT+AGG - chr1_4:33378013-33378032 Msa0160580:intron 45.0%
AGTACCTGACACCTACATCT+AGG - chr1_4:33378125-33378144 Msa0160580:CDS 45.0%
GTACCTGACACCTACATCTA+GGG - chr1_4:33378126-33378145 Msa0160580:CDS 45.0%
! CTAGGGTACACAGTGGTTTT+AGG - chr1_4:33378143-33378162 Msa0160580:CDS 45.0%
!!! CACAGTGGTTTTAGGTCGAA+TGG - chr1_4:33378151-33378170 Msa0160580:CDS 45.0%
!!! AGTGGTTTTAGGTCGAATGG+TGG - chr1_4:33378154-33378173 Msa0160580:CDS 45.0%
TGGTGGAATACACTGATGAC+AGG - chr1_4:33378171-33378190 Msa0160580:CDS 45.0%
CTAATACTCCTCTGTTCTGC+TGG + chr1_4:33378248-33378267 None:intergenic 45.0%
TCACTCTGTAACGTCTTCTG+AGG + chr1_4:33378462-33378481 None:intergenic 45.0%
TACAAGATGTCTTGGGACCT+GGG + chr1_4:33378496-33378515 None:intergenic 45.0%
ATACAAGATGTCTTGGGACC+TGG + chr1_4:33378497-33378516 None:intergenic 45.0%
AGGTCCCAAGACATCTTGTA+TGG - chr1_4:33378496-33378515 Msa0160580:CDS 45.0%
TATGCATTGGAACGCACTCA+CGG - chr1_4:33378554-33378573 Msa0160580:CDS 45.0%
! AGTGGGGAAAAACCCGATTT+TGG - chr1_4:33378738-33378757 Msa0160580:CDS 45.0%
! GTGGGGAAAAACCCGATTTT+GGG - chr1_4:33378739-33378758 Msa0160580:CDS 45.0%
AAGAGTTTCCACCTGAAGTC+GGG + chr1_4:33378765-33378784 None:intergenic 45.0%
GAAGAGTTTCCACCTGAAGT+CGG + chr1_4:33378766-33378785 None:intergenic 45.0%
! AACGAAGCGTTTCAAGAGGA+TGG - chr1_4:33378826-33378845 Msa0160580:CDS 45.0%
GCAAGCATTACGAGCTTCTA+GGG - chr1_4:33378848-33378867 Msa0160580:CDS 45.0%
AGAGAAACTTGGAGTGAGGA+GGG + chr1_4:33378885-33378904 None:intergenic 45.0%
TAGAGAAACTTGGAGTGAGG+AGG + chr1_4:33378886-33378905 None:intergenic 45.0%
!! TTGAAAAAATAATTAAAATA+TGG - chr1_4:33376452-33376471 Msa0160580:intron 5.0%
!! GCTGAGCTAGTTGATGATGC+AGG - chr1_4:33374869-33374888 Msa0160580:CDS 50.0%
TGCAATTGATACGAGGGGTG+TGG - chr1_4:33375162-33375181 Msa0160580:CDS 50.0%
! ATACGAGGGGTGTGGATGAT+CGG - chr1_4:33375170-33375189 Msa0160580:CDS 50.0%
GCGAGCTTCCCAATGCAAAA+TGG - chr1_4:33375765-33375784 Msa0160580:intron 50.0%
GCCTGGTTGAGGATAACAAG+TGG + chr1_4:33376213-33376232 None:intergenic 50.0%
AACAGCAGCAGAAGACACTC+TGG - chr1_4:33376281-33376300 Msa0160580:CDS 50.0%
!! CTTCTGGGAGTACTCTTGCA+AGG - chr1_4:33376612-33376631 Msa0160580:intron 50.0%
ATGGAATGGTCTCATGCGCA+GGG + chr1_4:33377038-33377057 None:intergenic 50.0%
ACCCTAGAGAGAACAAGAGG+AGG + chr1_4:33377277-33377296 None:intergenic 50.0%
GGAAGAGTGGTGCTTGTGAT+CGG + chr1_4:33377457-33377476 None:intergenic 50.0%
GATCACAAGCACCACTCTTC+CGG - chr1_4:33377456-33377475 Msa0160580:intron 50.0%
!! GGATTGAGTAGAGGCACTAC+CGG + chr1_4:33377478-33377497 None:intergenic 50.0%
TACTCGACGAATCATGCCGA+GGG + chr1_4:33378049-33378068 None:intergenic 50.0%
ATACTCGACGAATCATGCCG+AGG + chr1_4:33378050-33378069 None:intergenic 50.0%
GTACCCTAGATGTAGGTGTC+AGG + chr1_4:33378132-33378151 None:intergenic 50.0%
CCACTGTGTACCCTAGATGT+AGG + chr1_4:33378139-33378158 None:intergenic 50.0%
! CCTACATCTAGGGTACACAG+TGG - chr1_4:33378136-33378155 Msa0160580:CDS 50.0%
CAAGCATTCAACCATGCTCG+AGG + chr1_4:33378693-33378712 None:intergenic 50.0%
GGCAAGCATTACGAGCTTCT+AGG - chr1_4:33378847-33378866 Msa0160580:CDS 50.0%
! GCATTACGAGCTTCTAGGGA+AGG - chr1_4:33378852-33378871 Msa0160580:CDS 50.0%
! TACGAGGGGTGTGGATGATC+GGG - chr1_4:33375171-33375190 Msa0160580:CDS 55.0%
!! GGGAGTACTCTTGCAAGGCA+CGG - chr1_4:33376617-33376636 Msa0160580:intron 55.0%
! GGAGTACTCTTGCAAGGCAC+GGG - chr1_4:33376618-33376637 Msa0160580:intron 55.0%
TTGCAAGGCACGGGTGATGA+TGG - chr1_4:33376627-33376646 Msa0160580:intron 55.0%
TGGAATGGTCTCATGCGCAG+GGG + chr1_4:33377037-33377056 None:intergenic 55.0%
CATGGAATGGTCTCATGCGC+AGG + chr1_4:33377039-33377058 None:intergenic 55.0%
GCTCATGAGGCAGCATGGAA+TGG + chr1_4:33377052-33377071 None:intergenic 55.0%
ATGAGCCCCGCACATGAACA+CGG - chr1_4:33377066-33377085 Msa0160580:intron 55.0%
TCCTTCCCGTGTTCATGTGC+GGG + chr1_4:33377075-33377094 None:intergenic 55.0%
CTCCTTCCCGTGTTCATGTG+CGG + chr1_4:33377076-33377095 None:intergenic 55.0%
!! TAGAGGCACTACCGGAAGAG+TGG + chr1_4:33377470-33377489 None:intergenic 55.0%
AGGGACACAGGTGTCCTAGA+TGG + chr1_4:33378030-33378049 None:intergenic 55.0%
! TCTAGGACACCTGTGTCCCT+CGG - chr1_4:33378030-33378049 Msa0160580:intron 55.0%
GGGCACATAGACCATGCTCA+GGG + chr1_4:33378582-33378601 None:intergenic 55.0%
CATCCTATGTGCCTCGAGCA+TGG - chr1_4:33378679-33378698 Msa0160580:CDS 55.0%
CAACCATGCTCGAGGCACAT+AGG + chr1_4:33378685-33378704 None:intergenic 55.0%
CTGAAGTCGGGCCCAAAATC+GGG + chr1_4:33378753-33378772 None:intergenic 55.0%
CCTGAAGTCGGGCCCAAAAT+CGG + chr1_4:33378754-33378773 None:intergenic 55.0%
! ATTTTGGGCCCGACTTCAGG+TGG - chr1_4:33378754-33378773 Msa0160580:CDS 55.0%
! AGGGGTGTGGATGATCGGGT+GGG - chr1_4:33375175-33375194 Msa0160580:CDS 60.0%
GTTCATGTGCGGGGCTCATG+AGG + chr1_4:33377065-33377084 None:intergenic 60.0%
TGAGCCCCGCACATGAACAC+GGG - chr1_4:33377067-33377086 Msa0160580:intron 60.0%
CCTTCCCGTGTTCATGTGCG+GGG + chr1_4:33377074-33377093 None:intergenic 60.0%
CGCACATGAACACGGGAAGG+AGG - chr1_4:33377074-33377093 Msa0160580:intron 60.0%
CGAATCATGCCGAGGGACAC+AGG + chr1_4:33378042-33378061 None:intergenic 60.0%
GGGGCACATAGACCATGCTC+AGG + chr1_4:33378583-33378602 None:intergenic 60.0%
TGGTCTATGTGCCCCGAGCA+TGG - chr1_4:33378588-33378607 Msa0160580:CDS 60.0%
! CCGATTTTGGGCCCGACTTC+AGG - chr1_4:33378751-33378770 Msa0160580:CDS 60.0%
! GAGGGGTGTGGATGATCGGG+TGG - chr1_4:33375174-33375193 Msa0160580:CDS 65.0%
CCCCGCACATGAACACGGGA+AGG - chr1_4:33377071-33377090 Msa0160580:intron 65.0%
CACTCACGGCTCCCTGAGCA+TGG - chr1_4:33378568-33378587 Msa0160580:CDS 65.0%
TCGGGGCGCATAGCCATGCT+CGG + chr1_4:33378604-33378623 None:intergenic 65.0%
ATGGCTATGCGCCCCGAGCA+TGG - chr1_4:33378607-33378626 Msa0160580:CDS 65.0%
TATGCGCCCCGAGCATGGCA+TGG - chr1_4:33378612-33378631 Msa0160580:CDS 65.0%
ATGCGCCCCGAGCATGGCAT+GGG - chr1_4:33378613-33378632 Msa0160580:CDS 65.0%
GAGTGCCCATGCCATGCTCG+GGG + chr1_4:33378621-33378640 None:intergenic 65.0%
! GGAGTGCCCATGCCATGCTC+GGG + chr1_4:33378622-33378641 None:intergenic 65.0%
! CGGAGTGCCCATGCCATGCT+CGG + chr1_4:33378623-33378642 None:intergenic 65.0%
GCGGGGCTCATGAGGCAGCA+TGG + chr1_4:33377057-33377076 None:intergenic 70.0%
GGGGCGCATAGCCATGCTCG+GGG + chr1_4:33378602-33378621 None:intergenic 70.0%
CGGGGCGCATAGCCATGCTC+GGG + chr1_4:33378603-33378622 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 33374644 33378906 33374644 ID=Msa0160580;Name=Msa0160580
chr1_4 mRNA 33374644 33378906 33374644 ID=Msa0160580-mRNA-1;Parent=Msa0160580;Name=Msa0160580-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.22|1|1|9|0|639
chr1_4 exon 33378064 33378906 33378064 ID=Msa0160580-mRNA-1:exon:10436;Parent=Msa0160580-mRNA-1
chr1_4 exon 33377696 33377854 33377696 ID=Msa0160580-mRNA-1:exon:10435;Parent=Msa0160580-mRNA-1
chr1_4 exon 33377279 33377425 33377279 ID=Msa0160580-mRNA-1:exon:10434;Parent=Msa0160580-mRNA-1
chr1_4 exon 33376911 33376948 33376911 ID=Msa0160580-mRNA-1:exon:10433;Parent=Msa0160580-mRNA-1
chr1_4 exon 33376455 33376533 33376455 ID=Msa0160580-mRNA-1:exon:10432;Parent=Msa0160580-mRNA-1
chr1_4 exon 33376256 33376336 33376256 ID=Msa0160580-mRNA-1:exon:10431;Parent=Msa0160580-mRNA-1
chr1_4 exon 33375443 33375535 33375443 ID=Msa0160580-mRNA-1:exon:10430;Parent=Msa0160580-mRNA-1
chr1_4 exon 33374850 33375195 33374850 ID=Msa0160580-mRNA-1:exon:10429;Parent=Msa0160580-mRNA-1
chr1_4 exon 33374644 33374777 33374644 ID=Msa0160580-mRNA-1:exon:10428;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33378064 33378906 33378064 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33377696 33377854 33377696 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33377279 33377425 33377279 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33376911 33376948 33376911 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33376455 33376533 33376455 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33376256 33376336 33376256 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33375443 33375535 33375443 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33374850 33375195 33374850 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
chr1_4 CDS 33374644 33374777 33374644 ID=Msa0160580-mRNA-1:cds;Parent=Msa0160580-mRNA-1
Gene Sequence

>Msa0160580

ATGATGATTGTATCTCAGCAATGGATGCTCTCACTTGAAATACTAGCACTAGTGTTCTTGTTAGGCACAACATTCTCATTAGCTGCTACTAGGAAGACTAATAAAAATATTAAAACAAATATTTTTATGTCTCCCAAGATTGAACTAAATCCAGGATTTGTTTCAAATAAAGTATATTATGATGTTGAGTTTCCAAGAGGTCATATTTCACTCAAGAGTTTCAATGCTGAGCTAGTTGATGATGCAGGGAATTCTATACCTCTCCATCAAACTTATCTACACCATTGGGTTGTTATAAGATACTACCAACCTAAAAATGTGACACCAAATAGCCAATCAGGTATTATTTTCTTAAGAAATGATGGCTTTTGCCAAGAGGATGTTTTAGGACAATACTATGGTCTTGGATCGGAAACAAGACGCACAAATACATATATTCCAGACCCTTATGGTATAGAAGTTGGTAATCCTGCTGAAATTCCAAAAGGGTATGTGGAGAAATGGTTGATCAATGTTCATGCAATTGATACGAGGGGTGTGGATGATCGGGTGGGATGCATTGAGTGCTCATGTGACCTATACAATGTAACAAAAGATGAAAATGGTGATGCTTTGAGTCCAAATTATAAAGGGGGTTTGCAATGTTGTCCTGATAATAGCAAGTGCAAGATGAGGAAAGGATTTTTAGGCCCAAAAAAAACCATCTATTTGAAATACACTGTTACGTGGATCAATTGGGATGTTAACTTTATGGTGCCGGTCAACGTTTATATATTTGATGTGACTGATACTTTGAAGCTATCGGATAAGTCTAAAGGAATGAGTATCAAGCATGATTGCAAGGTAGAATATGAAGTTGAACCATGCAGCAAAAGTAATGTGAGTGATAGCGGTTGTGTTGATATGAAGAGTGCGAGCTTCCCAATGCAAAATGGAGGTTATGTCATCTATGGAGTTGGTCATCTACATACAGGTGCAATTGGATCAACTCTATATGGACAGGATGGGAAGGTAATATGTAATTCAAACCCAAAATATGGAAATGGAAAGGAAGCAGGAAATGAGAAAGGATATGTTGTAGGAATGTCCACTTGTTATCCTCAACCAGGCTCTATCAAGATACTTAATGGTGAAACTTTAACTCTAGAGATGTTTGGTACTTCTGGGAGTACTCTTGCAAGGCACGGGAAAGGTTCTTCATGTGCCCCTGCGCATGAGACCATTCCATGCTGCCTCATGAGCCCCGCACATGAACACGGGAAGGAGAAAGCTAGCAGTATAATGCAAAGGACAAGCATCAGAAGCTTCAAGGAAGAGGATCTCTATCCTCCTCTTGTTCTCTCTAGGGAGGGGAAAATTCCATCTAGGACACCTGTGTCCCTCGGCATGATTCGTCGAGTATCCATCAACCGACGTTATAGTCATCTTGTTACCGATGATGGTGTTTTTGATGTAATTCACGAAGAAATCAAGCAAATCGGCAAATCAAGACATTTGATGATTAGTGAACACTTTGAGAAGATTCAAAATGAAGATTCAAGTAGCCTCAGAAGACGTTACAGAGTGAGAAATTTTGTTCCCAGGTCCCAAGACATCTTGTATGGAAGCAAACACCCAAAAGAACGGAAAAACAGATATTTATGCATTGGAACGCACTCACGGCTCCCTGAGCATGGTCTATGTGCCCCGAGCATGGCTATGCGCCCCGAGCATGGCATGGGCACTCCGAGCATGCATTTTATGCACACTCAGGATCTACGAGCACATCCTATGTGCCTCGAGCATGGTGGAAACTCTTCCTATAAATACCACATTCCTCATTCACAACTTTTCATTCATAACGAAGCGTTTCAAGAGGATGGCAAGCATTACGAGCTTCTAGGGAAGGAGTTTCTCCCTCCTCACTCCAAGTTTCTCTAG

Protein sequence

>Msa0160580

MMIVSQQWMLSLEILALVFLLGTTFSLAATRKTNKNIKTNIFMSPKIELNPGFVSNKVYYDVEFPRGHISLKSFNAELVDDAGNSIPLHQTYLHHWVVIRYYQPKNVTPNSQSGIIFLRNDGFCQEDVLGQYYGLGSETRRTNTYIPDPYGIEVGNPAEIPKGYVEKWLINVHAIDTRGVDDRVGCIECSCDLYNVTKDENGDALSPNYKGGLQCCPDNSKCKMRKGFLGPKKTIYLKYTVTWINWDVNFMVPVNVYIFDVTDTLKLSDKSKGMSIKHDCKVEYEVEPCSKSNVSDSGCVDMKSASFPMQNGGYVIYGVGHLHTGAIGSTLYGQDGKVICNSNPKYGNGKEAGNEKGYVVGMSTCYPQPGSIKILNGETLTLEMFGTSGSTLARHGKGSSCAPAHETIPCCLMSPAHEHGKEKASSIMQRTSIRSFKEEDLYPPLVLSREGKIPSRTPVSLGMIRRVSINRRYSHLVTDDGVFDVIHEEIKQIGKSRHLMISEHFEKIQNEDSSSLRRRYRVRNFVPRSQDILYGSKHPKERKNRYLCIGTHSRLPEHGLCAPSMAMRPEHGMGTPSMHFMHTQDLRAHPMCLEHGGNSSYKYHIPHSQLFIHNEAFQEDGKHYELLGKEFLPPHSKFL*