Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333000 | sp|Q8RWG2|CF107_ARATH | 42.081 | 221 | 57 | 6 | 85 | 242 | 97 | 309 | 1.11e-33 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333000 | A0A396IKI2 | 80.000 | 260 | 4 | 1 | 1 | 212 | 1 | 260 | 1.37e-137 | 410 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001510 | Msa1333000 | 0.807533 | 4.826543e-50 | -8.615850e-47 |
| Msa0017420 | Msa1333000 | 0.809885 | 1.516617e-50 | -8.615850e-47 |
| Msa0022960 | Msa1333000 | 0.805404 | 1.356715e-49 | -8.615850e-47 |
| Msa0053360 | Msa1333000 | 0.824711 | 6.960374e-54 | -8.615850e-47 |
| Msa0089410 | Msa1333000 | 0.800931 | 1.143152e-48 | -8.615850e-47 |
| Msa0091340 | Msa1333000 | 0.821621 | 3.662575e-53 | -8.615850e-47 |
| Msa0098800 | Msa1333000 | 0.800146 | 1.652257e-48 | -8.615850e-47 |
| Msa0665010 | Msa1333000 | 0.807773 | 4.292055e-50 | -8.615850e-47 |
| Msa0687320 | Msa1333000 | 0.801919 | 7.175034e-49 | -8.615850e-47 |
| Msa0761930 | Msa1333000 | 0.804544 | 2.052824e-49 | -8.615850e-47 |
| Msa0805000 | Msa1333000 | 0.802378 | 5.770714e-49 | -8.615850e-47 |
| Msa0805030 | Msa1333000 | 0.804138 | 2.493802e-49 | -8.615850e-47 |
| Msa0829770 | Msa1333000 | 0.811155 | 8.063905e-51 | -8.615850e-47 |
| Msa0136520 | Msa1333000 | 0.811333 | 7.377632e-51 | -8.615850e-47 |
| Msa0138380 | Msa1333000 | 0.811086 | 8.345531e-51 | -8.615850e-47 |
| Msa0151210 | Msa1333000 | 0.819851 | 9.349543e-53 | -8.615850e-47 |
| Msa0155030 | Msa1333000 | 0.804553 | 2.044305e-49 | -8.615850e-47 |
| Msa0170690 | Msa1333000 | 0.830366 | 3.058040e-55 | -8.615850e-47 |
| Msa0183960 | Msa1333000 | 0.807107 | 5.941507e-50 | -8.615850e-47 |
| Msa0232660 | Msa1333000 | 0.809167 | 2.163505e-50 | -8.615850e-47 |
| Msa0238530 | Msa1333000 | 0.813198 | 2.889888e-51 | -8.615850e-47 |
| Msa1251960 | Msa1333000 | 0.818194 | 2.226163e-52 | -8.615850e-47 |
| Msa1277830 | Msa1333000 | 0.816934 | 4.280696e-52 | -8.615850e-47 |
| Msa1277890 | Msa1333000 | 0.839700 | 1.354515e-57 | -8.615850e-47 |
| Msa1277930 | Msa1333000 | 0.826969 | 2.025756e-54 | -8.615850e-47 |
| Msa1295220 | Msa1333000 | 0.801322 | 9.508594e-49 | -8.615850e-47 |
| Msa1316880 | Msa1333000 | 0.842439 | 2.584155e-58 | -8.615850e-47 |
| Msa1333000 | Msa1348230 | 0.805216 | 1.486028e-49 | -8.615850e-47 |
| Msa1333000 | Msa1375980 | 0.800739 | 1.251028e-48 | -8.615850e-47 |
| Msa1333000 | Msa1397550 | 0.811020 | 8.625947e-51 | -8.615850e-47 |
| Msa1333000 | Msa1418780 | 0.804448 | 2.150045e-49 | -8.615850e-47 |
| Msa0373640 | Msa1333000 | 0.805192 | 1.503275e-49 | -8.615850e-47 |
| Msa0400900 | Msa1333000 | 0.807133 | 5.867169e-50 | -8.615850e-47 |
| Msa0449220 | Msa1333000 | 0.813233 | 2.839722e-51 | -8.615850e-47 |
| Msa0481580 | Msa1333000 | 0.803207 | 3.891067e-49 | -8.615850e-47 |
| Msa1090020 | Msa1333000 | 0.800030 | 1.744833e-48 | -8.615850e-47 |
| Msa0240460 | Msa1333000 | 0.810569 | 1.079746e-50 | -8.615850e-47 |
| Msa0253510 | Msa1333000 | 0.800036 | 1.740052e-48 | -8.615850e-47 |
| Msa0298590 | Msa1333000 | 0.822974 | 1.777404e-53 | -8.615850e-47 |
| Msa0358720 | Msa1333000 | 0.800013 | 1.758931e-48 | -8.615850e-47 |
| Msa1203090 | Msa1333000 | 0.810670 | 1.027262e-50 | -8.615850e-47 |
| Msa0508770 | Msa1333000 | 0.803725 | 3.039321e-49 | -8.615850e-47 |
| Msa0515400 | Msa1333000 | 0.800863 | 1.180633e-48 | -8.615850e-47 |
| Msa0550870 | Msa1333000 | 0.805993 | 1.020484e-49 | -8.615850e-47 |
| Msa0554410 | Msa1333000 | 0.806987 | 6.299420e-50 | -8.615850e-47 |
| Msa0570250 | Msa1333000 | 0.815201 | 1.043685e-51 | -8.615850e-47 |
| Msa0978290 | Msa1333000 | 0.834055 | 3.738058e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333000 | MtrunA17_Chr4g0068341 | 80.000 | 260 | 4 | 1 | 1 | 212 | 1 | 260 | 2.64e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333000 | AT3G17040.3 | 42.081 | 221 | 57 | 6 | 85 | 242 | 97 | 309 | 1.99e-35 | 131 |
| Msa1333000 | AT3G17040.4 | 42.081 | 221 | 57 | 6 | 85 | 242 | 63 | 275 | 2.15e-35 | 130 |
| Msa1333000 | AT3G17040.1 | 42.081 | 221 | 57 | 6 | 85 | 242 | 97 | 309 | 1.13e-34 | 131 |
| Msa1333000 | AT3G17040.2 | 42.081 | 221 | 57 | 6 | 85 | 242 | 63 | 275 | 1.38e-34 | 130 |
Find 77 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGTTCTTGAAAAGAAAA+TGG | 0.199509 | 8_4:-53011523 | Msa1333000:CDS |
| GAGGGAATTGAGTTCATTTC+TGG | 0.210504 | 8_4:+53013613 | None:intergenic |
| TTGAATTTGAAGAGATAGTT+TGG | 0.245768 | 8_4:+53013538 | None:intergenic |
| TTTGGACTTGGCGTTGTATA+AGG | 0.269191 | 8_4:-53013155 | Msa1333000:CDS |
| CACAGTCAAAAGCTTATCTT+TGG | 0.274251 | 8_4:+53013180 | None:intergenic |
| CTTTCGGTGGAATGTAATTT+CGG | 0.278899 | 8_4:+53013389 | None:intergenic |
| CTATCTTCTTCCTCCACATT+TGG | 0.286315 | 8_4:-53013667 | Msa1333000:five_prime_UTR |
| TGAAGAATGGAAGGGTAAAA+TGG | 0.288692 | 8_4:+53013504 | None:intergenic |
| CCATCAAAGTTTGAGTCTTT+CGG | 0.318205 | 8_4:+53013373 | None:intergenic |
| CTCCGGTGAGGAGGTGAAAA+AGG | 0.321280 | 8_4:-53013311 | Msa1333000:CDS |
| ACTCTCCCCGGTTCAAATAT+CGG | 0.323023 | 8_4:+53013214 | None:intergenic |
| GGATGTGGAAGGGGATTTGA+TGG | 0.330876 | 8_4:-53010563 | Msa1333000:CDS |
| CCGAAAGACTCAAACTTTGA+TGG | 0.349286 | 8_4:-53013373 | Msa1333000:CDS |
| GTTGTATAAGGCTAAGGTTT+TGG | 0.365989 | 8_4:-53013143 | Msa1333000:CDS |
| TTTCGGTGGAATGTAATTTC+GGG | 0.367593 | 8_4:+53013390 | None:intergenic |
| TTGAGTTCATTTCTGGTTAA+CGG | 0.401919 | 8_4:+53013620 | None:intergenic |
| CGGGTACTCTGCTCGGAGGA+AGG | 0.421685 | 8_4:+53013409 | None:intergenic |
| TGAATTTGAAGAGATAGTTT+GGG | 0.428632 | 8_4:+53013539 | None:intergenic |
| GATGAAGAAGGTGGAGGAGA+GGG | 0.430756 | 8_4:+53013595 | None:intergenic |
| AGGTCGTAGGGATGTGGAAG+GGG | 0.431568 | 8_4:-53010572 | Msa1333000:CDS |
| ATGCACCGTGTTGCACTCTC+AGG | 0.434151 | 8_4:-53013462 | Msa1333000:CDS |
| GGAGAAGGAAATTGTGAAAG+AGG | 0.436595 | 8_4:-53013290 | Msa1333000:CDS |
| GGGTACTCTGCTCGGAGGAA+GGG | 0.445394 | 8_4:+53013410 | None:intergenic |
| GCTGTTCTTGAAAAGAAAAT+GGG | 0.446389 | 8_4:-53011522 | Msa1333000:CDS |
| TGAGTGAGAATTGTAGAACT+TGG | 0.448533 | 8_4:+53013571 | None:intergenic |
| GAAGAATGGAAGGGTAAAAT+GGG | 0.451235 | 8_4:+53013505 | None:intergenic |
| GAAAATGCCGATATTTGAAC+CGG | 0.452403 | 8_4:-53013221 | Msa1333000:CDS |
| AAGGTTCTTCAATTGATGTC+GGG | 0.462649 | 8_4:-53013261 | Msa1333000:CDS |
| TGAGGTGGGAAGATGAAGAA+TGG | 0.465047 | 8_4:+53013491 | None:intergenic |
| ATGGAACGCTGGTGGTTCGC+CGG | 0.467163 | 8_4:-53013354 | Msa1333000:CDS |
| AAAAGAAAATGGGAAATGTC+AGG | 0.470264 | 8_4:-53011512 | Msa1333000:CDS |
| AACGCTGGTGGTTCGCCGGC+CGG | 0.473320 | 8_4:-53013350 | Msa1333000:CDS |
| TTTGACTGTGAATTTGGACT+TGG | 0.475255 | 8_4:-53013167 | Msa1333000:CDS |
| ATGATGATGATGCGGATAAG+AGG | 0.475664 | 8_4:-53010534 | Msa1333000:CDS |
| GAGTCTGATTCGACTCTCCC+CGG | 0.486099 | 8_4:+53013202 | None:intergenic |
| AGATGAAGAAGGTGGAGGAG+AGG | 0.487422 | 8_4:+53013594 | None:intergenic |
| GGTACTCTGCTCGGAGGAAG+GGG | 0.489885 | 8_4:+53013411 | None:intergenic |
| CTTGGCGTTGTATAAGGCTA+AGG | 0.495715 | 8_4:-53013149 | Msa1333000:CDS |
| TAGGTCGTAGGGATGTGGAA+GGG | 0.499079 | 8_4:-53010573 | Msa1333000:CDS |
| GGAAGGGGATTTGATGGTTG+AGG | 0.499965 | 8_4:-53010557 | Msa1333000:CDS |
| CTTGGAGATGAAGAAGGTGG+AGG | 0.513126 | 8_4:+53013589 | None:intergenic |
| ATAAGAGGAAGGGATGCAAA+AGG | 0.519207 | 8_4:-53010519 | Msa1333000:CDS |
| TGATGATGCGGATAAGAGGA+AGG | 0.520548 | 8_4:-53010530 | Msa1333000:CDS |
| CAGGGACTCAACTTCAGTGT+TGG | 0.521438 | 8_4:-53013443 | Msa1333000:CDS |
| AAAGGTTCTTCAATTGATGT+CGG | 0.529046 | 8_4:-53013262 | Msa1333000:CDS |
| GTGGGAAGATGAAGAATGGA+AGG | 0.540617 | 8_4:+53013495 | None:intergenic |
| GTAATTTCGGGTACTCTGCT+CGG | 0.542036 | 8_4:+53013402 | None:intergenic |
| ATAAGAAACATGTTGCTGCT+TGG | 0.562764 | 8_4:-53011452 | Msa1333000:CDS |
| GAACTTGGAGATGAAGAAGG+TGG | 0.568927 | 8_4:+53013586 | None:intergenic |
| TCAAAGTTTGAGTCTTTCGG+TGG | 0.575726 | 8_4:+53013376 | None:intergenic |
| CTCAAACTTTGATGGAACGC+TGG | 0.576259 | 8_4:-53013365 | Msa1333000:CDS |
| GTAGAACTTGGAGATGAAGA+AGG | 0.581057 | 8_4:+53013583 | None:intergenic |
| TAAGAGGAAGGGATGCAAAA+GGG | 0.581100 | 8_4:-53010518 | Msa1333000:CDS |
| CGGTGAAAACTCCGGTGAGG+AGG | 0.598822 | 8_4:-53013320 | Msa1333000:CDS |
| TTAGGTCGTAGGGATGTGGA+AGG | 0.599437 | 8_4:-53010574 | Msa1333000:intron |
| AAACTTTGATGGAACGCTGG+TGG | 0.610686 | 8_4:-53013362 | Msa1333000:CDS |
| AGCAGAGGAAATGCTTCTGA+AGG | 0.612307 | 8_4:-53013098 | Msa1333000:intron |
| CTTTCGTTATCAAGAAGCAG+AGG | 0.617149 | 8_4:-53013113 | Msa1333000:CDS |
| TGCACCGTGTTGCACTCTCA+GGG | 0.617357 | 8_4:-53013461 | Msa1333000:CDS |
| AGGGTAAAATGGGAACTTTG+AGG | 0.621281 | 8_4:+53013515 | None:intergenic |
| TTTCACCGGAAAACTCCGGC+CGG | 0.625296 | 8_4:+53013335 | None:intergenic |
| AAACATGTTGCTGCTTGGCA+TGG | 0.627009 | 8_4:-53011447 | Msa1333000:intron |
| TCTCAACTACAAACCAAATG+TGG | 0.628965 | 8_4:+53013654 | None:intergenic |
| CGGTGCATGTGCAGTGAGGT+GGG | 0.629658 | 8_4:+53013477 | None:intergenic |
| AAAATGCCGATATTTGAACC+GGG | 0.632284 | 8_4:-53013220 | Msa1333000:CDS |
| ACGGTGCATGTGCAGTGAGG+TGG | 0.632473 | 8_4:+53013476 | None:intergenic |
| ATTGTGAAAGAGGAAGCTAA+AGG | 0.639379 | 8_4:-53013280 | Msa1333000:CDS |
| TTTCTTATCAGCAACCGTTG+CGG | 0.644090 | 8_4:+53011467 | None:intergenic |
| CAACTACAAACCAAATGTGG+AGG | 0.645653 | 8_4:+53013657 | None:intergenic |
| TGGGAAGATGAAGAATGGAA+GGG | 0.652700 | 8_4:+53013496 | None:intergenic |
| GGTTGAGGATGATGATGATG+CGG | 0.656448 | 8_4:-53010542 | Msa1333000:CDS |
| GATGATGCGGATAAGAGGAA+GGG | 0.668144 | 8_4:-53010529 | Msa1333000:CDS |
| TTCCGGTGAAAACTCCGGTG+AGG | 0.671694 | 8_4:-53013323 | Msa1333000:CDS |
| AAATGCCGATATTTGAACCG+GGG | 0.696172 | 8_4:-53013219 | Msa1333000:CDS |
| AACACGGTGCATGTGCAGTG+AGG | 0.727076 | 8_4:+53013473 | None:intergenic |
| GAGTCCCTGAGAGTGCAACA+CGG | 0.729774 | 8_4:+53013457 | None:intergenic |
| ATTTCGGGTACTCTGCTCGG+AGG | 0.758281 | 8_4:+53013405 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAAGTAACTTTTTTT+TGG | + | chr8_4:53012096-53012115 | None:intergenic | 10.0% |
| !!! | TTTTCAGAAAATCTTAAAAT+GGG | + | chr8_4:53011121-53011140 | None:intergenic | 15.0% |
| !!! | ATTTTCAGAAAATCTTAAAA+TGG | + | chr8_4:53011122-53011141 | None:intergenic | 15.0% |
| !!! | TTTTGGTTACATAAAATTTA+GGG | + | chr8_4:53012079-53012098 | None:intergenic | 15.0% |
| !!! | TTTTTGGTTACATAAAATTT+AGG | + | chr8_4:53012080-53012099 | None:intergenic | 15.0% |
| !!! | AAATTTTGCTATATTTGAGT+CGG | - | chr8_4:53011138-53011157 | Msa1333000:intron | 20.0% |
| !! | AATAAACTAACAACATCTTA+TGG | + | chr8_4:53011872-53011891 | None:intergenic | 20.0% |
| !!! | AAACAATTTGACTTTCTTTT+TGG | - | chr8_4:53011945-53011964 | Msa1333000:intron | 20.0% |
| !!! | AACAATTTGACTTTCTTTTT+GGG | - | chr8_4:53011946-53011965 | Msa1333000:intron | 20.0% |
| !! | ATGAGAAAGATTACTTATTT+CGG | + | chr8_4:53012281-53012300 | None:intergenic | 20.0% |
| !! | AAATCGCTAAATTAAAAACA+GGG | + | chr8_4:53012924-53012943 | None:intergenic | 20.0% |
| !! | AAAATCGCTAAATTAAAAAC+AGG | + | chr8_4:53012925-53012944 | None:intergenic | 20.0% |
| !! | ATTCAAAAAATGAAGACATA+TGG | - | chr8_4:53013116-53013135 | Msa1333000:CDS | 20.0% |
| !!! | TATAAGCCTTTTTTGTTTTT+AGG | - | chr8_4:53013585-53013604 | Msa1333000:CDS | 20.0% |
| ! | TGAATTTGAAGAGATAGTTT+GGG | + | chr8_4:53010641-53010660 | None:intergenic | 25.0% |
| ! | TTGAATTTGAAGAGATAGTT+TGG | + | chr8_4:53010642-53010661 | None:intergenic | 25.0% |
| !!! | AATTTTGCTATATTTGAGTC+GGG | - | chr8_4:53011139-53011158 | Msa1333000:intron | 25.0% |
| ! | AGAAATAACTTACACATAAG+TGG | - | chr8_4:53011289-53011308 | Msa1333000:intron | 25.0% |
| !! | CATCTTAACCCAAAATTTTA+AGG | - | chr8_4:53011679-53011698 | Msa1333000:intron | 25.0% |
| !! | ACTCAATGCCTTAAAATTTT+GGG | + | chr8_4:53011690-53011709 | None:intergenic | 25.0% |
| !! | TACTCAATGCCTTAAAATTT+TGG | + | chr8_4:53011691-53011710 | None:intergenic | 25.0% |
| ! | AATCGCTAAATTAAAAACAG+GGG | + | chr8_4:53012923-53012942 | None:intergenic | 25.0% |
| ! | CAAAAAAGGGGAAAATTATA+GGG | + | chr8_4:53012951-53012970 | None:intergenic | 25.0% |
| ! | TCATCACTAAAATATATGAG+GGG | + | chr8_4:53012983-53013002 | None:intergenic | 25.0% |
| ! | GTCATCACTAAAATATATGA+GGG | + | chr8_4:53012984-53013003 | None:intergenic | 25.0% |
| ! | TGTCATCACTAAAATATATG+AGG | + | chr8_4:53012985-53013004 | None:intergenic | 25.0% |
| !! | GAATTTTCAAATTAGACACA+TGG | - | chr8_4:53013081-53013100 | Msa1333000:intron | 25.0% |
| !!! | AAAGTTACTGCTTTTTTGAT+TGG | - | chr8_4:53013472-53013491 | Msa1333000:CDS | 25.0% |
| ! | TTATGTTTGAAGAAGGTTTA+TGG | - | chr8_4:53013552-53013571 | Msa1333000:CDS | 25.0% |
| !!! | TTTTTTGTTTTTAGGTCGTA+GGG | - | chr8_4:53013593-53013612 | Msa1333000:CDS | 25.0% |
| !! | TTGAGTTCATTTCTGGTTAA+CGG | + | chr8_4:53010560-53010579 | None:intergenic | 30.0% |
| AAAGGTTCTTCAATTGATGT+CGG | - | chr8_4:53010915-53010934 | Msa1333000:intron | 30.0% | |
| !! | TAAGCTTTTGACTGTGAATT+TGG | - | chr8_4:53011004-53011023 | Msa1333000:intron | 30.0% |
| !!! | AATTCTGTTTTTGCATGTGA+TGG | - | chr8_4:53011561-53011580 | Msa1333000:intron | 30.0% |
| !! | ATGGAATGGATTATTTGTGA+TGG | - | chr8_4:53011580-53011599 | Msa1333000:intron | 30.0% |
| !! | TGGAATGGATTATTTGTGAT+GGG | - | chr8_4:53011581-53011600 | Msa1333000:intron | 30.0% |
| !! | TATGATAATGCCCGTATTTT+AGG | + | chr8_4:53011620-53011639 | None:intergenic | 30.0% |
| AAATACGGGCATTATCATAT+TGG | - | chr8_4:53011621-53011640 | Msa1333000:intron | 30.0% | |
| AATACGGGCATTATCATATT+GGG | - | chr8_4:53011622-53011641 | Msa1333000:intron | 30.0% | |
| TGTGTTGTCTAATTCTATCT+GGG | + | chr8_4:53011661-53011680 | None:intergenic | 30.0% | |
| ATGTGTTGTCTAATTCTATC+TGG | + | chr8_4:53011662-53011681 | None:intergenic | 30.0% | |
| TCTTACATTGGATGGAAAAA+TGG | + | chr8_4:53011759-53011778 | None:intergenic | 30.0% | |
| AGTACATAATATCGAACTGT+CGG | + | chr8_4:53011803-53011822 | None:intergenic | 30.0% | |
| ! | TACATAAAATTTAGGGTGAG+CGG | + | chr8_4:53012072-53012091 | None:intergenic | 30.0% |
| AGTTGTTTATCCAAACTAGT+TGG | - | chr8_4:53012158-53012177 | Msa1333000:intron | 30.0% | |
| TGTTGAAGTTAGTTACAAGT+TGG | - | chr8_4:53012185-53012204 | Msa1333000:intron | 30.0% | |
| !! | AAGTTAGTTACAAGTTGGTT+AGG | - | chr8_4:53012190-53012209 | Msa1333000:intron | 30.0% |
| GCTGTTCTTGAAAAGAAAAT+GGG | - | chr8_4:53012655-53012674 | Msa1333000:intron | 30.0% | |
| AAAAGAAAATGGGAAATGTC+AGG | - | chr8_4:53012665-53012684 | Msa1333000:intron | 30.0% | |
| ACAATTGGTAAAATATAGGG+GGG | + | chr8_4:53012888-53012907 | None:intergenic | 30.0% | |
| CACAATTGGTAAAATATAGG+GGG | + | chr8_4:53012889-53012908 | None:intergenic | 30.0% | |
| GCACAATTGGTAAAATATAG+GGG | + | chr8_4:53012890-53012909 | None:intergenic | 30.0% | |
| CGCACAATTGGTAAAATATA+GGG | + | chr8_4:53012891-53012910 | None:intergenic | 30.0% | |
| TCGCACAATTGGTAAAATAT+AGG | + | chr8_4:53012892-53012911 | None:intergenic | 30.0% | |
| ATCGCTAAATTAAAAACAGG+GGG | + | chr8_4:53012922-53012941 | None:intergenic | 30.0% | |
| CCAAAAAAGGGGAAAATTAT+AGG | + | chr8_4:53012952-53012971 | None:intergenic | 30.0% | |
| ! | CCTATAATTTTCCCCTTTTT+TGG | - | chr8_4:53012949-53012968 | Msa1333000:intron | 30.0% |
| !!! | TATTTTAGTGATGACATGTC+TGG | - | chr8_4:53012989-53013008 | Msa1333000:intron | 30.0% |
| ! | GAGGATTTTATGTTTGAAGA+AGG | - | chr8_4:53013545-53013564 | Msa1333000:CDS | 30.0% |
| CTACGACCTAAAAACAAAAA+AGG | + | chr8_4:53013594-53013613 | None:intergenic | 30.0% | |
| !!! | CTTTTTTGTTTTTAGGTCGT+AGG | - | chr8_4:53013592-53013611 | Msa1333000:CDS | 30.0% |
| TCTCAACTACAAACCAAATG+TGG | + | chr8_4:53010526-53010545 | None:intergenic | 35.0% | |
| TGAGTGAGAATTGTAGAACT+TGG | + | chr8_4:53010609-53010628 | None:intergenic | 35.0% | |
| !! | GAAGAGATAGTTTGGGTTTT+TGG | + | chr8_4:53010634-53010653 | None:intergenic | 35.0% |
| GAAGAATGGAAGGGTAAAAT+GGG | + | chr8_4:53010675-53010694 | None:intergenic | 35.0% | |
| TGAAGAATGGAAGGGTAAAA+TGG | + | chr8_4:53010676-53010695 | None:intergenic | 35.0% | |
| TTTCGGTGGAATGTAATTTC+GGG | + | chr8_4:53010790-53010809 | None:intergenic | 35.0% | |
| CTTTCGGTGGAATGTAATTT+CGG | + | chr8_4:53010791-53010810 | None:intergenic | 35.0% | |
| CCATCAAAGTTTGAGTCTTT+CGG | + | chr8_4:53010807-53010826 | None:intergenic | 35.0% | |
| ATTGTGAAAGAGGAAGCTAA+AGG | - | chr8_4:53010897-53010916 | Msa1333000:intron | 35.0% | |
| AAGGTTCTTCAATTGATGTC+GGG | - | chr8_4:53010916-53010935 | Msa1333000:intron | 35.0% | |
| GAAAATGCCGATATTTGAAC+CGG | - | chr8_4:53010956-53010975 | Msa1333000:intron | 35.0% | |
| AAAATGCCGATATTTGAACC+GGG | - | chr8_4:53010957-53010976 | Msa1333000:intron | 35.0% | |
| CACAGTCAAAAGCTTATCTT+TGG | + | chr8_4:53011000-53011019 | None:intergenic | 35.0% | |
| TTTGACTGTGAATTTGGACT+TGG | - | chr8_4:53011010-53011029 | Msa1333000:intron | 35.0% | |
| ! | GTTGTATAAGGCTAAGGTTT+TGG | - | chr8_4:53011034-53011053 | Msa1333000:intron | 35.0% |
| CGCTTAAAGAAGCTACATAA+CGG | - | chr8_4:53011353-53011372 | Msa1333000:intron | 35.0% | |
| GCTTAAAGAAGCTACATAAC+GGG | - | chr8_4:53011354-53011373 | Msa1333000:intron | 35.0% | |
| !! | GTTTGTTGTTGTCTTGTTCA+TGG | - | chr8_4:53011381-53011400 | Msa1333000:intron | 35.0% |
| !! | CATGGAAGTGTTTAAGCTAT+TGG | - | chr8_4:53011399-53011418 | Msa1333000:intron | 35.0% |
| AGCTAGAGAGATTTATGAGA+AGG | - | chr8_4:53011487-53011506 | Msa1333000:CDS | 35.0% | |
| GCTAGAGAGATTTATGAGAA+GGG | - | chr8_4:53011488-53011507 | Msa1333000:CDS | 35.0% | |
| AGGGTGAAAATGCATTCATT+TGG | - | chr8_4:53011525-53011544 | Msa1333000:CDS | 35.0% | |
| TGAAAATGCATTCATTTGGC+AGG | - | chr8_4:53011529-53011548 | Msa1333000:CDS | 35.0% | |
| !! | TGTTTTTGCATGTGATGGAA+TGG | - | chr8_4:53011566-53011585 | Msa1333000:intron | 35.0% |
| !! | ATTATTTGTGATGGGTCATG+AGG | - | chr8_4:53011589-53011608 | Msa1333000:intron | 35.0% |
| !! | TTATTTGTGATGGGTCATGA+GGG | - | chr8_4:53011590-53011609 | Msa1333000:intron | 35.0% |
| AGTAAGAGTCTTACATTGGA+TGG | + | chr8_4:53011767-53011786 | None:intergenic | 35.0% | |
| TGTGAGTAAGAGTCTTACAT+TGG | + | chr8_4:53011771-53011790 | None:intergenic | 35.0% | |
| AAGCATTTGTGAGACTGTTT+AGG | - | chr8_4:53011832-53011851 | Msa1333000:intron | 35.0% | |
| ! | CTACTATTCTAGAGAGCTAA+TGG | + | chr8_4:53011896-53011915 | None:intergenic | 35.0% |
| TCAACAATCTCCAACTAGTT+TGG | + | chr8_4:53012171-53012190 | None:intergenic | 35.0% | |
| ACTCTCAAACTCAAGCTTAT+TGG | - | chr8_4:53012359-53012378 | Msa1333000:intron | 35.0% | |
| ! | AAGCTTATTGGCTAATCAAC+TGG | - | chr8_4:53012371-53012390 | Msa1333000:intron | 35.0% |
| AGTATAGCTTAGACATCACA+TGG | - | chr8_4:53012435-53012454 | Msa1333000:intron | 35.0% | |
| ATTGTTTACTTTACACAGCC+TGG | - | chr8_4:53012469-53012488 | Msa1333000:intron | 35.0% | |
| TGTCTTCATCTGGTAACATT+AGG | - | chr8_4:53012529-53012548 | Msa1333000:intron | 35.0% | |
| AAGTTCTCTTTGAACAGTGT+TGG | - | chr8_4:53012632-53012651 | Msa1333000:intron | 35.0% | |
| AGTTCTCTTTGAACAGTGTT+GGG | - | chr8_4:53012633-53012652 | Msa1333000:intron | 35.0% | |
| GGCTGTTCTTGAAAAGAAAA+TGG | - | chr8_4:53012654-53012673 | Msa1333000:intron | 35.0% | |
| ATAAGAAACATGTTGCTGCT+TGG | - | chr8_4:53012725-53012744 | Msa1333000:intron | 35.0% | |
| AATTGGTAAAATATAGGGGG+GGG | + | chr8_4:53012886-53012905 | None:intergenic | 35.0% | |
| CAATTGGTAAAATATAGGGG+GGG | + | chr8_4:53012887-53012906 | None:intergenic | 35.0% | |
| TGTTTGAAGAAGGTTTATGG+TGG | - | chr8_4:53013555-53013574 | Msa1333000:CDS | 35.0% | |
| CTATCTTCTTCCTCCACATT+TGG | - | chr8_4:53010510-53010529 | Msa1333000:CDS | 40.0% | |
| CAACTACAAACCAAATGTGG+AGG | + | chr8_4:53010523-53010542 | None:intergenic | 40.0% | |
| GAGGGAATTGAGTTCATTTC+TGG | + | chr8_4:53010567-53010586 | None:intergenic | 40.0% | |
| GTAGAACTTGGAGATGAAGA+AGG | + | chr8_4:53010597-53010616 | None:intergenic | 40.0% | |
| AGGGTAAAATGGGAACTTTG+AGG | + | chr8_4:53010665-53010684 | None:intergenic | 40.0% | |
| TGGGAAGATGAAGAATGGAA+GGG | + | chr8_4:53010684-53010703 | None:intergenic | 40.0% | |
| TCAAAGTTTGAGTCTTTCGG+TGG | + | chr8_4:53010804-53010823 | None:intergenic | 40.0% | |
| CCGAAAGACTCAAACTTTGA+TGG | - | chr8_4:53010804-53010823 | Msa1333000:intron | 40.0% | |
| GGAGAAGGAAATTGTGAAAG+AGG | - | chr8_4:53010887-53010906 | Msa1333000:intron | 40.0% | |
| AAATGCCGATATTTGAACCG+GGG | - | chr8_4:53010958-53010977 | Msa1333000:intron | 40.0% | |
| TTTGGACTTGGCGTTGTATA+AGG | - | chr8_4:53011022-53011041 | Msa1333000:intron | 40.0% | |
| CTTTCGTTATCAAGAAGCAG+AGG | - | chr8_4:53011064-53011083 | Msa1333000:intron | 40.0% | |
| ! | TTAAGCTATTGGCCTGAAGA+TGG | - | chr8_4:53011410-53011429 | Msa1333000:intron | 40.0% |
| ACATAAAGCCTACCATCTTC+AGG | + | chr8_4:53011425-53011444 | None:intergenic | 40.0% | |
| !! | TATTTGTGATGGGTCATGAG+GGG | - | chr8_4:53011591-53011610 | Msa1333000:intron | 40.0% |
| ATGAGGGGACTCCTAAAATA+CGG | - | chr8_4:53011606-53011625 | Msa1333000:intron | 40.0% | |
| GTTGTCTAATTCTATCTGGG+TGG | + | chr8_4:53011658-53011677 | None:intergenic | 40.0% | |
| CATTTGTGAGACTGTTTAGG+AGG | - | chr8_4:53011835-53011854 | Msa1333000:intron | 40.0% | |
| TGAGACTGTTTAGGAGGTTA+CGG | - | chr8_4:53011841-53011860 | Msa1333000:intron | 40.0% | |
| CCAAGGTAGAGAAGACATTT+AGG | + | chr8_4:53012036-53012055 | None:intergenic | 40.0% | |
| CCTAAATGTCTTCTCTACCT+TGG | - | chr8_4:53012033-53012052 | Msa1333000:intron | 40.0% | |
| AAGCTAGAACTGTCTTCATC+TGG | - | chr8_4:53012519-53012538 | Msa1333000:intron | 40.0% | |
| TCATCTGGTAACATTAGGAG+TGG | - | chr8_4:53012534-53012553 | Msa1333000:intron | 40.0% | |
| CATCTGGTAACATTAGGAGT+GGG | - | chr8_4:53012535-53012554 | Msa1333000:intron | 40.0% | |
| TTTCTTATCAGCAACCGTTG+CGG | + | chr8_4:53012713-53012732 | None:intergenic | 40.0% | |
| ATTGGTAAAATATAGGGGGG+GGG | + | chr8_4:53012885-53012904 | None:intergenic | 40.0% | |
| GGGTCTTCAAACCAAAAAAG+GGG | + | chr8_4:53012963-53012982 | None:intergenic | 40.0% | |
| GGGGTCTTCAAACCAAAAAA+GGG | + | chr8_4:53012964-53012983 | None:intergenic | 40.0% | |
| AGGGGTCTTCAAACCAAAAA+AGG | + | chr8_4:53012965-53012984 | None:intergenic | 40.0% | |
| TGTTGGAGGAGGATTGAATA+GGG | + | chr8_4:53013191-53013210 | None:intergenic | 40.0% | |
| ATGTTGGAGGAGGATTGAAT+AGG | + | chr8_4:53013192-53013211 | None:intergenic | 40.0% | |
| !! | TATTTTTGTCGATGGCGAGA+AGG | + | chr8_4:53013243-53013262 | None:intergenic | 40.0% |
| GCCATCGACAAAAATAATCG+CGG | - | chr8_4:53013247-53013266 | Msa1333000:CDS | 40.0% | |
| ! | TACGATGGAGAAGAGCATAA+CGG | + | chr8_4:53013291-53013310 | None:intergenic | 40.0% |
| ! | CGTCTAAGGATTTTACAACG+AGG | - | chr8_4:53013526-53013545 | Msa1333000:CDS | 40.0% |
| ! | ATGATGATGATGCGGATAAG+AGG | - | chr8_4:53013643-53013662 | Msa1333000:five_prime_UTR | 40.0% |
| ATAAGAGGAAGGGATGCAAA+AGG | - | chr8_4:53013658-53013677 | Msa1333000:five_prime_UTR | 40.0% | |
| TAAGAGGAAGGGATGCAAAA+GGG | - | chr8_4:53013659-53013678 | Msa1333000:five_prime_UTR | 40.0% | |
| GAACTTGGAGATGAAGAAGG+TGG | + | chr8_4:53010594-53010613 | None:intergenic | 45.0% | |
| GTGGGAAGATGAAGAATGGA+AGG | + | chr8_4:53010685-53010704 | None:intergenic | 45.0% | |
| TGAGGTGGGAAGATGAAGAA+TGG | + | chr8_4:53010689-53010708 | None:intergenic | 45.0% | |
| ! | GTAATTTCGGGTACTCTGCT+CGG | + | chr8_4:53010778-53010797 | None:intergenic | 45.0% |
| CTCAAACTTTGATGGAACGC+TGG | - | chr8_4:53010812-53010831 | Msa1333000:intron | 45.0% | |
| AAACTTTGATGGAACGCTGG+TGG | - | chr8_4:53010815-53010834 | Msa1333000:intron | 45.0% | |
| ! | GAGTTTTCACCGGAAAACTC+CGG | + | chr8_4:53010849-53010868 | None:intergenic | 45.0% |
| ! | GAGTTTTCCGGTGAAAACTC+CGG | - | chr8_4:53010849-53010868 | Msa1333000:intron | 45.0% |
| TGAGGAGGTGAAAAAGGAGA+AGG | - | chr8_4:53010872-53010891 | Msa1333000:intron | 45.0% | |
| ACTCTCCCCGGTTCAAATAT+CGG | + | chr8_4:53010966-53010985 | None:intergenic | 45.0% | |
| CTTGGCGTTGTATAAGGCTA+AGG | - | chr8_4:53011028-53011047 | Msa1333000:intron | 45.0% | |
| AGCAGAGGAAATGCTTCTGA+AGG | - | chr8_4:53011079-53011098 | Msa1333000:intron | 45.0% | |
| ! | AGAGGAAATGCTTCTGAAGG+TGG | - | chr8_4:53011082-53011101 | Msa1333000:intron | 45.0% |
| ! | GAGGAAATGCTTCTGAAGGT+GGG | - | chr8_4:53011083-53011102 | Msa1333000:intron | 45.0% |
| ! | AGGAAATGCTTCTGAAGGTG+GGG | - | chr8_4:53011084-53011103 | Msa1333000:intron | 45.0% |
| ! | GGTAGGCTTTATGTTGCACT+CGG | - | chr8_4:53011431-53011450 | Msa1333000:intron | 45.0% |
| ! | GTAGGCTTTATGTTGCACTC+GGG | - | chr8_4:53011432-53011451 | Msa1333000:intron | 45.0% |
| GATTTATGAGAAGGGTTGCC+AGG | - | chr8_4:53011496-53011515 | Msa1333000:CDS | 45.0% | |
| TGAGGGGACTCCTAAAATAC+GGG | - | chr8_4:53011607-53011626 | Msa1333000:intron | 45.0% | |
| !! | GGCTCAAAGAGCACTTACAA+AGG | + | chr8_4:53012015-53012034 | None:intergenic | 45.0% |
| TGTCTTCTCTACCTTGGACA+AGG | - | chr8_4:53012039-53012058 | Msa1333000:intron | 45.0% | |
| GTCTTCTCTACCTTGGACAA+GGG | - | chr8_4:53012040-53012059 | Msa1333000:intron | 45.0% | |
| ! | AGAACTTTTCGATGCCGCAA+CGG | - | chr8_4:53012696-53012715 | Msa1333000:intron | 45.0% |
| ! | AAACATGTTGCTGCTTGGCA+TGG | - | chr8_4:53012730-53012749 | Msa1333000:intron | 45.0% |
| TTGGTAAAATATAGGGGGGG+GGG | + | chr8_4:53012884-53012903 | None:intergenic | 45.0% | |
| GAGGATTGAATAGGGAGACA+CGG | + | chr8_4:53013183-53013202 | None:intergenic | 45.0% | |
| !!! | GCCGCGATTATTTTTGTCGA+TGG | + | chr8_4:53013251-53013270 | None:intergenic | 45.0% |
| GGTGTTTGAACGTGATACGA+TGG | + | chr8_4:53013306-53013325 | None:intergenic | 45.0% | |
| ATCACGTTCAAACACCGAGT+CGG | - | chr8_4:53013310-53013329 | Msa1333000:CDS | 45.0% | |
| TTTGCTTGTCGCTACGTCTA+AGG | - | chr8_4:53013512-53013531 | Msa1333000:CDS | 45.0% | |
| !!! | GTTTTTAGGTCGTAGGGATG+TGG | - | chr8_4:53013599-53013618 | Msa1333000:CDS | 45.0% |
| ! | GGTTGAGGATGATGATGATG+CGG | - | chr8_4:53013635-53013654 | Msa1333000:five_prime_UTR | 45.0% |
| ! | TGATGATGCGGATAAGAGGA+AGG | - | chr8_4:53013647-53013666 | Msa1333000:five_prime_UTR | 45.0% |
| GATGATGCGGATAAGAGGAA+GGG | - | chr8_4:53013648-53013667 | Msa1333000:five_prime_UTR | 45.0% | |
| !! | ATTAAAAAAAAAACAAAAAA+TGG | - | chr8_4:53013059-53013078 | Msa1333000:intron | 5.0% |
| GATGAAGAAGGTGGAGGAGA+GGG | + | chr8_4:53010585-53010604 | None:intergenic | 50.0% | |
| AGATGAAGAAGGTGGAGGAG+AGG | + | chr8_4:53010586-53010605 | None:intergenic | 50.0% | |
| CTTGGAGATGAAGAAGGTGG+AGG | + | chr8_4:53010591-53010610 | None:intergenic | 50.0% | |
| CAGGGACTCAACTTCAGTGT+TGG | - | chr8_4:53010734-53010753 | Msa1333000:intron | 50.0% | |
| !! | CTCCTTTTTCACCTCCTCAC+CGG | + | chr8_4:53010871-53010890 | None:intergenic | 50.0% |
| ! | GCTATTGGCCTGAAGATGGT+AGG | - | chr8_4:53011414-53011433 | Msa1333000:intron | 50.0% |
| ! | CATTTTCACCCTGAGTAGCC+TGG | + | chr8_4:53011517-53011536 | None:intergenic | 50.0% |
| ! | CTAGCTTGTACCAGCCTCAA+AGG | + | chr8_4:53012506-53012525 | None:intergenic | 50.0% |
| ! | ATGTTGCTGCTTGGCATGGT+TGG | - | chr8_4:53012734-53012753 | Msa1333000:intron | 50.0% |
| ! | TGTTGCTGCTTGGCATGGTT+GGG | - | chr8_4:53012735-53012754 | Msa1333000:intron | 50.0% |
| TGGTAAAATATAGGGGGGGG+GGG | + | chr8_4:53012883-53012902 | None:intergenic | 50.0% | |
| GGGGTGCAAAATCGCACAAT+TGG | + | chr8_4:53012903-53012922 | None:intergenic | 50.0% | |
| TTTGTCGATGGCGAGAAGGA+AGG | + | chr8_4:53013239-53013258 | None:intergenic | 50.0% | |
| ! | GATGGAGAAGAGCATAACGG+CGG | + | chr8_4:53013288-53013307 | None:intergenic | 50.0% |
| TGAATTTCACCGCTCCGACT+CGG | + | chr8_4:53013327-53013346 | None:intergenic | 50.0% | |
| AGTCGGAGCGGTGAAATTCA+GGG | - | chr8_4:53013327-53013346 | Msa1333000:CDS | 50.0% | |
| GATCTGAACAAGCTTCCCGA+CGG | + | chr8_4:53013377-53013396 | None:intergenic | 50.0% | |
| ! | TCGGGAAGCTTGTTCAGATC+TGG | - | chr8_4:53013377-53013396 | Msa1333000:CDS | 50.0% |
| ! | GGAAGCTTGTTCAGATCTGG+AGG | - | chr8_4:53013380-53013399 | Msa1333000:CDS | 50.0% |
| TTAGGTCGTAGGGATGTGGA+AGG | - | chr8_4:53013603-53013622 | Msa1333000:CDS | 50.0% | |
| TAGGTCGTAGGGATGTGGAA+GGG | - | chr8_4:53013604-53013623 | Msa1333000:CDS | 50.0% | |
| GGATGTGGAAGGGGATTTGA+TGG | - | chr8_4:53013614-53013633 | Msa1333000:exon | 50.0% | |
| ! | GGAAGGGGATTTGATGGTTG+AGG | - | chr8_4:53013620-53013639 | Msa1333000:exon | 50.0% |
| AACACGGTGCATGTGCAGTG+AGG | + | chr8_4:53010707-53010726 | None:intergenic | 55.0% | |
| ATGCACCGTGTTGCACTCTC+AGG | - | chr8_4:53010715-53010734 | Msa1333000:intron | 55.0% | |
| TGCACCGTGTTGCACTCTCA+GGG | - | chr8_4:53010716-53010735 | Msa1333000:intron | 55.0% | |
| ! | GAGTCCCTGAGAGTGCAACA+CGG | + | chr8_4:53010723-53010742 | None:intergenic | 55.0% |
| ! | ATTTCGGGTACTCTGCTCGG+AGG | + | chr8_4:53010775-53010794 | None:intergenic | 55.0% |
| TTTCACCGGAAAACTCCGGC+CGG | + | chr8_4:53010845-53010864 | None:intergenic | 55.0% | |
| TTCCGGTGAAAACTCCGGTG+AGG | - | chr8_4:53010854-53010873 | Msa1333000:intron | 55.0% | |
| ! | CTCCTCACCGGAGTTTTCAC+CGG | + | chr8_4:53010859-53010878 | None:intergenic | 55.0% |
| CTCCGGTGAGGAGGTGAAAA+AGG | - | chr8_4:53010866-53010885 | Msa1333000:intron | 55.0% | |
| ! | GAGTCTGATTCGACTCTCCC+CGG | + | chr8_4:53010978-53010997 | None:intergenic | 55.0% |
| AAGGGTTGCCAGGCTACTCA+GGG | - | chr8_4:53011506-53011525 | Msa1333000:CDS | 55.0% | |
| !! | TTCCTCCAAGAGCACTAGCG+GGG | + | chr8_4:53011978-53011997 | None:intergenic | 55.0% |
| !! | CTTCCTCCAAGAGCACTAGC+GGG | + | chr8_4:53011979-53011998 | None:intergenic | 55.0% |
| !! | CCTTCCTCCAAGAGCACTAG+CGG | + | chr8_4:53011980-53011999 | None:intergenic | 55.0% |
| TACACAGCCTGGCATGCCTA+AGG | - | chr8_4:53012480-53012499 | Msa1333000:intron | 55.0% | |
| TCAAAGGCCTTAGGCATGCC+AGG | + | chr8_4:53012490-53012509 | None:intergenic | 55.0% | |
| TGGCATGCCTAAGGCCTTTG+AGG | - | chr8_4:53012489-53012508 | Msa1333000:intron | 55.0% | |
| !! | ATGCCTAAGGCCTTTGAGGC+TGG | - | chr8_4:53012493-53012512 | Msa1333000:intron | 55.0% |
| GTACCAGCCTCAAAGGCCTT+AGG | + | chr8_4:53012499-53012518 | None:intergenic | 55.0% | |
| AAGCTACTCCTCTCTCCCGT+CGG | - | chr8_4:53013152-53013171 | Msa1333000:CDS | 55.0% | |
| !! | ATGGCGAGAAGGAAGGTGTC+GGG | + | chr8_4:53013232-53013251 | None:intergenic | 55.0% |
| ! | GATGGCGAGAAGGAAGGTGT+CGG | + | chr8_4:53013233-53013252 | None:intergenic | 55.0% |
| !! | CATAACGGCGGAGGTTGATG+AGG | + | chr8_4:53013276-53013295 | None:intergenic | 55.0% |
| GTTCAAACACCGAGTCGGAG+CGG | - | chr8_4:53013315-53013334 | Msa1333000:CDS | 55.0% | |
| GAGTCGGAGCGGTGAAATTC+AGG | - | chr8_4:53013326-53013345 | Msa1333000:CDS | 55.0% | |
| GACGGCGATGAGTTTCCTGT+CGG | + | chr8_4:53013353-53013372 | None:intergenic | 55.0% | |
| AGGTCGTAGGGATGTGGAAG+GGG | - | chr8_4:53013605-53013624 | Msa1333000:CDS | 55.0% | |
| CGGTGCATGTGCAGTGAGGT+GGG | + | chr8_4:53010703-53010722 | None:intergenic | 60.0% | |
| ACGGTGCATGTGCAGTGAGG+TGG | + | chr8_4:53010704-53010723 | None:intergenic | 60.0% | |
| GGTACTCTGCTCGGAGGAAG+GGG | + | chr8_4:53010769-53010788 | None:intergenic | 60.0% | |
| GGGTACTCTGCTCGGAGGAA+GGG | + | chr8_4:53010770-53010789 | None:intergenic | 60.0% | |
| ATGGAACGCTGGTGGTTCGC+CGG | - | chr8_4:53010823-53010842 | Msa1333000:intron | 60.0% | |
| CGGTGAAAACTCCGGTGAGG+AGG | - | chr8_4:53010857-53010876 | Msa1333000:intron | 60.0% | |
| GAAGGGTTGCCAGGCTACTC+AGG | - | chr8_4:53011505-53011524 | Msa1333000:CDS | 60.0% | |
| TTGAGCCCCGCTAGTGCTCT+TGG | - | chr8_4:53011970-53011989 | Msa1333000:intron | 60.0% | |
| CCGCTAGTGCTCTTGGAGGA+AGG | - | chr8_4:53011977-53011996 | Msa1333000:intron | 60.0% | |
| GCGGATGATGCCCTTGTCCA+AGG | + | chr8_4:53012053-53012072 | None:intergenic | 60.0% | |
| AGCTACTCCTCTCTCCCGTC+GGG | - | chr8_4:53013153-53013172 | Msa1333000:CDS | 60.0% | |
| CGATGCGGGAATGTTGGAGG+AGG | + | chr8_4:53013202-53013221 | None:intergenic | 60.0% | |
| TGACGGCGATGCGGGAATGT+TGG | + | chr8_4:53013208-53013227 | None:intergenic | 60.0% | |
| !! | GAAGGAAGGTGTCGGGGTGA+CGG | + | chr8_4:53013225-53013244 | None:intergenic | 60.0% |
| !! | TGGCGAGAAGGAAGGTGTCG+GGG | + | chr8_4:53013231-53013250 | None:intergenic | 60.0% |
| !! | AACGGCGGAGGTTGATGAGG+AGG | + | chr8_4:53013273-53013292 | None:intergenic | 60.0% |
| ! | GGAGAAGAGCATAACGGCGG+AGG | + | chr8_4:53013285-53013304 | None:intergenic | 60.0% |
| CGGTGAAATTCAGGGCCGAC+AGG | - | chr8_4:53013335-53013354 | Msa1333000:CDS | 60.0% | |
| AAACTCATCGCCGTCGCCGT+CGG | - | chr8_4:53013358-53013377 | Msa1333000:CDS | 60.0% | |
| AACAAGCTTCCCGACGGCGA+CGG | + | chr8_4:53013371-53013390 | None:intergenic | 60.0% | |
| CGGGTACTCTGCTCGGAGGA+AGG | + | chr8_4:53010771-53010790 | None:intergenic | 65.0% | |
| ! | GTTCGCCGGCCGGAGTTTTC+CGG | - | chr8_4:53010837-53010856 | Msa1333000:intron | 65.0% |
| AGCCCCGCTAGTGCTCTTGG+AGG | - | chr8_4:53011973-53011992 | Msa1333000:intron | 65.0% | |
| GCTACTCCTCTCTCCCGTCG+GGG | - | chr8_4:53013154-53013173 | Msa1333000:CDS | 65.0% | |
| GGAGACACGGTTTCCCCGAC+GGG | + | chr8_4:53013170-53013189 | None:intergenic | 65.0% | |
| GGGAGACACGGTTTCCCCGA+CGG | + | chr8_4:53013171-53013190 | None:intergenic | 65.0% | |
| CGGCGATGCGGGAATGTTGG+AGG | + | chr8_4:53013205-53013224 | None:intergenic | 65.0% | |
| AACTCATCGCCGTCGCCGTC+GGG | - | chr8_4:53013359-53013378 | Msa1333000:CDS | 65.0% | |
| AACGCTGGTGGTTCGCCGGC+CGG | - | chr8_4:53010827-53010846 | Msa1333000:intron | 70.0% | |
| CGGTTTCCCCGACGGGAGAG+AGG | + | chr8_4:53013163-53013182 | None:intergenic | 70.0% | |
| ! | TGTCGGGGTGACGGCGATGC+GGG | + | chr8_4:53013216-53013235 | None:intergenic | 70.0% |
| ! | GTGTCGGGGTGACGGCGATG+CGG | + | chr8_4:53013217-53013236 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 53010498 | 53013701 | 53010498 | ID=Msa1333000;Name=Msa1333000 |
| chr8_4 | mRNA | 53010498 | 53013701 | 53010498 | ID=Msa1333000-mRNA-1;Parent=Msa1333000;Name=Msa1333000-mRNA-1;_AED=0.15;_eAED=0.15;_QI=72|0|0.33|0.66|0|0.66|3|0|242 |
| chr8_4 | exon | 53010498 | 53010592 | 53010498 | ID=Msa1333000-mRNA-1:exon:16138;Parent=Msa1333000-mRNA-1 |
| chr8_4 | exon | 53011448 | 53011550 | 53011448 | ID=Msa1333000-mRNA-1:exon:16137;Parent=Msa1333000-mRNA-1 |
| chr8_4 | exon | 53013099 | 53013701 | 53013099 | ID=Msa1333000-mRNA-1:exon:16136;Parent=Msa1333000-mRNA-1 |
| chr8_4 | five_prime_UTR | 53013630 | 53013701 | 53013630 | ID=Msa1333000-mRNA-1:five_prime_utr;Parent=Msa1333000-mRNA-1 |
| chr8_4 | CDS | 53013099 | 53013629 | 53013099 | ID=Msa1333000-mRNA-1:cds;Parent=Msa1333000-mRNA-1 |
| chr8_4 | CDS | 53011448 | 53011550 | 53011448 | ID=Msa1333000-mRNA-1:cds;Parent=Msa1333000-mRNA-1 |
| chr8_4 | CDS | 53010498 | 53010592 | 53010498 | ID=Msa1333000-mRNA-1:cds;Parent=Msa1333000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
