AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098800 MtrunA17_Chr1g0151461 95.410 305 11 2 1 302 1 305 0.0 594
Msa0098800 MtrunA17_Chr4g0071301 45.872 109 38 4 105 213 134 221 6.59e-17 79.7
Msa0098800 MtrunA17_Chr4g0068031 62.500 48 18 0 181 228 27 74 5.72e-16 73.6
Msa0098800 MtrunA17_Chr2g0299081 45.985 137 46 5 182 300 167 293 1.03e-15 76.3
Msa0098800 MtrunA17_Chr7g0271861 69.444 36 11 0 184 219 22 57 6.22e-13 64.7
Msa0098800 MtrunA17_Chr5g0404131 50.000 66 27 1 161 220 163 228 1.72e-12 66.6
Msa0098800 MtrunA17_Chr8g0373231 63.158 38 14 0 183 220 124 161 7.35e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098800 AT5G56860.1 40.909 132 49 6 105 217 142 263 2.11e-18 85.1
Msa0098800 AT5G49300.1 66.667 45 15 0 180 224 32 76 5.13e-17 76.6
Msa0098800 AT5G26930.1 66.667 42 14 0 180 221 22 63 9.52e-16 72.8
Msa0098800 AT4G26150.1 40.541 111 39 3 105 215 147 230 1.31e-15 76.6
Msa0098800 AT3G06740.1 66.667 42 14 0 181 222 38 79 1.71e-14 70.1
Msa0098800 AT4G16141.1 68.293 41 13 0 181 221 34 74 3.14e-14 70.5
Msa0098800 AT3G16870.1 57.143 56 20 1 181 236 39 90 5.02e-14 69.7
Msa0098800 AT4G36620.1 58.333 48 20 0 180 227 71 118 2.27e-12 65.5
Msa0098800 AT2G18380.1 64.286 42 14 1 184 224 92 133 4.50e-12 64.7
Msa0098800 AT5G25830.1 55.556 45 20 0 175 219 210 254 3.23e-11 63.5
Msa0098800 AT3G50870.1 58.696 46 18 1 183 227 151 196 4.33e-11 62.8
Msa0098800 AT1G08010.2 56.000 50 21 1 170 219 207 255 7.78e-11 62.4
Msa0098800 AT1G08010.1 56.000 50 21 1 170 219 207 255 7.78e-11 62.4
Msa0098800 AT1G08010.3 56.000 50 21 1 170 219 207 255 7.78e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGTTTGGTCTCATTAT+TGG 0.223553 1_3:-4837836 None:intergenic
CAGGAGAAATATTGAAGAAT+TGG 0.252897 1_3:-4836844 None:intergenic
CCTACCTTCTTTAACTTACT+TGG 0.262128 1_3:+4836881 Msa0098800:CDS
CAATATTTCTCCTGTTAATC+AGG 0.271245 1_3:+4836853 Msa0098800:CDS
TGACCTTGTAGTAAGGAATT+AGG 0.293931 1_3:-4836818 None:intergenic
TGTTACTACTAGGGCTTGTT+TGG 0.323214 1_3:-4837958 None:intergenic
ATGATGAGACCTAGTAATTA+TGG 0.329839 1_3:+4837902 Msa0098800:CDS
TTGTTACCGCTGTTACTACT+AGG 0.336848 1_3:-4837968 None:intergenic
GTCCAAGAAGTCAAAATATA+AGG 0.340331 1_3:+4837930 Msa0098800:CDS
TTTGCAATGCTTGTGGAATC+AGG 0.357272 1_3:+4838646 Msa0098800:CDS
TTTAACTTACTTGGAGACTT+TGG 0.370727 1_3:+4836890 Msa0098800:CDS
TCATCATAATCATAATCTAA+TGG 0.373491 1_3:-4838858 None:intergenic
CACTCCTCCAAAGTGGGGTA+TGG 0.383367 1_3:-4838024 None:intergenic
GTAGGAGTGTCCTGATTAAC+AGG 0.392974 1_3:-4836863 None:intergenic
CACAAATTTATCATCATCCT+TGG 0.395360 1_3:+4837703 Msa0098800:CDS
AGCAACGGCGGCACGACTTC+TGG 0.401059 1_3:+4838884 Msa0098800:CDS
CCTGGTGGATTCAGAGAAAC+AGG 0.414838 1_3:-4836794 None:intergenic
GTGGCTGCAATATTGTTGTT+TGG 0.421269 1_3:-4837848 None:intergenic
GGCTGAAGCTGCCAATGGTT+TGG 0.422143 1_3:+4838692 Msa0098800:CDS
TTCATCAAGTGAGTCAGTTA+TGG 0.431248 1_3:+4837658 Msa0098800:CDS
CTTTGGAGGAGTGGCCCTAT+GGG 0.439971 1_3:+4838034 Msa0098800:CDS
ACTTTGGAGGAGTGGCCCTA+TGG 0.441269 1_3:+4838033 Msa0098800:CDS
TTGATGAATTATAGAGTTGT+TGG 0.441916 1_3:-4837643 None:intergenic
CGAATTACCTTTGGACCCAT+AGG 0.444966 1_3:-4838049 None:intergenic
TGAGTCACGGGTCTGAGAAA+TGG 0.451328 1_3:+4837750 Msa0098800:CDS
CTTCTGGTGGATATATCTTC+TGG 0.451597 1_3:+4838900 Msa0098800:CDS
ACAGCGGTAACAACACCGTT+AGG 0.456940 1_3:+4837978 Msa0098800:CDS
TTTATCATCATCCTTGGAGC+TGG 0.479939 1_3:+4837709 Msa0098800:CDS
CTTGATAGCTTTGTCAGTAG+TGG 0.482210 1_3:-4837867 None:intergenic
AGAAAATCATGATCATCATC+AGG 0.482702 1_3:+4836913 Msa0098800:CDS
ACTCCTCCAAAGTGGGGTAT+GGG 0.495268 1_3:-4838023 None:intergenic
TTCTTAGTCTTGAATTGTGT+AGG 0.495944 1_3:-4838753 None:intergenic
TAATTACTAGGTCTCATCAT+TGG 0.503467 1_3:-4837899 None:intergenic
GCTGCTATCTTCCAGCTCCA+AGG 0.513483 1_3:-4837720 None:intergenic
TGGTCTCATTATTGGAGTTG+TGG 0.515285 1_3:-4837828 None:intergenic
AAGCTGGCATTTCATCATGA+TGG 0.517666 1_3:+4837602 Msa0098800:CDS
TCAGGCAGAGAAAGGCAAGA+AGG 0.520139 1_3:+4838664 Msa0098800:CDS
ACAACTTCAACTACTTCTGC+TGG 0.524955 1_3:+4838798 Msa0098800:CDS
CAGGCAGAGAAAGGCAAGAA+GGG 0.526577 1_3:+4838665 Msa0098800:CDS
GAATTACCTTTGGACCCATA+GGG 0.528192 1_3:-4838048 None:intergenic
GTCTCCAAGTAAGTTAAAGA+AGG 0.532121 1_3:-4836885 None:intergenic
ATTACTTTAGGATCATAAGC+TGG 0.534318 1_3:+4837586 Msa0098800:intron
AGGGGATGTAGCCAAACCAT+TGG 0.539225 1_3:-4838703 None:intergenic
CCTGTTTCTCTGAATCCACC+AGG 0.540643 1_3:+4836794 Msa0098800:CDS
CAGTCACTTTGCAATGCTTG+TGG 0.543553 1_3:+4838639 Msa0098800:intron
CAGCGGTAACAACACCGTTA+GGG 0.546032 1_3:+4837979 Msa0098800:CDS
ACCATTGGCAGCTTCAGCCA+TGG 0.551217 1_3:-4838688 None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG 0.551715 1_3:+4838656 Msa0098800:CDS
GTACATCCCATACCCCACTT+TGG 0.556830 1_3:+4838017 Msa0098800:CDS
TGTTACCGCTGTTACTACTA+GGG 0.563428 1_3:-4837967 None:intergenic
TAGGGCCACTCCTCCAAAGT+GGG 0.565226 1_3:-4838030 None:intergenic
GGACTAGTACCATAATTACT+AGG 0.573336 1_3:-4837911 None:intergenic
ATTCAGAGAAACAGGAGTCA+TGG 0.574562 1_3:-4836786 None:intergenic
AGAAGTAGTTGAAGTTGTAG+AGG 0.579757 1_3:-4838793 None:intergenic
CCAAGTAAGTTAAAGAAGGT+AGG 0.580600 1_3:-4836881 None:intergenic
GAGAAAGGCAAGAAGGGCCA+TGG 0.585866 1_3:+4838671 Msa0098800:CDS
GAGTGGCCCTATGGGTCCAA+AGG 0.590272 1_3:+4838042 Msa0098800:CDS
CATCCCATACCCCACTTTGG+AGG 0.595750 1_3:+4838020 Msa0098800:CDS
GGTCCTAATTCCTTACTACA+AGG 0.608365 1_3:+4836815 Msa0098800:CDS
TGATTATGATGAAGCAGCAA+CGG 0.614524 1_3:+4838869 Msa0098800:CDS
CATACCCCACTTTGGAGGAG+TGG 0.615240 1_3:+4838025 Msa0098800:CDS
GCCATGGCTGAAGCTGCCAA+TGG 0.619219 1_3:+4838687 Msa0098800:CDS
AACGGCGGCACGACTTCTGG+TGG 0.640817 1_3:+4838887 Msa0098800:CDS
ACAATCAGAACAAACCCTAA+CGG 0.645452 1_3:-4837993 None:intergenic
AGTAAGGAATTAGGACCTGG+TGG 0.650702 1_3:-4836809 None:intergenic
ATAGGGCCACTCCTCCAAAG+TGG 0.665162 1_3:-4838031 None:intergenic
ACAATTCAAGACTAAGAACA+AGG 0.668290 1_3:+4838758 Msa0098800:CDS
TGTAGTAAGGAATTAGGACC+TGG 0.677396 1_3:-4836812 None:intergenic
AGGGCCACTCCTCCAAAGTG+GGG 0.692599 1_3:-4838029 None:intergenic
TTATGATGAAGCAGCAACGG+CGG 0.694941 1_3:+4838872 Msa0098800:CDS
ACAAGCCCTAGTAGTAACAG+CGG 0.724459 1_3:+4837962 Msa0098800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATATATTATTAAAACA+TGG - chr1_3:4837260-4837279 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + chr1_3:4837309-4837328 Msa0098800:intron 10.0%
!!! ATATCAATATATTTTTTTGA+GGG - chr1_3:4838202-4838221 None:intergenic 10.0%
!!! AATATCAATATATTTTTTTG+AGG - chr1_3:4838203-4838222 None:intergenic 10.0%
!! TGATAAAATATTTGTATTAA+AGG - chr1_3:4838304-4838323 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - chr1_3:4838401-4838420 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG - chr1_3:4838567-4838586 None:intergenic 10.0%
!! ATCTATATATTATTAAAACA+TGG - chr1_3:4837260-4837279 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + chr1_3:4837309-4837328 Msa0098800:intron 10.0%
!!! ATATCAATATATTTTTTTGA+GGG - chr1_3:4838202-4838221 None:intergenic 10.0%
!!! AATATCAATATATTTTTTTG+AGG - chr1_3:4838203-4838222 None:intergenic 10.0%
!! TGATAAAATATTTGTATTAA+AGG - chr1_3:4838304-4838323 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - chr1_3:4838401-4838420 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG - chr1_3:4838567-4838586 None:intergenic 10.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG - chr1_3:4837136-4837155 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG - chr1_3:4837137-4837156 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG - chr1_3:4837138-4837157 None:intergenic 15.0%
!! AATAATAACATATACATCAA+AGG - chr1_3:4837481-4837500 None:intergenic 15.0%
!!! GATATTAATAATTTTTGTGA+TGG - chr1_3:4838176-4838195 None:intergenic 15.0%
!!! TATCAATATATTTTTTTGAG+GGG - chr1_3:4838201-4838220 None:intergenic 15.0%
!! ATTGATATTTATTGTTCATA+AGG + chr1_3:4838214-4838233 Msa0098800:intron 15.0%
!! TTGATATTTATTGTTCATAA+GGG + chr1_3:4838215-4838234 Msa0098800:intron 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - chr1_3:4838270-4838289 None:intergenic 15.0%
!!! ATCTTTAAAAAAAACAAAAG+GGG - chr1_3:4837136-4837155 None:intergenic 15.0%
!!! CATCTTTAAAAAAAACAAAA+GGG - chr1_3:4837137-4837156 None:intergenic 15.0%
!!! ACATCTTTAAAAAAAACAAA+AGG - chr1_3:4837138-4837157 None:intergenic 15.0%
!! AATAATAACATATACATCAA+AGG - chr1_3:4837481-4837500 None:intergenic 15.0%
!!! GATATTAATAATTTTTGTGA+TGG - chr1_3:4838176-4838195 None:intergenic 15.0%
!!! TATCAATATATTTTTTTGAG+GGG - chr1_3:4838201-4838220 None:intergenic 15.0%
!! ATTGATATTTATTGTTCATA+AGG + chr1_3:4838214-4838233 Msa0098800:intron 15.0%
!! TTGATATTTATTGTTCATAA+GGG + chr1_3:4838215-4838234 Msa0098800:intron 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - chr1_3:4838270-4838289 None:intergenic 15.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - chr1_3:4836955-4836974 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - chr1_3:4836956-4836975 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG - chr1_3:4837335-4837354 None:intergenic 20.0%
!! AAAACATTATAGAAGAGAAA+AGG - chr1_3:4837380-4837399 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - chr1_3:4838295-4838314 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - chr1_3:4838861-4838880 None:intergenic 20.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - chr1_3:4836955-4836974 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - chr1_3:4836956-4836975 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG - chr1_3:4837335-4837354 None:intergenic 20.0%
!! AAAACATTATAGAAGAGAAA+AGG - chr1_3:4837380-4837399 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - chr1_3:4838295-4838314 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - chr1_3:4838861-4838880 None:intergenic 20.0%
! ACAAAACAACACAATTACTA+TGG - chr1_3:4837190-4837209 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + chr1_3:4837574-4837593 Msa0098800:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG - chr1_3:4837646-4837665 None:intergenic 25.0%
!!! TACCTTATATTTTGACTTCT+TGG - chr1_3:4837935-4837954 None:intergenic 25.0%
!! CGATAAACGTTAAATTTTAG+TGG - chr1_3:4838142-4838161 None:intergenic 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - chr1_3:4838397-4838416 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + chr1_3:4838614-4838633 Msa0098800:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - chr1_3:4838725-4838744 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - chr1_3:4838726-4838745 None:intergenic 25.0%
! ACAAAACAACACAATTACTA+TGG - chr1_3:4837190-4837209 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + chr1_3:4837574-4837593 Msa0098800:intron 25.0%
! TTGATGAATTATAGAGTTGT+TGG - chr1_3:4837646-4837665 None:intergenic 25.0%
!!! TACCTTATATTTTGACTTCT+TGG - chr1_3:4837935-4837954 None:intergenic 25.0%
!! CGATAAACGTTAAATTTTAG+TGG - chr1_3:4838142-4838161 None:intergenic 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - chr1_3:4838397-4838416 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + chr1_3:4838614-4838633 Msa0098800:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - chr1_3:4838725-4838744 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - chr1_3:4838726-4838745 None:intergenic 25.0%
CAGGAGAAATATTGAAGAAT+TGG - chr1_3:4836847-4836866 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG + chr1_3:4836853-4836872 Msa0098800:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG + chr1_3:4836890-4836909 Msa0098800:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + chr1_3:4836913-4836932 Msa0098800:CDS 30.0%
AAACAACACAATTACTATGG+TGG - chr1_3:4837187-4837206 None:intergenic 30.0%
! TTTTGTAACAAGAGAACGTT+TGG + chr1_3:4837204-4837223 Msa0098800:intron 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + chr1_3:4837586-4837605 Msa0098800:intron 30.0%
CACAAATTTATCATCATCCT+TGG + chr1_3:4837703-4837722 Msa0098800:CDS 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG - chr1_3:4837839-4837858 None:intergenic 30.0%
TAATTACTAGGTCTCATCAT+TGG - chr1_3:4837902-4837921 None:intergenic 30.0%
ATGATGAGACCTAGTAATTA+TGG + chr1_3:4837902-4837921 Msa0098800:CDS 30.0%
GTCCAAGAAGTCAAAATATA+AGG + chr1_3:4837930-4837949 Msa0098800:CDS 30.0%
AGAGTTTAACGAATTACCTT+TGG - chr1_3:4838061-4838080 None:intergenic 30.0%
TATGGACGAATAGTGAATAA+GGG - chr1_3:4838087-4838106 None:intergenic 30.0%
ATATGGACGAATAGTGAATA+AGG - chr1_3:4838088-4838107 None:intergenic 30.0%
ACTATTCGTCCATATTAAAG+TGG + chr1_3:4838093-4838112 Msa0098800:intron 30.0%
CTATTCGTCCATATTAAAGT+GGG + chr1_3:4838094-4838113 Msa0098800:intron 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - chr1_3:4838724-4838743 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - chr1_3:4838756-4838775 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + chr1_3:4838758-4838777 Msa0098800:CDS 30.0%
CAGGAGAAATATTGAAGAAT+TGG - chr1_3:4836847-4836866 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG + chr1_3:4836853-4836872 Msa0098800:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG + chr1_3:4836890-4836909 Msa0098800:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + chr1_3:4836913-4836932 Msa0098800:CDS 30.0%
AAACAACACAATTACTATGG+TGG - chr1_3:4837187-4837206 None:intergenic 30.0%
! TTTTGTAACAAGAGAACGTT+TGG + chr1_3:4837204-4837223 Msa0098800:intron 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + chr1_3:4837586-4837605 Msa0098800:intron 30.0%
CACAAATTTATCATCATCCT+TGG + chr1_3:4837703-4837722 Msa0098800:CDS 30.0%
!! TTGTTGTTTGGTCTCATTAT+TGG - chr1_3:4837839-4837858 None:intergenic 30.0%
TAATTACTAGGTCTCATCAT+TGG - chr1_3:4837902-4837921 None:intergenic 30.0%
ATGATGAGACCTAGTAATTA+TGG + chr1_3:4837902-4837921 Msa0098800:CDS 30.0%
GTCCAAGAAGTCAAAATATA+AGG + chr1_3:4837930-4837949 Msa0098800:CDS 30.0%
AGAGTTTAACGAATTACCTT+TGG - chr1_3:4838061-4838080 None:intergenic 30.0%
TATGGACGAATAGTGAATAA+GGG - chr1_3:4838087-4838106 None:intergenic 30.0%
ATATGGACGAATAGTGAATA+AGG - chr1_3:4838088-4838107 None:intergenic 30.0%
ACTATTCGTCCATATTAAAG+TGG + chr1_3:4838093-4838112 Msa0098800:intron 30.0%
CTATTCGTCCATATTAAAGT+GGG + chr1_3:4838094-4838113 Msa0098800:intron 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - chr1_3:4838724-4838743 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - chr1_3:4838756-4838775 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + chr1_3:4838758-4838777 Msa0098800:CDS 30.0%
TGACCTTGTAGTAAGGAATT+AGG - chr1_3:4836821-4836840 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - chr1_3:4836828-4836847 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG - chr1_3:4836884-4836903 None:intergenic 35.0%
! CCTACCTTCTTTAACTTACT+TGG + chr1_3:4836881-4836900 Msa0098800:CDS 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - chr1_3:4836888-4836907 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + chr1_3:4837658-4837677 Msa0098800:CDS 35.0%
! GGACTAGTACCATAATTACT+AGG - chr1_3:4837914-4837933 None:intergenic 35.0%
ACAATCAGAACAAACCCTAA+CGG - chr1_3:4837996-4838015 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - chr1_3:4838796-4838815 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + chr1_3:4838869-4838888 Msa0098800:CDS 35.0%
TGACCTTGTAGTAAGGAATT+AGG - chr1_3:4836821-4836840 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - chr1_3:4836828-4836847 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG - chr1_3:4836884-4836903 None:intergenic 35.0%
! CCTACCTTCTTTAACTTACT+TGG + chr1_3:4836881-4836900 Msa0098800:CDS 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - chr1_3:4836888-4836907 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + chr1_3:4837658-4837677 Msa0098800:CDS 35.0%
! GGACTAGTACCATAATTACT+AGG - chr1_3:4837914-4837933 None:intergenic 35.0%
ACAATCAGAACAAACCCTAA+CGG - chr1_3:4837996-4838015 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - chr1_3:4838796-4838815 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + chr1_3:4838869-4838888 Msa0098800:CDS 35.0%
TGTAGTAAGGAATTAGGACC+TGG - chr1_3:4836815-4836834 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + chr1_3:4836815-4836834 Msa0098800:CDS 40.0%
TGTAACAAGAGAACGTTTGG+TGG + chr1_3:4837207-4837226 Msa0098800:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG + chr1_3:4837602-4837621 Msa0098800:CDS 40.0%
TTTATCATCATCCTTGGAGC+TGG + chr1_3:4837709-4837728 Msa0098800:CDS 40.0%
AGCAGCAAAAAGATGAGTCA+CGG + chr1_3:4837737-4837756 Msa0098800:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG - chr1_3:4837831-4837850 None:intergenic 40.0%
! GTGGCTGCAATATTGTTGTT+TGG - chr1_3:4837851-4837870 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG - chr1_3:4837870-4837889 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - chr1_3:4837961-4837980 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - chr1_3:4837970-4837989 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - chr1_3:4837971-4837990 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - chr1_3:4838051-4838070 None:intergenic 40.0%
TCCATATTAAAGTGGGAGAG+TGG + chr1_3:4838101-4838120 Msa0098800:intron 40.0%
TTTGCAATGCTTGTGGAATC+AGG + chr1_3:4838646-4838665 Msa0098800:CDS 40.0%
ACAACTTCAACTACTTCTGC+TGG + chr1_3:4838798-4838817 Msa0098800:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + chr1_3:4838900-4838919 Msa0098800:CDS 40.0%
TGTAGTAAGGAATTAGGACC+TGG - chr1_3:4836815-4836834 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + chr1_3:4836815-4836834 Msa0098800:CDS 40.0%
TGTAACAAGAGAACGTTTGG+TGG + chr1_3:4837207-4837226 Msa0098800:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG + chr1_3:4837602-4837621 Msa0098800:CDS 40.0%
TTTATCATCATCCTTGGAGC+TGG + chr1_3:4837709-4837728 Msa0098800:CDS 40.0%
AGCAGCAAAAAGATGAGTCA+CGG + chr1_3:4837737-4837756 Msa0098800:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG - chr1_3:4837831-4837850 None:intergenic 40.0%
! GTGGCTGCAATATTGTTGTT+TGG - chr1_3:4837851-4837870 None:intergenic 40.0%
!! CTTGATAGCTTTGTCAGTAG+TGG - chr1_3:4837870-4837889 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - chr1_3:4837961-4837980 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - chr1_3:4837970-4837989 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - chr1_3:4837971-4837990 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - chr1_3:4838051-4838070 None:intergenic 40.0%
TCCATATTAAAGTGGGAGAG+TGG + chr1_3:4838101-4838120 Msa0098800:intron 40.0%
TTTGCAATGCTTGTGGAATC+AGG + chr1_3:4838646-4838665 Msa0098800:CDS 40.0%
ACAACTTCAACTACTTCTGC+TGG + chr1_3:4838798-4838817 Msa0098800:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + chr1_3:4838900-4838919 Msa0098800:CDS 40.0%
AGTAAGGAATTAGGACCTGG+TGG - chr1_3:4836812-4836831 None:intergenic 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG - chr1_3:4836866-4836885 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG + chr1_3:4837738-4837757 Msa0098800:CDS 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + chr1_3:4837962-4837981 Msa0098800:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG - chr1_3:4838052-4838071 None:intergenic 45.0%
GCCACTCTCCCACTTTAATA+TGG - chr1_3:4838105-4838124 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + chr1_3:4838639-4838658 Msa0098800:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + chr1_3:4838656-4838675 Msa0098800:CDS 45.0%
TTATGATGAAGCAGCAACGG+CGG + chr1_3:4838872-4838891 Msa0098800:CDS 45.0%
AGTAAGGAATTAGGACCTGG+TGG - chr1_3:4836812-4836831 None:intergenic 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG - chr1_3:4836866-4836885 None:intergenic 45.0%
GCAGCAAAAAGATGAGTCAC+GGG + chr1_3:4837738-4837757 Msa0098800:CDS 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + chr1_3:4837962-4837981 Msa0098800:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG - chr1_3:4838052-4838071 None:intergenic 45.0%
GCCACTCTCCCACTTTAATA+TGG - chr1_3:4838105-4838124 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + chr1_3:4838639-4838658 Msa0098800:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + chr1_3:4838656-4838675 Msa0098800:CDS 45.0%
TTATGATGAAGCAGCAACGG+CGG + chr1_3:4838872-4838891 Msa0098800:CDS 45.0%
!!! TAATTTTTATTATTATATCA+CGG + chr1_3:4838487-4838506 Msa0098800:intron 5.0%
!!! TAATTTTTATTATTATATCA+CGG + chr1_3:4838487-4838506 Msa0098800:intron 5.0%
!! CCTGGTGGATTCAGAGAAAC+AGG - chr1_3:4836797-4836816 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG + chr1_3:4836794-4836813 Msa0098800:CDS 50.0%
TGAGTCACGGGTCTGAGAAA+TGG + chr1_3:4837750-4837769 Msa0098800:CDS 50.0%
ACAGCGGTAACAACACCGTT+AGG + chr1_3:4837978-4837997 Msa0098800:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG + chr1_3:4837979-4837998 Msa0098800:CDS 50.0%
GTACATCCCATACCCCACTT+TGG + chr1_3:4838017-4838036 Msa0098800:CDS 50.0%
ACTCCTCCAAAGTGGGGTAT+GGG - chr1_3:4838026-4838045 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + chr1_3:4838664-4838683 Msa0098800:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + chr1_3:4838665-4838684 Msa0098800:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - chr1_3:4838706-4838725 None:intergenic 50.0%
!! CCTGGTGGATTCAGAGAAAC+AGG - chr1_3:4836797-4836816 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG + chr1_3:4836794-4836813 Msa0098800:CDS 50.0%
TGAGTCACGGGTCTGAGAAA+TGG + chr1_3:4837750-4837769 Msa0098800:CDS 50.0%
ACAGCGGTAACAACACCGTT+AGG + chr1_3:4837978-4837997 Msa0098800:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG + chr1_3:4837979-4837998 Msa0098800:CDS 50.0%
GTACATCCCATACCCCACTT+TGG + chr1_3:4838017-4838036 Msa0098800:CDS 50.0%
ACTCCTCCAAAGTGGGGTAT+GGG - chr1_3:4838026-4838045 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + chr1_3:4838664-4838683 Msa0098800:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + chr1_3:4838665-4838684 Msa0098800:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - chr1_3:4838706-4838725 None:intergenic 50.0%
GCTGCTATCTTCCAGCTCCA+AGG - chr1_3:4837723-4837742 None:intergenic 55.0%
CATCCCATACCCCACTTTGG+AGG + chr1_3:4838020-4838039 Msa0098800:CDS 55.0%
CACTCCTCCAAAGTGGGGTA+TGG - chr1_3:4838027-4838046 None:intergenic 55.0%
! CATACCCCACTTTGGAGGAG+TGG + chr1_3:4838025-4838044 Msa0098800:CDS 55.0%
TAGGGCCACTCCTCCAAAGT+GGG - chr1_3:4838033-4838052 None:intergenic 55.0%
ATAGGGCCACTCCTCCAAAG+TGG - chr1_3:4838034-4838053 None:intergenic 55.0%
! ACTTTGGAGGAGTGGCCCTA+TGG + chr1_3:4838033-4838052 Msa0098800:CDS 55.0%
! CTTTGGAGGAGTGGCCCTAT+GGG + chr1_3:4838034-4838053 Msa0098800:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + chr1_3:4838671-4838690 Msa0098800:CDS 55.0%
ACCATTGGCAGCTTCAGCCA+TGG - chr1_3:4838691-4838710 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + chr1_3:4838692-4838711 Msa0098800:CDS 55.0%
GCTGCTATCTTCCAGCTCCA+AGG - chr1_3:4837723-4837742 None:intergenic 55.0%
CATCCCATACCCCACTTTGG+AGG + chr1_3:4838020-4838039 Msa0098800:CDS 55.0%
CACTCCTCCAAAGTGGGGTA+TGG - chr1_3:4838027-4838046 None:intergenic 55.0%
! CATACCCCACTTTGGAGGAG+TGG + chr1_3:4838025-4838044 Msa0098800:CDS 55.0%
TAGGGCCACTCCTCCAAAGT+GGG - chr1_3:4838033-4838052 None:intergenic 55.0%
ATAGGGCCACTCCTCCAAAG+TGG - chr1_3:4838034-4838053 None:intergenic 55.0%
! ACTTTGGAGGAGTGGCCCTA+TGG + chr1_3:4838033-4838052 Msa0098800:CDS 55.0%
! CTTTGGAGGAGTGGCCCTAT+GGG + chr1_3:4838034-4838053 Msa0098800:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + chr1_3:4838671-4838690 Msa0098800:CDS 55.0%
ACCATTGGCAGCTTCAGCCA+TGG - chr1_3:4838691-4838710 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + chr1_3:4838692-4838711 Msa0098800:CDS 55.0%
AGGGCCACTCCTCCAAAGTG+GGG - chr1_3:4838032-4838051 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + chr1_3:4838042-4838061 Msa0098800:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + chr1_3:4838687-4838706 Msa0098800:CDS 60.0%
AGGGCCACTCCTCCAAAGTG+GGG - chr1_3:4838032-4838051 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + chr1_3:4838042-4838061 Msa0098800:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + chr1_3:4838687-4838706 Msa0098800:CDS 60.0%
AGCAACGGCGGCACGACTTC+TGG + chr1_3:4838884-4838903 Msa0098800:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG + chr1_3:4838887-4838906 Msa0098800:CDS 65.0%
AGCAACGGCGGCACGACTTC+TGG + chr1_3:4838884-4838903 Msa0098800:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG + chr1_3:4838887-4838906 Msa0098800:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4836788 4838935 4836788 ID=Msa0098800;Name=Msa0098800
chr1_3 mRNA 4836788 4838935 4836788 ID=Msa0098800-mRNA-1;Parent=Msa0098800;Name=Msa0098800-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|302
chr1_3 exon 4836788 4836934 4836788 ID=Msa0098800-mRNA-1:exon:1701;Parent=Msa0098800-mRNA-1
chr1_3 exon 4837596 4838063 4837596 ID=Msa0098800-mRNA-1:exon:1702;Parent=Msa0098800-mRNA-1
chr1_3 exon 4838642 4838935 4838642 ID=Msa0098800-mRNA-1:exon:1703;Parent=Msa0098800-mRNA-1
chr1_3 CDS 4836788 4836934 4836788 ID=Msa0098800-mRNA-1:cds;Parent=Msa0098800-mRNA-1
chr1_3 CDS 4837596 4838063 4837596 ID=Msa0098800-mRNA-1:cds;Parent=Msa0098800-mRNA-1
chr1_3 CDS 4838642 4838935 4838642 ID=Msa0098800-mRNA-1:cds;Parent=Msa0098800-mRNA-1
Gene Sequence

>Msa0098800

ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCTACCTTCTTTAACTTACTTGGAGACTTTGGAGAAAATCATGATCATCATCAGGATCATAAGCTGGCATTTCATCATGATGGATCATCATCAAGCAATCACCAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATGAGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAAGTTGATGAATAAAATGATCAACACAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAATATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGACCTAGTAATTATGGTACTAGTCCAAGAAGTCAAAATATAAGGTACAGCCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTACTGA

Protein sequence

>Msa0098800

MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENHDHHQDHKLAFHHDGSSSSNHQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKMSHGSEKWMSSKMKLMNKMINTTATVATTPIMRPNNNIAATTDKAIKTTTPMMRPSNYGTSPRSQNIRYSQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY*