AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295220 MtrunA17_Chr8g0360741 89.041 146 13 1 6 148 58 203 1.18e-81 251
Msa1295220 MtrunA17_Chr8g0360741 68.750 160 24 3 147 280 2 161 7.30e-62 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295220 AT5G54290.1 54.225 142 47 3 23 148 34 173 1.09e-33 126
Msa1295220 AT5G54290.2 54.225 142 47 3 23 148 35 174 1.23e-33 126

Find 65 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGTTTGGCTGTAATTTA+TGG 0.138835 8_3:+53239315 Msa1295220:intron
CTATGTTTCGTTGCTTAATT+TGG 0.149345 8_3:-53240217 None:intergenic
TATAATATGGCAGGGGCTTT+TGG 0.205217 8_3:+53239475 Msa1295220:intron
TATAATATGGCAGGGGCTTT+TGG 0.205217 8_3:+53241436 Msa1295220:intron
GCAGTTTGGCTGTAATTTAT+GGG 0.315183 8_3:+53239316 Msa1295220:intron
ACTCAACTTAACCCGATTCA+TGG 0.345101 8_3:+53240367 Msa1295220:CDS
CTGATGGAGGCCTCGGTGAC+TGG 0.350606 8_3:+53241098 Msa1295220:CDS
AATAGTATTATGACATTCAT+TGG 0.361793 8_3:+53238725 Msa1295220:CDS
AATAGTATTATGACATTCAT+TGG 0.361793 8_3:+53240720 Msa1295220:CDS
ACAGGCCAATGAAGCAGTTC+TGG 0.364928 8_3:+53239168 Msa1295220:CDS
ACAGGCCAATGAAGCAGTTC+TGG 0.364928 8_3:+53241150 Msa1295220:CDS
TTGGTCCAGAACTGCTTCAT+TGG 0.383991 8_3:-53239173 None:intergenic
TTGGTCCAGAACTGCTTCAT+TGG 0.383991 8_3:-53241155 None:intergenic
ACTCAACTCAACCCGATTCA+TGG 0.401431 8_3:+53238376 Msa1295220:CDS
TTTGTATGGTTACCATGAAT+CGG 0.407681 8_3:-53238388 None:intergenic
TTTGTATGGTTACCATGAAT+CGG 0.407681 8_3:-53240379 None:intergenic
GGAGGCCTCGGTGACTGGTT+TGG 0.419929 8_3:+53241103 Msa1295220:CDS
GGAGGCATCGGTGACTGGTT+TGG 0.422411 8_3:+53239121 Msa1295220:CDS
ACACGGAACGGAACAGAAGA+AGG 0.427031 8_3:-53238295 None:intergenic
TGCTTCATTGGCCTGTTGTC+CGG 0.430538 8_3:-53239161 None:intergenic
TTGTATGGTTACCATGAATC+GGG 0.454052 8_3:-53238387 None:intergenic
GTTTCGTTGCTTAATTTGGA+TGG 0.454949 8_3:-53240213 None:intergenic
TTGTATGGTTACCATGAATC+GGG 0.456072 8_3:-53240378 None:intergenic
CAACTCAACTCAACTCAAGT+TGG 0.465907 8_3:+53238259 Msa1295220:five_prime_UTR
ACATTCATTGGTGGATTCAC+AGG 0.469988 8_3:+53238737 Msa1295220:CDS
ACATTCATTGGTGGATTCAC+AGG 0.469988 8_3:+53240732 Msa1295220:CDS
CTGAACATGAAAATTGTCTT+CGG 0.471865 8_3:+53238681 Msa1295220:CDS
CTGAACATGAAAATTGTCTT+CGG 0.471865 8_3:+53240676 Msa1295220:CDS
CTGATGGAGGCATCGGTGAC+TGG 0.471880 8_3:+53239116 Msa1295220:CDS
CGGTTGAAGTCGAAGATCAA+TGG 0.491192 8_3:+53238701 Msa1295220:CDS
CGGTTGAAGTCGAAGATCAA+TGG 0.491192 8_3:+53240696 Msa1295220:CDS
CGGTAACACACTAAGCGTAC+AGG 0.494081 8_3:-53239364 None:intergenic
CACTAAGCGTACAGGGAGAA+AGG 0.494224 8_3:-53239356 None:intergenic
ACTTTGGCTGATGGAGGCCT+CGG 0.495926 8_3:+53241091 Msa1295220:CDS
ACCTACACTTTCCTAATCAA+TGG 0.499685 8_3:-53241617 None:intergenic
GGCCTCGGTGACTGGTTTGG+AGG 0.500114 8_3:+53241106 Msa1295220:CDS
AGTGCACCTAGTAAAACTTA+AGG 0.500359 8_3:-53241185 None:intergenic
TTGGCTGTAATTTATGGGGC+AGG 0.501817 8_3:+53239321 Msa1295220:CDS
CAACTCAACTCAACTCAAGT+TGG 0.502177 8_3:+53240250 Msa1295220:CDS
CCAATGTAACCGAGAGTTAG+CGG 0.511934 8_3:-53239384 None:intergenic
AGTGCACCTAGTGAAACTTA+AGG 0.525530 8_3:-53239203 None:intergenic
ATCTCAATTCGAACACGGAA+CGG 0.529188 8_3:-53238307 None:intergenic
ATCTCAATTCGAACACGGAA+CGG 0.529188 8_3:-53240298 None:intergenic
CAGTTTGGCTGTAATTTATG+GGG 0.539826 8_3:+53239317 Msa1295220:intron
ACACGGAACGGAATAGAAGA+AGG 0.540464 8_3:-53240286 None:intergenic
TGAAACTTAAGGAGGATAGT+TGG 0.542202 8_3:-53239192 None:intergenic
CCGCTAACTCTCGGTTACAT+TGG 0.544941 8_3:+53239384 Msa1295220:CDS
ACTTTGGCTGATGGAGGCAT+CGG 0.545892 8_3:+53239109 Msa1295220:CDS
TAAAACTTAAGGACGATAGT+TGG 0.546369 8_3:-53241174 None:intergenic
GGCATCGGTGACTGGTTTGG+AGG 0.548333 8_3:+53239124 Msa1295220:CDS
AGTATTATGACATTCATTGG+TGG 0.549190 8_3:+53238728 Msa1295220:CDS
AGTATTATGACATTCATTGG+TGG 0.549190 8_3:+53240723 Msa1295220:CDS
AAGCGTACAGGGAGAAAGGC+TGG 0.557765 8_3:-53239352 None:intergenic
AGTGTGTTACCGCTAACTCT+CGG 0.572351 8_3:+53239375 Msa1295220:CDS
TATCCTCCTTAAGTTTCACT+AGG 0.587221 8_3:+53239197 Msa1295220:CDS
GGTAACACACTAAGCGTACA+GGG 0.590535 8_3:-53239363 None:intergenic
CACGGAACGGAACAGAAGAA+GGG 0.591499 8_3:-53238294 None:intergenic
AGTTGAGTTGAGTTGAGTTG+TGG 0.599189 8_3:-53238251 None:intergenic
ACTTGAGTTGAGTTGAGTTG+TGG 0.599189 8_3:-53240247 None:intergenic
AACTCATCTCAATTCGAACA+CGG 0.617015 8_3:-53238312 None:intergenic
CACGGAACGGAATAGAAGAA+GGG 0.618082 8_3:-53240285 None:intergenic
TGAGTTGAGTTGAGTTGTGG+CGG 0.620695 8_3:-53238248 None:intergenic
TGAGTTGAGTTGAGTTGTGG+CGG 0.682508 8_3:-53240244 None:intergenic
GCACCTAGTGAAACTTAAGG+AGG 0.685235 8_3:-53239200 None:intergenic
TGCCTCCAAACCAGTCACCG+AGG 0.720117 8_3:-53241108 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTTTTGGTTAT+AGG + chr8_3:53238626-53238645 Msa1295220:intron 10.0%
!! TTTCCTTAAAAAAAAAAAAA+AGG + chr8_3:53240166-53240185 Msa1295220:intron 10.0%
!!! TTTCCTTTTTTTTTTTTTTA+AGG - chr8_3:53240172-53240191 None:intergenic 10.0%
!!! TTTAATTTTTTTTTGGTTAT+AGG + chr8_3:53238626-53238645 Msa1295220:intron 10.0%
!!! ATTTATTTGAGCTTATTTTA+CGG - chr8_3:53238573-53238592 None:intergenic 15.0%
!! AAAAATTAAAAAAATCTCCA+AGG - chr8_3:53238616-53238635 None:intergenic 15.0%
!! AAACAAATAAAAAGAAACAT+TGG - chr8_3:53239005-53239024 None:intergenic 15.0%
!!! CTTTTTATTTGTTTATTTTC+CGG + chr8_3:53239011-53239030 Msa1295220:intron 15.0%
!! AATCTAAATCTGTTATAATA+TGG + chr8_3:53239462-53239481 Msa1295220:intron 15.0%
!! ATAAGAAGAATAATATCATA+TGG - chr8_3:53239548-53239567 None:intergenic 15.0%
!!! ATTTATTTGAGCTTATTTTA+CGG - chr8_3:53238573-53238592 None:intergenic 15.0%
!! AAAAATTAAAAAAATCTCCA+AGG - chr8_3:53238616-53238635 None:intergenic 15.0%
!!! AAGAATTGTGTTTTTTAATT+AGG + chr8_3:53241048-53241067 Msa1295220:intron 15.0%
!! GAAATAGAAATAAAATCATT+CGG - chr8_3:53241221-53241240 None:intergenic 15.0%
!!! TTATAACAGATTTAGATTTT+AGG - chr8_3:53239460-53239479 None:intergenic 15.0%
!! AATCTAAATCTGTTATAATA+TGG + chr8_3:53239462-53239481 Msa1295220:intron 15.0%
!! ATAAGAAGAATAATATCATA+TGG - chr8_3:53239548-53239567 None:intergenic 15.0%
!! AATAGTATTATGACATTCAT+TGG + chr8_3:53238725-53238744 Msa1295220:CDS 20.0%
!!! TTTTTTTTTGTGTTACTGAT+TGG + chr8_3:53238829-53238848 Msa1295220:intron 20.0%
!!! AAGAATTGTGTTTTTTAATC+AGG + chr8_3:53239066-53239085 Msa1295220:intron 20.0%
!! AATGGTAGAAATAAATCATT+CGG - chr8_3:53239239-53239258 None:intergenic 20.0%
!! ATAATTGAAACTTGTGTTTA+TGG + chr8_3:53239266-53239285 Msa1295220:intron 20.0%
!!! TAGTCATTTTAAAACGTTTT+TGG - chr8_3:53239441-53239460 None:intergenic 20.0%
!!! TAATATCATATGGATTAACT+CGG - chr8_3:53239538-53239557 None:intergenic 20.0%
!!! CTTCTTATTATCCATTTTTA+TGG + chr8_3:53239560-53239579 Msa1295220:intron 20.0%
!! AGAAAATCAATCTTCAAATA+GGG - chr8_3:53239586-53239605 None:intergenic 20.0%
!! TCTTATTACTAATGTACTAA+GGG + chr8_3:53239605-53239624 Msa1295220:intron 20.0%
!! AATTTATATTCCGTGAAAAT+AGG - chr8_3:53239825-53239844 None:intergenic 20.0%
!! ATTCATACATGAAATGTTAT+TGG - chr8_3:53239881-53239900 None:intergenic 20.0%
!! AATAGTATTATGACATTCAT+TGG + chr8_3:53238725-53238744 Msa1295220:CDS 20.0%
!!! TTTATTTTTGTGTTACTGAT+TGG + chr8_3:53240823-53240842 Msa1295220:intron 20.0%
!! AAACAAATCAAAAGAAACAT+TGG - chr8_3:53240999-53241018 None:intergenic 20.0%
!!! TTTGATTTGTTTATTTTCTG+AGG + chr8_3:53241007-53241026 Msa1295220:intron 20.0%
!!! TGTGTTTTTTAATTAGGAAA+TGG + chr8_3:53241054-53241073 Msa1295220:intron 20.0%
!!! CTTCTTATTATCCATTTTTA+TGG + chr8_3:53239560-53239579 Msa1295220:intron 20.0%
!! AGAAAATCAATCTTCAAATA+GGG - chr8_3:53239586-53239605 None:intergenic 20.0%
!! ACTACATTAGTAATAAACAA+TGG - chr8_3:53241577-53241596 None:intergenic 20.0%
!! TGTTTATTACTAATGTAGTA+AGG + chr8_3:53241578-53241597 Msa1295220:intron 20.0%
!! GTTTATTACTAATGTAGTAA+GGG + chr8_3:53241579-53241598 Msa1295220:intron 20.0%
! AGTAAATTCACCAAATTGTT+TGG - chr8_3:53238424-53238443 None:intergenic 25.0%
! AAATAACTTCTTCTTATCCT+TGG + chr8_3:53238596-53238615 Msa1295220:intron 25.0%
!!! ATGTTCAGTAGTAACTTTTT+TGG - chr8_3:53238669-53238688 None:intergenic 25.0%
! TTTCATTCAAATTAACCACT+AGG - chr8_3:53238790-53238809 None:intergenic 25.0%
!!! TGTGTTTTTTAATCAGGAAA+TGG + chr8_3:53239072-53239091 Msa1295220:intron 25.0%
! GTTTCAATTATTAGCTGAAA+TGG - chr8_3:53239257-53239276 None:intergenic 25.0%
!!! TGTTGTTGTTTTACGTTTTT+CGG + chr8_3:53239413-53239432 Msa1295220:intron 25.0%
! TAAATCTGTTATAATATGGC+AGG + chr8_3:53239466-53239485 Msa1295220:intron 25.0%
! AAATCTGTTATAATATGGCA+GGG + chr8_3:53239467-53239486 Msa1295220:intron 25.0%
!! AATATCATATGGATTAACTC+GGG - chr8_3:53239537-53239556 None:intergenic 25.0%
! GAGAAAATCAATCTTCAAAT+AGG - chr8_3:53239587-53239606 None:intergenic 25.0%
! CTCTTATTACTAATGTACTA+AGG + chr8_3:53239604-53239623 Msa1295220:intron 25.0%
!! GTTTTCGACAAATTCTATTT+GGG + chr8_3:53239946-53239965 Msa1295220:intron 25.0%
! AAATAACTTCTTCTTATCCT+TGG + chr8_3:53238596-53238615 Msa1295220:intron 25.0%
!!! ATGTTCAGTAGTAACTTTTT+TGG - chr8_3:53238669-53238688 None:intergenic 25.0%
! TTTCATTCAAATTAACCACT+AGG - chr8_3:53238790-53238809 None:intergenic 25.0%
! GTAAGTTTAAATATCTCTGT+TGG + chr8_3:53240910-53240929 Msa1295220:intron 25.0%
! ATAGAAATAAAATCATTCGG+CGG - chr8_3:53241218-53241237 None:intergenic 25.0%
! CAATTTCAGCTAAATTGTTA+TGG + chr8_3:53241260-53241279 Msa1295220:intron 25.0%
!!! GTAATGCTGTTTTACATTTT+CGG + chr8_3:53241374-53241393 Msa1295220:intron 25.0%
! TAAATCTGTTATAATATGGC+AGG + chr8_3:53239466-53239485 Msa1295220:intron 25.0%
! AAATCTGTTATAATATGGCA+GGG + chr8_3:53239467-53239486 Msa1295220:intron 25.0%
!! AATATCATATGGATTAACTC+AGG - chr8_3:53239537-53239556 None:intergenic 25.0%
! GAGAAAATCAATCTTCAAAT+AGG - chr8_3:53239587-53239606 None:intergenic 25.0%
TTTGTATGGTTACCATGAAT+CGG - chr8_3:53238391-53238410 None:intergenic 30.0%
! TGCAGTTCAACTTTTCTTTT+AGG + chr8_3:53238482-53238501 Msa1295220:intron 30.0%
!!! TTCAGTAGTAACTTTTTTGG+TGG - chr8_3:53238666-53238685 None:intergenic 30.0%
CTGAACATGAAAATTGTCTT+CGG + chr8_3:53238681-53238700 Msa1295220:CDS 30.0%
AGTATTATGACATTCATTGG+TGG + chr8_3:53238728-53238747 Msa1295220:CDS 30.0%
! TCAATGTTTTCTTAACCTAG+TGG + chr8_3:53238772-53238791 Msa1295220:intron 30.0%
! AATATTTTCAGCTGCACAAT+TGG + chr8_3:53238870-53238889 Msa1295220:intron 30.0%
GTAAGTTTAAATGTCTCTGT+TGG + chr8_3:53238916-53238935 Msa1295220:intron 30.0%
GTAGAAGACATTAATGCAAA+AGG - chr8_3:53238967-53238986 None:intergenic 30.0%
TCTTATTCAACTTTGCAGTT+TGG + chr8_3:53239302-53239321 Msa1295220:intron 30.0%
AATCTGTTATAATATGGCAG+GGG + chr8_3:53239468-53239487 Msa1295220:intron 30.0%
TTCAAATAGGGCCATAAAAA+TGG - chr8_3:53239574-53239593 None:intergenic 30.0%
!! AGGTGAAAGGTACTAATATA+TGG + chr8_3:53239690-53239709 Msa1295220:intron 30.0%
ATGTCAAATGCTTAGATGTT+TGG + chr8_3:53239780-53239799 Msa1295220:intron 30.0%
! TTTTGTTAGCTGCATATTTG+AGG + chr8_3:53239843-53239862 Msa1295220:intron 30.0%
! ACATGAAATGTTATTGGTCT+TGG - chr8_3:53239875-53239894 None:intergenic 30.0%
! GGTTTTCGACAAATTCTATT+TGG + chr8_3:53239945-53239964 Msa1295220:intron 30.0%
CTATGTTTCGTTGCTTAATT+TGG - chr8_3:53240220-53240239 None:intergenic 30.0%
TTTGTATGGTTACCATGAAT+CGG - chr8_3:53238391-53238410 None:intergenic 30.0%
GAGTAAATTCAGCAATTGTT+AGG - chr8_3:53240420-53240439 None:intergenic 30.0%
!!! TTCAGTAGTAACTTTTTTGG+TGG - chr8_3:53238666-53238685 None:intergenic 30.0%
CTGAACATGAAAATTGTCTT+CGG + chr8_3:53238681-53238700 Msa1295220:CDS 30.0%
AGTATTATGACATTCATTGG+TGG + chr8_3:53238728-53238747 Msa1295220:CDS 30.0%
! TCAATGTTTTCTTAACCTAG+TGG + chr8_3:53238772-53238791 Msa1295220:intron 30.0%
! AATATTTTCAGCTGCACAAT+TGG + chr8_3:53238870-53238889 Msa1295220:intron 30.0%
!!! GTTTATTTTCTGAGGTAGTT+TGG + chr8_3:53241015-53241034 Msa1295220:intron 30.0%
TAAAACTTAAGGACGATAGT+TGG - chr8_3:53241177-53241196 None:intergenic 30.0%
! TATCGTCCTTAAGTTTTACT+AGG + chr8_3:53241179-53241198 Msa1295220:CDS 30.0%
ATTACGAGTAATCATAAGGA+TGG - chr8_3:53241338-53241357 None:intergenic 30.0%
CGAAATTACGAGTAATCATA+AGG - chr8_3:53241342-53241361 None:intergenic 30.0%
CGTAATTTCGTTAGTTACAT+TGG + chr8_3:53241352-53241371 Msa1295220:intron 30.0%
AATCTGTTATAATATGGCAG+GGG + chr8_3:53239468-53239487 Msa1295220:intron 30.0%
TTCAAATAGGGCCATAAAAA+TGG - chr8_3:53239574-53239593 None:intergenic 30.0%
!!! CTCAACTCAAGTTGGATTTT+TGG + chr8_3:53238267-53238286 Msa1295220:five_prime_UTR 35.0%
AACTCATCTCAATTCGAACA+CGG - chr8_3:53238315-53238334 None:intergenic 35.0%
TTGTATGGTTACCATGAATC+GGG - chr8_3:53238390-53238409 None:intergenic 35.0%
TTGGAAGATGTGAGTTTGTA+TGG - chr8_3:53238405-53238424 None:intergenic 35.0%
CTCACATCTTCCAAACAATT+TGG + chr8_3:53238411-53238430 Msa1295220:intron 35.0%
!! GTTTATTTTCCGGAGTAGTT+TGG + chr8_3:53239021-53239040 Msa1295220:intron 35.0%
TGAAACTTAAGGAGGATAGT+TGG - chr8_3:53239195-53239214 None:intergenic 35.0%
TATCCTCCTTAAGTTTCACT+AGG + chr8_3:53239197-53239216 Msa1295220:CDS 35.0%
GGTAGAAATAAATCATTCGG+CGG - chr8_3:53239236-53239255 None:intergenic 35.0%
TGCAGTTTGGCTGTAATTTA+TGG + chr8_3:53239315-53239334 Msa1295220:intron 35.0%
GCAGTTTGGCTGTAATTTAT+GGG + chr8_3:53239316-53239335 Msa1295220:intron 35.0%
CAGTTTGGCTGTAATTTATG+GGG + chr8_3:53239317-53239336 Msa1295220:intron 35.0%
!! AGTGTTCTAGGTTTTCACTT+AGG + chr8_3:53239670-53239689 Msa1295220:intron 35.0%
! TAGGTTTTCACTTAGGTGAA+AGG + chr8_3:53239677-53239696 Msa1295220:intron 35.0%
! CCTTCTACTTCCTATTTTCA+CGG + chr8_3:53239812-53239831 Msa1295220:intron 35.0%
!!! CACTTGTTGTTCTGTTTTCT+TGG + chr8_3:53239924-53239943 Msa1295220:intron 35.0%
! GTTTCGTTGCTTAATTTGGA+TGG - chr8_3:53240216-53240235 None:intergenic 35.0%
!!! CTCAACTCAAGTTGGATTTT+TGG + chr8_3:53238267-53238286 Msa1295220:five_prime_UTR 35.0%
AACTCATCTCAATTCGAACA+CGG - chr8_3:53238315-53238334 None:intergenic 35.0%
TTGTATGGTTACCATGAATC+GGG - chr8_3:53238390-53238409 None:intergenic 35.0%
AGATGAGATGTGAGTTTGTA+TGG - chr8_3:53240396-53240415 None:intergenic 35.0%
CCAGAAGACATTAATGCAAA+AGG - chr8_3:53240961-53240980 None:intergenic 35.0%
! CCTTTTGCATTAATGTCTTC+TGG + chr8_3:53238964-53238983 Msa1295220:intron 35.0%
AGTGCACCTAGTAAAACTTA+AGG - chr8_3:53241188-53241207 None:intergenic 35.0%
ATTACCAGATTGACTGTGTA+TGG + chr8_3:53241294-53241313 Msa1295220:intron 35.0%
TTACCAGATTGACTGTGTAT+GGG + chr8_3:53241295-53241314 Msa1295220:intron 35.0%
!! TAGGCTTTTGAAGACGTTTT+TGG - chr8_3:53241402-53241421 None:intergenic 35.0%
!! AGTTGAGTTGAGTTGAGTTG+TGG - chr8_3:53238254-53238273 None:intergenic 40.0%
CAACTCAACTCAACTCAAGT+TGG + chr8_3:53238259-53238278 Msa1295220:five_prime_UTR 40.0%
ATCTCAATTCGAACACGGAA+CGG - chr8_3:53238310-53238329 None:intergenic 40.0%
!! ACATTCATTGGTGGATTCAC+AGG + chr8_3:53238737-53238756 Msa1295220:CDS 40.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG + chr8_3:53239093-53239112 Msa1295220:CDS 40.0%
CCATCAGCCAAAGTAAAAAC+AGG - chr8_3:53239103-53239122 None:intergenic 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG + chr8_3:53239100-53239119 Msa1295220:CDS 40.0%
! GTTTTTACTTTGGCTGATGG+AGG + chr8_3:53239103-53239122 Msa1295220:CDS 40.0%
AGTGCACCTAGTGAAACTTA+AGG - chr8_3:53239206-53239225 None:intergenic 40.0%
! TATAATATGGCAGGGGCTTT+TGG + chr8_3:53239475-53239494 Msa1295220:intron 40.0%
GTCATTAGACACCATTGCTT+AGG + chr8_3:53239632-53239651 Msa1295220:intron 40.0%
! ACCATTGCTTAGGAAAGTGT+AGG + chr8_3:53239642-53239661 Msa1295220:intron 40.0%
ACCTACACTTTCCTAAGCAA+TGG - chr8_3:53239646-53239665 None:intergenic 40.0%
!! GTGTAGGTTTCTAGTGTTCT+AGG + chr8_3:53239658-53239677 Msa1295220:intron 40.0%
TAACCAGCGAATTGCTCTTT+AGG + chr8_3:53239723-53239742 Msa1295220:intron 40.0%
CCGTGAAAATAGGAAGTAGA+AGG - chr8_3:53239815-53239834 None:intergenic 40.0%
CTGTCTCTGTTATGTGTTTG+TGG - chr8_3:53239983-53240002 None:intergenic 40.0%
!! ACTTGAGTTGAGTTGAGTTG+TGG - chr8_3:53238259-53238278 None:intergenic 40.0%
CAACTCAACTCAACTCAAGT+TGG + chr8_3:53238259-53238278 Msa1295220:five_prime_UTR 40.0%
ATCTCAATTCGAACACGGAA+CGG - chr8_3:53238310-53238329 None:intergenic 40.0%
ACTCAACTTAACCCGATTCA+TGG + chr8_3:53240367-53240386 Msa1295220:CDS 40.0%
!! ACATTCATTGGTGGATTCAC+AGG + chr8_3:53238737-53238756 Msa1295220:CDS 40.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG + chr8_3:53239093-53239112 Msa1295220:CDS 40.0%
CCATCAGCCAAAGTAAAAAC+AGG - chr8_3:53239103-53239122 None:intergenic 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG + chr8_3:53239100-53239119 Msa1295220:CDS 40.0%
! GTTTTTACTTTGGCTGATGG+AGG + chr8_3:53239103-53239122 Msa1295220:CDS 40.0%
!!! TGGAGGCATTCTATTTTCAG+CGG + chr8_3:53239141-53239160 Msa1295220:CDS 40.0%
TACCAGATTGACTGTGTATG+GGG + chr8_3:53241296-53241315 Msa1295220:intron 40.0%
GTAATCATAAGGATGGTACG+TGG - chr8_3:53241331-53241350 None:intergenic 40.0%
! TATAATATGGCAGGGGCTTT+TGG + chr8_3:53239475-53239494 Msa1295220:intron 40.0%
!! TGAGTTGAGTTGAGTTGTGG+CGG - chr8_3:53238251-53238270 None:intergenic 45.0%
ACTCAACTCAACCCGATTCA+TGG + chr8_3:53238376-53238395 Msa1295220:CDS 45.0%
CGGTTGAAGTCGAAGATCAA+TGG + chr8_3:53238701-53238720 Msa1295220:CDS 45.0%
! CTTACAGCTTTTGCAGTGAC+TGG - chr8_3:53238901-53238920 None:intergenic 45.0%
TTTCCGGAGTAGTTTGGTCA+CGG + chr8_3:53239027-53239046 Msa1295220:intron 45.0%
ATACCGTGACCAAACTACTC+CGG - chr8_3:53239033-53239052 None:intergenic 45.0%
TTGGTCACGGTATAGTTCTC+AGG + chr8_3:53239040-53239059 Msa1295220:intron 45.0%
!!! GGAGGCATTCTATTTTCAGC+CGG + chr8_3:53239142-53239161 Msa1295220:CDS 45.0%
! TCTATTTTCAGCCGGACAAC+AGG + chr8_3:53239150-53239169 Msa1295220:CDS 45.0%
TTGGTCCAGAACTGCTTCAT+TGG - chr8_3:53239176-53239195 None:intergenic 45.0%
GCACCTAGTGAAACTTAAGG+AGG - chr8_3:53239203-53239222 None:intergenic 45.0%
TTGGCTGTAATTTATGGGGC+AGG + chr8_3:53239321-53239340 Msa1295220:CDS 45.0%
GGTAACACACTAAGCGTACA+GGG - chr8_3:53239366-53239385 None:intergenic 45.0%
AGTGTGTTACCGCTAACTCT+CGG + chr8_3:53239375-53239394 Msa1295220:CDS 45.0%
CCAATGTAACCGAGAGTTAG+CGG - chr8_3:53239387-53239406 None:intergenic 45.0%
TGTCCTAAAGAGCAATTCGC+TGG - chr8_3:53239729-53239748 None:intergenic 45.0%
!! TGAGTTGAGTTGAGTTGTGG+CGG - chr8_3:53238251-53238270 None:intergenic 45.0%
CACGGAACGGAATAGAAGAA+GGG - chr8_3:53240288-53240307 None:intergenic 45.0%
ACACGGAACGGAATAGAAGA+AGG - chr8_3:53240289-53240308 None:intergenic 45.0%
CGGTTGAAGTCGAAGATCAA+TGG + chr8_3:53238701-53238720 Msa1295220:CDS 45.0%
! CTTACAGCTTTTGCAGTGAC+TGG - chr8_3:53238901-53238920 None:intergenic 45.0%
!! TTCTGAGGTAGTTTGGTCTC+AGG + chr8_3:53241022-53241041 Msa1295220:intron 45.0%
!!! GGAGGCATTCTATTTTCAGC+GGG + chr8_3:53239142-53239161 Msa1295220:CDS 45.0%
! TCTATTTTCAGCGGGACAAC+AGG + chr8_3:53241132-53241151 Msa1295220:CDS 45.0%
TTGGTCCAGAACTGCTTCAT+TGG - chr8_3:53239176-53239195 None:intergenic 45.0%
!!! AGATTTTTTTAATTTTTTTT+TGG + chr8_3:53238619-53238638 Msa1295220:intron 5.0%
!!! AGATTTTTTTAATTTTTTTT+TGG + chr8_3:53238619-53238638 Msa1295220:intron 5.0%
CACGGAACGGAACAGAAGAA+GGG - chr8_3:53238297-53238316 None:intergenic 50.0%
ACACGGAACGGAACAGAAGA+AGG - chr8_3:53238298-53238317 None:intergenic 50.0%
! ACTTTGGCTGATGGAGGCAT+CGG + chr8_3:53239109-53239128 Msa1295220:CDS 50.0%
! TGCTTCATTGGCCTGTTGTC+CGG - chr8_3:53239164-53239183 None:intergenic 50.0%
ACAGGCCAATGAAGCAGTTC+TGG + chr8_3:53239168-53239187 Msa1295220:CDS 50.0%
CACTAAGCGTACAGGGAGAA+AGG - chr8_3:53239359-53239378 None:intergenic 50.0%
CGGTAACACACTAAGCGTAC+AGG - chr8_3:53239367-53239386 None:intergenic 50.0%
CCGCTAACTCTCGGTTACAT+TGG + chr8_3:53239384-53239403 Msa1295220:CDS 50.0%
! CTCTGGAAAAAGCAGAGCAC+AGG + chr8_3:53239498-53239517 Msa1295220:CDS 50.0%
ACAGGCCAATGAAGCAGTTC+TGG + chr8_3:53239168-53239187 Msa1295220:CDS 50.0%
CACCCCATACACAGTCAATC+TGG - chr8_3:53241301-53241320 None:intergenic 50.0%
! CTCTGGAAAAAGCAGAGCAC+AGG + chr8_3:53239498-53239517 Msa1295220:CDS 50.0%
AAGCGTACAGGGAGAAAGGC+TGG - chr8_3:53239355-53239374 None:intergenic 55.0%
ACTTTGGCTGATGGAGGCCT+CGG + chr8_3:53241091-53241110 Msa1295220:CDS 55.0%
!! CTGATGGAGGCATCGGTGAC+TGG + chr8_3:53239116-53239135 Msa1295220:CDS 60.0%
!! GGAGGCATCGGTGACTGGTT+TGG + chr8_3:53239121-53239140 Msa1295220:CDS 60.0%
!! GGCATCGGTGACTGGTTTGG+AGG + chr8_3:53239124-53239143 Msa1295220:CDS 60.0%
!!! ATGGCAGGGGCTTTTGGCTC+TGG + chr8_3:53239481-53239500 Msa1295220:intron 60.0%
TGCCTCCAAACCAGTCACCG+AGG - chr8_3:53239129-53239148 None:intergenic 60.0%
!!! ATGGCAGGGGCTTTTGGCTC+TGG + chr8_3:53239481-53239500 Msa1295220:intron 60.0%
CTGATGGAGGCCTCGGTGAC+TGG + chr8_3:53241098-53241117 Msa1295220:CDS 65.0%
! GGAGGCCTCGGTGACTGGTT+TGG + chr8_3:53241103-53241122 Msa1295220:CDS 65.0%
!! GGCCTCGGTGACTGGTTTGG+AGG + chr8_3:53241106-53241125 Msa1295220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 53238233 53241624 53238233 ID=Msa1295220;Name=Msa1295220
chr8_3 mRNA 53238233 53241624 53238233 ID=Msa1295220-mRNA-1;Parent=Msa1295220;Name=Msa1295220-mRNA-1;_AED=0.13;_eAED=0.19;_QI=95|0.33|0.23|1|0.41|0.46|13|0|301
chr8_3 exon 53238233 53238397 53238233 ID=Msa1295220-mRNA-1:exon:15246;Parent=Msa1295220-mRNA-1
chr8_3 exon 53238675 53238758 53238675 ID=Msa1295220-mRNA-1:exon:15247;Parent=Msa1295220-mRNA-1
chr8_3 exon 53238881 53238915 53238881 ID=Msa1295220-mRNA-1:exon:15248;Parent=Msa1295220-mRNA-1
chr8_3 exon 53239088 53239218 53239088 ID=Msa1295220-mRNA-1:exon:15249;Parent=Msa1295220-mRNA-1
chr8_3 exon 53239320 53239405 53239320 ID=Msa1295220-mRNA-1:exon:15250;Parent=Msa1295220-mRNA-1
chr8_3 exon 53239488 53239519 53239488 ID=Msa1295220-mRNA-1:exon:15251;Parent=Msa1295220-mRNA-1
chr8_3 exon 53240188 53240306 53240188 ID=Msa1295220-mRNA-1:exon:15252;Parent=Msa1295220-mRNA-1
chr8_3 exon 53240354 53240388 53240354 ID=Msa1295220-mRNA-1:exon:15253;Parent=Msa1295220-mRNA-1
chr8_3 exon 53240670 53240753 53240670 ID=Msa1295220-mRNA-1:exon:15254;Parent=Msa1295220-mRNA-1
chr8_3 exon 53240875 53240909 53240875 ID=Msa1295220-mRNA-1:exon:15255;Parent=Msa1295220-mRNA-1
chr8_3 exon 53241070 53241200 53241070 ID=Msa1295220-mRNA-1:exon:15256;Parent=Msa1295220-mRNA-1
chr8_3 exon 53241449 53241480 53241449 ID=Msa1295220-mRNA-1:exon:15257;Parent=Msa1295220-mRNA-1
chr8_3 exon 53241596 53241624 53241596 ID=Msa1295220-mRNA-1:exon:15258;Parent=Msa1295220-mRNA-1
chr8_3 five_prime_UTR 53238233 53238327 53238233 ID=Msa1295220-mRNA-1:five_prime_utr;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53238328 53238397 53238328 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53238675 53238758 53238675 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53238881 53238915 53238881 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53239088 53239218 53239088 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53239320 53239405 53239320 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53239488 53239519 53239488 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53240188 53240306 53240188 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53240354 53240388 53240354 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53240670 53240753 53240670 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53240875 53240909 53240875 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53241070 53241200 53241070 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53241449 53241480 53241449 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
chr8_3 CDS 53241596 53241624 53241596 ID=Msa1295220-mRNA-1:cds;Parent=Msa1295220-mRNA-1
Gene Sequence

>Msa1295220

ATGAGTTTTAGTATGAACATTCTTCAATCTTGCACAATCATAAATTCAACTCAACTCAACCCGATTCATGTTACTACTGAACATGAAAATTGTCTTCGGTTGAAGTCGAAGATCAATGGAAATAGTATTATGACATTCATTGGTGGATTCACAGCTGCACAATTGGTTGCTCCAGTCACTGCAAAAGCTGAAATGGTTGCTCCTGTTTTTACTTTGGCTGATGGAGGCATCGGTGACTGGTTTGGAGGCATTCTATTTTCAGCCGGACAACAGGCCAATGAAGCAGTTCTGGACCAACTATCCTCCTTAAGTTTCACTAGTTTGGCTGTAATTTATGGGGCAGGACTTGTAACCAGCCTTTCTCCCTGTACGCTTAGTGTGTTACCGCTAACTCTCGGTTACATTGGGGCTTTTGGCTCTGGAAAAAGCAGAGCACAGGAAATTTGTGTCGTAAAAAACAGAACCATCCAAATTAAGCAACGAAACATAGCTAACCGCCACAACTCAACTCAACTCAAGTTGGATTTTTGGCATTCCCTTCTTCTATTCCGTTCCGTAATCATAAATTCAACTCAACTTAACCCGATTCATGTTACTACTGAACATGAAAATTGTCTTCGGTTGAAGTCGAAGATCAATGGAAATAGTATTATGACATTCATTGGTGGATTCACAGCTGCACAATTGGTTGCTCCAGTCACTGCAAAAGCTGAAATGGTTGCTCCTGTTTTTACTTTGGCTGATGGAGGCCTCGGTGACTGGTTTGGAGGCATTCTATTTTCAGCGGGACAACAGGCCAATGAAGCAGTTCTGGACCAACTATCGTCCTTAAGTTTTACTAGGGGCTTTTGGCTCTGGAAAAAGCAGAGCACAGTAAGGGATATGTCATTAGACACCATTGAT

Protein sequence

>Msa1295220

MSFSMNILQSCTIINSTQLNPIHVTTEHENCLRLKSKINGNSIMTFIGGFTAAQLVAPVTAKAEMVAPVFTLADGGIGDWFGGILFSAGQQANEAVLDQLSSLSFTSLAVIYGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQEICVVKNRTIQIKQRNIANRHNSTQLKLDFWHSLLLFRSVIINSTQLNPIHVTTEHENCLRLKSKINGNSIMTFIGGFTAAQLVAPVTAKAEMVAPVFTLADGGLGDWFGGILFSAGQQANEAVLDQLSSLSFTRGFWLWKKQSTVRDMSLDTID