AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550870 MtrunA17_Chr4g0035791 91.058 548 24 2 1 523 1 548 0.0 965
Msa0550870 MtrunA17_Chr4g0035811 88.300 547 36 2 1 523 34 576 0.0 934
Msa0550870 MtrunA17_Chr4g0035761 75.856 555 96 6 1 522 1 550 0.0 802
Msa0550870 MtrunA17_Chr4g0035741 66.239 545 144 5 13 523 12 550 0.0 693
Msa0550870 MtrunA17_Chr4g0035751 64.007 539 149 5 1 510 1 523 0.0 671
Msa0550870 MtrunA17_Chr5g0448591 24.593 492 283 17 71 505 83 543 1.05e-17 86.3
Msa0550870 MtrunA17_Chr2g0328761 24.304 395 244 9 105 452 36 422 2.50e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550870 AT2G21340.1 60.672 506 159 4 57 523 55 559 0.0 617
Msa0550870 AT2G21340.2 60.277 506 158 5 57 523 55 556 0.0 608
Msa0550870 AT4G39030.1 62.555 454 145 1 94 522 89 542 0.0 581
Msa0550870 AT2G38330.1 24.938 405 249 11 122 502 95 468 3.93e-18 87.8

Find 153 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTCTCATTCTTGGAATT+TGG 0.106484 4_1:-46448929 Msa0550870:three_prime_UTR
GCATGGCCTTGTTTACTTAT+TGG 0.177183 4_1:-46452805 Msa0550870:CDS
AATTGAAGACTGCATAATTT+TGG 0.181236 4_1:-46449237 Msa0550870:exon
TGACATTAATTATATTCTTA+TGG 0.193669 4_1:+46448824 None:intergenic
AGCAAATATGTTCTCATTCT+TGG 0.200815 4_1:-46448936 Msa0550870:three_prime_UTR
AGCTGTATTCGGGTTGCTTT+TGG 0.201078 4_1:-46450874 Msa0550870:CDS
CCCTCCAGGCCGACTGTTGC+AGG 0.218536 4_1:+46450635 None:intergenic
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_1:-46454378 Msa0550870:CDS
CTAACTATTGGAGCTGTATT+CGG 0.232506 4_1:-46450885 Msa0550870:CDS
GCCACTGGGGTATAGTTATT+TGG 0.233210 4_1:-46449007 Msa0550870:three_prime_UTR
ATCGATTGCTACTTCGAATA+TGG 0.233585 4_1:-46454150 Msa0550870:CDS
TGCTCTCCTCTATTTCTAAA+TGG 0.238561 4_1:+46448955 None:intergenic
GCTGCTGCCAGTATTATAAA+TGG 0.247426 4_1:-46452218 Msa0550870:CDS
ATTTGTGACATTGATGTTAA+AGG 0.250101 4_1:-46451550 Msa0550870:intron
AAGGAAATTGTATTGTTTAC+TGG 0.254805 4_1:-46454397 Msa0550870:CDS
CTTGGAATTTGGGTTCAAAA+TGG 0.256390 4_1:-46448918 Msa0550870:three_prime_UTR
CTAAGGTCTCTTCTAACTAT+TGG 0.258425 4_1:-46450897 Msa0550870:CDS
TCAATTGAACTTGCTGCTTT+AGG 0.260915 4_1:-46454301 Msa0550870:intron
CTGTGCAGATATTTAAACTA+TGG 0.264751 4_1:-46452179 Msa0550870:CDS
TCGGAAACTGTGCGGGGAAA+TGG 0.271411 4_1:-46449088 Msa0550870:three_prime_UTR
TGTTCTCATTCTTGGAATTT+GGG 0.281954 4_1:-46448928 Msa0550870:three_prime_UTR
GACATTAATTATATTCTTAT+GGG 0.282596 4_1:+46448825 None:intergenic
ACCAATTCCATTTATAATAC+TGG 0.285900 4_1:+46452211 None:intergenic
TGCTACTGCCCTTGCTAAAC+AGG 0.288099 4_1:-46454126 Msa0550870:intron
TGTTAAGCATGTTACAAAAT+AGG 0.300501 4_1:-46449158 Msa0550870:three_prime_UTR
GCATAAATGATTGGGCAGTT+TGG 0.309238 4_1:+46451214 None:intergenic
TAGAAGAAACCTCGCTGATT+TGG 0.310022 4_1:+46454479 None:intergenic
TTGGGGACCCTTGAAGGCTT+TGG 0.310354 4_1:-46452240 Msa0550870:CDS
CGGAAACTGTGCGGGGAAAT+GGG 0.313766 4_1:-46449087 Msa0550870:three_prime_UTR
CATAAATGATTGGGCAGTTT+GGG 0.318301 4_1:+46451215 None:intergenic
TCCTCCCACCTTCCCTTCTA+AGG 0.321409 4_1:-46454630 Msa0550870:CDS
TAGTAGTGTTCTTCCTTAGA+AGG 0.322137 4_1:+46454617 None:intergenic
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_1:-46454334 Msa0550870:CDS
AACTGGTTGAGCAGAGTATA+TGG 0.336997 4_1:-46454429 Msa0550870:CDS
TTGTTTACTGGACCTGCTAT+TGG 0.337810 4_1:-46454385 Msa0550870:CDS
ATGGGATTGCTGGGGCTGCA+TGG 0.341748 4_1:-46452160 Msa0550870:CDS
GTCTTGGTATGAAAGATTCT+TGG 0.344370 4_1:-46452259 Msa0550870:CDS
TATTTAAACTATGGGATTGC+TGG 0.346581 4_1:-46452170 Msa0550870:CDS
TAACTATTGGAGCTGTATTC+GGG 0.354893 4_1:-46450884 Msa0550870:CDS
GTGATCAAGTGTGGTGCCAC+TGG 0.372752 4_1:-46449022 Msa0550870:three_prime_UTR
CAGATCCTATCCAGCAGATA+TGG 0.375163 4_1:-46449468 Msa0550870:CDS
GACAGGCTCGGTCGCTTCTA+AGG 0.385164 4_1:-46450914 Msa0550870:intron
TGGGTTCAAAATGGCTTGTA+AGG 0.388067 4_1:-46448909 Msa0550870:three_prime_UTR
TGGGATTGCTGGGGCTGCAT+GGG 0.388672 4_1:-46452159 Msa0550870:CDS
CGGCCTGGAGGGAACATTGC+TGG 0.395766 4_1:-46450624 Msa0550870:intron
TCTTGGTATGAAAGATTCTT+GGG 0.396058 4_1:-46452258 Msa0550870:CDS
TTTCACTTGCTGGATTTCAA+TGG 0.400259 4_1:-46449428 Msa0550870:CDS
GCTATTGGTCTTTGGTTATG+TGG 0.403668 4_1:-46454370 Msa0550870:CDS
TAATGCATTGGTTTGGTGAA+TGG 0.412748 4_1:+46454593 None:intergenic
GGCAGCAGCCAAAGCCTTCA+AGG 0.419588 4_1:+46452232 None:intergenic
TCAACTCAGGCATAAATGAT+TGG 0.421244 4_1:+46451205 None:intergenic
AACATCAATGTCACAAATAC+AGG 0.423376 4_1:+46451555 None:intergenic
AGAAGAAGAAGTGAAGGAAC+TGG 0.429921 4_1:-46454446 Msa0550870:CDS
TTCACTTGCTGGATTTCAAT+GGG 0.432604 4_1:-46449427 Msa0550870:intron
GTATGGAGTAAATCGGAGTT+TGG 0.433384 4_1:-46451181 Msa0550870:CDS
GAAACTCGAAGCGACTGTTC+CGG 0.441889 4_1:+46454557 None:intergenic
GCCAGTATTATAAATGGAAT+TGG 0.442168 4_1:-46452212 Msa0550870:CDS
TGGGGCTGCATGGGCTACAT+TGG 0.444208 4_1:-46452150 Msa0550870:CDS
AGATTCTTGGGGACCCTTGA+AGG 0.447575 4_1:-46452246 Msa0550870:CDS
GCTTTGCCATTTAGAAATAG+AGG 0.450678 4_1:-46448961 Msa0550870:three_prime_UTR
TGTGCAGATATTTAAACTAT+GGG 0.453943 4_1:-46452178 Msa0550870:CDS
GATATAATAATGCATTGGTT+TGG 0.459532 4_1:+46454586 None:intergenic
CACACCTGCAACAGTCGGCC+TGG 0.466186 4_1:-46450639 Msa0550870:CDS
TGTCGATACAATTCAGTGCT+TGG 0.467061 4_1:-46449133 Msa0550870:three_prime_UTR
CGCAGCTAATACTTATGTCC+AGG 0.472482 4_1:-46453128 Msa0550870:intron
TTTATGCCTGAGTTGATGTA+TGG 0.474513 4_1:-46451198 Msa0550870:CDS
AAGATATACGTTCAAGGCGG+TGG 0.474818 4_1:+46449046 None:intergenic
GCCTTGCAAACCATATCTGC+TGG 0.476879 4_1:+46449458 None:intergenic
AAATGCCATTGGGAGATAGA+AGG 0.478517 4_1:+46449296 None:intergenic
TCCTGGATGACCATTTGATC+AGG 0.486992 4_1:+46450804 None:intergenic
ACCTGATCAAATGGTCATCC+AGG 0.487046 4_1:-46450805 Msa0550870:CDS
TTGTTGTAACATCTGTTACT+TGG 0.487060 4_1:-46450848 Msa0550870:CDS
AGTTGTATCGGAAACTGTGC+GGG 0.487415 4_1:-46449095 Msa0550870:three_prime_UTR
ATTTAAACTATGGGATTGCT+GGG 0.490545 4_1:-46452169 Msa0550870:CDS
AGTTGATGTATGGAGTAAAT+CGG 0.492680 4_1:-46451188 Msa0550870:CDS
CAACTCAGGCATAAATGATT+GGG 0.499704 4_1:+46451206 None:intergenic
CTGCAGGTGCTGAGTTGTAT+CGG 0.500020 4_1:-46449107 Msa0550870:three_prime_UTR
TGATCAAGTGTGGTGCCACT+GGG 0.500320 4_1:-46449021 Msa0550870:three_prime_UTR
TTGGTGTTAGATTCGAGGGT+TGG 0.502304 4_1:-46452827 Msa0550870:intron
TTCCGAGTATAAAATGCCAT+TGG 0.504973 4_1:+46449285 None:intergenic
TTTCCTTCACCATTCCTTCA+GGG 0.508678 4_1:-46451611 Msa0550870:CDS
TGAAAATCATTGATTGTGGA+TGG 0.509934 4_1:+46448793 None:intergenic
TCCGAGTATAAAATGCCATT+GGG 0.511889 4_1:+46449286 None:intergenic
TTCAAAATGGCTTGTAAGGT+AGG 0.514855 4_1:-46448905 Msa0550870:three_prime_UTR
GGAAACTGTGCGGGGAAATG+GGG 0.518399 4_1:-46449086 Msa0550870:three_prime_UTR
CTTCACCATTCCTTCAGGGA+AGG 0.518414 4_1:-46451607 Msa0550870:CDS
GCAAACCATATCTGCTGGAT+AGG 0.523619 4_1:+46449463 None:intergenic
TTGTGATTATGCAGATGCAT+AGG 0.528902 4_1:-46450694 Msa0550870:intron
CCTGCAACAGTCGGCCTGGA+GGG 0.530670 4_1:-46450635 Msa0550870:CDS
TGGGAGATAGAAGGCGCAGA+AGG 0.531589 4_1:+46449305 None:intergenic
GAGTATATGGATTCAGATGA+AGG 0.533192 4_1:-46454416 Msa0550870:CDS
GTCTGTAACGTGGAATCCGC+GGG 0.538341 4_1:+46454815 None:intergenic
ATCACAAAGATATACGTTCA+AGG 0.539081 4_1:+46449040 None:intergenic
GATTGGGCAGTTTGGGAGAG+AGG 0.541089 4_1:+46451222 None:intergenic
TTAGGCGCAACAACGCTAGC+AGG 0.548010 4_1:-46453310 Msa0550870:intron
TATGTTTGTGTAGGATAGGG+AGG 0.548718 4_1:-46453410 Msa0550870:intron
AAGCCACCATAAAAGTAGAA+AGG 0.550147 4_1:+46448980 None:intergenic
TCGAGGATATAATAATGCAT+TGG 0.555719 4_1:+46454581 None:intergenic
AAATTCCTTCCCTGAAGGAA+TGG 0.556149 4_1:+46451602 None:intergenic
GTTAGATTCGAGGGTTGGCA+TGG 0.557043 4_1:-46452822 Msa0550870:intron
TCCAGCAGATATGGTTTGCA+AGG 0.560688 4_1:-46449459 Msa0550870:CDS
GACAGAAATTCCTTCCCTGA+AGG 0.564886 4_1:+46451597 None:intergenic
AGTAGTGTTCTTCCTTAGAA+GGG 0.565504 4_1:+46454618 None:intergenic
GTGTTCTTCCTTAGAAGGGA+AGG 0.565700 4_1:+46454622 None:intergenic
AAGAACAAACCTGTTTAGCA+AGG 0.565978 4_1:+46454117 None:intergenic
ATTCAGTGCTTGGAAACTGC+AGG 0.566478 4_1:-46449123 Msa0550870:three_prime_UTR
ATACCAGCAATGTTCCCTCC+AGG 0.568305 4_1:+46450621 None:intergenic
TATTGGGTTAGCATGTGGCT+CGG 0.569231 4_1:-46453356 Msa0550870:CDS
GAAACTGTGCGGGGAAATGG+GGG 0.573752 4_1:-46449085 Msa0550870:three_prime_UTR
GCAGCAGCCAAAGCCTTCAA+GGG 0.575285 4_1:+46452233 None:intergenic
GATATGGTTTGCAAGGCTGT+TGG 0.577198 4_1:-46449452 Msa0550870:CDS
TCCTTAGAAGGGAAGGTGGG+AGG 0.582462 4_1:+46454629 None:intergenic
CTGCGCCTTCTATCTCCCAA+TGG 0.586913 4_1:-46449301 Msa0550870:CDS
GCATTATTATATCCTCGAGC+CGG 0.588156 4_1:-46454576 Msa0550870:CDS
TCATTGATTGTGGATGGGAA+TGG 0.591699 4_1:+46448799 None:intergenic
TTCTTCCTTAGAAGGGAAGG+TGG 0.595058 4_1:+46454625 None:intergenic
CTTCCCTGAAGGAATGGTGA+AGG 0.598270 4_1:+46451608 None:intergenic
GAAAATCATTGATTGTGGAT+GGG 0.600432 4_1:+46448794 None:intergenic
ACCTGCAACAGTCGGCCTGG+AGG 0.603468 4_1:-46450636 Msa0550870:CDS
GATCGATTGCTCAAAGTGCA+AGG 0.606336 4_1:-46452783 Msa0550870:intron
GAGCAAAGCTCTAAATGACA+AGG 0.606474 4_1:-46451646 Msa0550870:CDS
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_1:-46454328 Msa0550870:CDS
CCTCTGAAAATCATTGATTG+TGG 0.613798 4_1:+46448789 None:intergenic
GGGAGATAGAAGGCGCAGAA+GGG 0.619859 4_1:+46449306 None:intergenic
AGAACAAACCTGTTTAGCAA+GGG 0.621535 4_1:+46454118 None:intergenic
TGGACATAAGTATTAGCTGC+GGG 0.623250 4_1:+46453130 None:intergenic
AGTAAATCGGAGTTTGGCAA+AGG 0.624488 4_1:-46451175 Msa0550870:intron
GAAGCGACTGTTCCGGCTCG+AGG 0.626649 4_1:+46454564 None:intergenic
TACATGTTATGCGCAATATG+TGG 0.626684 4_1:-46451249 Msa0550870:CDS
GGTCTGTAACGTGGAATCCG+CGG 0.629745 4_1:+46454814 None:intergenic
GTATCAATGAGACTCATCAA+TGG 0.630837 4_1:+46454346 None:intergenic
TTTACTCCATACATCAACTC+AGG 0.632825 4_1:+46451192 None:intergenic
TCTTCCTTAGAAGGGAAGGT+GGG 0.639612 4_1:+46454626 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 4_1:+46454373 None:intergenic
AAAACGAGTGGTCTGTAACG+TGG 0.648411 4_1:+46454805 None:intergenic
AGAAAGAGAAAGAAAACGAG+TGG 0.653179 4_1:+46454793 None:intergenic
AGCAAAGCTCTAAATGACAA+GGG 0.653537 4_1:-46451645 Msa0550870:CDS
ATCGATCCAATAAGTAAACA+AGG 0.654105 4_1:+46452799 None:intergenic
ACATTTGGTTATCATTCCCG+CGG 0.656594 4_1:-46454831 None:intergenic
TATATCTTTGTGATCAAGTG+TGG 0.669008 4_1:-46449031 Msa0550870:three_prime_UTR
TTTAAACTATGGGATTGCTG+GGG 0.669847 4_1:-46452168 Msa0550870:CDS
CTTGGTATGAAAGATTCTTG+GGG 0.676112 4_1:-46452257 Msa0550870:CDS
CTGGTCACACCTGCAACAGT+CGG 0.690613 4_1:-46450644 Msa0550870:CDS
CTGGACATAAGTATTAGCTG+CGG 0.697551 4_1:+46453129 None:intergenic
TGATCAAATGGTCATCCAGG+AGG 0.702782 4_1:-46450802 Msa0550870:intron
GAGTTGTATCGGAAACTGTG+CGG 0.703127 4_1:-46449096 Msa0550870:three_prime_UTR
GGAGGAAACGAAGAGGTACG+TGG 0.706220 4_1:+46454647 None:intergenic
GAAGGTGGGAGGAAACGAAG+AGG 0.710311 4_1:+46454640 None:intergenic
ACCAAATAACTATACCCCAG+TGG 0.721142 4_1:+46449006 None:intergenic
GTTGTATCGGAAACTGTGCG+GGG 0.735175 4_1:-46449094 Msa0550870:three_prime_UTR
GATCAAGTGTGGTGCCACTG+GGG 0.737199 4_1:-46449020 Msa0550870:three_prime_UTR
TGGCTTGTAAGGTAGGAATG+TGG 0.773808 4_1:-46448898 Msa0550870:three_prime_UTR
ACAAAGATATACGTTCAAGG+CGG 0.792492 4_1:+46449043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATCATAAAATAATTTA+TGG - chr4_1:46450582-46450601 Msa0550870:intron 10.0%
!! TTTCTATCCAATTAAAAAAT+GGG + chr4_1:46449533-46449552 None:intergenic 15.0%
!!! TTTTCTATCCAATTAAAAAA+TGG + chr4_1:46449534-46449553 None:intergenic 15.0%
!! TTTATTCTATATCATTAGTT+TGG + chr4_1:46449631-46449650 None:intergenic 15.0%
!! ATAATCTTAATTGAAATTGA+AGG + chr4_1:46450540-46450559 None:intergenic 15.0%
!!! TTTCTTGTTATAGTAAATAA+AGG - chr4_1:46450631-46450650 Msa0550870:CDS 15.0%
!!! TTTTTAGTTTATGTTCAATT+TGG - chr4_1:46450957-46450976 Msa0550870:intron 15.0%
!! TTAATTATTGGTATCATATA+TGG - chr4_1:46451881-46451900 Msa0550870:intron 15.0%
!!! TATTTTAGTACATTGAAAAT+AGG + chr4_1:46451912-46451931 None:intergenic 15.0%
!! TAAAAGATATAAAATCACTA+TGG + chr4_1:46453165-46453184 None:intergenic 15.0%
!! GACATTAATTATATTCTTAT+GGG + chr4_1:46454798-46454817 None:intergenic 15.0%
!! TGACATTAATTATATTCTTA+TGG + chr4_1:46454799-46454818 None:intergenic 15.0%
!! AAAGAATCAGAGAAAAATAT+GGG + chr4_1:46448867-46448886 None:intergenic 20.0%
!! AAAAGAATCAGAGAAAAATA+TGG + chr4_1:46448868-46448887 None:intergenic 20.0%
!!! TACTGTTTTTTGTGATTATT+TGG - chr4_1:46449428-46449447 Msa0550870:CDS 20.0%
!!! ACTGTTTTTTGTGATTATTT+GGG - chr4_1:46449429-46449448 Msa0550870:CDS 20.0%
!!! CTTTATTCCCATTTTTTAAT+TGG - chr4_1:46449523-46449542 Msa0550870:intron 20.0%
!! TAGAATAAAGATAATTCGTA+TGG - chr4_1:46449642-46449661 Msa0550870:intron 20.0%
!! AATAATGCCAAAAAATTTAC+TGG + chr4_1:46450117-46450136 None:intergenic 20.0%
!! CAAACATATTAACTAATCAA+AGG + chr4_1:46450198-46450217 None:intergenic 20.0%
!! ATTAGTTAATATGTTTGTGT+AGG - chr4_1:46450201-46450220 Msa0550870:intron 20.0%
!! TTACTATTATCCCAAAAAAA+GGG + chr4_1:46450367-46450386 None:intergenic 20.0%
!! ATTACTATTATCCCAAAAAA+AGG + chr4_1:46450368-46450387 None:intergenic 20.0%
!!! TACTTTATTTAAAGAAGCAT+TGG + chr4_1:46450665-46450684 None:intergenic 20.0%
!! TACATATTGAAATTGATCAA+AGG - chr4_1:46450728-46450747 Msa0550870:intron 20.0%
!! AACAGTTTAAAGAACAATTT+AGG + chr4_1:46451171-46451190 None:intergenic 20.0%
!! TCTCATTTAATTCATATTCT+TGG - chr4_1:46451318-46451337 Msa0550870:intron 20.0%
!! TACATTGTAAACAAGTAATT+AGG - chr4_1:46451526-46451545 Msa0550870:intron 20.0%
!! ACATTGTAAACAAGTAATTA+GGG - chr4_1:46451527-46451546 Msa0550870:intron 20.0%
!! TTGTATTAAGCTTACTAATT+AGG - chr4_1:46451764-46451783 Msa0550870:intron 20.0%
!! CACACATCATAATTAATTAT+TGG - chr4_1:46451869-46451888 Msa0550870:intron 20.0%
!! GAACTTTCAGTTATATTTAA+AGG + chr4_1:46452147-46452166 None:intergenic 20.0%
!!! TATATATTTTGCTACATCAA+TGG - chr4_1:46452197-46452216 Msa0550870:CDS 20.0%
!!! ATATATTTTGCTACATCAAT+GGG - chr4_1:46452198-46452217 Msa0550870:CDS 20.0%
!! TTAAAATATGTTTGTGAGTT+TGG + chr4_1:46452319-46452338 None:intergenic 20.0%
!!! TTTAACTCAACTCTTATTTT+AGG - chr4_1:46452334-46452353 Msa0550870:intron 20.0%
!! AAAACGATACTATATATATG+AGG + chr4_1:46452514-46452533 None:intergenic 20.0%
!!! AGTTGATTTTCATTTTATAG+AGG - chr4_1:46452553-46452572 Msa0550870:intron 20.0%
!! TGAATATACATAACAATGTA+TGG + chr4_1:46452660-46452679 None:intergenic 20.0%
!!! TTATTTTAGTGTTCTTATGT+TGG - chr4_1:46453054-46453073 Msa0550870:intron 20.0%
!!! CATTTTTATGCTAAAAATCT+AGG + chr4_1:46453123-46453142 None:intergenic 20.0%
!!! TGTTAACAACTTTATCTTTT+AGG + chr4_1:46453326-46453345 None:intergenic 20.0%
!! TTCAATTTGTCTATAATGAA+TGG - chr4_1:46453473-46453492 Msa0550870:intron 20.0%
!! ATAATGAATGGAAAAGAATA+TGG - chr4_1:46453485-46453504 Msa0550870:intron 20.0%
!! ATTAAATTGTCATGAATGTT+GGG + chr4_1:46453923-46453942 None:intergenic 20.0%
!! AATTAAATTGTCATGAATGT+TGG + chr4_1:46453924-46453943 None:intergenic 20.0%
!!! GATATAATAATGCATTGGTT+TGG + chr4_1:46449037-46449056 None:intergenic 25.0%
! AAGGAAATTGTATTGTTTAC+TGG - chr4_1:46449223-46449242 Msa0550870:three_prime_UTR 25.0%
! TGAAATTGCACAATAATGTA+TGG - chr4_1:46449376-46449395 Msa0550870:intron 25.0%
! TATTGATGAATATGTGTGAA+TGG - chr4_1:46449554-46449573 Msa0550870:intron 25.0%
! ATTGATGAATATGTGTGAAT+GGG - chr4_1:46449555-46449574 Msa0550870:intron 25.0%
! ATCAAAAGTCTTTCTTGTAA+TGG - chr4_1:46449808-46449827 Msa0550870:intron 25.0%
!! ATTTAAAGCAATGCATGATT+AGG - chr4_1:46450049-46450068 Msa0550870:intron 25.0%
!!! CAAAAGACCAGTAAATTTTT+TGG - chr4_1:46450107-46450126 Msa0550870:intron 25.0%
! ACATATTAACTAATCAAAGG+CGG + chr4_1:46450195-46450214 None:intergenic 25.0%
! TTAATATGTTTGTGTAGGAT+AGG - chr4_1:46450206-46450225 Msa0550870:intron 25.0%
! TAATATGTTTGTGTAGGATA+GGG - chr4_1:46450207-46450226 Msa0550870:intron 25.0%
!!! ATATCTGTCTTGCTTTTTAT+TGG - chr4_1:46450247-46450266 Msa0550870:intron 25.0%
!!! TATCTGTCTTGCTTTTTATT+GGG - chr4_1:46450248-46450267 Msa0550870:intron 25.0%
!!! CTTTTTTTCACAAGGTTATT+AGG - chr4_1:46450292-46450311 Msa0550870:intron 25.0%
! GTAATTCACTAATGCATAAA+TGG - chr4_1:46450383-46450402 Msa0550870:intron 25.0%
! TAAAACAATTCATCAGTCAT+GGG + chr4_1:46450422-46450441 None:intergenic 25.0%
! ATAAAACAATTCATCAGTCA+TGG + chr4_1:46450423-46450442 None:intergenic 25.0%
! TAATCAGAAAGAAAAAAACC+TGG + chr4_1:46450513-46450532 None:intergenic 25.0%
! TATTGAAATTGATCAAAGGA+AGG - chr4_1:46450732-46450751 Msa0550870:intron 25.0%
!! TAGTAACACTGAATTTCTTT+TGG - chr4_1:46450774-46450793 Msa0550870:intron 25.0%
!! TAATAGTTGCTTGAAACTTT+TGG - chr4_1:46450995-46451014 Msa0550870:intron 25.0%
! ACCAATTCCATTTATAATAC+TGG + chr4_1:46451412-46451431 None:intergenic 25.0%
! TGTGCAGATATTTAAACTAT+GGG - chr4_1:46451442-46451461 Msa0550870:CDS 25.0%
!! GTAATGCATATAAGTTTGTT+CGG + chr4_1:46451509-46451528 None:intergenic 25.0%
! CAAAACACGTTAAAACATTT+CGG + chr4_1:46451635-46451654 None:intergenic 25.0%
!!! AATGTTTTAACGTGTTTTGA+AGG - chr4_1:46451636-46451655 Msa0550870:CDS 25.0%
! ATTTGTGACATTGATGTTAA+AGG - chr4_1:46452070-46452089 Msa0550870:intron 25.0%
! TACTATATATATGAGGTTGA+AGG + chr4_1:46452507-46452526 None:intergenic 25.0%
!!! ATCTTTCTTTTTGGTTTGAA+GGG - chr4_1:46452579-46452598 Msa0550870:intron 25.0%
! ATCTACAATGTGAATTAGTA+AGG + chr4_1:46452632-46452651 None:intergenic 25.0%
! GTTGAATTTACAGGAAATAA+TGG + chr4_1:46453446-46453465 None:intergenic 25.0%
! AAGTACATATACATAAGAAG+CGG + chr4_1:46453581-46453600 None:intergenic 25.0%
! TTAAATTGTCATGAATGTTG+GGG + chr4_1:46453922-46453941 None:intergenic 25.0%
! TTTATAAGTTTGTCAATGAC+TGG - chr4_1:46454016-46454035 Msa0550870:intron 25.0%
! TTTGAATGGTCTAGTATTAT+TGG - chr4_1:46454048-46454067 Msa0550870:intron 25.0%
! CATATTGTGTTTATTAGGTT+CGG - chr4_1:46454281-46454300 Msa0550870:intron 25.0%
!! AATTGAAGACTGCATAATTT+TGG - chr4_1:46454383-46454402 Msa0550870:CDS 25.0%
! AATGTACCATGAACTAAAAA+TGG + chr4_1:46454413-46454432 None:intergenic 25.0%
! TGTTAAGCATGTTACAAAAT+AGG - chr4_1:46454462-46454481 Msa0550870:CDS 25.0%
CTCTTCGAAGAAAACAAAAA+TGG - chr4_1:46448892-46448911 Msa0550870:three_prime_UTR 30.0%
TCGAGGATATAATAATGCAT+TGG + chr4_1:46449042-46449061 None:intergenic 30.0%
! GCACAATAATGTATGGATTT+TGG - chr4_1:46449383-46449402 Msa0550870:intron 30.0%
TAATCACAAAAAACAGTAGC+AGG + chr4_1:46449426-46449445 None:intergenic 30.0%
TTGTCATTGTTGGATGTATA+CGG + chr4_1:46450015-46450034 None:intergenic 30.0%
! TTTATGCACACAGAACTTTT+AGG - chr4_1:46450159-46450178 Msa0550870:intron 30.0%
AAAACAATTCATCAGTCATG+GGG + chr4_1:46450421-46450440 None:intergenic 30.0%
AAGTAGACAACCTTTCAAAT+AGG - chr4_1:46450680-46450699 Msa0550870:CDS 30.0%
AAAGCAGAATCCTATTTGAA+AGG + chr4_1:46450693-46450712 None:intergenic 30.0%
! TTCAGTGTTACTAAATCAAG+CGG + chr4_1:46450767-46450786 None:intergenic 30.0%
ATCGATCCAATAAGTAAACA+AGG + chr4_1:46450824-46450843 None:intergenic 30.0%
TATCTGAGAAAAGTCATTCA+TGG + chr4_1:46451036-46451055 None:intergenic 30.0%
GTATACTATTGAGTGACAAA+AGG + chr4_1:46451067-46451086 None:intergenic 30.0%
AGCACATTAAACTATTCTCA+GGG + chr4_1:46451213-46451232 None:intergenic 30.0%
AAGCACATTAAACTATTCTC+AGG + chr4_1:46451214-46451233 None:intergenic 30.0%
TCTTGGTATGAAAGATTCTT+GGG - chr4_1:46451362-46451381 Msa0550870:intron 30.0%
GCCAGTATTATAAATGGAAT+TGG - chr4_1:46451408-46451427 Msa0550870:CDS 30.0%
CTGTGCAGATATTTAAACTA+TGG - chr4_1:46451441-46451460 Msa0550870:CDS 30.0%
TATTTAAACTATGGGATTGC+TGG - chr4_1:46451450-46451469 Msa0550870:intron 30.0%
ATTTAAACTATGGGATTGCT+GGG - chr4_1:46451451-46451470 Msa0550870:intron 30.0%
!!! ACGTGTTTTGAAGGTTTTTA+TGG - chr4_1:46451645-46451664 Msa0550870:CDS 30.0%
!!! CGTGTTTTGAAGGTTTTTAT+GGG - chr4_1:46451646-46451665 Msa0550870:CDS 30.0%
!!! GTGTTTTGAAGGTTTTTATG+GGG - chr4_1:46451647-46451666 Msa0550870:CDS 30.0%
TTTGGATTATAGAATCCGAA+CGG + chr4_1:46451681-46451700 None:intergenic 30.0%
! AATATAGAAGCTTTAGCTCA+TGG + chr4_1:46451790-46451809 None:intergenic 30.0%
AACATCAATGTCACAAATAC+AGG + chr4_1:46452068-46452087 None:intergenic 30.0%
! AGTTGATGTATGGAGTAAAT+CGG - chr4_1:46452432-46452451 Msa0550870:intron 30.0%
! TAGAGGATCATCTTTCTTTT+TGG - chr4_1:46452570-46452589 Msa0550870:intron 30.0%
!!! CATCTTTCTTTTTGGTTTGA+AGG - chr4_1:46452578-46452597 Msa0550870:intron 30.0%
GTCAAGATACTATAAACTCA+GGG + chr4_1:46452689-46452708 None:intergenic 30.0%
TGTCAAGATACTATAAACTC+AGG + chr4_1:46452690-46452709 None:intergenic 30.0%
TGAGTTTATAGTATCTTGAC+AGG - chr4_1:46452689-46452708 Msa0550870:intron 30.0%
TTGTTGTAACATCTGTTACT+TGG - chr4_1:46452772-46452791 Msa0550870:intron 30.0%
TGATCAGGTGTAAAAATGTA+GGG + chr4_1:46452804-46452823 None:intergenic 30.0%
TTGATCAGGTGTAAAAATGT+AGG + chr4_1:46452805-46452824 None:intergenic 30.0%
! CATTTTTACACCTGATCAAA+TGG - chr4_1:46452806-46452825 Msa0550870:CDS 30.0%
AAAAGAAGCCTTAATTCCAA+AGG + chr4_1:46452890-46452909 None:intergenic 30.0%
TCATGTTCGATTGGAATATT+AGG - chr4_1:46453024-46453043 Msa0550870:intron 30.0%
TTATGCTAAAAATCTAGGTC+AGG + chr4_1:46453118-46453137 None:intergenic 30.0%
ATAAAATCACTATGGAAGCT+TGG + chr4_1:46453157-46453176 None:intergenic 30.0%
!! TGAAATAGTCTTTGCTATTG+AGG - chr4_1:46453198-46453217 Msa0550870:intron 30.0%
CTACTAAATAGTTAAGGGTT+AGG + chr4_1:46453276-46453295 None:intergenic 30.0%
CAGAGCTACTAAATAGTTAA+GGG + chr4_1:46453281-46453300 None:intergenic 30.0%
GATAAAGTTGTTAACAAGAC+AGG - chr4_1:46453330-46453349 Msa0550870:CDS 30.0%
TTCCTGTAAATTCAACAGTT+TGG - chr4_1:46453450-46453469 Msa0550870:intron 30.0%
AACCAAACTGTTGAATTTAC+AGG + chr4_1:46453455-46453474 None:intergenic 30.0%
AGGATTAAGTTTGTAAGAAG+TGG + chr4_1:46453520-46453539 None:intergenic 30.0%
TCTTACAAACTTAATCCTCT+AGG - chr4_1:46453522-46453541 Msa0550870:intron 30.0%
TGTTTAAAGACTTCCTTACA+TGG - chr4_1:46453546-46453565 Msa0550870:intron 30.0%
TACATTGTCGTTACAACTAA+CGG + chr4_1:46453686-46453705 None:intergenic 30.0%
TGTAACGACAATGTAAGTAT+AGG - chr4_1:46453691-46453710 Msa0550870:intron 30.0%
! AGTCTCATATCGACTATAAA+AGG - chr4_1:46453766-46453785 Msa0550870:intron 30.0%
! CCTTAAGGCATTATGTATAT+GGG + chr4_1:46453817-46453836 None:intergenic 30.0%
! ACCTTAAGGCATTATGTATA+TGG + chr4_1:46453818-46453837 None:intergenic 30.0%
! TACATAATGCCTTAAGGTTT+TGG - chr4_1:46453820-46453839 Msa0550870:intron 30.0%
!! TATTGGTAACAACTTTTCCT+TGG - chr4_1:46454065-46454084 Msa0550870:intron 30.0%
TAGCACTTTCTATGAATTCT+AGG + chr4_1:46454230-46454249 None:intergenic 30.0%
TTTCATGAACATATTCTGAC+AGG - chr4_1:46454256-46454275 Msa0550870:intron 30.0%
TTCATGAACATATTCTGACA+GGG - chr4_1:46454257-46454276 Msa0550870:intron 30.0%
AGGGACATATTGTGTTTATT+AGG - chr4_1:46454276-46454295 Msa0550870:intron 30.0%
!! TTATTAGGTTCGGTTTTCAT+CGG - chr4_1:46454291-46454310 Msa0550870:intron 30.0%
ATCACAAAGATATACGTTCA+AGG + chr4_1:46454583-46454602 None:intergenic 30.0%
TATATCTTTGTGATCAAGTG+TGG - chr4_1:46454589-46454608 Msa0550870:CDS 30.0%
!! GGTAAACCTTTCTACTTTTA+TGG - chr4_1:46454634-46454653 Msa0550870:CDS 30.0%
!! AAACCTTTCTACTTTTATGG+TGG - chr4_1:46454637-46454656 Msa0550870:CDS 30.0%
AGCAAATATGTTCTCATTCT+TGG - chr4_1:46454684-46454703 Msa0550870:CDS 30.0%
ATGTTCTCATTCTTGGAATT+TGG - chr4_1:46454691-46454710 Msa0550870:CDS 30.0%
TGTTCTCATTCTTGGAATTT+GGG - chr4_1:46454692-46454711 Msa0550870:CDS 30.0%
! GAAAATCATTGATTGTGGAT+GGG + chr4_1:46454829-46454848 None:intergenic 30.0%
AGAAAGAGAAAGAAAACGAG+TGG + chr4_1:46448830-46448849 None:intergenic 35.0%
AGTAGTGTTCTTCCTTAGAA+GGG + chr4_1:46449005-46449024 None:intergenic 35.0%
TAGTAGTGTTCTTCCTTAGA+AGG + chr4_1:46449006-46449025 None:intergenic 35.0%
!! TAATGCATTGGTTTGGTGAA+TGG + chr4_1:46449030-46449049 None:intergenic 35.0%
!!! GCTGATTTGGTCTTTTTCTT+CGG + chr4_1:46449131-46449150 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGTGA+AGG - chr4_1:46449168-46449187 Msa0550870:three_prime_UTR 35.0%
GAGTATATGGATTCAGATGA+AGG - chr4_1:46449204-46449223 Msa0550870:three_prime_UTR 35.0%
GTATCAATGAGACTCATCAA+TGG + chr4_1:46449277-46449296 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG - chr4_1:46449319-46449338 Msa0550870:CDS 35.0%
!!! ATTTTGGTTTCTACATGAGC+AGG - chr4_1:46449399-46449418 Msa0550870:intron 35.0%
! ATCGATTGCTACTTCGAATA+TGG - chr4_1:46449470-46449489 Msa0550870:intron 35.0%
AGAACAAACCTGTTTAGCAA+GGG + chr4_1:46449505-46449524 None:intergenic 35.0%
AAGAACAAACCTGTTTAGCA+AGG + chr4_1:46449506-46449525 None:intergenic 35.0%
AGCTTGTATTCAAATGTGAG+TGG - chr4_1:46449579-46449598 Msa0550870:intron 35.0%
TTCGTATGGCTAATGATCTT+AGG - chr4_1:46449656-46449675 Msa0550870:intron 35.0%
! TGGCTAATGATCTTAGGTTT+TGG - chr4_1:46449662-46449681 Msa0550870:intron 35.0%
! GGCTAATGATCTTAGGTTTT+GGG - chr4_1:46449663-46449682 Msa0550870:intron 35.0%
!!! TAATGATCTTAGGTTTTGGG+TGG - chr4_1:46449666-46449685 Msa0550870:intron 35.0%
TGGTCTTTGTAGTTCATGAT+TGG - chr4_1:46449702-46449721 Msa0550870:intron 35.0%
AAAAAATGTGAGTGTGACCT+TGG - chr4_1:46449876-46449895 Msa0550870:intron 35.0%
TGTCATTGTTGGATGTATAC+GGG + chr4_1:46450014-46450033 None:intergenic 35.0%
! TCCAACAATGACAAAAGCAT+AGG - chr4_1:46450021-46450040 Msa0550870:intron 35.0%
! TCCTATGCTTTTGTCATTGT+TGG + chr4_1:46450025-46450044 None:intergenic 35.0%
!!! CTTTTTATTGGGTTAGCATG+TGG - chr4_1:46450259-46450278 Msa0550870:intron 35.0%
!!! TTGCCTTTTTCAGCTTTTAC+TGG - chr4_1:46450445-46450464 Msa0550870:intron 35.0%
GATCCAGTAAAAGCTGAAAA+AGG + chr4_1:46450451-46450470 None:intergenic 35.0%
!!! TTCTTTTGGTGTTAGATTCG+AGG - chr4_1:46450788-46450807 Msa0550870:intron 35.0%
!!! TCTTTTGGTGTTAGATTCGA+GGG - chr4_1:46450789-46450808 Msa0550870:intron 35.0%
! ATGACTTTTCTCAGATAGCA+AGG - chr4_1:46451039-46451058 Msa0550870:intron 35.0%
AAGCAATAGTTTACTCCTCA+GGG + chr4_1:46451260-46451279 None:intergenic 35.0%
AAAGCAATAGTTTACTCCTC+AGG + chr4_1:46451261-46451280 None:intergenic 35.0%
GTCTTGGTATGAAAGATTCT+TGG - chr4_1:46451361-46451380 Msa0550870:intron 35.0%
CTTGGTATGAAAGATTCTTG+GGG - chr4_1:46451363-46451382 Msa0550870:intron 35.0%
TTTAAACTATGGGATTGCTG+GGG - chr4_1:46451452-46451471 Msa0550870:intron 35.0%
! TAAGTTTGTTCGGCATACTT+GGG + chr4_1:46451499-46451518 None:intergenic 35.0%
! ATAAGTTTGTTCGGCATACT+TGG + chr4_1:46451500-46451519 None:intergenic 35.0%
!!! CGGATTTTAGAATCCGAATA+GGG + chr4_1:46451615-46451634 None:intergenic 35.0%
!!! TCGGATTTTAGAATCCGAAT+AGG + chr4_1:46451616-46451635 None:intergenic 35.0%
!! AGCAAAGCTCTAAATGACAA+GGG - chr4_1:46451975-46451994 Msa0550870:intron 35.0%
! AACTGAAAGTTCTGATGTGT+AGG - chr4_1:46452155-46452174 Msa0550870:CDS 35.0%
AGAGTTACAAAACACAAGAC+AGG + chr4_1:46452261-46452280 None:intergenic 35.0%
!!! CTTATTTTAGGTCATGCTTC+AGG - chr4_1:46452346-46452365 Msa0550870:intron 35.0%
TACATGTTATGCGCAATATG+TGG - chr4_1:46452371-46452390 Msa0550870:intron 35.0%
CATAAATGATTGGGCAGTTT+GGG + chr4_1:46452408-46452427 None:intergenic 35.0%
CAACTCAGGCATAAATGATT+GGG + chr4_1:46452417-46452436 None:intergenic 35.0%
TCAACTCAGGCATAAATGAT+TGG + chr4_1:46452418-46452437 None:intergenic 35.0%
!! TTTATGCCTGAGTTGATGTA+TGG - chr4_1:46452422-46452441 Msa0550870:intron 35.0%
TTTACTCCATACATCAACTC+AGG + chr4_1:46452431-46452450 None:intergenic 35.0%
GTGAATTAGTAAGGAGAACA+TGG + chr4_1:46452623-46452642 None:intergenic 35.0%
TTATAGTATCTTGACAGGCT+CGG - chr4_1:46452694-46452713 Msa0550870:intron 35.0%
CTAAGGTCTCTTCTAACTAT+TGG - chr4_1:46452723-46452742 Msa0550870:intron 35.0%
CTAACTATTGGAGCTGTATT+CGG - chr4_1:46452735-46452754 Msa0550870:intron 35.0%
TAACTATTGGAGCTGTATTC+GGG - chr4_1:46452736-46452755 Msa0550870:intron 35.0%
GATCAGGTGTAAAAATGTAG+GGG + chr4_1:46452803-46452822 None:intergenic 35.0%
AAATTCAAGAACTAACCTCC+TGG + chr4_1:46452836-46452855 None:intergenic 35.0%
GAAAATTTCACTGTCTCCTT+TGG - chr4_1:46452871-46452890 Msa0550870:intron 35.0%
! GGAATTAAGGCTTCTTTTAG+TGG - chr4_1:46452892-46452911 Msa0550870:intron 35.0%
TTGTGATTATGCAGATGCAT+AGG - chr4_1:46452926-46452945 Msa0550870:intron 35.0%
!! TCCATTCTTTTTAGCACTAC+TGG - chr4_1:46452957-46452976 Msa0550870:intron 35.0%
ACCAGTAGTGCTAAAAAGAA+TGG + chr4_1:46452961-46452980 None:intergenic 35.0%
!! TGTTGGTAGTGTTATTCAGT+TGG - chr4_1:46453071-46453090 Msa0550870:intron 35.0%
! TGCTATTGAGGTGCTAAAAA+AGG - chr4_1:46453210-46453229 Msa0550870:intron 35.0%
AGGAGTAAGCCTACTTATTT+CGG - chr4_1:46453230-46453249 Msa0550870:intron 35.0%
CCTACTTATTTCGGTAGAAT+GGG - chr4_1:46453239-46453258 Msa0550870:intron 35.0%
GCAGAGCTACTAAATAGTTA+AGG + chr4_1:46453282-46453301 None:intergenic 35.0%
!! TCTTTTAGGAGAACTGATCT+TGG + chr4_1:46453312-46453331 None:intergenic 35.0%
GAAGTCTTTAAACATCCTAG+AGG + chr4_1:46453540-46453559 None:intergenic 35.0%
ACATATACATAAGAAGCGGT+TGG + chr4_1:46453577-46453596 None:intergenic 35.0%
! TCTTTCTAGCAGTGCAATTA+GGG - chr4_1:46453652-46453671 Msa0550870:intron 35.0%
CCCATATACATAATGCCTTA+AGG - chr4_1:46453814-46453833 Msa0550870:intron 35.0%
!!! TAATGCCTTAAGGTTTTGGA+TGG - chr4_1:46453824-46453843 Msa0550870:intron 35.0%
AAAAGAAGCAACATGCAACA+TGG + chr4_1:46453954-46453973 None:intergenic 35.0%
TTGTGTATATTTGCTCATGC+AGG - chr4_1:46453976-46453995 Msa0550870:intron 35.0%
!! ACTGGATGCTTTTGTTTGAA+TGG - chr4_1:46454034-46454053 Msa0550870:intron 35.0%
!! ACAACTTTTCCTTGGTTTTC+TGG - chr4_1:46454073-46454092 Msa0550870:intron 35.0%
! TTTCACTTGCTGGATTTCAA+TGG - chr4_1:46454192-46454211 Msa0550870:CDS 35.0%
! TTCACTTGCTGGATTTCAAT+GGG - chr4_1:46454193-46454212 Msa0550870:CDS 35.0%
! TCCCAATGGCATTTTATACT+CGG - chr4_1:46454333-46454352 Msa0550870:CDS 35.0%
TCCGAGTATAAAATGCCATT+GGG + chr4_1:46454337-46454356 None:intergenic 35.0%
TTCCGAGTATAAAATGCCAT+TGG + chr4_1:46454338-46454357 None:intergenic 35.0%
ACAAAGATATACGTTCAAGG+CGG + chr4_1:46454580-46454599 None:intergenic 35.0%
AAGCCACCATAAAAGTAGAA+AGG + chr4_1:46454643-46454662 None:intergenic 35.0%
! GCTTTGCCATTTAGAAATAG+AGG - chr4_1:46454659-46454678 Msa0550870:CDS 35.0%
!! TGCTCTCCTCTATTTCTAAA+TGG + chr4_1:46454668-46454687 None:intergenic 35.0%
! CTTGGAATTTGGGTTCAAAA+TGG - chr4_1:46454702-46454721 Msa0550870:CDS 35.0%
! TTCAAAATGGCTTGTAAGGT+AGG - chr4_1:46454715-46454734 Msa0550870:exon 35.0%
GCATTATTATATCCTCGAGC+CGG - chr4_1:46449044-46449063 Msa0550870:three_prime_UTR 40.0%
AGAAAAAGACCAAATCAGCG+AGG - chr4_1:46449132-46449151 Msa0550870:three_prime_UTR 40.0%
! TAGAAGAAACCTCGCTGATT+TGG + chr4_1:46449144-46449163 None:intergenic 40.0%
AGAAGAAGAAGTGAAGGAAC+TGG - chr4_1:46449174-46449193 Msa0550870:three_prime_UTR 40.0%
AACTGGTTGAGCAGAGTATA+TGG - chr4_1:46449191-46449210 Msa0550870:three_prime_UTR 40.0%
TTGTTTACTGGACCTGCTAT+TGG - chr4_1:46449235-46449254 Msa0550870:exon 40.0%
CATAACCAAAGACCAATAGC+AGG + chr4_1:46449250-46449269 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG - chr4_1:46449250-46449269 Msa0550870:CDS 40.0%
CTCATTGATACTGCTGTTGT+TGG - chr4_1:46449286-46449305 Msa0550870:CDS 40.0%
! TGGGTGGAAATGTAGTGTTT+TGG - chr4_1:46449682-46449701 Msa0550870:intron 40.0%
! TGTTGTTGCTCCCTATGTTT+TGG - chr4_1:46449731-46449750 Msa0550870:intron 40.0%
! GTTGTTGCTCCCTATGTTTT+GGG - chr4_1:46449732-46449751 Msa0550870:intron 40.0%
! TTGTTGCTCCCTATGTTTTG+GGG - chr4_1:46449733-46449752 Msa0550870:intron 40.0%
! CTTTCTTGTAATGGAGTCGT+TGG - chr4_1:46449817-46449836 Msa0550870:intron 40.0%
! ATGGAGTCGTTGGTTAGTAA+TGG - chr4_1:46449827-46449846 Msa0550870:intron 40.0%
TTCCATGGAGCCTAAAACAA+TGG - chr4_1:46449905-46449924 Msa0550870:intron 40.0%
! ATGGTCCACTCCATTGTTTT+AGG + chr4_1:46449918-46449937 None:intergenic 40.0%
TCGCTCTTAGTTCAATGTGA+TGG + chr4_1:46449937-46449956 None:intergenic 40.0%
AGTTCAAAGTCTCACTTGTG+TGG + chr4_1:46449960-46449979 None:intergenic 40.0%
GTTCTGTGTGCATAAAGTCA+TGG + chr4_1:46450155-46450174 None:intergenic 40.0%
TATGTTTGTGTAGGATAGGG+AGG - chr4_1:46450210-46450229 Msa0550870:intron 40.0%
AATTCATCAGTCATGGGGTA+GGG + chr4_1:46450416-46450435 None:intergenic 40.0%
TGGACATAAGTATTAGCTGC+GGG + chr4_1:46450493-46450512 None:intergenic 40.0%
CTGGACATAAGTATTAGCTG+CGG + chr4_1:46450494-46450513 None:intergenic 40.0%
! AGTGTTACTAAATCAAGCGG+AGG + chr4_1:46450764-46450783 None:intergenic 40.0%
!! GCATGGCCTTGTTTACTTAT+TGG - chr4_1:46450815-46450834 Msa0550870:CDS 40.0%
AGAAAAGTCATTCATGGCGA+GGG + chr4_1:46451030-46451049 None:intergenic 40.0%
AGTTCACTAGGTATATGCTC+TGG + chr4_1:46451237-46451256 None:intergenic 40.0%
GCTGCTGCCAGTATTATAAA+TGG - chr4_1:46451402-46451421 Msa0550870:CDS 40.0%
TCATAGGGTGGGAAAAGTAA+TGG + chr4_1:46451580-46451599 None:intergenic 40.0%
ATCAATAGGGTGGGAAAAGA+AGG - chr4_1:46451721-46451740 Msa0550870:intron 40.0%
!!! ATCAACGTGCACTGCTTTTT+AGG - chr4_1:46451932-46451951 Msa0550870:intron 40.0%
!! GAGCAAAGCTCTAAATGACA+AGG - chr4_1:46451974-46451993 Msa0550870:intron 40.0%
! TTTTCCTTCACCATTCCTTC+AGG - chr4_1:46452008-46452027 Msa0550870:intron 40.0%
TTTCCTTCACCATTCCTTCA+GGG - chr4_1:46452009-46452028 Msa0550870:intron 40.0%
AAATTCCTTCCCTGAAGGAA+TGG + chr4_1:46452021-46452040 None:intergenic 40.0%
! TGAAAGTTCTGATGTGTAGG+TGG - chr4_1:46452158-46452177 Msa0550870:CDS 40.0%
AATGTGCAGATAGACAGCAA+AGG + chr4_1:46452287-46452306 None:intergenic 40.0%
GCATAAATGATTGGGCAGTT+TGG + chr4_1:46452409-46452428 None:intergenic 40.0%
GTATGGAGTAAATCGGAGTT+TGG - chr4_1:46452439-46452458 Msa0550870:intron 40.0%
AGTAAATCGGAGTTTGGCAA+AGG - chr4_1:46452445-46452464 Msa0550870:intron 40.0%
!! CACTGTCTCCTTTGGAATTA+AGG - chr4_1:46452879-46452898 Msa0550870:intron 40.0%
GCCTACTTATTTCGGTAGAA+TGG - chr4_1:46453238-46453257 Msa0550870:intron 40.0%
CCCATTCTACCGAAATAAGT+AGG + chr4_1:46453242-46453261 None:intergenic 40.0%
! ACAGGTTTGCATCGATAACT+CGG - chr4_1:46453348-46453367 Msa0550870:CDS 40.0%
GTACTTTCATGATCCTACTC+AGG - chr4_1:46453595-46453614 Msa0550870:intron 40.0%
CAACGATCCACTACTATGAT+CGG + chr4_1:46453623-46453642 None:intergenic 40.0%
TGCACTGCTAGAAAGACTAT+GGG + chr4_1:46453648-46453667 None:intergenic 40.0%
TTGCACTGCTAGAAAGACTA+TGG + chr4_1:46453649-46453668 None:intergenic 40.0%
! GTCTTTCTAGCAGTGCAATT+AGG - chr4_1:46453651-46453670 Msa0550870:intron 40.0%
! ACACTTGAGGGGGATATTTT+TGG - chr4_1:46453725-46453744 Msa0550870:intron 40.0%
! CACTTGAGGGGGATATTTTT+GGG - chr4_1:46453726-46453745 Msa0550870:intron 40.0%
!!! TTTTTGGGTTCAAGTGTGAG+TGG - chr4_1:46453741-46453760 Msa0550870:intron 40.0%
GATCTCCATCCAAAACCTTA+AGG + chr4_1:46453832-46453851 None:intergenic 40.0%
!!! TAAGGTTTTGGATGGAGATC+TGG - chr4_1:46453832-46453851 Msa0550870:intron 40.0%
TCTTGTTGGTCCATGACATT+GGG - chr4_1:46453865-46453884 Msa0550870:intron 40.0%
TATATTTGCTCATGCAGGCT+GGG - chr4_1:46453981-46454000 Msa0550870:intron 40.0%
CTATGTACACCAGAAAACCA+AGG + chr4_1:46454085-46454104 None:intergenic 40.0%
GATCTGCATCGAGGTAAATT+GGG + chr4_1:46454138-46454157 None:intergenic 40.0%
GGATTTCAATGGGTAAGACT+CGG - chr4_1:46454203-46454222 Msa0550870:intron 40.0%
AAATGCCATTGGGAGATAGA+AGG + chr4_1:46454327-46454346 None:intergenic 40.0%
! TCAATTTTTGCAGCTCAGAC+TGG + chr4_1:46454369-46454388 None:intergenic 40.0%
!!! GGAGCTCCATTTTTAGTTCA+TGG - chr4_1:46454404-46454423 Msa0550870:CDS 40.0%
TGTCGATACAATTCAGTGCT+TGG - chr4_1:46454487-46454506 Msa0550870:CDS 40.0%
ACCAAATAACTATACCCCAG+TGG + chr4_1:46454617-46454636 None:intergenic 40.0%
! TGGGTTCAAAATGGCTTGTA+AGG - chr4_1:46454711-46454730 Msa0550870:CDS 40.0%
! TCATTGATTGTGGATGGGAA+TGG + chr4_1:46454824-46454843 None:intergenic 40.0%
AAAACGAGTGGTCTGTAACG+TGG + chr4_1:46448818-46448837 None:intergenic 45.0%
TCTTCCTTAGAAGGGAAGGT+GGG + chr4_1:46448997-46449016 None:intergenic 45.0%
TTCTTCCTTAGAAGGGAAGG+TGG + chr4_1:46448998-46449017 None:intergenic 45.0%
GTGTTCTTCCTTAGAAGGGA+AGG + chr4_1:46449001-46449020 None:intergenic 45.0%
GATACTGCTGTTGTTGGTCA+AGG - chr4_1:46449292-46449311 Msa0550870:CDS 45.0%
ATCCCAGTCCCCAAAACATA+GGG + chr4_1:46449744-46449763 None:intergenic 45.0%
!! AAGTTAACTTGCCGAGAGAG+CGG - chr4_1:46449771-46449790 Msa0550870:intron 45.0%
! GAGTCGTTGGTTAGTAATGG+CGG - chr4_1:46449830-46449849 Msa0550870:intron 45.0%
TAGTAATGGCGGTGAGAGTA+CGG - chr4_1:46449841-46449860 Msa0550870:intron 45.0%
AAATGTGAGTGTGACCTTGG+TGG - chr4_1:46449879-46449898 Msa0550870:intron 45.0%
!!! CTCCATTGTTTTAGGCTCCA+TGG + chr4_1:46449910-46449929 None:intergenic 45.0%
TGGAGCCTAAAACAATGGAG+TGG - chr4_1:46449910-46449929 Msa0550870:intron 45.0%
GGATGTATACGGGTGTATAC+AGG + chr4_1:46450004-46450023 None:intergenic 45.0%
!! TATTGGGTTAGCATGTGGCT+CGG - chr4_1:46450264-46450283 Msa0550870:intron 45.0%
!!! CGGCGATGCTTTTTTTCACA+AGG - chr4_1:46450284-46450303 Msa0550870:intron 45.0%
!!! TCCAGTTGCGTCCCTTTTTT+TGG - chr4_1:46450353-46450372 Msa0550870:intron 45.0%
!!! CCAGTTGCGTCCCTTTTTTT+GGG - chr4_1:46450354-46450373 Msa0550870:intron 45.0%
CAATTCATCAGTCATGGGGT+AGG + chr4_1:46450417-46450436 None:intergenic 45.0%
CGCAGCTAATACTTATGTCC+AGG - chr4_1:46450492-46450511 Msa0550870:intron 45.0%
!! TTGGTGTTAGATTCGAGGGT+TGG - chr4_1:46450793-46450812 Msa0550870:intron 45.0%
GATCGATTGCTCAAAGTGCA+AGG - chr4_1:46450837-46450856 Msa0550870:CDS 45.0%
GAAAAGTCATTCATGGCGAG+GGG + chr4_1:46451029-46451048 None:intergenic 45.0%
GAGAAAAGTCATTCATGGCG+AGG + chr4_1:46451031-46451050 None:intergenic 45.0%
TAGGCATTAAGAGCAGAGAG+AGG + chr4_1:46451152-46451171 None:intergenic 45.0%
TATACCTAGTGAACTCCCTG+AGG - chr4_1:46451242-46451261 Msa0550870:CDS 45.0%
CAAGACTGCGTGAAAGAATG+TGG + chr4_1:46451347-46451366 None:intergenic 45.0%
CACATTCTTTCACGCAGTCT+TGG - chr4_1:46451345-46451364 Msa0550870:intron 45.0%
TTCCCACCCTATGAGTTTCT+CGG - chr4_1:46451586-46451605 Msa0550870:CDS 45.0%
TATGGGGTGTATATGCCGTT+CGG - chr4_1:46451663-46451682 Msa0550870:CDS 45.0%
GACAGAAATTCCTTCCCTGA+AGG + chr4_1:46452026-46452045 None:intergenic 45.0%
!!! AGCTGTATTCGGGTTGCTTT+TGG - chr4_1:46452746-46452765 Msa0550870:intron 45.0%
!!! GCTGTATTCGGGTTGCTTTT+GGG - chr4_1:46452747-46452766 Msa0550870:intron 45.0%
ACCTGATCAAATGGTCATCC+AGG - chr4_1:46452815-46452834 Msa0550870:CDS 45.0%
TCCTGGATGACCATTTGATC+AGG + chr4_1:46452819-46452838 None:intergenic 45.0%
TGATCAAATGGTCATCCAGG+AGG - chr4_1:46452818-46452837 Msa0550870:CDS 45.0%
CTGGTATGCTCATGTTCGAT+TGG - chr4_1:46453015-46453034 Msa0550870:intron 45.0%
! GTTTGCATCGATAACTCGGA+GGG - chr4_1:46453352-46453371 Msa0550870:CDS 45.0%
GATGTGAGACTCACACTTGA+GGG - chr4_1:46453713-46453732 Msa0550870:intron 45.0%
ATGTGAGACTCACACTTGAG+GGG - chr4_1:46453714-46453733 Msa0550870:intron 45.0%
TCATGGACCAACAAGAGATC+AGG + chr4_1:46453861-46453880 None:intergenic 45.0%
CTCTTGTTGGTCCATGACAT+TGG - chr4_1:46453864-46453883 Msa0550870:intron 45.0%
CAAAAACAGGCCCAATGTCA+TGG + chr4_1:46453878-46453897 None:intergenic 45.0%
TCATGAATGTTGGGGAGTCT+GGG + chr4_1:46453914-46453933 None:intergenic 45.0%
GTATATTTGCTCATGCAGGC+TGG - chr4_1:46453980-46453999 Msa0550870:intron 45.0%
GGATCTGCATCGAGGTAAAT+TGG + chr4_1:46454139-46454158 None:intergenic 45.0%
CAGATCCTATCCAGCAGATA+TGG - chr4_1:46454152-46454171 Msa0550870:CDS 45.0%
GCAAACCATATCTGCTGGAT+AGG + chr4_1:46454160-46454179 None:intergenic 45.0%
! TCCAGCAGATATGGTTTGCA+AGG - chr4_1:46454161-46454180 Msa0550870:CDS 45.0%
! GATATGGTTTGCAAGGCTGT+TGG - chr4_1:46454168-46454187 Msa0550870:CDS 45.0%
ATTCAGTGCTTGGAAACTGC+AGG - chr4_1:46454497-46454516 Msa0550870:CDS 45.0%
GAGTTGTATCGGAAACTGTG+CGG - chr4_1:46454524-46454543 Msa0550870:CDS 45.0%
AGTTGTATCGGAAACTGTGC+GGG - chr4_1:46454525-46454544 Msa0550870:CDS 45.0%
AAGATATACGTTCAAGGCGG+TGG + chr4_1:46454577-46454596 None:intergenic 45.0%
GCCACTGGGGTATAGTTATT+TGG - chr4_1:46454613-46454632 Msa0550870:CDS 45.0%
! TGGCTTGTAAGGTAGGAATG+TGG - chr4_1:46454722-46454741 Msa0550870:exon 45.0%
!! ATTTAATAATATTATACTAT+TGG - chr4_1:46451293-46451312 Msa0550870:intron 5.0%
!! TTTAATAATATTATACTATT+GGG - chr4_1:46451294-46451313 Msa0550870:intron 5.0%
GAAACTCGAAGCGACTGTTC+CGG + chr4_1:46449066-46449085 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG - chr4_1:46449242-46449261 Msa0550870:exon 50.0%
TGCTACTGCCCTTGCTAAAC+AGG - chr4_1:46449494-46449513 Msa0550870:intron 50.0%
!!! CTCCCTATGTTTTGGGGACT+GGG - chr4_1:46449739-46449758 Msa0550870:intron 50.0%
GATCCCAGTCCCCAAAACAT+AGG + chr4_1:46449745-46449764 None:intergenic 50.0%
GCTCTCTCGGCAAGTTAACT+TGG + chr4_1:46449772-46449791 None:intergenic 50.0%
!! AGTTAACTTGCCGAGAGAGC+GGG - chr4_1:46449772-46449791 Msa0550870:intron 50.0%
AAGATCTACTCCCGCTCTCT+CGG + chr4_1:46449785-46449804 None:intergenic 50.0%
CCCAAAAAAAGGGACGCAAC+TGG + chr4_1:46450357-46450376 None:intergenic 50.0%
! GTTAGATTCGAGGGTTGGCA+TGG - chr4_1:46450798-46450817 Msa0550870:intron 50.0%
TACTCCTCAGGGAGTTCACT+AGG + chr4_1:46451249-46451268 None:intergenic 50.0%
AGATTCTTGGGGACCCTTGA+AGG - chr4_1:46451374-46451393 Msa0550870:intron 50.0%
TCCCACCCTATGAGTTTCTC+GGG - chr4_1:46451587-46451606 Msa0550870:CDS 50.0%
ACCCGAGAAACTCATAGGGT+GGG + chr4_1:46451591-46451610 None:intergenic 50.0%
AGTTTCTCGGGTGCCCTATT+CGG - chr4_1:46451599-46451618 Msa0550870:CDS 50.0%
!! CTATTGATTTCTCGCGCGCT+CGG + chr4_1:46451709-46451728 None:intergenic 50.0%
GAGCGCGCGAGAAATCAATA+GGG - chr4_1:46451708-46451727 Msa0550870:intron 50.0%
GCGCGAGAAATCAATAGGGT+GGG - chr4_1:46451712-46451731 Msa0550870:intron 50.0%
CTTCCCTGAAGGAATGGTGA+AGG + chr4_1:46452015-46452034 None:intergenic 50.0%
CTTCACCATTCCTTCAGGGA+AGG - chr4_1:46452013-46452032 Msa0550870:intron 50.0%
ATACCAGCAATGTTCCCTCC+AGG + chr4_1:46453002-46453021 None:intergenic 50.0%
! GGTTTGCATCGATAACTCGG+AGG - chr4_1:46453351-46453370 Msa0550870:CDS 50.0%
! GCGGTTGGTACTTCCATGTA+AGG + chr4_1:46453562-46453581 None:intergenic 50.0%
ACTATGATCGGAGCCTGAGT+AGG + chr4_1:46453611-46453630 None:intergenic 50.0%
TCAGGCTCCGATCATAGTAG+TGG - chr4_1:46453613-46453632 Msa0550870:intron 50.0%
GGATGTGAGACTCACACTTG+AGG - chr4_1:46453712-46453731 Msa0550870:intron 50.0%
TGTGAGACTCACACTTGAGG+GGG - chr4_1:46453715-46453734 Msa0550870:intron 50.0%
CTGGTGTCCTGATCTCTTGT+TGG - chr4_1:46453851-46453870 Msa0550870:intron 50.0%
GGAGCAACGAGAGCAAAAAC+AGG + chr4_1:46453891-46453910 None:intergenic 50.0%
ATGAATGTTGGGGAGTCTGG+GGG + chr4_1:46453912-46453931 None:intergenic 50.0%
CATGAATGTTGGGGAGTCTG+GGG + chr4_1:46453913-46453932 None:intergenic 50.0%
GTCATGAATGTTGGGGAGTC+TGG + chr4_1:46453915-46453934 None:intergenic 50.0%
GCCTTGCAAACCATATCTGC+TGG + chr4_1:46454165-46454184 None:intergenic 50.0%
!!! GGCTGTTGGTTTTCACTTGC+TGG - chr4_1:46454182-46454201 Msa0550870:CDS 50.0%
!! CTGCAGGTGCTGAGTTGTAT+CGG - chr4_1:46454513-46454532 Msa0550870:CDS 50.0%
GTTGTATCGGAAACTGTGCG+GGG - chr4_1:46454526-46454545 Msa0550870:CDS 50.0%
!! TGATCAAGTGTGGTGCCACT+GGG - chr4_1:46454599-46454618 Msa0550870:CDS 50.0%
GTCTGTAACGTGGAATCCGC+GGG + chr4_1:46448808-46448827 None:intergenic 55.0%
GGTCTGTAACGTGGAATCCG+CGG + chr4_1:46448809-46448828 None:intergenic 55.0%
! GGAGGAAACGAAGAGGTACG+TGG + chr4_1:46448976-46448995 None:intergenic 55.0%
GAAGGTGGGAGGAAACGAAG+AGG + chr4_1:46448983-46449002 None:intergenic 55.0%
TCCTCCCACCTTCCCTTCTA+AGG - chr4_1:46448990-46449009 Msa0550870:three_prime_UTR 55.0%
TCCTTAGAAGGGAAGGTGGG+AGG + chr4_1:46448994-46449013 None:intergenic 55.0%
!!! GCTCCCTATGTTTTGGGGAC+TGG - chr4_1:46449738-46449757 Msa0550870:intron 55.0%
! TGACCTTGGTGGCACTTCCA+TGG - chr4_1:46449890-46449909 Msa0550870:intron 55.0%
TTAGGCGCAACAACGCTAGC+AGG - chr4_1:46450310-46450329 Msa0550870:intron 55.0%
TTGGGGACCCTTGAAGGCTT+TGG - chr4_1:46451380-46451399 Msa0550870:intron 55.0%
GCAGCAGCCAAAGCCTTCAA+GGG + chr4_1:46451390-46451409 None:intergenic 55.0%
CACCCGAGAAACTCATAGGG+TGG + chr4_1:46451592-46451611 None:intergenic 55.0%
GGGCACCCGAGAAACTCATA+GGG + chr4_1:46451595-46451614 None:intergenic 55.0%
! AGGGCACCCGAGAAACTCAT+AGG + chr4_1:46451596-46451615 None:intergenic 55.0%
CGAGCGCGCGAGAAATCAAT+AGG - chr4_1:46451707-46451726 Msa0550870:intron 55.0%
CGCGCGAGAAATCAATAGGG+TGG - chr4_1:46451711-46451730 Msa0550870:intron 55.0%
GATTGGGCAGTTTGGGAGAG+AGG + chr4_1:46452401-46452420 None:intergenic 55.0%
CTGGTCACACCTGCAACAGT+CGG - chr4_1:46452976-46452995 Msa0550870:intron 55.0%
ATTTGCTCATGCAGGCTGGG+CGG - chr4_1:46453984-46454003 Msa0550870:intron 55.0%
GCTGGATAGGATCTGCATCG+AGG + chr4_1:46454147-46454166 None:intergenic 55.0%
! GGGAGATAGAAGGCGCAGAA+GGG + chr4_1:46454317-46454336 None:intergenic 55.0%
! TGGGAGATAGAAGGCGCAGA+AGG + chr4_1:46454318-46454337 None:intergenic 55.0%
CTGCGCCTTCTATCTCCCAA+TGG - chr4_1:46454319-46454338 Msa0550870:CDS 55.0%
TCGGAAACTGTGCGGGGAAA+TGG - chr4_1:46454532-46454551 Msa0550870:CDS 55.0%
CGGAAACTGTGCGGGGAAAT+GGG - chr4_1:46454533-46454552 Msa0550870:CDS 55.0%
GGAAACTGTGCGGGGAAATG+GGG - chr4_1:46454534-46454553 Msa0550870:CDS 55.0%
GAAACTGTGCGGGGAAATGG+GGG - chr4_1:46454535-46454554 Msa0550870:CDS 55.0%
!! GTGATCAAGTGTGGTGCCAC+TGG - chr4_1:46454598-46454617 Msa0550870:CDS 55.0%
!! GATCAAGTGTGGTGCCACTG+GGG - chr4_1:46454600-46454619 Msa0550870:CDS 55.0%
!! GCTCCATGGAAGTGCCACCA+AGG + chr4_1:46449896-46449915 None:intergenic 60.0%
GGCAGCAGCCAAAGCCTTCA+AGG + chr4_1:46451391-46451410 None:intergenic 60.0%
ATGGGATTGCTGGGGCTGCA+TGG - chr4_1:46451460-46451479 Msa0550870:intron 60.0%
TGGGATTGCTGGGGCTGCAT+GGG - chr4_1:46451461-46451480 Msa0550870:intron 60.0%
! TGGGGCTGCATGGGCTACAT+TGG - chr4_1:46451470-46451489 Msa0550870:intron 60.0%
! GACAGGCTCGGTCGCTTCTA+AGG - chr4_1:46452706-46452725 Msa0550870:intron 60.0%
TTTGCTCATGCAGGCTGGGC+GGG - chr4_1:46453985-46454004 Msa0550870:intron 60.0%
TGCGGGGAAATGGGGGATGT+GGG - chr4_1:46454542-46454561 Msa0550870:CDS 60.0%
! GAAGCGACTGTTCCGGCTCG+AGG + chr4_1:46449059-46449078 None:intergenic 65.0%
CACACCTGCAACAGTCGGCC+TGG - chr4_1:46452981-46453000 Msa0550870:intron 65.0%
ACCTGCAACAGTCGGCCTGG+AGG - chr4_1:46452984-46453003 Msa0550870:intron 65.0%
CCTGCAACAGTCGGCCTGGA+GGG - chr4_1:46452985-46453004 Msa0550870:intron 65.0%
CGGCCTGGAGGGAACATTGC+TGG - chr4_1:46452996-46453015 Msa0550870:intron 65.0%
GTGCGGGGAAATGGGGGATG+TGG - chr4_1:46454541-46454560 Msa0550870:CDS 65.0%
!! CTCGCGCGCTCGGTGCAGTT+TGG + chr4_1:46451699-46451718 None:intergenic 70.0%
CCCTCCAGGCCGACTGTTGC+AGG + chr4_1:46452988-46453007 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46448794 46454848 46448794 ID=Msa0550870;Name=Msa0550870
chr4_1 mRNA 46448794 46454848 46448794 ID=Msa0550870-mRNA-1;Parent=Msa0550870;Name=Msa0550870-mRNA-1;_AED=0.33;_eAED=0.33;_QI=117|0.91|1|1|1|1|13|449|523
chr4_1 exon 46448794 46449344 46448794 ID=Msa0550870-mRNA-1:exon:12543;Parent=Msa0550870-mRNA-1
chr4_1 exon 46449428 46449487 46449428 ID=Msa0550870-mRNA-1:exon:12542;Parent=Msa0550870-mRNA-1
chr4_1 exon 46450625 46450702 46450625 ID=Msa0550870-mRNA-1:exon:12541;Parent=Msa0550870-mRNA-1
chr4_1 exon 46450803 46450931 46450803 ID=Msa0550870-mRNA-1:exon:12540;Parent=Msa0550870-mRNA-1
chr4_1 exon 46451176 46451286 46451176 ID=Msa0550870-mRNA-1:exon:12539;Parent=Msa0550870-mRNA-1
chr4_1 exon 46451397 46451465 46451397 ID=Msa0550870-mRNA-1:exon:12538;Parent=Msa0550870-mRNA-1
chr4_1 exon 46451551 46451688 46451551 ID=Msa0550870-mRNA-1:exon:12537;Parent=Msa0550870-mRNA-1
chr4_1 exon 46452142 46452280 46452142 ID=Msa0550870-mRNA-1:exon:12536;Parent=Msa0550870-mRNA-1
chr4_1 exon 46452784 46452839 46452784 ID=Msa0550870-mRNA-1:exon:12535;Parent=Msa0550870-mRNA-1
chr4_1 exon 46453129 46453184 46453129 ID=Msa0550870-mRNA-1:exon:12534;Parent=Msa0550870-mRNA-1
chr4_1 exon 46453311 46453419 46453311 ID=Msa0550870-mRNA-1:exon:12533;Parent=Msa0550870-mRNA-1
chr4_1 exon 46454127 46454221 46454127 ID=Msa0550870-mRNA-1:exon:12532;Parent=Msa0550870-mRNA-1
chr4_1 exon 46454302 46454848 46454302 ID=Msa0550870-mRNA-1:exon:12531;Parent=Msa0550870-mRNA-1
chr4_1 five_prime_UTR 46454732 46454848 46454732 ID=Msa0550870-mRNA-1:five_prime_utr;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46454302 46454731 46454302 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46454127 46454221 46454127 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46453311 46453419 46453311 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46453129 46453184 46453129 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46452784 46452839 46452784 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46452142 46452280 46452142 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46451551 46451688 46451551 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46451397 46451465 46451397 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46451176 46451286 46451176 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46450803 46450931 46450803 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46450625 46450702 46450625 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46449428 46449487 46449428 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 CDS 46449243 46449344 46449243 ID=Msa0550870-mRNA-1:cds;Parent=Msa0550870-mRNA-1
chr4_1 three_prime_UTR 46448794 46449242 46448794 ID=Msa0550870-mRNA-1:three_prime_utr;Parent=Msa0550870-mRNA-1
Gene Sequence

>Msa0550870

ATGGCACAAAAACTTTCACTACACTTCAATCACACTCTTCACACTTCACTACACTTGAATCGCCACGTACCTCTTCGTTTCCTCCCACCTTCCCTTCTAAGGAAGAACACTACTATCCATTCACCAAACCAATGCATTATTATATCCTCGAGCCGGAACAGTCGCTTCGAGTTTCTAACAGCTTGCTCAGTTCAAAATTACGATGCTATAGATGAAGCCGAAGAAAAAGACCAAATCAGCGAGGTTTCTTCTAAAGAAGAAGAAGAAGAAGAAGTGAAGGAACTGGTTGAGCAGAGTATATGGATTCAGATGAAGGAAATTGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGTGGACCATTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGTGATTATTTGGGCTACTCTTTTATGTTTCTATCGATTGCTACTTCGAATATGGTTGCTACTGCCCTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTTATTGGGTTAGCATGTGGCTCGGCGATGCTTTTTTTCACAAGGTTATTAGGCGCAACAACGCTAGCAGCTTTTACTGGATCAAAGAATGTACATCTAGTACCCGCAGCTAATACTTATGTCCAGATTCGAGGGTTGGCATGGCCTTGTTTACTTATTGGATCGATTGCTCAAAGTGCAAGTCTTGGTATGAAAGATTCTTGGGGACCCTTGAAGGCTTTGGCTGCTGCCAGTATTATAAATGGAATTGGTGATATAGTTCTGTGCAGATATTTAAACTATGGGATTGCTGGGGCTGCATGGGCTACATTGGCATCCCAAGTCGTTGCTGCGTATATGATGAGCAAAGCTCTAAATGACAAGGGATACAATGCATTTTCCTTCACCATTCCTTCAGGGAAGGAATTTCTGTCAATATTTAGTCTTGCTGCTCCTGTATTTGTGACATTGATGTTAAAGGTGGCTTTCTACTCTCTAATTATATATTTTGCTACATCAATGGGTACAAATAAAATAGCTGCTCATCAAGTCATGCTTCAGGTCTACATGTTATGCGCAATATGTGGTGAACCTCTCTCCCAAACTGCCCAATCATTTATGCCTGAGTTGATGTATGGAGTAAATCGGAGTTTGGCAAAGGCTCGGTCGCTTCTAAGGTCTCTTCTAACTATTGGAGCTGTATTCGGGTTGCTTTTGGGTATTGTTGTAACATCTGTTACTTGGTTATTCCCCTACATTTTTACACCTGATCAAATGGTCATCCAGGAGATGCATAGGATTCTGATTCCATTCTTTTTAGCACTACTGGTCACACCTGCAACAGTCGGCCTGGAGGGAACATTGCTGATCCTATCCAGCAGATATGGTTTGCAAGGCTGTTGGTTTTCACTTGCTGGATTTCAATGGGTTCGGTTTTCATCGGCCCTTCTGCGCCTTCTATCTCCCAATGGCATTTTATACTCGGAAGATATAAGCCAGTCTGAGCTGCAAAAATTGAAGACTGCATAA

Protein sequence

>Msa0550870

MAQKLSLHFNHTLHTSLHLNRHVPLRFLPPSLLRKNTTIHSPNQCIIISSSRNSRFEFLTACSVQNYDAIDEAEEKDQISEVSSKEEEEEEVKELVEQSIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYSFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLACGSAMLFFTRLLGATTLAAFTGSKNVHLVPAANTYVQIRGLAWPCLLIGSIAQSASLGMKDSWGPLKALAAASIINGIGDIVLCRYLNYGIAGAAWATLASQVVAAYMMSKALNDKGYNAFSFTIPSGKEFLSIFSLAAPVFVTLMLKVAFYSLIIYFATSMGTNKIAAHQVMLQVYMLCAICGEPLSQTAQSFMPELMYGVNRSLAKARSLLRSLLTIGAVFGLLLGIVVTSVTWLFPYIFTPDQMVIQEMHRILIPFFLALLVTPATVGLEGTLLILSSRYGLQGCWFSLAGFQWVRFSSALLRLLSPNGILYSEDISQSELQKLKTA*