AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0022960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022960 MtrunA17_Chr1g0176251 91.837 392 15 2 1 375 1 392 0.0 688
Msa0022960 MtrunA17_Chr4g0072191 29.750 400 223 13 20 375 25 410 7.05e-37 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0022960 AT3G11945.1 64.975 394 111 5 1 375 1 386 3.92e-171 483
Msa0022960 AT3G11945.2 62.972 397 121 6 1 375 1 393 1.57e-164 466
Msa0022960 AT2G18950.1 34.539 304 170 8 95 375 95 392 2.36e-39 144
Msa0022960 AT2G18950.2 35.088 228 121 7 95 299 95 318 2.11e-26 107

Find 78 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAGCAACTGCTGCATTTC+TGG 0.132428 1_1:+43450005 None:intergenic
CCAAACCGTTTGGAAGATTT+TGG 0.150033 1_1:+43455328 None:intergenic
TCGACCTTTGCTACAAAATT+AGG 0.197774 1_1:-43452014 Msa0022960:CDS
GGTGTTGTTGACAGGCTTTC+AGG 0.223817 1_1:-43451830 Msa0022960:intron
AACATTTCTTTCCTTGGTTC+TGG 0.229462 1_1:-43451984 Msa0022960:CDS
GGAATTCCATGTGGGAATTA+TGG 0.238319 1_1:+43455399 None:intergenic
TCCAAACGGTTTGGTTCAAT+TGG 0.282213 1_1:-43455319 Msa0022960:CDS
AATAGATAGTACCAAGAAAA+AGG 0.306759 1_1:+43452763 None:intergenic
TCTATTCTGTTCCTCCTCTT+AGG 0.307364 1_1:-43452746 Msa0022960:CDS
CATATAAATTGCTGCCAATA+TGG 0.320084 1_1:+43451935 None:intergenic
AGTGTTGCTTCAGCTCCTTA+TGG 0.337423 1_1:-43455461 Msa0022960:exon
TGCAGTGAAGTTGGAGCTGC+TGG 0.338973 1_1:-43453870 Msa0022960:CDS
ACAACATACCCTGATGGAAA+TGG 0.357216 1_1:+43455231 None:intergenic
CCCTATCGTTTACAGTGCTT+TGG 0.371902 1_1:-43453667 Msa0022960:intron
TGTGGGAATGGTTATATAGT+TGG 0.378890 1_1:-43453561 Msa0022960:CDS
CCAAAATCTTCCAAACGGTT+TGG 0.382677 1_1:-43455328 Msa0022960:CDS
GTTCGGAACATTTCTTTCCT+TGG 0.385731 1_1:-43451990 Msa0022960:CDS
TGCTTCAAGCTTGGTTTACC+AGG 0.392392 1_1:-43451775 Msa0022960:intron
CCCAATTGAACCAAACCGTT+TGG 0.399938 1_1:+43455318 None:intergenic
ACTATCCGTGGTACAGCATT+AGG 0.405007 1_1:-43453777 Msa0022960:CDS
GAACTATGTTGTTACCATAT+TGG 0.406125 1_1:-43451949 Msa0022960:CDS
ATGTTGCAGGAAGCAATATC+AGG 0.410158 1_1:-43450133 Msa0022960:intron
ATAATAAGAAATGCTGCAAC+AGG 0.417997 1_1:+43452711 None:intergenic
TCTAAAACTTTGTCAGCAAA+TGG 0.421719 1_1:+43453837 None:intergenic
TGCAATATTTGCTTCAAGCT+TGG 0.427441 1_1:-43451784 Msa0022960:CDS
TTGCTACAAAATTAGGAGTT+CGG 0.428806 1_1:-43452007 Msa0022960:CDS
CTACGATCTCCTTCAACATC+TGG 0.428942 1_1:+43452205 None:intergenic
CAGGATTCTATCGATTCATA+TGG 0.434066 1_1:-43450114 Msa0022960:CDS
GAGCTGAAGCAACACTCAAC+TGG 0.434312 1_1:+43455468 None:intergenic
CTTGTCTTGAAAGCACTCTC+TGG 0.434396 1_1:-43453600 Msa0022960:CDS
CAACATACCCTGATGGAAAT+GGG 0.440583 1_1:+43455232 None:intergenic
TTTGCTCTGATTTGTGGGAA+TGG 0.449050 1_1:-43453573 Msa0022960:CDS
GTTGACAGGCTTTCAGGAGA+TGG 0.469985 1_1:-43451824 Msa0022960:intron
CCAAACGGTTTGGTTCAATT+GGG 0.472071 1_1:-43455318 Msa0022960:CDS
ATCTTTAAAGCACTAGGATC+CGG 0.472726 1_1:+43449958 None:intergenic
AGTGTAAACCCATTTCCATC+AGG 0.473401 1_1:-43455240 Msa0022960:CDS
GCCGGTCAATAAAACAAATC+CGG 0.479097 1_1:-43449977 Msa0022960:three_prime_UTR
AAAGATCTTCCAGATGTTGA+AGG 0.481104 1_1:-43452214 Msa0022960:CDS
AGCATTTCTTATTATTGCTA+CGG 0.484068 1_1:-43452703 Msa0022960:intron
TTGACTGTAGGATTGAACTT+TGG 0.504190 1_1:-43452816 Msa0022960:CDS
AGCAGCTCCAACTTCACTGC+AGG 0.512238 1_1:+43453872 None:intergenic
AGAACTCAAATCTGATAAAG+TGG 0.515201 1_1:-43453626 Msa0022960:CDS
GGATCCTAGTGCTTTAAAGA+TGG 0.520472 1_1:-43449956 Msa0022960:three_prime_UTR
TGAAGGTGTTCTTGCTGATG+TGG 0.522835 1_1:+43455516 None:intergenic
GGCAGCAATTTATATGCCAC+AGG 0.528952 1_1:-43451928 Msa0022960:intron
AAGAAGTAGAGAGCTCCATA+AGG 0.529817 1_1:+43455446 None:intergenic
ACTGCTGCATTTCTGGATGC+AGG 0.532740 1_1:+43450012 None:intergenic
AGCAGTTGCTCTACCAAAGC+CGG 0.539951 1_1:-43449995 Msa0022960:three_prime_UTR
GAAGGTGTTCTTGCTGATGT+GGG 0.543264 1_1:+43455517 None:intergenic
AGTTGTGGACTTAGCTGAAG+TGG 0.543496 1_1:+43455351 None:intergenic
CAACTCCAAAATCTTCCAAA+CGG 0.544220 1_1:-43455333 Msa0022960:CDS
GCAGCTGGCCTCTTGACTGT+AGG 0.546042 1_1:-43452828 Msa0022960:CDS
TACGCCACTAGAGCTGCTCT+TGG 0.549187 1_1:-43452534 Msa0022960:CDS
AAGTCCAAGAGCAGCTCTAG+TGG 0.553924 1_1:+43452530 None:intergenic
GGAAAGCGTTTCATCCTAAG+AGG 0.554033 1_1:+43452732 None:intergenic
GACACACAAACGTTTGATGA+AGG 0.556344 1_1:+43455499 None:intergenic
TGAACCATCTTTAAAGCACT+AGG 0.563058 1_1:+43449952 None:intergenic
ATCTACCTGCAGCTCTCCTG+TGG 0.565966 1_1:-43452287 Msa0022960:intron
ATCAATCAAATATATGACAT+TGG 0.566344 1_1:-43453537 Msa0022960:CDS
AGCATAGTTTGCTAGATGAA+AGG 0.578142 1_1:+43450061 None:intergenic
TTGCAGGCCTGCAGTGAAGT+TGG 0.583928 1_1:-43453879 Msa0022960:intron
GAAGCAAATATTGCATGAGC+TGG 0.584720 1_1:+43451792 None:intergenic
GCCGTTGTATACAATTCTCA+TGG 0.585431 1_1:+43449815 None:intergenic
CACATTCCATAATTCCCACA+TGG 0.597325 1_1:-43455405 Msa0022960:CDS
AGAAACTTGTGTGATGATGA+TGG 0.601149 1_1:+43455290 None:intergenic
GCTGTACCACGGATAGTATG+TGG 0.609127 1_1:+43453783 None:intergenic
GTTGTGGACTTAGCTGAAGT+GGG 0.621747 1_1:+43455352 None:intergenic
GTGTAAACCCATTTCCATCA+GGG 0.626735 1_1:-43455239 Msa0022960:intron
TTAAGGCCACATACTATCCG+TGG 0.626803 1_1:-43453789 Msa0022960:CDS
AAGGTGTTCTTGCTGATGTG+GGG 0.629637 1_1:+43455518 None:intergenic
AGTTCAATCCTACAGTCAAG+AGG 0.630775 1_1:+43452820 None:intergenic
TCAGCAAAATTCCAGAACCA+AGG 0.633793 1_1:+43451973 None:intergenic
GTGGACTTAGCTGAAGTGGG+TGG 0.649212 1_1:+43455355 None:intergenic
AAGCGTTTCATCCTAAGAGG+AGG 0.659642 1_1:+43452735 None:intergenic
CAGATGTTGAAGGAGATCGT+AGG 0.666387 1_1:-43452204 Msa0022960:intron
GCCATGAGAATTGTATACAA+CGG 0.669269 1_1:-43449816 Msa0022960:three_prime_UTR
AAGTGACTTATGCAGGTACG+AGG 0.680664 1_1:-43452582 Msa0022960:intron
AAGAACCTAATGCTGTACCA+CGG 0.731271 1_1:+43453772 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATATTTGTTTTCAAAA+TGG - chr1_1:43453684-43453703 Msa0022960:intron 10.0%
!! TTGAAAAATAACATTAAATA+TGG - chr1_1:43454605-43454624 Msa0022960:intron 10.0%
!!! GTGATTTTTTTGAAATTTTT+TGG - chr1_1:43450180-43450199 Msa0022960:intron 15.0%
!!! ATTTTTTTGAAATTTTTTGG+TGG - chr1_1:43450183-43450202 Msa0022960:intron 15.0%
!!! TTTTTTTGAAATTTTTTGGT+GGG - chr1_1:43450184-43450203 Msa0022960:intron 15.0%
!! ATTAAAACCTACTTATATAA+CGG - chr1_1:43450844-43450863 Msa0022960:intron 15.0%
!! TGAAATATAAGAATAACTTA+GGG + chr1_1:43452410-43452429 None:intergenic 15.0%
!! ATGAAATATAAGAATAACTT+AGG + chr1_1:43452411-43452430 None:intergenic 15.0%
!!! TATTCTTATATTTCATTTTC+AGG - chr1_1:43452415-43452434 Msa0022960:intron 15.0%
!!! ATTCTTATATTTCATTTTCA+GGG - chr1_1:43452416-43452435 Msa0022960:intron 15.0%
!! ATAACAGAAAATGATAAATA+AGG + chr1_1:43453665-43453684 None:intergenic 15.0%
!!! GATTTATTTTCTTATATTTC+AGG - chr1_1:43453856-43453875 Msa0022960:CDS 15.0%
!!! TATTGATTTATCATTAATGT+GGG + chr1_1:43454269-43454288 None:intergenic 15.0%
!!! TTATTGATTTATCATTAATG+TGG + chr1_1:43454270-43454289 None:intergenic 15.0%
!! TTTAATTACTTTGATCTTTC+AGG - chr1_1:43450488-43450507 Msa0022960:intron 20.0%
!! TTTAAAAACAACTAATGTAC+TGG + chr1_1:43450593-43450612 None:intergenic 20.0%
!!! ATTTGTCTATTTGTCTTTTT+AGG + chr1_1:43451159-43451178 None:intergenic 20.0%
!!! TAATCACTAAATATTTTCTG+TGG - chr1_1:43451237-43451256 Msa0022960:intron 20.0%
!! AAAAAAATTGAAGTAACCAA+CGG + chr1_1:43451361-43451380 None:intergenic 20.0%
!! ATCAATCAAATATATGACAT+TGG - chr1_1:43451807-43451826 Msa0022960:CDS 20.0%
!!! ACTGTACAATTTTTCATTTT+AGG - chr1_1:43452074-43452093 Msa0022960:intron 20.0%
!! TGAAAAATTGAACTAAAATG+AGG + chr1_1:43452128-43452147 None:intergenic 20.0%
!! TGTATCATGTATATGTAATA+TGG - chr1_1:43453273-43453292 Msa0022960:intron 20.0%
!! TGCATGTAATAATTAATTAC+AGG - chr1_1:43453298-43453317 Msa0022960:intron 20.0%
!!! TAAGGTTTATTTTCAAATGT+AGG + chr1_1:43453484-43453503 None:intergenic 20.0%
!! TGAAACTTCTTAGTATAATT+AGG - chr1_1:43453732-43453751 Msa0022960:intron 20.0%
!! AGAAAAAGCAAATTATACAA+AGG - chr1_1:43453889-43453908 Msa0022960:intron 20.0%
!!! ATATGTTATCATCTTTTGTA+TGG - chr1_1:43453915-43453934 Msa0022960:intron 20.0%
!! TAAAACAAACAGAAGAAAAA+TGG + chr1_1:43454123-43454142 None:intergenic 20.0%
!! GAAATTGTACTTTATTCTAT+TGG - chr1_1:43454199-43454218 Msa0022960:intron 20.0%
!! ATTAATTAGAAGTAAACCTT+CGG + chr1_1:43454785-43454804 None:intergenic 20.0%
!! TTTGAAAGAGTAGTAGTTTT+TGG + chr1_1:43449969-43449988 None:intergenic 25.0%
! ATAACTACTTCACTTATGAT+TGG + chr1_1:43450360-43450379 None:intergenic 25.0%
! TTTGATCTTTCAGGAAAATT+TGG - chr1_1:43450497-43450516 Msa0022960:intron 25.0%
! CAATTGAAATGTAATGGTAA+TGG - chr1_1:43450892-43450911 Msa0022960:intron 25.0%
!!! AACGAATTTTTTTATCGAAG+TGG - chr1_1:43451076-43451095 Msa0022960:intron 25.0%
!!! TCAATGCTCAGATTTTTTAT+GGG + chr1_1:43451299-43451318 None:intergenic 25.0%
!!! TTCAATGCTCAGATTTTTTA+TGG + chr1_1:43451300-43451319 None:intergenic 25.0%
! TTGAATCAAAACCAAAAGTA+GGG + chr1_1:43451420-43451439 None:intergenic 25.0%
! ATTGAATCAAAACCAAAAGT+AGG + chr1_1:43451421-43451440 None:intergenic 25.0%
!!! TAGATTTTAAAGATGCATTC+TGG - chr1_1:43451526-43451545 Msa0022960:intron 25.0%
! AGTGCTATCATAATGTATTT+GGG + chr1_1:43452151-43452170 None:intergenic 25.0%
! TAGTGCTATCATAATGTATT+TGG + chr1_1:43452152-43452171 None:intergenic 25.0%
!! TATTAGTCTATGAATCTGTT+TGG - chr1_1:43452170-43452189 Msa0022960:intron 25.0%
! TCAAATAAGTCAATTCAAAC+AGG - chr1_1:43452384-43452403 Msa0022960:intron 25.0%
! GAGTAAAGCGAAAAAATAAA+AGG + chr1_1:43452555-43452574 None:intergenic 25.0%
! AATAGATAGTACCAAGAAAA+AGG + chr1_1:43452584-43452603 None:intergenic 25.0%
! AGCATTTCTTATTATTGCTA+CGG - chr1_1:43452641-43452660 Msa0022960:intron 25.0%
! ATGTTTGAATCTCTTATCAT+TGG - chr1_1:43453457-43453476 Msa0022960:intron 25.0%
! AATAAACCTTATGTAAGTTG+TGG - chr1_1:43453493-43453512 Msa0022960:intron 25.0%
!!! ATTTTGGAAAAATAAAGACG+GGG + chr1_1:43453801-43453820 None:intergenic 25.0%
!!! CATTTTGGAAAAATAAAGAC+GGG + chr1_1:43453802-43453821 None:intergenic 25.0%
!!! GCATTTTGGAAAAATAAAGA+CGG + chr1_1:43453803-43453822 None:intergenic 25.0%
!!! TGTTTTGAAAACTCAAAAGA+TGG - chr1_1:43453962-43453981 Msa0022960:intron 25.0%
! TGATGTATATCATATGTAGT+CGG + chr1_1:43454015-43454034 None:intergenic 25.0%
!! AACTATGCTACATTTTTACT+TGG - chr1_1:43455297-43455316 Msa0022960:CDS 25.0%
!!! TAGTTTTTGGAATTCCATGT+GGG + chr1_1:43449956-43449975 None:intergenic 30.0%
AGTTCATGGAAAATTCAGAA+AGG - chr1_1:43450218-43450237 Msa0022960:intron 30.0%
AAAATTCAGAAAGGTTGAGA+AGG - chr1_1:43450227-43450246 Msa0022960:intron 30.0%
AAAGGTTGAGAAGGAATAAT+GGG - chr1_1:43450236-43450255 Msa0022960:intron 30.0%
! GATTAGTTGACAGTCAAAAA+CGG + chr1_1:43450333-43450352 None:intergenic 30.0%
ACTGATACCCGATATAAATA+CGG + chr1_1:43450632-43450651 None:intergenic 30.0%
TTTGCTTCCGTTATATAAGT+AGG + chr1_1:43450854-43450873 None:intergenic 30.0%
!! GTAATGGTAATGGTTTCAAA+TGG - chr1_1:43450902-43450921 Msa0022960:intron 30.0%
!!! GATTTTTTATGGGTATCATG+CGG + chr1_1:43451289-43451308 None:intergenic 30.0%
!! AACACTTTTTACCCTACTTT+TGG - chr1_1:43451406-43451425 Msa0022960:intron 30.0%
GTTTAAATTGAAATGCTTGC+AGG - chr1_1:43451449-43451468 Msa0022960:intron 30.0%
! TCTAAAACTTTGTCAGCAAA+TGG + chr1_1:43451510-43451529 None:intergenic 30.0%
!! ATGCATTCTGGAGATTTTTA+AGG - chr1_1:43451538-43451557 Msa0022960:intron 30.0%
AGAACTCAAATCTGATAAAG+TGG - chr1_1:43451718-43451737 Msa0022960:intron 30.0%
AATAAGCTGAAAACAGTTGA+TGG - chr1_1:43452293-43452312 Msa0022960:intron 30.0%
!!! ATTTTTTCGCTTTACTCCTT+CGG - chr1_1:43452558-43452577 Msa0022960:CDS 30.0%
ATAATAAGAAATGCTGCAAC+AGG + chr1_1:43452636-43452655 None:intergenic 30.0%
! ACAGTTAGTAAAGTACCATT+TGG - chr1_1:43452722-43452741 Msa0022960:CDS 30.0%
AAAGTTGTGATAAAAACCAC+AGG + chr1_1:43453076-43453095 None:intergenic 30.0%
! TTTCGTAACATTTTTCGCAT+TGG - chr1_1:43453093-43453112 Msa0022960:intron 30.0%
! TTTGGAATCATGTTGCATTA+AGG - chr1_1:43453168-43453187 Msa0022960:intron 30.0%
TTGGAATCATGTTGCATTAA+GGG - chr1_1:43453169-43453188 Msa0022960:intron 30.0%
ATACACCAACAAATAAAGAG+TGG + chr1_1:43453258-43453277 None:intergenic 30.0%
! AACTCCTAATTTTGTAGCAA+AGG + chr1_1:43453337-43453356 None:intergenic 30.0%
TTGCTACAAAATTAGGAGTT+CGG - chr1_1:43453337-43453356 Msa0022960:intron 30.0%
GAACTATGTTGTTACCATAT+TGG - chr1_1:43453395-43453414 Msa0022960:intron 30.0%
CATATAAATTGCTGCCAATA+TGG + chr1_1:43453412-43453431 None:intergenic 30.0%
TGATCATATCACATTCCATA+CGG + chr1_1:43453630-43453649 None:intergenic 30.0%
! CAACTTATTAACGTGCATTT+TGG + chr1_1:43453817-43453836 None:intergenic 30.0%
GTTACAAGAATCGAAAATCA+AGG + chr1_1:43453989-43454008 None:intergenic 30.0%
GATGTATATCATATGTAGTC+GGG + chr1_1:43454014-43454033 None:intergenic 30.0%
!! TTACTTCTTTTAGGGATTGA+AGG - chr1_1:43454069-43454088 Msa0022960:intron 30.0%
!!! CTTCTGTTTGTTTTAGATTC+TGG - chr1_1:43454128-43454147 Msa0022960:intron 30.0%
! CCTTTAGTAAAAAGTGCATT+GGG + chr1_1:43454180-43454199 None:intergenic 30.0%
! TCCTTTAGTAAAAAGTGCAT+TGG + chr1_1:43454181-43454200 None:intergenic 30.0%
! CACAAAACAGTGTTGTTAAA+TGG - chr1_1:43454379-43454398 Msa0022960:intron 30.0%
! AAAACAGTGTTGTTAAATGG+CGG - chr1_1:43454382-43454401 Msa0022960:intron 30.0%
! TATGTAAGTGTTGTAGATAG+CGG + chr1_1:43454528-43454547 None:intergenic 30.0%
AAGATAAAACAAAGTGAAGC+TGG - chr1_1:43454966-43454985 Msa0022960:intron 30.0%
TAAAAGTGAGCTTACGAAAA+CGG + chr1_1:43455073-43455092 None:intergenic 30.0%
ATATTGCTTGATTAAGTGTC+TGG - chr1_1:43455183-43455202 Msa0022960:intron 30.0%
!!! GTAGTTTTTGGAATTCCATG+TGG + chr1_1:43449957-43449976 None:intergenic 35.0%
!!! TTTGGAAGATTTTGGAGTTG+TGG + chr1_1:43450011-43450030 None:intergenic 35.0%
CAACTCCAAAATCTTCCAAA+CGG - chr1_1:43450011-43450030 Msa0022960:three_prime_UTR 35.0%
! AGAAACTTGTGTGATGATGA+TGG + chr1_1:43450057-43450076 None:intergenic 35.0%
CAAAAAACAACATACCCTGA+TGG + chr1_1:43450122-43450141 None:intergenic 35.0%
!! GGGTTTTGATAAGTAGTTCA+TGG - chr1_1:43450204-43450223 Msa0022960:intron 35.0%
GAAAGGTTGAGAAGGAATAA+TGG - chr1_1:43450235-43450254 Msa0022960:intron 35.0%
AAGGTTGAGAAGGAATAATG+GGG - chr1_1:43450237-43450256 Msa0022960:intron 35.0%
ATAAATACGGGTACGAGATA+CGG + chr1_1:43450619-43450638 None:intergenic 35.0%
TCTCGTACCCGTATTTATAT+CGG - chr1_1:43450621-43450640 Msa0022960:intron 35.0%
CTGATACCCGATATAAATAC+GGG + chr1_1:43450631-43450650 None:intergenic 35.0%
TTTATATCGGGTATCAGTAC+CGG - chr1_1:43450634-43450653 Msa0022960:intron 35.0%
! GTGCAACATAGACAGATTTT+AGG - chr1_1:43450667-43450686 Msa0022960:intron 35.0%
TAGAATTGAAGCTTGAACTC+TGG - chr1_1:43450734-43450753 Msa0022960:intron 35.0%
GGTCGTCAATTGAAATGTAA+TGG - chr1_1:43450886-43450905 Msa0022960:intron 35.0%
! ATCTCAATTTTCCTTGCCAA+TGG + chr1_1:43451054-43451073 None:intergenic 35.0%
ATTGTGACAATCACAATCCA+GGG + chr1_1:43451204-43451223 None:intergenic 35.0%
TCGTCGAATTTATTGATGCT+AGG - chr1_1:43451382-43451401 Msa0022960:intron 35.0%
!! GTCTTTTTGCTCTGATTTGT+GGG - chr1_1:43451766-43451785 Msa0022960:intron 35.0%
TGTGGGAATGGTTATATAGT+TGG - chr1_1:43451783-43451802 Msa0022960:CDS 35.0%
ATTAGCAAGAAATGTGCAAG+AGG + chr1_1:43452024-43452043 None:intergenic 35.0%
CTTATTTCAGTAAGCTCTTC+AGG + chr1_1:43452279-43452298 None:intergenic 35.0%
AAGCACTTGTGAGATTGTTT+GGG + chr1_1:43452348-43452367 None:intergenic 35.0%
TAAGCACTTGTGAGATTGTT+TGG + chr1_1:43452349-43452368 None:intergenic 35.0%
TTGACTGTAGGATTGAACTT+TGG - chr1_1:43452528-43452547 Msa0022960:CDS 35.0%
CAAAGATTGGGAAAAAAAGG+AGG + chr1_1:43452677-43452696 None:intergenic 35.0%
GTGCAAAGATTGGGAAAAAA+AGG + chr1_1:43452680-43452699 None:intergenic 35.0%
GTCAATCTTGTTCATCCAAA+TGG + chr1_1:43452740-43452759 None:intergenic 35.0%
! CGAGGTTTTCTACTTAACTT+TGG - chr1_1:43452780-43452799 Msa0022960:CDS 35.0%
AGTGGCTATTGTTTGATTAG+AGG - chr1_1:43452920-43452939 Msa0022960:intron 35.0%
CTATTGTTTGATTAGAGGCT+CGG - chr1_1:43452925-43452944 Msa0022960:intron 35.0%
ACAAGAACAAACGCATAAGT+TGG + chr1_1:43453035-43453054 None:intergenic 35.0%
AAAGATCTTCCAGATGTTGA+AGG - chr1_1:43453130-43453149 Msa0022960:intron 35.0%
ATTAAGGGTTGCAAGTTCAT+TGG - chr1_1:43453184-43453203 Msa0022960:intron 35.0%
! TGCTACCACTCTTTATTTGT+TGG - chr1_1:43453250-43453269 Msa0022960:intron 35.0%
TCGACCTTTGCTACAAAATT+AGG - chr1_1:43453330-43453349 Msa0022960:intron 35.0%
AACATTTCTTTCCTTGGTTC+TGG - chr1_1:43453360-43453379 Msa0022960:intron 35.0%
GACAAGTTAATATTCACCTG+TGG + chr1_1:43453435-43453454 None:intergenic 35.0%
ACAACACCACAACTTACATA+AGG + chr1_1:43453502-43453521 None:intergenic 35.0%
TGCAATATTTGCTTCAAGCT+TGG - chr1_1:43453560-43453579 Msa0022960:CDS 35.0%
CATACGGAACTCTCAATTAT+TGG + chr1_1:43453614-43453633 None:intergenic 35.0%
CAATAATTGAGAGTTCCGTA+TGG - chr1_1:43453612-43453631 Msa0022960:CDS 35.0%
! TGCTGGTAGTTACTTCTTTT+AGG - chr1_1:43454060-43454079 Msa0022960:intron 35.0%
! GCTGGTAGTTACTTCTTTTA+GGG - chr1_1:43454061-43454080 Msa0022960:intron 35.0%
!!! CTGTTTGTTTTAGATTCTGG+TGG - chr1_1:43454131-43454150 Msa0022960:intron 35.0%
!! CCCAATGCACTTTTTACTAA+AGG - chr1_1:43454177-43454196 Msa0022960:intron 35.0%
GTATTTACATGGCAGATCTT+TGG - chr1_1:43454485-43454504 Msa0022960:intron 35.0%
GCTATCTACAACACTTACAT+AGG - chr1_1:43454527-43454546 Msa0022960:intron 35.0%
TCTATTCTACTGGAAGAGAA+GGG + chr1_1:43454581-43454600 None:intergenic 35.0%
TTTCAATGCCTCTATTCTAC+TGG + chr1_1:43454591-43454610 None:intergenic 35.0%
! AGTTTAGTTTCTCTTATGCG+AGG + chr1_1:43454722-43454741 None:intergenic 35.0%
!!! GTACTTTTGGCTTTTGATCA+AGG + chr1_1:43454753-43454772 None:intergenic 35.0%
!! TCGGCTTCATAAAGTACTTT+TGG + chr1_1:43454766-43454785 None:intergenic 35.0%
! AAAGTACTTTATGAAGCCGA+AGG - chr1_1:43454766-43454785 Msa0022960:intron 35.0%
! ATCTTTTGCTGGGTTTTTGT+GGG - chr1_1:43454830-43454849 Msa0022960:intron 35.0%
TGTTTATCCAAGCAGAAACA+GGG + chr1_1:43454876-43454895 None:intergenic 35.0%
!! TCAATCTCAAGTGTTGAACT+TGG - chr1_1:43455135-43455154 Msa0022960:intron 35.0%
!! CAGGATTCTATCGATTCATA+TGG - chr1_1:43455230-43455249 Msa0022960:intron 35.0%
!! AGCATAGTTTGCTAGATGAA+AGG + chr1_1:43455286-43455305 None:intergenic 35.0%
!!! TTTGTTTTATTGACCGGCTT+TGG + chr1_1:43455365-43455384 None:intergenic 35.0%
!!! TCCGGATTTGTTTTATTGAC+CGG + chr1_1:43455371-43455390 None:intergenic 35.0%
!! ATCTTTAAAGCACTAGGATC+CGG + chr1_1:43455389-43455408 None:intergenic 35.0%
!! TGAACCATCTTTAAAGCACT+AGG + chr1_1:43455395-43455414 None:intergenic 35.0%
GCCATGAGAATTGTATACAA+CGG - chr1_1:43455528-43455547 Msa0022960:five_prime_UTR 35.0%
GACACACAAACGTTTGATGA+AGG + chr1_1:43449848-43449867 None:intergenic 40.0%
AAGAAGTAGAGAGCTCCATA+AGG + chr1_1:43449901-43449920 None:intergenic 40.0%
CACATTCCATAATTCCCACA+TGG - chr1_1:43449939-43449958 Msa0022960:intron 40.0%
GGAATTCCATGTGGGAATTA+TGG + chr1_1:43449948-43449967 None:intergenic 40.0%
! CCAAACCGTTTGGAAGATTT+TGG + chr1_1:43450019-43450038 None:intergenic 40.0%
CCAAAATCTTCCAAACGGTT+TGG - chr1_1:43450016-43450035 Msa0022960:three_prime_UTR 40.0%
!! TCCAAACGGTTTGGTTCAAT+TGG - chr1_1:43450025-43450044 Msa0022960:three_prime_UTR 40.0%
!! CCAAACGGTTTGGTTCAATT+GGG - chr1_1:43450026-43450045 Msa0022960:three_prime_UTR 40.0%
AGTGTAAACCCATTTCCATC+AGG - chr1_1:43450104-43450123 Msa0022960:CDS 40.0%
GTGTAAACCCATTTCCATCA+GGG - chr1_1:43450105-43450124 Msa0022960:CDS 40.0%
CAACATACCCTGATGGAAAT+GGG + chr1_1:43450115-43450134 None:intergenic 40.0%
ACAACATACCCTGATGGAAA+TGG + chr1_1:43450116-43450135 None:intergenic 40.0%
CTCGTACCCGTATTTATATC+GGG - chr1_1:43450622-43450641 Msa0022960:intron 40.0%
ACGGAAGCAAAACGAAATGA+TGG - chr1_1:43450863-43450882 Msa0022960:intron 40.0%
CGGAAGCAAAACGAAATGAT+GGG - chr1_1:43450864-43450883 Msa0022960:intron 40.0%
GGAAGCAAAACGAAATGATG+GGG - chr1_1:43450865-43450884 Msa0022960:intron 40.0%
ACAGAGAAATGCAGCTGATA+CGG + chr1_1:43450994-43451013 None:intergenic 40.0%
TCACAATGTATTGCGACCAT+TGG - chr1_1:43451035-43451054 Msa0022960:intron 40.0%
! TTTTATCGAAGTGGTCCACT+CGG - chr1_1:43451085-43451104 Msa0022960:intron 40.0%
ACTAATAGCGATCGTTAGCA+AGG - chr1_1:43451109-43451128 Msa0022960:intron 40.0%
CATTGTGACAATCACAATCC+AGG + chr1_1:43451205-43451224 None:intergenic 40.0%
GTAACCAACGGAATAATCAG+TGG + chr1_1:43451349-43451368 None:intergenic 40.0%
AAGAACCTAATGCTGTACCA+CGG + chr1_1:43451575-43451594 None:intergenic 40.0%
!! CCAAAGCACTGTAAACGATA+GGG + chr1_1:43451680-43451699 None:intergenic 40.0%
!! ACCAAAGCACTGTAAACGAT+AGG + chr1_1:43451681-43451700 None:intergenic 40.0%
!! GGTCTTTTTGCTCTGATTTG+TGG - chr1_1:43451765-43451784 Msa0022960:intron 40.0%
! TTTGCTCTGATTTGTGGGAA+TGG - chr1_1:43451771-43451790 Msa0022960:intron 40.0%
AGGAGACGAAAGAAAGAGAA+AGG + chr1_1:43452004-43452023 None:intergenic 40.0%
ATCTTTCTGTCCAATCTGCA+TGG - chr1_1:43452472-43452491 Msa0022960:intron 40.0%
TAACCAAGAACCATGCAGAT+TGG + chr1_1:43452485-43452504 None:intergenic 40.0%
GTTATATTCTTTGCAGCAGC+TGG - chr1_1:43452501-43452520 Msa0022960:intron 40.0%
AGTTCAATCCTACAGTCAAG+AGG + chr1_1:43452527-43452546 None:intergenic 40.0%
TCTATTCTGTTCCTCCTCTT+AGG - chr1_1:43452598-43452617 Msa0022960:intron 40.0%
CAGTTAGCAGTGCAAAGATT+GGG + chr1_1:43452689-43452708 None:intergenic 40.0%
ACAGTTAGCAGTGCAAAGAT+TGG + chr1_1:43452690-43452709 None:intergenic 40.0%
TTGACAGAAGTGACTTATGC+AGG - chr1_1:43452755-43452774 Msa0022960:CDS 40.0%
! AACGCATAAGTTGGAGACAA+TGG + chr1_1:43453026-43453045 None:intergenic 40.0%
! AGGAGATCGTAGGTATGTTT+TGG - chr1_1:43453150-43453169 Msa0022960:intron 40.0%
GTTCGGAACATTTCTTTCCT+TGG - chr1_1:43453354-43453373 Msa0022960:intron 40.0%
TCAGCAAAATTCCAGAACCA+AGG + chr1_1:43453374-43453393 None:intergenic 40.0%
!! TAAGTTGTGGTGTTGTTGAC+AGG - chr1_1:43453506-43453525 Msa0022960:CDS 40.0%
GAAGCAAATATTGCATGAGC+TGG + chr1_1:43453555-43453574 None:intergenic 40.0%
ATTAATCTGCTCATCGAACC+TGG + chr1_1:43453590-43453609 None:intergenic 40.0%
!! CTTCTTTTAGGGATTGAAGG+AGG - chr1_1:43454072-43454091 Msa0022960:intron 40.0%
CTTTATAGATGCAGGTTGCT+CGG + chr1_1:43454312-43454331 None:intergenic 40.0%
CATCTATAAAGCTCCTGTCA+TGG - chr1_1:43454321-43454340 Msa0022960:intron 40.0%
TATAAAGCTCCTGTCATGGA+AGG - chr1_1:43454325-43454344 Msa0022960:intron 40.0%
GGTTGTCAAAAAATCTGCCA+TGG + chr1_1:43454408-43454427 None:intergenic 40.0%
!! TAAGTGTTGTAGATAGCGGA+AGG + chr1_1:43454524-43454543 None:intergenic 40.0%
CTATTCTACTGGAAGAGAAG+GGG + chr1_1:43454580-43454599 None:intergenic 40.0%
CTCTATTCTACTGGAAGAGA+AGG + chr1_1:43454582-43454601 None:intergenic 40.0%
CTTCTCTTCCAGTAGAATAG+AGG - chr1_1:43454580-43454599 Msa0022960:intron 40.0%
!! ATATGGACTAGTTCAAGTCG+AGG - chr1_1:43454622-43454641 Msa0022960:intron 40.0%
! TTCAAGACACCATCTTTTGC+TGG - chr1_1:43454819-43454838 Msa0022960:intron 40.0%
! TCAAGACACCATCTTTTGCT+GGG - chr1_1:43454820-43454839 Msa0022960:intron 40.0%
CACAAAAACCCAGCAAAAGA+TGG + chr1_1:43454831-43454850 None:intergenic 40.0%
! CATCTTTTGCTGGGTTTTTG+TGG - chr1_1:43454829-43454848 Msa0022960:intron 40.0%
GTTTATCCAAGCAGAAACAG+GGG + chr1_1:43454875-43454894 None:intergenic 40.0%
CTGTTTATCCAAGCAGAAAC+AGG + chr1_1:43454877-43454896 None:intergenic 40.0%
TTTCCATAAGCTATCCTGGA+TGG - chr1_1:43455003-43455022 Msa0022960:intron 40.0%
! GTGTCTGGAATATATGTTGC+AGG - chr1_1:43455198-43455217 Msa0022960:intron 40.0%
ATGTTGCAGGAAGCAATATC+AGG - chr1_1:43455211-43455230 Msa0022960:intron 40.0%
GCCGGTCAATAAAACAAATC+CGG - chr1_1:43455367-43455386 Msa0022960:CDS 40.0%
!! GGATCCTAGTGCTTTAAAGA+TGG - chr1_1:43455388-43455407 Msa0022960:CDS 40.0%
GCCGTTGTATACAATTCTCA+TGG + chr1_1:43455532-43455551 None:intergenic 40.0%
! AAGGTGTTCTTGCTGATGTG+GGG + chr1_1:43449829-43449848 None:intergenic 45.0%
!! GAAGGTGTTCTTGCTGATGT+GGG + chr1_1:43449830-43449849 None:intergenic 45.0%
!! TGAAGGTGTTCTTGCTGATG+TGG + chr1_1:43449831-43449850 None:intergenic 45.0%
!! AGTGTTGCTTCAGCTCCTTA+TGG - chr1_1:43449883-43449902 Msa0022960:three_prime_UTR 45.0%
GTTGTGGACTTAGCTGAAGT+GGG + chr1_1:43449995-43450014 None:intergenic 45.0%
AGTTGTGGACTTAGCTGAAG+TGG + chr1_1:43449996-43450015 None:intergenic 45.0%
CCCAATTGAACCAAACCGTT+TGG + chr1_1:43450029-43450048 None:intergenic 45.0%
! AGCCGCAATGTCAAGGTTTT+TGG - chr1_1:43450945-43450964 Msa0022960:intron 45.0%
! GCCGCAATGTCAAGGTTTTT+GGG - chr1_1:43450946-43450965 Msa0022960:intron 45.0%
CCCCAAAAACCTTGACATTG+CGG + chr1_1:43450950-43450969 None:intergenic 45.0%
! CCGCAATGTCAAGGTTTTTG+GGG - chr1_1:43450947-43450966 Msa0022960:intron 45.0%
GGACTTTGCAACTGCAATTG+TGG - chr1_1:43450968-43450987 Msa0022960:intron 45.0%
ATGTATTGCGACCATTGGCA+AGG - chr1_1:43451040-43451059 Msa0022960:intron 45.0%
TTAAGGCCACATACTATCCG+TGG - chr1_1:43451555-43451574 Msa0022960:intron 45.0%
ACTATCCGTGGTACAGCATT+AGG - chr1_1:43451567-43451586 Msa0022960:intron 45.0%
AGCTGCAAGCAACACATTGA+TGG + chr1_1:43451618-43451637 None:intergenic 45.0%
CCCTATCGTTTACAGTGCTT+TGG - chr1_1:43451677-43451696 Msa0022960:intron 45.0%
!! CTTGTCTTGAAAGCACTCTC+TGG - chr1_1:43451744-43451763 Msa0022960:intron 45.0%
CCTGCGGCTATAGGTAAATA+AGG + chr1_1:43452450-43452469 None:intergenic 45.0%
! CCTTATTTACCTATAGCCGC+AGG - chr1_1:43452447-43452466 Msa0022960:intron 45.0%
TTGGACAGAAAGATCTCCTG+CGG + chr1_1:43452466-43452485 None:intergenic 45.0%
TGTCCAATCTGCATGGTTCT+TGG - chr1_1:43452479-43452498 Msa0022960:intron 45.0%
! TACTCCTTCGGCCTTTTTCT+TGG - chr1_1:43452570-43452589 Msa0022960:CDS 45.0%
AGTACCAAGAAAAAGGCCGA+AGG + chr1_1:43452577-43452596 None:intergenic 45.0%
AAGCGTTTCATCCTAAGAGG+AGG + chr1_1:43452612-43452631 None:intergenic 45.0%
!! GGAAAGCGTTTCATCCTAAG+AGG + chr1_1:43452615-43452634 None:intergenic 45.0%
AAGTGACTTATGCAGGTACG+AGG - chr1_1:43452762-43452781 Msa0022960:CDS 45.0%
!! CTCTTGGACTTGCTTTTGAG+TGG - chr1_1:43452826-43452845 Msa0022960:CDS 45.0%
!! TTGGACTTGCTTTTGAGTGG+AGG - chr1_1:43452829-43452848 Msa0022960:CDS 45.0%
GTTGCTTCGTACTTCGCAAT+TGG - chr1_1:43452871-43452890 Msa0022960:intron 45.0%
TGAACAACTGAGATCACGAG+TGG - chr1_1:43452902-43452921 Msa0022960:intron 45.0%
CTACGATCTCCTTCAACATC+TGG + chr1_1:43453142-43453161 None:intergenic 45.0%
CAGATGTTGAAGGAGATCGT+AGG - chr1_1:43453140-43453159 Msa0022960:intron 45.0%
GGCAGCAATTTATATGCCAC+AGG - chr1_1:43453416-43453435 Msa0022960:intron 45.0%
TGCTTCAAGCTTGGTTTACC+AGG - chr1_1:43453569-43453588 Msa0022960:CDS 45.0%
AGAACAACCTTTGCTTGTGC+TGG - chr1_1:43454043-43454062 Msa0022960:intron 45.0%
GTAACTACCAGCACAAGCAA+AGG + chr1_1:43454053-43454072 None:intergenic 45.0%
CCACGTAGAGTAATCAAGCA+AGG + chr1_1:43454100-43454119 None:intergenic 45.0%
CCTTGCTTGATTACTCTACG+TGG - chr1_1:43454097-43454116 Msa0022960:intron 45.0%
! GACAGGAGCTTTATAGATGC+AGG + chr1_1:43454320-43454339 None:intergenic 45.0%
!!! GATTTTTTGACAACCGCCAC+AGG - chr1_1:43454413-43454432 Msa0022960:intron 45.0%
ATCCCTTCACAAATTGCCTG+TGG + chr1_1:43454432-43454451 None:intergenic 45.0%
ACAGGCAATTTGTGAAGGGA+TGG - chr1_1:43454431-43454450 Msa0022960:intron 45.0%
GCCATGTAAATACGCCATTG+CGG + chr1_1:43454478-43454497 None:intergenic 45.0%
TAGCGGAAGGCAGAATATGA+AGG + chr1_1:43454511-43454530 None:intergenic 45.0%
CTCAACGTAACAGTTGGAGT+TGG + chr1_1:43454554-43454573 None:intergenic 45.0%
CAACTCCAACTGTTACGTTG+AGG - chr1_1:43454552-43454571 Msa0022960:intron 45.0%
! TTAGATGAGTTTTCCCCCTC+AGG + chr1_1:43454660-43454679 None:intergenic 45.0%
GCAGTTTCCATAAGCTATCC+TGG - chr1_1:43454999-43455018 Msa0022960:intron 45.0%
AAGCCATCCAGGATAGCTTA+TGG + chr1_1:43455009-43455028 None:intergenic 45.0%
GCTATCCTGGATGGCTTATA+CGG - chr1_1:43455012-43455031 Msa0022960:intron 45.0%
AACTTCCGTATAAGCCATCC+AGG + chr1_1:43455020-43455039 None:intergenic 45.0%
TAGAGCAACTGCTGCATTTC+TGG + chr1_1:43455342-43455361 None:intergenic 45.0%
!! TTGAAAAATATATAAATATA+TGG + chr1_1:43455164-43455183 None:intergenic 5.0%
GAGCTGAAGCAACACTCAAC+TGG + chr1_1:43449879-43449898 None:intergenic 50.0%
TGTCTATGTTGCACGCACAC+GGG + chr1_1:43450661-43450680 None:intergenic 50.0%
CTGTCTATGTTGCACGCACA+CGG + chr1_1:43450662-43450681 None:intergenic 50.0%
TAGTTGCAGCCGCAATGTCA+AGG - chr1_1:43450938-43450957 Msa0022960:intron 50.0%
! CGATCGCTATTAGTACCGAG+TGG + chr1_1:43451103-43451122 None:intergenic 50.0%
!! ATCGACAGTAAAAGCGTCCC+TGG - chr1_1:43451184-43451203 Msa0022960:intron 50.0%
! GCAGCCACTGATTATTCCGT+TGG - chr1_1:43451342-43451361 Msa0022960:intron 50.0%
GCTGTACCACGGATAGTATG+TGG + chr1_1:43451564-43451583 None:intergenic 50.0%
GAAAGATCTCCTGCGGCTAT+AGG + chr1_1:43452459-43452478 None:intergenic 50.0%
! AAGTCCAAGAGCAGCTCTAG+TGG + chr1_1:43452817-43452836 None:intergenic 50.0%
AAAAACCACAGGAGAGCTGC+AGG + chr1_1:43453065-43453084 None:intergenic 50.0%
!! GGTGTTGTTGACAGGCTTTC+AGG - chr1_1:43453514-43453533 Msa0022960:CDS 50.0%
GTTGACAGGCTTTCAGGAGA+TGG - chr1_1:43453520-43453539 Msa0022960:CDS 50.0%
CTCCTGTCATGGAAGGTCTA+GGG - chr1_1:43454332-43454351 Msa0022960:intron 50.0%
! GTGTTGTTAAATGGCGGCCA+TGG - chr1_1:43454388-43454407 Msa0022960:intron 50.0%
CCTTCACAAATTGCCTGTGG+CGG + chr1_1:43454429-43454448 None:intergenic 50.0%
CGCCACAGGCAATTTGTGAA+GGG - chr1_1:43454427-43454446 Msa0022960:intron 50.0%
AAATACGCCATTGCGGCCTA+TGG + chr1_1:43454471-43454490 None:intergenic 50.0%
GCCGCAATGGCGTATTTACA+TGG - chr1_1:43454474-43454493 Msa0022960:intron 50.0%
!! TGGACTAGTTCAAGTCGAGG+TGG - chr1_1:43454625-43454644 Msa0022960:intron 50.0%
!! GGACTAGTTCAAGTCGAGGT+GGG - chr1_1:43454626-43454645 Msa0022960:intron 50.0%
! GACTAGTTCAAGTCGAGGTG+GGG - chr1_1:43454627-43454646 Msa0022960:intron 50.0%
ACTAGTTCAAGTCGAGGTGG+GGG - chr1_1:43454628-43454647 Msa0022960:intron 50.0%
! ATGAGTTTTCCCCCTCAGGT+TGG + chr1_1:43454656-43454675 None:intergenic 50.0%
! TGCTGGGTTTTTGTGGGTCA+AGG - chr1_1:43454836-43454855 Msa0022960:intron 50.0%
! ACTGCTGCATTTCTGGATGC+AGG + chr1_1:43455335-43455354 None:intergenic 50.0%
AGCAGTTGCTCTACCAAAGC+CGG - chr1_1:43455349-43455368 Msa0022960:CDS 50.0%
GTGGACTTAGCTGAAGTGGG+TGG + chr1_1:43449992-43450011 None:intergenic 55.0%
TTGCAGGCCTGCAGTGAAGT+TGG - chr1_1:43451465-43451484 Msa0022960:CDS 55.0%
AGCAGCTCCAACTTCACTGC+AGG + chr1_1:43451475-43451494 None:intergenic 55.0%
TGCAGTGAAGTTGGAGCTGC+TGG - chr1_1:43451474-43451493 Msa0022960:intron 55.0%
TACGCCACTAGAGCTGCTCT+TGG - chr1_1:43452810-43452829 Msa0022960:CDS 55.0%
ATCTACCTGCAGCTCTCCTG+TGG - chr1_1:43453057-43453076 Msa0022960:intron 55.0%
GCTCCTGTCATGGAAGGTCT+AGG - chr1_1:43454331-43454350 Msa0022960:intron 55.0%
GTCCCTAGACCTTCCATGAC+AGG + chr1_1:43454337-43454356 None:intergenic 55.0%
CCGCCACAGGCAATTTGTGA+AGG - chr1_1:43454426-43454445 Msa0022960:intron 55.0%
GGGAGCCTCAACGTAACAGT+TGG + chr1_1:43454560-43454579 None:intergenic 55.0%
CTAGTTCAAGTCGAGGTGGG+GGG - chr1_1:43454629-43454648 Msa0022960:intron 55.0%
! GTGGGTCAAGGCATCTTTGC+CGG - chr1_1:43454848-43454867 Msa0022960:intron 55.0%
TCCAAGCAGAAACAGGGGAC+CGG + chr1_1:43454870-43454889 None:intergenic 55.0%
ATGTTGCACGCACACGGGTC+CGG + chr1_1:43450656-43450675 None:intergenic 60.0%
! GCAGCTGGCCTCTTGACTGT+AGG - chr1_1:43452516-43452535 Msa0022960:CDS 60.0%
TTGTGAAGGGATGGCCGCCA+TGG - chr1_1:43454440-43454459 Msa0022960:intron 60.0%
GGCCTATGGCACTTCCATGG+CGG + chr1_1:43454457-43454476 None:intergenic 60.0%
TGCGGCCTATGGCACTTCCA+TGG + chr1_1:43454460-43454479 None:intergenic 60.0%
!! GGAAGTGCCATAGGCCGCAA+TGG - chr1_1:43454461-43454480 Msa0022960:intron 60.0%
!! GGCCGCCATGGAAGTGCCAT+AGG - chr1_1:43454452-43454471 Msa0022960:intron 65.0%
AGGTGGGGGGACCAACCTGA+GGG - chr1_1:43454642-43454661 Msa0022960:intron 65.0%
!! GCCGGTCCCCTGTTTCTGCT+TGG - chr1_1:43454866-43454885 Msa0022960:intron 65.0%
GAGGTGGGGGGACCAACCTG+AGG - chr1_1:43454641-43454660 Msa0022960:intron 70.0%
GGTGGGGGGACCAACCTGAG+GGG - chr1_1:43454643-43454662 Msa0022960:intron 70.0%
GTGGGGGGACCAACCTGAGG+GGG - chr1_1:43454644-43454663 Msa0022960:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 43449810 43455556 43449810 ID=Msa0022960;Name=Msa0022960
chr1_1 mRNA 43449810 43455556 43449810 ID=Msa0022960-mRNA-1;Parent=Msa0022960;Name=Msa0022960-mRNA-1;_AED=0.19;_eAED=0.19;_QI=92|0.9|0.81|1|0.9|0.81|11|227|375
chr1_1 exon 43449810 43449911 43449810 ID=Msa0022960-mRNA-1:exon:12616;Parent=Msa0022960-mRNA-1
chr1_1 exon 43449947 43450146 43449947 ID=Msa0022960-mRNA-1:exon:12615;Parent=Msa0022960-mRNA-1
chr1_1 exon 43451456 43451488 43451456 ID=Msa0022960-mRNA-1:exon:12614;Parent=Msa0022960-mRNA-1
chr1_1 exon 43451776 43451838 43451776 ID=Msa0022960-mRNA-1:exon:12613;Parent=Msa0022960-mRNA-1
chr1_1 exon 43451929 43452046 43451929 ID=Msa0022960-mRNA-1:exon:12612;Parent=Msa0022960-mRNA-1
chr1_1 exon 43452205 43452297 43452205 ID=Msa0022960-mRNA-1:exon:12611;Parent=Msa0022960-mRNA-1
chr1_1 exon 43452516 43452589 43452516 ID=Msa0022960-mRNA-1:exon:12610;Parent=Msa0022960-mRNA-1
chr1_1 exon 43452704 43452849 43452704 ID=Msa0022960-mRNA-1:exon:12609;Parent=Msa0022960-mRNA-1
chr1_1 exon 43453499 43453674 43453499 ID=Msa0022960-mRNA-1:exon:12608;Parent=Msa0022960-mRNA-1
chr1_1 exon 43453771 43453895 43453771 ID=Msa0022960-mRNA-1:exon:12607;Parent=Msa0022960-mRNA-1
chr1_1 exon 43455240 43455556 43455240 ID=Msa0022960-mRNA-1:exon:12606;Parent=Msa0022960-mRNA-1
chr1_1 five_prime_UTR 43455465 43455556 43455465 ID=Msa0022960-mRNA-1:five_prime_utr;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43455240 43455464 43455240 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43453771 43453895 43453771 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43453499 43453674 43453499 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43452704 43452849 43452704 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43452516 43452589 43452516 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43452205 43452297 43452205 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43451929 43452046 43451929 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43451776 43451838 43451776 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43451456 43451488 43451456 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 CDS 43450072 43450146 43450072 ID=Msa0022960-mRNA-1:cds;Parent=Msa0022960-mRNA-1
chr1_1 three_prime_UTR 43449947 43450071 43449947 ID=Msa0022960-mRNA-1:three_prime_utr;Parent=Msa0022960-mRNA-1
chr1_1 three_prime_UTR 43449810 43449911 43449810 ID=Msa0022960-mRNA-1:three_prime_utr;Parent=Msa0022960-mRNA-1
Gene Sequence

>Msa0022960

ATGGAGCTCTCTACTTCTTCATCTTCATCTCTTCATTCACATTCCATAATTCCCACATGGAATTCCAAAAACTACTACTCTTTCAAACCACCCACTTCAGCTAAGTCCACAACTCCAAAATCTTCCAAACGGTTTGGTTCAATTGGGCTATACCATCATCATCACACAAGTTTCTCAGCTCATGTTTCAAAACTGAAGAGACAGTGTAAACCCATTTCCATCAGGGCCTGCAGTGAAGTTGGAGCTGCTGGATCTGATCGTCCATTTGCTGACAAAGTTTTAGATTTTAAAGATGCATTCTGGAGATTTTTAAGGCCACATACTATCCGTGGTACAGCATTAGGTTCTTTTGCTTTGGTGTCAAGAGCTTTGATCGAGAACTCAAATCTGATAAAGTGGTCACTTGTCTTGAAAGCACTCTCTGGTCTTTTTGCTCTGATTTGTGGGAATGGTTATATAGTTGGCATCAATCAAATATATGACATTGGCATTGACAAGTATGATGCAGACAGACATATAGATAATTCAGCTGGCCTCTTGACTGTAGGATTGAACTTTGGACCTTTTATTTTTTCGCTTTACTCCTTCGGCCTTTTTCTTGGTACTATCTATTCTGTTCCTCCTCTTAGGATGAAACGCTTTCCTGTTGCAGCATTTCTTATTATTGCTACGGTACGAGGTTTTCTACTTAACTTTGGTGTGTACTACGCCACTAGAGCTGCTCTTGGACTTGCTTTTGAGTGGAGCTCTCCTGTGGTTTTTATCACAACTTTCGTAACATTTTTCGCATTGGTAATTGCTATAACAAAAGATCTTCCAGATGTTGAAGGAGATCGTAGGTATCAGATATCGACCTTTGCTACAAAATTAGGAGTTCGGAACATTTCTTTCCTTGGTTCTGGAATTTTGCTGATGAACTATGTTGTTACCATATTGGCAGCAATTTATATGCCACAGGCTTTCAGGAGATGGTTACTGATACCAGCTCATGCAATATTTGCTTCAAGCTTGGTTTACCAGGTGCAGATATTAGAAAAAGCAAATTATACAAAGGAAGCAATATCAGGATTCTATCGATTCATATGGAATCTGTTCTATGCTGAGTATGCATTATTTCCTTTCATCTAG

Protein sequence

>Msa0022960

MELSTSSSSSLHSHSIIPTWNSKNYYSFKPPTSAKSTTPKSSKRFGSIGLYHHHHTSFSAHVSKLKRQCKPISIRACSEVGAAGSDRPFADKVLDFKDAFWRFLRPHTIRGTALGSFALVSRALIENSNLIKWSLVLKALSGLFALICGNGYIVGINQIYDIGIDKYDADRHIDNSAGLLTVGLNFGPFIFSLYSFGLFLGTIYSVPPLRMKRFPVAAFLIIATVRGFLLNFGVYYATRAALGLAFEWSSPVVFITTFVTFFALVIAITKDLPDVEGDRRYQISTFATKLGVRNISFLGSGILLMNYVVTILAAIYMPQAFRRWLLIPAHAIFASSLVYQVQILEKANYTKEAISGFYRFIWNLFYAEYALFPFI*