AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0805000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805000 MtrunA17_Chr5g0412871 98.545 481 7 0 1 481 1 481 0.0 980
Msa0805000 MtrunA17_Chr8g0345201 49.585 482 232 3 3 474 44 524 3.34e-167 482
Msa0805000 MtrunA17_Chr6g0475681 24.868 378 250 14 93 463 173 523 2.41e-22 100
Msa0805000 MtrunA17_Chr2g0324801 23.200 375 245 11 74 440 17 356 3.35e-19 89.4
Msa0805000 MtrunA17_Chr8g0387481 26.012 346 225 14 100 438 87 408 4.49e-19 89.7
Msa0805000 MtrunA17_Chr7g0248681 26.562 256 173 9 100 352 86 329 4.81e-19 89.7
Msa0805000 MtrunA17_Chr6g0488041 25.784 287 191 11 94 376 84 352 9.67e-19 88.6
Msa0805000 MtrunA17_Chr8g0360241 23.077 377 247 14 72 440 47 388 8.84e-18 85.5
Msa0805000 MtrunA17_Chr3g0135251 23.077 377 254 16 100 466 78 428 1.02e-17 85.5
Msa0805000 MtrunA17_Chr8g0389311 25.974 308 207 13 103 407 83 372 3.11e-17 84.0
Msa0805000 MtrunA17_Chr8g0389321 25.974 308 207 13 103 407 83 372 3.11e-17 84.0
Msa0805000 MtrunA17_Chr5g0400831 27.723 202 132 7 100 291 79 276 3.04e-16 81.3
Msa0805000 MtrunA17_Chr8g0348351 25.424 177 127 4 100 273 86 260 6.71e-16 80.1
Msa0805000 MtrunA17_Chr4g0054371 27.119 177 123 5 100 272 79 253 1.36e-15 79.0
Msa0805000 MtrunA17_Chr5g0398431 25.874 143 103 3 129 270 178 318 1.20e-12 70.1
Msa0805000 MtrunA17_Chr3g0114811 22.493 369 240 15 99 463 115 441 2.76e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0805000 AT1G70580.4 84.823 481 73 0 1 481 1 481 0.0 866
Msa0805000 AT1G70580.2 84.823 481 73 0 1 481 1 481 0.0 866
Msa0805000 AT1G70580.3 84.823 481 73 0 1 481 1 481 0.0 866
Msa0805000 AT1G70580.1 84.823 481 73 0 1 481 1 481 0.0 866
Msa0805000 AT1G23310.1 84.200 481 76 0 1 481 1 481 0.0 860
Msa0805000 AT1G23310.2 84.738 439 67 0 1 439 1 439 0.0 788
Msa0805000 AT1G72330.1 49.372 478 231 3 5 472 62 538 1.86e-168 486
Msa0805000 AT1G72330.3 48.065 491 231 4 5 472 62 551 7.45e-165 477
Msa0805000 AT1G17290.1 49.375 480 232 3 5 474 65 543 3.00e-163 473
Msa0805000 AT1G72330.2 49.284 349 166 3 5 343 62 409 2.49e-115 346
Msa0805000 AT2G20610.1 24.930 357 226 14 97 447 98 418 4.39e-21 96.3
Msa0805000 AT5G51690.2 23.037 382 258 14 95 468 17 370 9.26e-21 94.4
Msa0805000 AT5G51690.1 23.037 382 258 14 95 468 140 493 1.22e-20 95.1
Msa0805000 AT2G24850.1 24.074 378 242 13 97 466 81 421 1.23e-20 94.7
Msa0805000 AT2G20610.2 24.633 341 218 13 97 431 98 405 1.10e-19 91.7
Msa0805000 AT5G36160.1 23.881 402 251 17 83 476 65 419 5.77e-19 89.4
Msa0805000 AT1G62960.1 24.084 382 254 17 99 471 202 556 2.40e-18 88.2
Msa0805000 AT4G11280.1 26.182 275 186 9 100 371 90 350 9.31e-18 86.3
Msa0805000 AT4G28420.2 23.134 402 266 15 69 465 64 427 1.18e-16 82.4
Msa0805000 AT4G26200.1 25.581 215 154 4 47 258 43 254 2.21e-16 81.6
Msa0805000 AT4G28410.1 23.097 381 238 12 74 440 77 416 9.59e-16 79.7
Msa0805000 AT4G23590.1 21.260 381 254 13 98 472 68 408 2.12e-15 78.6
Msa0805000 AT4G28420.1 25.000 240 163 6 69 308 64 286 4.00e-15 77.4
Msa0805000 AT4G08040.1 22.849 372 260 13 100 467 77 425 4.16e-15 77.8
Msa0805000 AT4G28410.2 22.667 375 235 12 74 434 77 410 7.82e-15 77.0
Msa0805000 AT5G53970.1 22.500 400 265 14 72 465 40 400 9.41e-15 76.6
Msa0805000 AT1G01480.1 21.994 341 238 13 100 434 87 405 3.91e-14 75.1
Msa0805000 AT4G23600.1 21.359 412 247 19 85 477 60 413 6.00e-14 73.9
Msa0805000 AT5G65800.1 28.409 176 121 4 100 272 79 252 3.30e-13 72.0
Msa0805000 AT4G37770.1 22.460 374 260 14 100 466 79 429 3.72e-13 72.0
Msa0805000 AT3G49700.1 27.778 198 133 6 100 291 79 272 4.78e-13 71.6
Msa0805000 AT1G01480.2 22.500 320 221 13 129 443 12 309 3.87e-12 68.2
Msa0805000 AT4G23600.3 24.138 261 161 12 85 342 60 286 6.31e-12 67.4
Msa0805000 AT3G61510.1 24.103 195 138 6 82 273 70 257 1.43e-11 67.0
Msa0805000 AT2G22810.1 26.286 175 123 5 100 270 79 251 9.00e-11 64.3

Find 155 sgRNAs with CRISPR-Local

Find 485 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCTTCAACCTTATTATT+TGG 0.103405 5_3:-21397152 Msa0805000:three_prime_UTR
TACAATGTCCTTACACAATA+TGG 0.130171 5_3:+21397042 None:intergenic
TGGCCTAGCTTTAGGCTTAA+AGG 0.222985 5_3:+21405329 None:intergenic
ACTGTTCCTGGTTCAGGATT+TGG 0.231566 5_3:-21398716 Msa0805000:CDS
ATTAATCGACTCATAGTCTA+AGG 0.247563 5_3:+21403872 None:intergenic
ATATCCACTGTTCCTGGTTC+AGG 0.262978 5_3:-21398722 Msa0805000:CDS
GGAAGAAATGCCTGCTATTA+TGG 0.271511 5_3:-21397602 Msa0805000:CDS
AATATTTGTGCTGGAACATT+TGG 0.293542 5_3:+21399726 None:intergenic
TTAGCAGTCTCTAAAGCTTT+TGG 0.293897 5_3:+21398803 None:intergenic
TTTCTTATGACCAATTTGTT+AGG 0.295713 5_3:-21399560 Msa0805000:CDS
AAGCTTCAACCTTATTATTT+GGG 0.297059 5_3:-21397151 Msa0805000:three_prime_UTR
TTACTACTGTCTCAAGCTTT+TGG 0.300237 5_3:-21398756 Msa0805000:CDS
TCATTCACATCGGGTGGTTT+AGG 0.306462 5_3:-21402861 Msa0805000:intron
AGCTGGACTTCATTGCTTAA+AGG 0.312879 5_3:+21400724 None:intergenic
TCTGCAACAATTGCTCTTCT+TGG 0.315497 5_3:-21401248 Msa0805000:CDS
TCGTCATCTCCCAAATAATA+AGG 0.321063 5_3:+21397142 None:intergenic
AAAGTTCAATGATGATTTCA+TGG 0.322465 5_3:-21397569 Msa0805000:CDS
TGTTGGAAACCCACATGCTT+TGG 0.325099 5_3:-21403183 Msa0805000:CDS
CACTGGCCAGTAGGGTTTCC+AGG 0.336167 5_3:+21400983 None:intergenic
CCTCGAAGAGACAGCAAATT+GGG 0.336543 5_3:-21401204 Msa0805000:CDS
ACCCTTCATTAGTGCCAAAA+AGG 0.337700 5_3:-21400855 Msa0805000:intron
GCCACTTCCTTCCTCACTGC+TGG 0.358669 5_3:+21401639 None:intergenic
GTTAGAGAGGCTCGCTATAA+AGG 0.359225 5_3:-21401152 Msa0805000:CDS
AAGATGATTGTTTGCCATCA+TGG 0.374038 5_3:+21397366 None:intergenic
GCTTCAGAAGGAGGGCAAAA+AGG 0.374053 5_3:-21403790 Msa0805000:intron
GCTGTCTCTTCGAGGTAGTA+TGG 0.374958 5_3:+21401212 None:intergenic
ACCTCGAAGAGACAGCAAAT+TGG 0.375963 5_3:-21401205 Msa0805000:CDS
TCAGTGTCGAAAGGGTATTT+TGG 0.386014 5_3:-21400688 Msa0805000:CDS
GAAGAAAATTTAGTCTTGCT+TGG 0.393995 5_3:-21400917 Msa0805000:CDS
GTTGGAAACCCACATGCTTT+GGG 0.394384 5_3:-21403182 Msa0805000:CDS
ATTACCTCTCCCTAACAAAT+TGG 0.395849 5_3:+21399550 None:intergenic
AGCTTTAGAGACTGCTAAAC+AGG 0.401858 5_3:-21398798 Msa0805000:CDS
ATAAGAAATATCTCCAGGTT+TGG 0.402372 5_3:+21399575 None:intergenic
CAGATTATATTCACTAATGT+TGG 0.402510 5_3:-21403200 Msa0805000:CDS
ACTGGTATATCCACTGTTCC+TGG 0.403447 5_3:-21398728 Msa0805000:CDS
TTCTTCTATCAATCAATCTA+AGG 0.403616 5_3:-21405075 Msa0805000:intron
CCCAATTTGCTGTCTCTTCG+AGG 0.403674 5_3:+21401204 None:intergenic
TTACCAGACAAATATATATC+AGG 0.407014 5_3:-21400885 Msa0805000:CDS
GTAATATAGTTGTCCTCAAA+TGG 0.407820 5_3:+21397632 None:intergenic
ACAGGTTGTTGCCTTGTGCC+AGG 0.408208 5_3:-21402961 Msa0805000:intron
GGCCTAGCTTTAGGCTTAAA+GGG 0.411414 5_3:+21405330 None:intergenic
ACAATGTCCTTACACAATAT+GGG 0.423223 5_3:+21397043 None:intergenic
GACTCATAGTCTAAGGGCTT+TGG 0.425588 5_3:+21403879 None:intergenic
TAAGAAATATCTCCAGGTTT+GGG 0.432585 5_3:+21399576 None:intergenic
TGTATAGGGTGTTCCATTTG+AGG 0.439749 5_3:-21397645 Msa0805000:intron
CATCCTGATATATATTTGTC+TGG 0.447557 5_3:+21400882 None:intergenic
AAAAGTATAATTTATTTATG+TGG 0.448994 5_3:+21405198 None:intergenic
TTCTTATGACCAATTTGTTA+GGG 0.451705 5_3:-21399559 Msa0805000:CDS
GCAACAATTGCTCTTCTTGG+TGG 0.456592 5_3:-21401245 Msa0805000:CDS
CAGAGTAGAGTGGGTATTGT+GGG 0.463276 5_3:+21401267 None:intergenic
GCTCTTGCAATTGCATCAGC+GGG 0.466274 5_3:+21402897 None:intergenic
TCACTAAGGCACTGGCCAGT+AGG 0.479549 5_3:+21400974 None:intergenic
GCAGGCATTTCTTCCTCAGC+TGG 0.482109 5_3:+21397610 None:intergenic
TCAGGATTTGGACAGAAAGA+AGG 0.482360 5_3:-21398704 Msa0805000:CDS
TAATCAGAGGCGAAGGAGAT+GGG 0.482526 5_3:-21401390 Msa0805000:CDS
CACTAAGGCACTGGCCAGTA+GGG 0.482562 5_3:+21400975 None:intergenic
TTGAAACTATCCATAATAGC+AGG 0.483460 5_3:+21397592 None:intergenic
TGACTCCACTTAGTGGGATA+AGG 0.485347 5_3:-21397228 Msa0805000:three_prime_UTR
CAGAAAACCCATATTGTGTA+AGG 0.487673 5_3:-21397050 Msa0805000:three_prime_UTR
ACCACTGACCTTCCCTCGCC+AGG 0.489247 5_3:-21403153 Msa0805000:intron
CTCTTAAATTCTCTTCACTA+AGG 0.490455 5_3:+21400960 None:intergenic
GGCACAACATATAATAATAC+AGG 0.493819 5_3:+21397387 None:intergenic
TGGTCATAAGAAATATCTCC+AGG 0.495347 5_3:+21399570 None:intergenic
TATTATATGTTGTGCCATGA+TGG 0.503878 5_3:-21397380 Msa0805000:three_prime_UTR
ATGTAGCTGACTCCACTTAG+TGG 0.505129 5_3:-21397235 Msa0805000:three_prime_UTR
TAGAGTGGGTATTGTGGGAC+TGG 0.505840 5_3:+21401272 None:intergenic
ATGACCAATTTGTTAGGGAG+AGG 0.505997 5_3:-21399554 Msa0805000:intron
ATAAATCCTGGAAACCCTAC+TGG 0.506931 5_3:-21400989 Msa0805000:CDS
GGGAATAGCAGTCCAACGTT+AGG 0.507835 5_3:+21402918 None:intergenic
TACACTTGTTGTTTATCACT+CGG 0.509208 5_3:-21405101 Msa0805000:five_prime_UTR
GTTGTTTGTAATTTCACAGA+AGG 0.509314 5_3:-21398973 Msa0805000:intron
TTTAGTCTTGCTTGGAGATG+AGG 0.510094 5_3:-21400909 Msa0805000:CDS
TTTGCCCTCCTTCTGAAGCT+CGG 0.511768 5_3:+21403794 None:intergenic
GACTGCTAAACAGGCTGGAA+AGG 0.514421 5_3:-21398789 Msa0805000:CDS
ATGACCACAGAGGTTATTCA+AGG 0.516115 5_3:-21397537 Msa0805000:CDS
CTGATGGATTCAACAGCTGC+AGG 0.516393 5_3:-21398999 Msa0805000:CDS
GGTTTCTGTCCCAAAGCATG+TGG 0.516790 5_3:+21403173 None:intergenic
ATAATTTATTTATGTGGCAG+TGG 0.518005 5_3:+21405204 None:intergenic
CAGTATCTCTCATTCACATC+GGG 0.519894 5_3:-21402870 Msa0805000:CDS
AATTCTCTTCACTAAGGCAC+TGG 0.520921 5_3:+21400966 None:intergenic
GCAATGGTGATCATAAATCC+TGG 0.522716 5_3:-21401001 Msa0805000:CDS
GTCAATAGATAACAAGGCAT+TGG 0.525143 5_3:+21405357 None:intergenic
TATTTGAGGGAATGAATACA+TGG 0.526126 5_3:+21398835 None:intergenic
ATGATCAATCCACCCAAACC+TGG 0.527405 5_3:-21399588 Msa0805000:CDS
TTCTGTCCAAATCCTGAACC+AGG 0.537163 5_3:+21398710 None:intergenic
GATTAATGAAAACGTGAAGA+AGG 0.538917 5_3:-21403856 Msa0805000:CDS
TAACTCACAAATATTTGTGC+TGG 0.540144 5_3:+21399717 None:intergenic
AGGCACTCCAGCAGTGAGGA+AGG 0.545081 5_3:-21401646 Msa0805000:CDS
ACTAAGTGGAGTCAGCTACA+TGG 0.545846 5_3:+21397237 None:intergenic
ACAAACCTCTGGAGGAATGT+TGG 0.548308 5_3:+21400630 None:intergenic
TCCAGCAGTGAGGAAGGAAG+TGG 0.549120 5_3:-21401640 Msa0805000:CDS
CTGAGTGAAAAGAAACAAGC+TGG 0.550221 5_3:+21400707 None:intergenic
CAAAGCCTTATCCCACTAAG+TGG 0.550276 5_3:+21397223 None:intergenic
TCATAGTCTAAGGGCTTTGG+TGG 0.550561 5_3:+21403882 None:intergenic
TCAGTAAGATAGATGAACTC+TGG 0.550763 5_3:+21401451 None:intergenic
ATAATCAGAGGCGAAGGAGA+TGG 0.551065 5_3:-21401391 Msa0805000:CDS
TCTTACTGATGGTGCGAGCA+AGG 0.553432 5_3:-21401437 Msa0805000:CDS
CAATTGTTGCAGAGTAGAGT+GGG 0.553825 5_3:+21401258 None:intergenic
TTAGAGACTGCTAAACAGGC+TGG 0.555028 5_3:-21398794 Msa0805000:CDS
AGAGCAAGGATCATGACTGA+TGG 0.558706 5_3:-21399015 Msa0805000:CDS
GTGCTGAACCTGGCGAGGGA+AGG 0.564545 5_3:+21403145 None:intergenic
GAAATATCTCCAGGTTTGGG+TGG 0.567289 5_3:+21399579 None:intergenic
AGCTCTTGCAATTGCATCAG+CGG 0.568224 5_3:+21402896 None:intergenic
TTAGGATCATCAAGTAGGAA+TGG 0.568415 5_3:+21402936 None:intergenic
GACTTGTAAAACACAGGAGG+AGG 0.569552 5_3:+21397181 None:intergenic
CAACGTTAGGATCATCAAGT+AGG 0.572461 5_3:+21402931 None:intergenic
GCAATTGTTGCAGAGTAGAG+TGG 0.575484 5_3:+21401257 None:intergenic
GAGTTTATACAGAGGCGTGA+TGG 0.576593 5_3:-21401615 Msa0805000:CDS
AGCTACCGAGCTTCAGAAGG+AGG 0.578963 5_3:-21403799 Msa0805000:CDS
CAGGATTTGGACAGAAAGAA+GGG 0.579885 5_3:-21398703 Msa0805000:intron
GAGTTCATCTATCTTACTGA+TGG 0.582441 5_3:-21401448 Msa0805000:CDS
CTACTTGATGATCCTAACGT+TGG 0.583949 5_3:-21402930 Msa0805000:CDS
TCTTAGGACTTGTAAAACAC+AGG 0.590391 5_3:+21397175 None:intergenic
TATCTCTCATTCACATCGGG+TGG 0.591208 5_3:-21402867 Msa0805000:CDS
TTAATCGACTCATAGTCTAA+GGG 0.594837 5_3:+21403873 None:intergenic
TCGAGCTACCGAGCTTCAGA+AGG 0.594916 5_3:-21403802 Msa0805000:CDS
GTTTCTGTCCCAAAGCATGT+GGG 0.598610 5_3:+21403174 None:intergenic
TGGACTTCATTGCTTAAAGG+TGG 0.598641 5_3:+21400727 None:intergenic
TTGTCAGTGATATATAGAGA+AGG 0.600842 5_3:+21397439 None:intergenic
GCAGAGTAGAGTGGGTATTG+TGG 0.601349 5_3:+21401266 None:intergenic
AATACTATAATCAGAGGCGA+AGG 0.605176 5_3:-21401397 Msa0805000:CDS
TAGTGAAGAGAATTTAAGAG+AGG 0.607939 5_3:-21400957 Msa0805000:CDS
CATCAAGTAGGAATGGAGCC+TGG 0.610744 5_3:+21402943 None:intergenic
ACCTGGCGAGGGAAGGTCAG+TGG 0.613068 5_3:+21403152 None:intergenic
GGTAGTGTCAATAGATAACA+AGG 0.616111 5_3:+21405351 None:intergenic
TAGGAATGGAGCCTGGCACA+AGG 0.616418 5_3:+21402950 None:intergenic
TGTAGCTGACTCCACTTAGT+GGG 0.616710 5_3:-21397234 Msa0805000:three_prime_UTR
AAACCATATTTGTAAAACAC+AGG 0.621428 5_3:+21397288 None:intergenic
TCTGAAGCTCGGTAGCTCGA+AGG 0.628218 5_3:+21403805 None:intergenic
AATCGCTAAGAAGAAGAGCA+AGG 0.628553 5_3:-21399029 Msa0805000:CDS
GACAACTATATTACCAGCTG+AGG 0.628816 5_3:-21397623 Msa0805000:CDS
GCTACCGAGCTTCAGAAGGA+GGG 0.629811 5_3:-21403798 Msa0805000:CDS
AATCAGAGGCGAAGGAGATG+GGG 0.631418 5_3:-21401389 Msa0805000:intron
AAATCCTGAACCAGGAACAG+TGG 0.633972 5_3:+21398718 None:intergenic
ACTTCGAAAATCAGTTAGAG+AGG 0.636186 5_3:-21401165 Msa0805000:CDS
AATGACCAACATTCCTCCAG+AGG 0.636754 5_3:-21400635 Msa0805000:intron
CTCGAAGAGACAGCAAATTG+GGG 0.639287 5_3:-21401203 Msa0805000:CDS
GCAGTATCTCTCATTCACAT+CGG 0.640124 5_3:-21402871 Msa0805000:CDS
ATATTAAATACTATAATCAG+AGG 0.642923 5_3:-21401403 Msa0805000:CDS
ATGAAGAGACAAACCTCTGG+AGG 0.648436 5_3:+21400622 None:intergenic
AGTTGTGCTGAACCTGGCGA+GGG 0.653433 5_3:+21403141 None:intergenic
AAGGCTCAGTATGCTGTCAG+AGG 0.653659 5_3:-21403837 Msa0805000:CDS
TACCCTTTAAGCCTAAAGCT+AGG 0.658156 5_3:-21405332 Msa0805000:five_prime_UTR
TAGGACTTGTAAAACACAGG+AGG 0.661000 5_3:+21397178 None:intergenic
AGAGGCGTGATGGTTATCCA+AGG 0.667903 5_3:-21401605 Msa0805000:intron
AAGTGGCAGAGTTTATACAG+AGG 0.671960 5_3:-21401623 Msa0805000:CDS
TAGTTGTGCTGAACCTGGCG+AGG 0.681080 5_3:+21403140 None:intergenic
CTCGAGGCACTCCAGCAGTG+AGG 0.699635 5_3:-21401650 Msa0805000:CDS
GGTGAATGTGGACAACGTGG+TGG 0.701411 5_3:-21400667 Msa0805000:CDS
AGGAACAGTGGATATACCAG+TGG 0.702390 5_3:+21398730 None:intergenic
GGTGCATATAGTGATTCTCG+AGG 0.716938 5_3:-21401666 Msa0805000:CDS
CTCTTGCAATTGCATCAGCG+GGG 0.718034 5_3:+21402898 None:intergenic
TTTGGTGAATGTGGACAACG+TGG 0.726588 5_3:-21400670 Msa0805000:CDS
ACAACCTTGAATAACCTCTG+TGG 0.736073 5_3:+21397533 None:intergenic
GAACAATATGATGACCACAG+AGG 0.786019 5_3:-21397547 Msa0805000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAGTATAATTTATTTATG+TGG + chr5_3:21397350-21397369 None:intergenic 10.0%
!!! AAGTCAAATTATTTTTATAT+AGG + chr5_3:21404139-21404158 None:intergenic 10.0%
!!! TTTAAATAGAATATCTTTTT+AGG - chr5_3:21405438-21405457 Msa0805000:five_prime_UTR 10.0%
!!! TTTTGACTTTTGTTTTAATT+GGG - chr5_3:21397570-21397589 Msa0805000:CDS 15.0%
!!! AATAACTTGTTTTCAAATAT+TGG - chr5_3:21399322-21399341 Msa0805000:intron 15.0%
!! TCTAACAATTTAATTAAATG+TGG + chr5_3:21399494-21399513 None:intergenic 15.0%
!!! AAAAAAGTTTCTGAAAAATT+TGG - chr5_3:21399799-21399818 Msa0805000:intron 15.0%
!!! CAATCTATTTTTAAAATGTA+TGG + chr5_3:21400186-21400205 None:intergenic 15.0%
!!! AAGTCAAATTTTTATTAGAA+TGG - chr5_3:21400476-21400495 Msa0805000:intron 15.0%
!! ATATTAAATACTATAATCAG+AGG - chr5_3:21401142-21401161 Msa0805000:intron 15.0%
!!! TTATAAATTAAATTTTGACC+AGG - chr5_3:21401516-21401535 Msa0805000:intron 15.0%
!! CAATTAAAAAAAAAAAATGG+GGG + chr5_3:21402432-21402451 None:intergenic 15.0%
!! CCAATTAAAAAAAAAAAATG+GGG + chr5_3:21402433-21402452 None:intergenic 15.0%
!! CCCAATTAAAAAAAAAAAAT+GGG + chr5_3:21402434-21402453 None:intergenic 15.0%
!!! CCCATTTTTTTTTTTTAATT+GGG - chr5_3:21402431-21402450 Msa0805000:intron 15.0%
!! TCCCAATTAAAAAAAAAAAA+TGG + chr5_3:21402435-21402454 None:intergenic 15.0%
!!! ATCTTTTAAAAAATACTGTT+TGG - chr5_3:21404497-21404516 Msa0805000:intron 15.0%
!!! ACATAAATTTATTTTTTGAC+AGG + chr5_3:21405230-21405249 None:intergenic 15.0%
!!! TTTGTTGTATGTTTTAGATA+TGG + chr5_3:21397087-21397106 None:intergenic 20.0%
!!! TTTAGCTATAAATTTCAAGT+GGG + chr5_3:21397541-21397560 None:intergenic 20.0%
!!! TTTTAGCTATAAATTTCAAG+TGG + chr5_3:21397542-21397561 None:intergenic 20.0%
!!! CTTTTGACTTTTGTTTTAAT+TGG - chr5_3:21397569-21397588 Msa0805000:CDS 20.0%
!!! ATTTCCTCTTTGAATTATTT+TGG - chr5_3:21398565-21398584 Msa0805000:intron 20.0%
!! TATAATACACATTCAATGAA+AGG + chr5_3:21398883-21398902 None:intergenic 20.0%
!!! TGTATTTCTAATCTTTATGT+TGG - chr5_3:21399067-21399086 Msa0805000:intron 20.0%
!! CAAGTTATTTGAATAGAAAA+TGG + chr5_3:21399311-21399330 None:intergenic 20.0%
!! TCATATTACGAAAATTACAA+GGG + chr5_3:21399456-21399475 None:intergenic 20.0%
!! ATCATATTACGAAAATTACA+AGG + chr5_3:21399457-21399476 None:intergenic 20.0%
!!! ATTTGTTGATTATTCTATTG+TGG - chr5_3:21399528-21399547 Msa0805000:intron 20.0%
!! CAATTCATTGTTATATAATG+TGG - chr5_3:21399723-21399742 Msa0805000:intron 20.0%
!! AAAAACAAAGGATAATTGAA+TGG + chr5_3:21399950-21399969 None:intergenic 20.0%
!! TACAATCAATTAAAATGCTT+AGG + chr5_3:21399977-21399996 None:intergenic 20.0%
!! TTCATGAAACAAGTTTATTT+GGG + chr5_3:21400006-21400025 None:intergenic 20.0%
!!! GTTTATTTTATCTGTGAAAA+TGG + chr5_3:21400134-21400153 None:intergenic 20.0%
!!! ATTTTTACTTTGTATGTGTT+TGG + chr5_3:21400333-21400352 None:intergenic 20.0%
!! ACATACTGTTAGAAATTAAA+CGG - chr5_3:21400356-21400375 Msa0805000:intron 20.0%
!!! TCAAATTTTTATTAGAATGG+TGG - chr5_3:21400479-21400498 Msa0805000:intron 20.0%
!! ATATAAAATTCAGATGGTAA+TGG + chr5_3:21400734-21400753 None:intergenic 20.0%
!! AGTAAGATATAAAATTCAGA+TGG + chr5_3:21400740-21400759 None:intergenic 20.0%
!! TTGCAAAAACATCTTATAAA+CGG - chr5_3:21401005-21401024 Msa0805000:CDS 20.0%
!! TTAACTTAAATTTCAGTACA+AGG + chr5_3:21402151-21402170 None:intergenic 20.0%
!! TAATACAAGATGTAATCAAT+AGG - chr5_3:21402385-21402404 Msa0805000:intron 20.0%
!!! CCCCATTTTTTTTTTTTAAT+TGG - chr5_3:21402430-21402449 Msa0805000:intron 20.0%
!! TCAAAATCAAAATATTCGTT+CGG - chr5_3:21403044-21403063 Msa0805000:intron 20.0%
!! ATAATAAGTGCTAATGTATA+AGG + chr5_3:21404188-21404207 None:intergenic 20.0%
!! TTACGATTAAAAGGAAAAAT+AGG + chr5_3:21404314-21404333 None:intergenic 20.0%
!! ATCTTATCTTAAAAGAAGTT+GGG + chr5_3:21404523-21404542 None:intergenic 20.0%
!! TATCTTATCTTAAAAGAAGT+TGG + chr5_3:21404524-21404543 None:intergenic 20.0%
!! TTTACTTGTGAGATATATTA+AGG + chr5_3:21404575-21404594 None:intergenic 20.0%
!!! AACAGAAATTATTTTCCAAA+AGG + chr5_3:21404598-21404617 None:intergenic 20.0%
!!! AGTACAAATCTTTTAAAACA+GGG + chr5_3:21404654-21404673 None:intergenic 20.0%
!!! AGTTTTACAGCTAAAAATAT+AGG + chr5_3:21404694-21404713 None:intergenic 20.0%
!! GAAAAAAAAACTAAGGTTTA+AGG + chr5_3:21405087-21405106 None:intergenic 20.0%
!!! TATGTTTTAGATATGGTCTT+TGG + chr5_3:21397080-21397099 None:intergenic 25.0%
!! GGATTATTGAATTTTTGCAA+GGG + chr5_3:21397269-21397288 None:intergenic 25.0%
!! AGGATTATTGAATTTTTGCA+AGG + chr5_3:21397270-21397289 None:intergenic 25.0%
! ATAATTTATTTATGTGGCAG+TGG + chr5_3:21397344-21397363 None:intergenic 25.0%
! TTCTTCTATCAATCAATCTA+AGG - chr5_3:21397470-21397489 Msa0805000:three_prime_UTR 25.0%
! ACATCATACAAAACCAAAAA+CGG + chr5_3:21397624-21397643 None:intergenic 25.0%
!! ATGTGTTTTCTTCATGAATT+TGG - chr5_3:21397640-21397659 Msa0805000:CDS 25.0%
!!! TAGTCCATAGTTTTAAATTG+CGG - chr5_3:21398315-21398334 Msa0805000:intron 25.0%
! ATTTAACATGTAGTAGTGTA+AGG - chr5_3:21398484-21398503 Msa0805000:intron 25.0%
!! GTATAGTCAAATTTCTTTTC+TGG - chr5_3:21398777-21398796 Msa0805000:CDS 25.0%
! CATGAGAATCTATGAATAAT+TGG + chr5_3:21398947-21398966 None:intergenic 25.0%
! CAGATTATATTCACTAATGT+TGG - chr5_3:21399345-21399364 Msa0805000:intron 25.0%
! AATCAGTAAAAGTAGAAGTA+TGG + chr5_3:21399431-21399450 None:intergenic 25.0%
! CATATTACGAAAATTACAAG+GGG + chr5_3:21399455-21399474 None:intergenic 25.0%
! AAATTATATAGGTCAGCTTT+AGG + chr5_3:21399556-21399575 None:intergenic 25.0%
!!! TGACCTATATAATTTTTTCC+TGG - chr5_3:21399561-21399580 Msa0805000:CDS 25.0%
! TGTCCAGGAAAAAATTATAT+AGG + chr5_3:21399567-21399586 None:intergenic 25.0%
!!! TATATAATTTTTTCCTGGAC+AGG - chr5_3:21399566-21399585 Msa0805000:CDS 25.0%
! CTTCATGAAACAAGTTTATT+TGG + chr5_3:21400007-21400026 None:intergenic 25.0%
!! ATAAACTTGTTTCATGAAGA+TGG - chr5_3:21400008-21400027 Msa0805000:intron 25.0%
! CATACTGACAAAAGATATTT+GGG - chr5_3:21400037-21400056 Msa0805000:intron 25.0%
!! AAAACAAGTCCTTAAGATTT+TGG + chr5_3:21400092-21400111 None:intergenic 25.0%
! GTCTCTCTATTACAATAAAA+AGG - chr5_3:21400280-21400299 Msa0805000:intron 25.0%
! CTATCACATAGAAATATACA+TGG - chr5_3:21400656-21400675 Msa0805000:CDS 25.0%
!!! GTTTATAAGATGTTTTTGCA+AGG + chr5_3:21401006-21401025 None:intergenic 25.0%
! AATAATGTCTCTTTCTTCAA+AGG + chr5_3:21401494-21401513 None:intergenic 25.0%
! TTACCAGACAAATATATATC+AGG - chr5_3:21401660-21401679 Msa0805000:CDS 25.0%
!! TGAAGTAAAACATACCTTTT+TGG + chr5_3:21401707-21401726 None:intergenic 25.0%
!! GAAAATTAGAGTATTATCTC+AGG + chr5_3:21401767-21401786 None:intergenic 25.0%
!! CTAATTTTCTTTGCACAAAA+AGG - chr5_3:21401778-21401797 Msa0805000:intron 25.0%
!!! AAAAAGGTTTTGATGGATAT+GGG - chr5_3:21401794-21401813 Msa0805000:intron 25.0%
! TTAAATTTCAGTACAAGGTA+GGG + chr5_3:21402146-21402165 None:intergenic 25.0%
!!! ATGTTTAACAAGCTTTATTG+TGG - chr5_3:21402278-21402297 Msa0805000:intron 25.0%
! TGTAGAACATAGGTAAAAAT+GGG + chr5_3:21402927-21402946 None:intergenic 25.0%
!! TTTCTTATGACCAATTTGTT+AGG - chr5_3:21402985-21403004 Msa0805000:intron 25.0%
!!! TTCTTATGACCAATTTGTTA+GGG - chr5_3:21402986-21403005 Msa0805000:intron 25.0%
!!! CATTTAGCAAATTAGTCTTT+AGG + chr5_3:21403024-21403043 None:intergenic 25.0%
! NNNNNNNNNNCTCACACATG+TGG + chr5_3:21403207-21403226 None:intergenic 25.0%
! TCTATAATAATATGCAGCAA+AGG - chr5_3:21403485-21403504 Msa0805000:intron 25.0%
!! CAGAAGGTATAAATAAATGA+CGG - chr5_3:21403588-21403607 Msa0805000:intron 25.0%
! AAAACTCAATGGATCAATAA+TGG + chr5_3:21403681-21403700 None:intergenic 25.0%
! CTAAAAATGGCATAGAAAAA+GGG + chr5_3:21403904-21403923 None:intergenic 25.0%
! ATTCTGATTTAGCCTAAAAA+TGG + chr5_3:21403917-21403936 None:intergenic 25.0%
!!! ATTATTTTTCCACCATTCTA+AGG - chr5_3:21403935-21403954 Msa0805000:intron 25.0%
!!! TTATTTTTCCACCATTCTAA+GGG - chr5_3:21403936-21403955 Msa0805000:intron 25.0%
! AGCACTTATTATATCATAAG+TGG - chr5_3:21404196-21404215 Msa0805000:intron 25.0%
!! GTGAAGTATTAGATCATATT+TGG + chr5_3:21404254-21404273 None:intergenic 25.0%
!! AGTCTTATAAAACAGAAACA+GGG + chr5_3:21404355-21404374 None:intergenic 25.0%
!! AAGTCTTATAAAACAGAAAC+AGG + chr5_3:21404356-21404375 None:intergenic 25.0%
! TCTTGTATGAATAATTTGGT+TGG + chr5_3:21404456-21404475 None:intergenic 25.0%
! CTTGTCTTGTATGAATAATT+TGG + chr5_3:21404460-21404479 None:intergenic 25.0%
!!! CAGTACAAATCTTTTAAAAC+AGG + chr5_3:21404655-21404674 None:intergenic 25.0%
! AAGAAAACCAATAGAATGTA+CGG + chr5_3:21404846-21404865 None:intergenic 25.0%
! TATGTGCTAAACTTTGTATA+GGG - chr5_3:21404886-21404905 Msa0805000:intron 25.0%
! AAAGTTCAATGATGATTTCA+TGG - chr5_3:21404976-21404995 Msa0805000:intron 25.0%
! AAAAAACTAAGGTTTAAGGA+GGG + chr5_3:21405083-21405102 None:intergenic 25.0%
! AAAAAAACTAAGGTTTAAGG+AGG + chr5_3:21405084-21405103 None:intergenic 25.0%
! AGAGAAGGAAAAAAAAACTA+AGG + chr5_3:21405094-21405113 None:intergenic 25.0%
! AAACCATATTTGTAAAACAC+AGG + chr5_3:21405260-21405279 None:intergenic 25.0%
! AAAGCTTCAACCTTATTATT+TGG - chr5_3:21405393-21405412 Msa0805000:five_prime_UTR 25.0%
! AAGCTTCAACCTTATTATTT+GGG - chr5_3:21405394-21405413 Msa0805000:five_prime_UTR 25.0%
!!! TTGATTGTGTTTTGACACAT+TGG + chr5_3:21397154-21397173 None:intergenic 30.0%
!! AATGCTTGTGATTGATTTTG+TGG + chr5_3:21397239-21397258 None:intergenic 30.0%
! ATTGAATTTTTGCAAGGGAA+GGG + chr5_3:21397264-21397283 None:intergenic 30.0%
! TATTGAATTTTTGCAAGGGA+AGG + chr5_3:21397265-21397284 None:intergenic 30.0%
AATCATAGCCACTGAAAAAA+GGG + chr5_3:21397299-21397318 None:intergenic 30.0%
!! TACACTTGTTGTTTATCACT+CGG - chr5_3:21397444-21397463 Msa0805000:three_prime_UTR 30.0%
GGTCATTTCATCATGTTATA+TGG + chr5_3:21397520-21397539 None:intergenic 30.0%
!!! ATTGGGTTTGTGTTATTTTG+AGG - chr5_3:21397587-21397606 Msa0805000:CDS 30.0%
TCTATGTCATGATTTGATTG+TGG - chr5_3:21397665-21397684 Msa0805000:intron 30.0%
! ACTGTAGTAAGTTGAGAAAA+TGG - chr5_3:21397837-21397856 Msa0805000:intron 30.0%
! ACATGCTTTTGCATTTATAC+TGG - chr5_3:21397993-21398012 Msa0805000:intron 30.0%
TTTGTAATTGTACCATCATG+TGG - chr5_3:21398092-21398111 Msa0805000:intron 30.0%
! TAAAGTACTTAAAGAGTCCA+TGG - chr5_3:21398131-21398150 Msa0805000:intron 30.0%
TCATAGATCATAACATACCA+TGG + chr5_3:21398151-21398170 None:intergenic 30.0%
TTAATCCAACGGATAAGATT+TGG + chr5_3:21398200-21398219 None:intergenic 30.0%
CAACTGTTAGATTAATCCAA+CGG + chr5_3:21398211-21398230 None:intergenic 30.0%
!!! CTGCAATATAATGGTTTTAG+AGG - chr5_3:21398345-21398364 Msa0805000:intron 30.0%
ACTTTAAACTGTACATGTTG+CGG + chr5_3:21398374-21398393 None:intergenic 30.0%
AAAAATCAGTAAGATTGCAG+TGG - chr5_3:21398439-21398458 Msa0805000:intron 30.0%
CCAACCAAAATAATTCAAAG+AGG + chr5_3:21398572-21398591 None:intergenic 30.0%
!!! CCTCTTTGAATTATTTTGGT+TGG - chr5_3:21398569-21398588 Msa0805000:intron 30.0%
! TTAATCGACTCATAGTCTAA+GGG + chr5_3:21398675-21398694 None:intergenic 30.0%
! ATTAATCGACTCATAGTCTA+AGG + chr5_3:21398676-21398695 None:intergenic 30.0%
GATTAATGAAAACGTGAAGA+AGG - chr5_3:21398689-21398708 Msa0805000:intron 30.0%
! CATAGATTCTCATGCATTTT+TGG - chr5_3:21398953-21398972 Msa0805000:intron 30.0%
! GTCTATAAACTTGTTCAACA+AGG + chr5_3:21398997-21399016 None:intergenic 30.0%
CAAGTTTATAGACTTTAGCA+TGG - chr5_3:21399004-21399023 Msa0805000:CDS 30.0%
AATGGTAGTATGTTACACTT+CGG - chr5_3:21399038-21399057 Msa0805000:CDS 30.0%
! CTTTTAAGCAATCCAATCTT+GGG + chr5_3:21399187-21399206 None:intergenic 30.0%
AAAAGTAACAGAACATTGAC+TGG + chr5_3:21399848-21399867 None:intergenic 30.0%
!! TAAAGGTACCTCAAAATGTA+TGG + chr5_3:21399911-21399930 None:intergenic 30.0%
TGCTTAGGAAAGAAAAACAA+AGG + chr5_3:21399962-21399981 None:intergenic 30.0%
! CCAAATATCTTTTGTCAGTA+TGG + chr5_3:21400039-21400058 None:intergenic 30.0%
CCATACTGACAAAAGATATT+TGG - chr5_3:21400036-21400055 Msa0805000:intron 30.0%
!! CCTTAAGATTTTGGTATAGT+TGG + chr5_3:21400083-21400102 None:intergenic 30.0%
CCAACTATACCAAAATCTTA+AGG - chr5_3:21400080-21400099 Msa0805000:intron 30.0%
AAACATCAGAGAAGACATTA+TGG - chr5_3:21400150-21400169 Msa0805000:intron 30.0%
TGTAATAGAGAGACAATGTA+AGG + chr5_3:21400274-21400293 None:intergenic 30.0%
! ATTTGACTTTGAACACAATG+TGG + chr5_3:21400465-21400484 None:intergenic 30.0%
! TTACTAATTGAACCAGCTTT+TGG + chr5_3:21400558-21400577 None:intergenic 30.0%
TTCTATGTGATAGATTGCAA+GGG + chr5_3:21400649-21400668 None:intergenic 30.0%
TTTCTATGTGATAGATTGCA+AGG + chr5_3:21400650-21400669 None:intergenic 30.0%
AGAATTGGAAAATTGCTACA+GGG + chr5_3:21400775-21400794 None:intergenic 30.0%
AAGAATTGGAAAATTGCTAC+AGG + chr5_3:21400776-21400795 None:intergenic 30.0%
TCTGTTATAACGAGAAGAAT+TGG + chr5_3:21400790-21400809 None:intergenic 30.0%
TGGAGCATAAATAAATACCT+TGG + chr5_3:21400960-21400979 None:intergenic 30.0%
AGTAGAAAAAATTGTGAGTG+TGG + chr5_3:21400980-21400999 None:intergenic 30.0%
! TGTTCAGTTTCCAATTTGTT+AGG - chr5_3:21401033-21401052 Msa0805000:intron 30.0%
!! AGTTTCCAATTTGTTAGGAA+AGG - chr5_3:21401038-21401057 Msa0805000:intron 30.0%
AATCACCTTTCCTAACAAAT+TGG + chr5_3:21401046-21401065 None:intergenic 30.0%
! AATCTGGCAATAAAAAGTGT+TGG + chr5_3:21401247-21401266 None:intergenic 30.0%
!! CACTTTTTATTGCCAGATTA+TGG - chr5_3:21401248-21401267 Msa0805000:CDS 30.0%
CTCTTAAATTCTCTTCACTA+AGG + chr5_3:21401588-21401607 None:intergenic 30.0%
TAGTGAAGAGAATTTAAGAG+AGG - chr5_3:21401588-21401607 Msa0805000:intron 30.0%
!! GAAGAAAATTTAGTCTTGCT+TGG - chr5_3:21401628-21401647 Msa0805000:CDS 30.0%
CATCCTGATATATATTTGTC+TGG + chr5_3:21401666-21401685 None:intergenic 30.0%
!! TTTGCACAAAAAGGTTTTGA+TGG - chr5_3:21401787-21401806 Msa0805000:intron 30.0%
!! CAAAAAGGTTTTGATGGATA+TGG - chr5_3:21401793-21401812 Msa0805000:intron 30.0%
!! AAAAGGTTTTGATGGATATG+GGG - chr5_3:21401795-21401814 Msa0805000:intron 30.0%
CTTAAATTTCAGTACAAGGT+AGG + chr5_3:21402147-21402166 None:intergenic 30.0%
ATGGAGTTCAAATTCCTTTA+GGG + chr5_3:21402509-21402528 None:intergenic 30.0%
AGTTAAACTTTGAACCTCAA+GGG + chr5_3:21402532-21402551 None:intergenic 30.0%
!! CGAACTGAATATTTTTGCTA+TGG - chr5_3:21402604-21402623 Msa0805000:intron 30.0%
AATATTTGTGCTGGAACATT+TGG + chr5_3:21402822-21402841 None:intergenic 30.0%
TAACTCACAAATATTTGTGC+TGG + chr5_3:21402831-21402850 None:intergenic 30.0%
ACATAGGTAAAAATGGGAAA+GGG + chr5_3:21402921-21402940 None:intergenic 30.0%
AACATAGGTAAAAATGGGAA+AGG + chr5_3:21402922-21402941 None:intergenic 30.0%
CTGTAGAACATAGGTAAAAA+TGG + chr5_3:21402928-21402947 None:intergenic 30.0%
! TTTTACCTATGTTCTACAGA+TGG - chr5_3:21402929-21402948 Msa0805000:CDS 30.0%
TTTACCTATGTTCTACAGAT+GGG - chr5_3:21402930-21402949 Msa0805000:CDS 30.0%
TAAGAAATATCTCCAGGTTT+GGG + chr5_3:21402972-21402991 None:intergenic 30.0%
ATAAGAAATATCTCCAGGTT+TGG + chr5_3:21402973-21402992 None:intergenic 30.0%
TGATCTAAGTCGTAAAAAGA+CGG - chr5_3:21403433-21403452 Msa0805000:intron 30.0%
GTTGTTTGTAATTTCACAGA+AGG - chr5_3:21403572-21403591 Msa0805000:intron 30.0%
TCATGTTACAGCAACATTAT+TGG - chr5_3:21403636-21403655 Msa0805000:intron 30.0%
TATTTGAGGGAATGAATACA+TGG + chr5_3:21403713-21403732 None:intergenic 30.0%
CCTAAAAATGGCATAGAAAA+AGG + chr5_3:21403905-21403924 None:intergenic 30.0%
!!! CCTTTTTCTATGCCATTTTT+AGG - chr5_3:21403902-21403921 Msa0805000:exon 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr5_3:21403972-21403991 Msa0805000:intron 30.0%
! TGAGCAGTTTTACGATTAAA+AGG + chr5_3:21404323-21404342 None:intergenic 30.0%
TAAAAATGTGTCAGACCAAA+TGG - chr5_3:21404547-21404566 Msa0805000:intron 30.0%
AGATATATTAAGGCTCCATT+TGG + chr5_3:21404565-21404584 None:intergenic 30.0%
! TATCTCACAAGTAAACCTTT+TGG - chr5_3:21404580-21404599 Msa0805000:intron 30.0%
CTATGTGCTAAACTTTGTAT+AGG - chr5_3:21404885-21404904 Msa0805000:intron 30.0%
GTAATATAGTTGTCCTCAAA+TGG + chr5_3:21404916-21404935 None:intergenic 30.0%
TTGAAACTATCCATAATAGC+AGG + chr5_3:21404956-21404975 None:intergenic 30.0%
TTGTCAGTGATATATAGAGA+AGG + chr5_3:21405109-21405128 None:intergenic 30.0%
GGCACAACATATAATAATAC+AGG + chr5_3:21405161-21405180 None:intergenic 30.0%
TATTATATGTTGTGCCATGA+TGG - chr5_3:21405165-21405184 Msa0805000:five_prime_UTR 30.0%
! TGTCCTGTGTTTTACAAATA+TGG - chr5_3:21405254-21405273 Msa0805000:five_prime_UTR 30.0%
! ATAAGGTTGAAGCTTTTCTT+AGG + chr5_3:21405389-21405408 None:intergenic 30.0%
ACAATGTCCTTACACAATAT+GGG + chr5_3:21405505-21405524 None:intergenic 30.0%
TACAATGTCCTTACACAATA+TGG + chr5_3:21405506-21405525 None:intergenic 30.0%
!!! GATGTGTCATTTTCTTTTGG+TGG + chr5_3:21397130-21397149 None:intergenic 35.0%
!!! GGAGATGTGTCATTTTCTTT+TGG + chr5_3:21397133-21397152 None:intergenic 35.0%
GTCAATAGATAACAAGGCAT+TGG + chr5_3:21397191-21397210 None:intergenic 35.0%
GGTAGTGTCAATAGATAACA+AGG + chr5_3:21397197-21397216 None:intergenic 35.0%
CACTGAAAAAAGGGTTCAAA+AGG + chr5_3:21397290-21397309 None:intergenic 35.0%
!!! CTTTTGAACCCTTTTTTCAG+TGG - chr5_3:21397288-21397307 Msa0805000:three_prime_UTR 35.0%
GAATCATAGCCACTGAAAAA+AGG + chr5_3:21397300-21397319 None:intergenic 35.0%
!!! GGATTCTTGTTTTCCGTTTT+TGG - chr5_3:21397608-21397627 Msa0805000:CDS 35.0%
! TGTTTGTTCACCTCCTTTTT+CGG - chr5_3:21397717-21397736 Msa0805000:intron 35.0%
AACTGCAAAGAAACCGAAAA+AGG + chr5_3:21397733-21397752 None:intergenic 35.0%
AACTGTTGAACAACGAACAA+AGG - chr5_3:21397908-21397927 Msa0805000:intron 35.0%
! AAAGGTTCAATCTGAAGTGT+CGG - chr5_3:21397926-21397945 Msa0805000:intron 35.0%
TAAGATTTGGAAAGAGAGGA+TGG + chr5_3:21398187-21398206 None:intergenic 35.0%
TCTTTCCAAATCTTATCCGT+TGG - chr5_3:21398192-21398211 Msa0805000:intron 35.0%
! TCTAACAGTTGAGATTTTGC+TGG - chr5_3:21398220-21398239 Msa0805000:intron 35.0%
! ATTTTGCTGGAGAGACATAA+GGG - chr5_3:21398233-21398252 Msa0805000:intron 35.0%
ACCATGTTGTGTATGATTGT+AGG - chr5_3:21398265-21398284 Msa0805000:intron 35.0%
TCCTACAATCATACACAACA+TGG + chr5_3:21398269-21398288 None:intergenic 35.0%
AAACCATTATATTGCAGCAG+CGG + chr5_3:21398342-21398361 None:intergenic 35.0%
CAGTGTTAGATCTTACTAGA+CGG - chr5_3:21398528-21398547 Msa0805000:intron 35.0%
CATACTACCATTACCATGAT+GGG + chr5_3:21399030-21399049 None:intergenic 35.0%
ACATACTACCATTACCATGA+TGG + chr5_3:21399031-21399050 None:intergenic 35.0%
ATGGTAGTATGTTACACTTC+GGG - chr5_3:21399039-21399058 Msa0805000:CDS 35.0%
GAACTTGTATATCCCAAGAT+TGG - chr5_3:21399172-21399191 Msa0805000:intron 35.0%
! CCTTTTAAGCAATCCAATCT+TGG + chr5_3:21399188-21399207 None:intergenic 35.0%
CCAAGATTGGATTGCTTAAA+AGG - chr5_3:21399185-21399204 Msa0805000:intron 35.0%
TTAGGATCATCAAGTAGGAA+TGG + chr5_3:21399612-21399631 None:intergenic 35.0%
! GACTATGACCATACATTTTG+AGG - chr5_3:21399900-21399919 Msa0805000:intron 35.0%
! TGAGGTACCTTTAATATCTG+CGG - chr5_3:21399918-21399937 Msa0805000:intron 35.0%
GAAAACTCCGCAGATATTAA+AGG + chr5_3:21399928-21399947 None:intergenic 35.0%
! TGTTTGGCTAGTAGACATTT+TGG + chr5_3:21400317-21400336 None:intergenic 35.0%
AATCCATCAGCTAACAACTT+AGG + chr5_3:21400384-21400403 None:intergenic 35.0%
TGGAGCATGAGAAAATACAT+AGG - chr5_3:21400433-21400452 Msa0805000:intron 35.0%
! TTATTAGAATGGTGGCGAAA+AGG - chr5_3:21400487-21400506 Msa0805000:intron 35.0%
AATCCAACTATTCCAAAAGC+TGG - chr5_3:21400543-21400562 Msa0805000:intron 35.0%
AGCAACGATTGCTATATTGT+AGG - chr5_3:21400858-21400877 Msa0805000:CDS 35.0%
TCAGTAAGATAGATGAACTC+TGG + chr5_3:21401097-21401116 None:intergenic 35.0%
GAGTTCATCTATCTTACTGA+TGG - chr5_3:21401097-21401116 Msa0805000:intron 35.0%
AATACTATAATCAGAGGCGA+AGG - chr5_3:21401148-21401167 Msa0805000:CDS 35.0%
! ATGTGACTACAGAAAAGTAC+TGG + chr5_3:21401200-21401219 None:intergenic 35.0%
ACTTCGAAAATCAGTTAGAG+AGG - chr5_3:21401380-21401399 Msa0805000:intron 35.0%
! TTTTGACCAGGTTAAAGCAA+TGG - chr5_3:21401528-21401547 Msa0805000:intron 35.0%
!! ACCTTTTTGGCACTAATGAA+GGG + chr5_3:21401694-21401713 None:intergenic 35.0%
!! TACCTTTTTGGCACTAATGA+AGG + chr5_3:21401695-21401714 None:intergenic 35.0%
!!! AAAGGGTATTTTGGTGAATG+TGG - chr5_3:21401866-21401885 Msa0805000:intron 35.0%
ATTATGAAGAGACAAACCTC+TGG + chr5_3:21401929-21401948 None:intergenic 35.0%
TAGAAAAATGAGAGCAAGCA+AGG - chr5_3:21402174-21402193 Msa0805000:intron 35.0%
GGATCAAACTCTAGACTATA+CGG - chr5_3:21402195-21402214 Msa0805000:intron 35.0%
AACAGCTTAAACTTGTGAGA+TGG + chr5_3:21402226-21402245 None:intergenic 35.0%
GATGGTTGTAAAACGATCAT+TGG + chr5_3:21402487-21402506 None:intergenic 35.0%
! AGTTCAAATTCCTTTAGGGA+TGG + chr5_3:21402505-21402524 None:intergenic 35.0%
GATGGAGTTCAAATTCCTTT+AGG + chr5_3:21402510-21402529 None:intergenic 35.0%
GAGTTAAACTTTGAACCTCA+AGG + chr5_3:21402533-21402552 None:intergenic 35.0%
AGACATCATGAAACAGTACA+TGG - chr5_3:21402567-21402586 Msa0805000:intron 35.0%
GTAGCTACAGCAAAAATTGA+AGG + chr5_3:21402717-21402736 None:intergenic 35.0%
ACTGTCTGCAAAAGAAAATG+AGG + chr5_3:21402762-21402781 None:intergenic 35.0%
TGGTCATAAGAAATATCTCC+AGG + chr5_3:21402978-21402997 None:intergenic 35.0%
ATTACCTCTCCCTAACAAAT+TGG + chr5_3:21402998-21403017 None:intergenic 35.0%
! GTTAACTTCCGTTTTCTGTA+GGG - chr5_3:21403066-21403085 Msa0805000:intron 35.0%
GAATACAACCCTACAGAAAA+CGG + chr5_3:21403077-21403096 None:intergenic 35.0%
TGTCTGACATATGTCAGTAT+CGG + chr5_3:21403334-21403353 None:intergenic 35.0%
! ACATTTGGAAAGGTGTATGA+GGG + chr5_3:21403412-21403431 None:intergenic 35.0%
CTTAGATCAGACATTTGGAA+AGG + chr5_3:21403422-21403441 None:intergenic 35.0%
TACGACTTAGATCAGACATT+TGG + chr5_3:21403427-21403446 None:intergenic 35.0%
TGCTGTAACATGAGAATACA+TGG + chr5_3:21403629-21403648 None:intergenic 35.0%
! GCAACATTATTGGACTGTTT+TGG - chr5_3:21403646-21403665 Msa0805000:intron 35.0%
TGGATCAATAATGGTTTACC+AGG + chr5_3:21403672-21403691 None:intergenic 35.0%
!!! TGATCCATTGAGTTTTGTTC+AGG - chr5_3:21403685-21403704 Msa0805000:intron 35.0%
!!! TTGGTGGCAGTTTTATTTGA+GGG + chr5_3:21403726-21403745 None:intergenic 35.0%
!!! TTTGGTGGCAGTTTTATTTG+AGG + chr5_3:21403727-21403746 None:intergenic 35.0%
!!! TTAGCAGTCTCTAAAGCTTT+TGG + chr5_3:21403745-21403764 None:intergenic 35.0%
! TTACTACTGTCTCAAGCTTT+TGG - chr5_3:21403789-21403808 Msa0805000:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + chr5_3:21404053-21404072 None:intergenic 35.0%
TACTTCACTAGTAAACCTCT+CGG - chr5_3:21404266-21404285 Msa0805000:intron 35.0%
! AGAAGAAAAAGTTTTCCGAG+AGG + chr5_3:21404284-21404303 None:intergenic 35.0%
AATAGAATGTACGGTCTGAT+TGG + chr5_3:21404837-21404856 None:intergenic 35.0%
AATCAGACCGTACATTCTAT+TGG - chr5_3:21404836-21404855 Msa0805000:intron 35.0%
! ATGGGATCGATTGAACTTTT+AGG + chr5_3:21405049-21405068 None:intergenic 35.0%
AAGATGATTGTTTGCCATCA+TGG + chr5_3:21405182-21405201 None:intergenic 35.0%
TCTTAGGACTTGTAAAACAC+AGG + chr5_3:21405373-21405392 None:intergenic 35.0%
TCGTCATCTCCCAAATAATA+AGG + chr5_3:21405406-21405425 None:intergenic 35.0%
CAGAAAACCCATATTGTGTA+AGG - chr5_3:21405495-21405514 Msa0805000:five_prime_UTR 35.0%
!! GTCATTTTCTTTTGGTGGAG+TGG + chr5_3:21397125-21397144 None:intergenic 40.0%
TACCCTTTAAGCCTAAAGCT+AGG - chr5_3:21397213-21397232 Msa0805000:three_prime_UTR 40.0%
!! TGATTTTGTGGCCTAGCTTT+AGG + chr5_3:21397227-21397246 None:intergenic 40.0%
TGCAAAGAAACCGAAAAAGG+AGG + chr5_3:21397730-21397749 None:intergenic 40.0%
ATAGACACAACATCGATACG+TGG - chr5_3:21397814-21397833 Msa0805000:intron 40.0%
GTTCAACAGTTATCAGACAC+CGG + chr5_3:21397899-21397918 None:intergenic 40.0%
!!! CTGTGCATAGGTTTTGAGTT+GGG - chr5_3:21397949-21397968 Msa0805000:intron 40.0%
!!! TGTGCATAGGTTTTGAGTTG+GGG - chr5_3:21397950-21397969 Msa0805000:intron 40.0%
CGGATAAGATTTGGAAAGAG+AGG + chr5_3:21398191-21398210 None:intergenic 40.0%
! GATTTTGCTGGAGAGACATA+AGG - chr5_3:21398232-21398251 Msa0805000:intron 40.0%
! CGGACCGCAATTTAAAACTA+TGG + chr5_3:21398322-21398341 None:intergenic 40.0%
!! TCTGCTTGACTTGCACTTAT+AGG - chr5_3:21398820-21398839 Msa0805000:CDS 40.0%
!! CTTGACTTGCACTTATAGGT+TGG - chr5_3:21398824-21398843 Msa0805000:CDS 40.0%
!! TGCACTTATAGGTTGGTTGA+AGG - chr5_3:21398831-21398850 Msa0805000:CDS 40.0%
AAACTGATGTGCTTTGACGA+AGG + chr5_3:21399098-21399117 None:intergenic 40.0%
CTCGTTAAATTTCAAGCAGC+TGG + chr5_3:21399133-21399152 None:intergenic 40.0%
CAACGTTAGGATCATCAAGT+AGG + chr5_3:21399617-21399636 None:intergenic 40.0%
! CTACTTGATGATCCTAACGT+TGG - chr5_3:21399615-21399634 Msa0805000:intron 40.0%
GCAGTATCTCTCATTCACAT+CGG - chr5_3:21399674-21399693 Msa0805000:intron 40.0%
CAGTATCTCTCATTCACATC+GGG - chr5_3:21399675-21399694 Msa0805000:intron 40.0%
!! GCTAGTAGACATTTTGGTCA+TGG + chr5_3:21400311-21400330 None:intergenic 40.0%
GTTCCTAAGTTGTTAGCTGA+TGG - chr5_3:21400378-21400397 Msa0805000:intron 40.0%
TGGATTGTGAGTGGTTCATA+AGG - chr5_3:21400398-21400417 Msa0805000:intron 40.0%
GGATTGTGAGTGGTTCATAA+GGG - chr5_3:21400399-21400418 Msa0805000:intron 40.0%
!! AAAGGTTGACGTTTTGGTCA+TGG - chr5_3:21400505-21400524 Msa0805000:intron 40.0%
!!! GAACCAGCTTTTGGAATAGT+TGG + chr5_3:21400549-21400568 None:intergenic 40.0%
CAAGCTAGAACAATCTTGCT+AGG + chr5_3:21400698-21400717 None:intergenic 40.0%
AAGTGGCAGAGTTTATACAG+AGG - chr5_3:21400922-21400941 Msa0805000:CDS 40.0%
CTCTGGATCACTACAAATAG+AGG + chr5_3:21401080-21401099 None:intergenic 40.0%
CAATTGTTGCAGAGTAGAGT+GGG + chr5_3:21401290-21401309 None:intergenic 40.0%
TCTGCAACAATTGCTCTTCT+TGG - chr5_3:21401297-21401316 Msa0805000:intron 40.0%
TGATCACCATTGCTTTAACC+TGG + chr5_3:21401537-21401556 None:intergenic 40.0%
GCAATGGTGATCATAAATCC+TGG - chr5_3:21401544-21401563 Msa0805000:intron 40.0%
ATAAATCCTGGAAACCCTAC+TGG - chr5_3:21401556-21401575 Msa0805000:intron 40.0%
AATTCTCTTCACTAAGGCAC+TGG + chr5_3:21401582-21401601 None:intergenic 40.0%
!! TTTAGTCTTGCTTGGAGATG+AGG - chr5_3:21401636-21401655 Msa0805000:CDS 40.0%
ACCCTTCATTAGTGCCAAAA+AGG - chr5_3:21401690-21401709 Msa0805000:intron 40.0%
TGGACTTCATTGCTTAAAGG+TGG + chr5_3:21401821-21401840 None:intergenic 40.0%
AGCTGGACTTCATTGCTTAA+AGG + chr5_3:21401824-21401843 None:intergenic 40.0%
CTGAGTGAAAAGAAACAAGC+TGG + chr5_3:21401841-21401860 None:intergenic 40.0%
!! TCTTTTCACTCAGTGTCGAA+AGG - chr5_3:21401848-21401867 Msa0805000:intron 40.0%
!! CTTTTCACTCAGTGTCGAAA+GGG - chr5_3:21401849-21401868 Msa0805000:intron 40.0%
!!! TCAGTGTCGAAAGGGTATTT+TGG - chr5_3:21401857-21401876 Msa0805000:intron 40.0%
TTTCTTGCTGAGTGTTAAGC+TGG - chr5_3:21401963-21401982 Msa0805000:intron 40.0%
TACACGTTTCAAGCTCTGTA+GGG + chr5_3:21402108-21402127 None:intergenic 40.0%
ATACACGTTTCAAGCTCTGT+AGG + chr5_3:21402109-21402128 None:intergenic 40.0%
AATTTCAGTACAAGGTAGGG+TGG + chr5_3:21402143-21402162 None:intergenic 40.0%
! CGTTTTACAACCATCCCTAA+AGG - chr5_3:21402492-21402511 Msa0805000:intron 40.0%
AATTTGAACTCCATCCCTTG+AGG - chr5_3:21402515-21402534 Msa0805000:intron 40.0%
AAACTTTGAACCTCAAGGGA+TGG + chr5_3:21402528-21402547 None:intergenic 40.0%
TGCCTGTTGTCTAGACATAT+AGG - chr5_3:21402649-21402668 Msa0805000:intron 40.0%
GTCCTATATGTCTAGACAAC+AGG + chr5_3:21402654-21402673 None:intergenic 40.0%
CACTTGCATGTTAAGTCAGA+TGG + chr5_3:21402676-21402695 None:intergenic 40.0%
TAGTCCCATCTGTAGAACAT+AGG + chr5_3:21402937-21402956 None:intergenic 40.0%
!! ATGACCAATTTGTTAGGGAG+AGG - chr5_3:21402991-21403010 Msa0805000:intron 40.0%
! GGTTAACTTCCGTTTTCTGT+AGG - chr5_3:21403065-21403084 Msa0805000:intron 40.0%
GTCAGTGTCAGTATTGTGTT+CGG + chr5_3:21403135-21403154 None:intergenic 40.0%
! GACATTTGGAAAGGTGTATG+AGG + chr5_3:21403413-21403432 None:intergenic 40.0%
TCGTAAAAAGACGGCTCTTT+AGG - chr5_3:21403442-21403461 Msa0805000:intron 40.0%
AATCGCTAAGAAGAAGAGCA+AGG - chr5_3:21403516-21403535 Msa0805000:intron 40.0%
!!! ATTATTGGACTGTTTTGGCC+TGG - chr5_3:21403651-21403670 Msa0805000:intron 40.0%
!! AGCTTTAGAGACTGCTAAAC+AGG - chr5_3:21403747-21403766 Msa0805000:intron 40.0%
TCAGGATTTGGACAGAAAGA+AGG - chr5_3:21403841-21403860 Msa0805000:CDS 40.0%
CAGGATTTGGACAGAAAGAA+GGG - chr5_3:21403842-21403861 Msa0805000:CDS 40.0%
ATCCAAACAGACCCTTAGAA+TGG + chr5_3:21403950-21403969 None:intergenic 40.0%
CTTATTTCCATAAGCTGTCC+AGG - chr5_3:21404067-21404086 Msa0805000:intron 40.0%
TAGAGCTTATGGAACTATCC+TGG + chr5_3:21404088-21404107 None:intergenic 40.0%
GATAGTTCCATAAGCTCTAC+AGG - chr5_3:21404089-21404108 Msa0805000:intron 40.0%
ATGCTATCCTGTAGAGCTTA+TGG + chr5_3:21404099-21404118 None:intergenic 40.0%
! TGTATAGGGTGTTCCATTTG+AGG - chr5_3:21404900-21404919 Msa0805000:intron 40.0%
GACAACTATATTACCAGCTG+AGG - chr5_3:21404922-21404941 Msa0805000:intron 40.0%
GGAAGAAATGCCTGCTATTA+TGG - chr5_3:21404943-21404962 Msa0805000:intron 40.0%
GAACAATATGATGACCACAG+AGG - chr5_3:21404998-21405017 Msa0805000:intron 40.0%
ATGACCACAGAGGTTATTCA+AGG - chr5_3:21405008-21405027 Msa0805000:intron 40.0%
ACAACCTTGAATAACCTCTG+TGG + chr5_3:21405015-21405034 None:intergenic 40.0%
!! AGGAGGGTATGTTTTTCGAT+GGG + chr5_3:21405067-21405086 None:intergenic 40.0%
!! AAGGAGGGTATGTTTTTCGA+TGG + chr5_3:21405068-21405087 None:intergenic 40.0%
TAGGACTTGTAAAACACAGG+AGG + chr5_3:21405370-21405389 None:intergenic 40.0%
!! GGCCTAGCTTTAGGCTTAAA+GGG + chr5_3:21397218-21397237 None:intergenic 45.0%
!! TGGCCTAGCTTTAGGCTTAA+AGG + chr5_3:21397219-21397238 None:intergenic 45.0%
!!! GCTGTGCATAGGTTTTGAGT+TGG - chr5_3:21397948-21397967 Msa0805000:intron 45.0%
!!! GTGCATAGGTTTTGAGTTGG+GGG - chr5_3:21397951-21397970 Msa0805000:intron 45.0%
ACACAGCATATGCCACATGA+TGG + chr5_3:21398107-21398126 None:intergenic 45.0%
! TCATAGTCTAAGGGCTTTGG+TGG + chr5_3:21398666-21398685 None:intergenic 45.0%
GACTCATAGTCTAAGGGCTT+TGG + chr5_3:21398669-21398688 None:intergenic 45.0%
GTTCAACAAGGTCACACTTG+TGG + chr5_3:21398985-21399004 None:intergenic 45.0%
TGTTGGAAACCCACATGCTT+TGG - chr5_3:21399362-21399381 Msa0805000:intron 45.0%
GTTGGAAACCCACATGCTTT+GGG - chr5_3:21399363-21399382 Msa0805000:intron 45.0%
GTTTCTGTCCCAAAGCATGT+GGG + chr5_3:21399374-21399393 None:intergenic 45.0%
TATGGTAGTTGTGCTGAACC+TGG + chr5_3:21399413-21399432 None:intergenic 45.0%
AGCTCTTGCAATTGCATCAG+CGG + chr5_3:21399652-21399671 None:intergenic 45.0%
TATCTCTCATTCACATCGGG+TGG - chr5_3:21399678-21399697 Msa0805000:intron 45.0%
TCATTCACATCGGGTGGTTT+AGG - chr5_3:21399684-21399703 Msa0805000:intron 45.0%
!! GTTAGCTGATGGATTGTGAG+TGG - chr5_3:21400389-21400408 Msa0805000:intron 45.0%
TCTCATGCTCCAAAGCCTTA+GGG + chr5_3:21400425-21400444 None:intergenic 45.0%
TTCTCATGCTCCAAAGCCTT+AGG + chr5_3:21400426-21400445 None:intergenic 45.0%
! TGGCGAAAAGGTTGACGTTT+TGG - chr5_3:21400499-21400518 Msa0805000:intron 45.0%
!! GTTGACGTTTTGGTCATGGA+GGG - chr5_3:21400509-21400528 Msa0805000:intron 45.0%
GGTGCATATAGTGATTCTCG+AGG - chr5_3:21400879-21400898 Msa0805000:CDS 45.0%
! GAGTTTATACAGAGGCGTGA+TGG - chr5_3:21400930-21400949 Msa0805000:CDS 45.0%
ATAATCAGAGGCGAAGGAGA+TGG - chr5_3:21401154-21401173 Msa0805000:CDS 45.0%
TAATCAGAGGCGAAGGAGAT+GGG - chr5_3:21401155-21401174 Msa0805000:CDS 45.0%
! CAGAGTAGAGTGGGTATTGT+GGG + chr5_3:21401281-21401300 None:intergenic 45.0%
GCAATTGTTGCAGAGTAGAG+TGG + chr5_3:21401291-21401310 None:intergenic 45.0%
GCAACAATTGCTCTTCTTGG+TGG - chr5_3:21401300-21401319 Msa0805000:intron 45.0%
ACCTCGAAGAGACAGCAAAT+TGG - chr5_3:21401340-21401359 Msa0805000:intron 45.0%
CCTCGAAGAGACAGCAAATT+GGG - chr5_3:21401341-21401360 Msa0805000:intron 45.0%
CTCGAAGAGACAGCAAATTG+GGG - chr5_3:21401342-21401361 Msa0805000:intron 45.0%
GTTAGAGAGGCTCGCTATAA+AGG - chr5_3:21401393-21401412 Msa0805000:CDS 45.0%
TTTGGTGAATGTGGACAACG+TGG - chr5_3:21401875-21401894 Msa0805000:intron 45.0%
AATGACCAACATTCCTCCAG+AGG - chr5_3:21401910-21401929 Msa0805000:intron 45.0%
! ACAAACCTCTGGAGGAATGT+TGG + chr5_3:21401918-21401937 None:intergenic 45.0%
ATGAAGAGACAAACCTCTGG+AGG + chr5_3:21401926-21401945 None:intergenic 45.0%
CCATTGAGAAGCTCAAGTCA+CGG - chr5_3:21402325-21402344 Msa0805000:intron 45.0%
TTCATGATGTCTCAGCTCAG+TGG + chr5_3:21402559-21402578 None:intergenic 45.0%
AATGGGAAAGGGTGAGGAAA+AGG + chr5_3:21402910-21402929 None:intergenic 45.0%
GGTAAAAATGGGAAAGGGTG+AGG + chr5_3:21402916-21402935 None:intergenic 45.0%
ATGATCAATCCACCCAAACC+TGG - chr5_3:21402957-21402976 Msa0805000:CDS 45.0%
GAAATATCTCCAGGTTTGGG+TGG + chr5_3:21402969-21402988 None:intergenic 45.0%
CTTCAAACCAAATGTGCGTC+TGG + chr5_3:21403357-21403376 None:intergenic 45.0%
AGAGCAAGGATCATGACTGA+TGG - chr5_3:21403530-21403549 Msa0805000:intron 45.0%
GGCACCTGAACAAAACTCAA+TGG + chr5_3:21403692-21403711 None:intergenic 45.0%
!!! GCAGTCTCTAAAGCTTTTGG+TGG + chr5_3:21403742-21403761 None:intergenic 45.0%
TTAGAGACTGCTAAACAGGC+TGG - chr5_3:21403751-21403770 Msa0805000:intron 45.0%
AGGAACAGTGGATATACCAG+TGG + chr5_3:21403818-21403837 None:intergenic 45.0%
ACTGGTATATCCACTGTTCC+TGG - chr5_3:21403817-21403836 Msa0805000:CDS 45.0%
ATATCCACTGTTCCTGGTTC+AGG - chr5_3:21403823-21403842 Msa0805000:CDS 45.0%
AAATCCTGAACCAGGAACAG+TGG + chr5_3:21403830-21403849 None:intergenic 45.0%
ACTGTTCCTGGTTCAGGATT+TGG - chr5_3:21403829-21403848 Msa0805000:CDS 45.0%
TTCTGTCCAAATCCTGAACC+AGG + chr5_3:21403838-21403857 None:intergenic 45.0%
CAAACAGACCCTTAGAATGG+TGG + chr5_3:21403947-21403966 None:intergenic 45.0%
! CACCATTCTAAGGGTCTGTT+TGG - chr5_3:21403945-21403964 Msa0805000:intron 45.0%
GAACTATCCTGGACAGCTTA+TGG + chr5_3:21404077-21404096 None:intergenic 45.0%
ACTAAGTGGAGTCAGCTACA+TGG + chr5_3:21405311-21405330 None:intergenic 45.0%
! ATGTAGCTGACTCCACTTAG+TGG - chr5_3:21405310-21405329 Msa0805000:five_prime_UTR 45.0%
! TGTAGCTGACTCCACTTAGT+GGG - chr5_3:21405311-21405330 Msa0805000:five_prime_UTR 45.0%
TGACTCCACTTAGTGGGATA+AGG - chr5_3:21405317-21405336 Msa0805000:five_prime_UTR 45.0%
! CAAAGCCTTATCCCACTAAG+TGG + chr5_3:21405325-21405344 None:intergenic 45.0%
GACTTGTAAAACACAGGAGG+AGG + chr5_3:21405367-21405386 None:intergenic 45.0%
!!! AAATATTTTAAATTAACTTA+GGG + chr5_3:21398468-21398487 None:intergenic 5.0%
!!! TAAATATTTTAAATTAACTT+AGG + chr5_3:21398469-21398488 None:intergenic 5.0%
AACAGTTATCAGACACCGGC+AGG + chr5_3:21397895-21397914 None:intergenic 50.0%
GGTCCGCTGCTGCAATATAA+TGG - chr5_3:21398336-21398355 Msa0805000:intron 50.0%
AAGGCTCAGTATGCTGTCAG+AGG - chr5_3:21398708-21398727 Msa0805000:CDS 50.0%
!! TTTGCCCTCCTTCTGAAGCT+CGG + chr5_3:21398754-21398773 None:intergenic 50.0%
GCTTCAGAAGGAGGGCAAAA+AGG - chr5_3:21398755-21398774 Msa0805000:CDS 50.0%
GACTTTAGCATGGCCCATCA+TGG - chr5_3:21399014-21399033 Msa0805000:CDS 50.0%
AGCATGGCCCATCATGGTAA+TGG - chr5_3:21399020-21399039 Msa0805000:CDS 50.0%
GGTTTCTGTCCCAAAGCATG+TGG + chr5_3:21399375-21399394 None:intergenic 50.0%
CATCAAGTAGGAATGGAGCC+TGG + chr5_3:21399605-21399624 None:intergenic 50.0%
GGGAATAGCAGTCCAACGTT+AGG + chr5_3:21399630-21399649 None:intergenic 50.0%
CTCTTGCAATTGCATCAGCG+GGG + chr5_3:21399650-21399669 None:intergenic 50.0%
GCTCTTGCAATTGCATCAGC+GGG + chr5_3:21399651-21399670 None:intergenic 50.0%
AGTGGTTCATAAGGGCCCTA+AGG - chr5_3:21400407-21400426 Msa0805000:intron 50.0%
TCATAAGGGCCCTAAGGCTT+TGG - chr5_3:21400413-21400432 Msa0805000:intron 50.0%
!! GGTTGACGTTTTGGTCATGG+AGG - chr5_3:21400508-21400527 Msa0805000:intron 50.0%
! AGAGGCGTGATGGTTATCCA+AGG - chr5_3:21400940-21400959 Msa0805000:CDS 50.0%
! TCTTACTGATGGTGCGAGCA+AGG - chr5_3:21401108-21401127 Msa0805000:intron 50.0%
AATCAGAGGCGAAGGAGATG+GGG - chr5_3:21401156-21401175 Msa0805000:CDS 50.0%
GTGGGACTGGAACCATAATC+TGG + chr5_3:21401263-21401282 None:intergenic 50.0%
! TAGAGTGGGTATTGTGGGAC+TGG + chr5_3:21401276-21401295 None:intergenic 50.0%
! GCAGAGTAGAGTGGGTATTG+TGG + chr5_3:21401282-21401301 None:intergenic 50.0%
GCTGTCTCTTCGAGGTAGTA+TGG + chr5_3:21401336-21401355 None:intergenic 50.0%
!! CCCAATTTGCTGTCTCTTCG+AGG + chr5_3:21401344-21401363 None:intergenic 50.0%
CCGTGACTTGAGCTTCTCAA+TGG + chr5_3:21402328-21402347 None:intergenic 50.0%
AGGGTGAGGAAAAGGAGAGA+GGG + chr5_3:21402902-21402921 None:intergenic 50.0%
AAGGGTGAGGAAAAGGAGAG+AGG + chr5_3:21402903-21402922 None:intergenic 50.0%
TCAGACACCAGACGCACATT+TGG - chr5_3:21403347-21403366 Msa0805000:intron 50.0%
!! CTGATGGATTCAACAGCTGC+AGG - chr5_3:21403546-21403565 Msa0805000:intron 50.0%
GACTGCTAAACAGGCTGGAA+AGG - chr5_3:21403756-21403775 Msa0805000:intron 50.0%
!! CTCAAGCTTTTGGAAGCCAC+TGG - chr5_3:21403799-21403818 Msa0805000:CDS 50.0%
!! CTGAAGTGTCGGCTGTGCAT+AGG - chr5_3:21397937-21397956 Msa0805000:intron 55.0%
! TGGGGGAGCACATATTCGTG+TGG - chr5_3:21397968-21397987 Msa0805000:intron 55.0%
! TCTGAAGCTCGGTAGCTCGA+AGG + chr5_3:21398743-21398762 None:intergenic 55.0%
TCGAGCTACCGAGCTTCAGA+AGG - chr5_3:21398743-21398762 Msa0805000:CDS 55.0%
AGCTACCGAGCTTCAGAAGG+AGG - chr5_3:21398746-21398765 Msa0805000:CDS 55.0%
GCTACCGAGCTTCAGAAGGA+GGG - chr5_3:21398747-21398766 Msa0805000:CDS 55.0%
AGTTGTGCTGAACCTGGCGA+GGG + chr5_3:21399407-21399426 None:intergenic 55.0%
TAGTTGTGCTGAACCTGGCG+AGG + chr5_3:21399408-21399427 None:intergenic 55.0%
CACAAGGCAACAACCTGTCC+AGG + chr5_3:21399582-21399601 None:intergenic 55.0%
ACAGGTTGTTGCCTTGTGCC+AGG - chr5_3:21399584-21399603 Msa0805000:CDS 55.0%
TAGGAATGGAGCCTGGCACA+AGG + chr5_3:21399598-21399617 None:intergenic 55.0%
TCCAGCAGTGAGGAAGGAAG+TGG - chr5_3:21400905-21400924 Msa0805000:CDS 55.0%
!! CACTAAGGCACTGGCCAGTA+GGG + chr5_3:21401573-21401592 None:intergenic 55.0%
!! TCACTAAGGCACTGGCCAGT+AGG + chr5_3:21401574-21401593 None:intergenic 55.0%
GGTGAATGTGGACAACGTGG+TGG - chr5_3:21401878-21401897 Msa0805000:intron 55.0%
GCTCAAGTCACGGCATGAAG+TGG - chr5_3:21402335-21402354 Msa0805000:intron 55.0%
GCAGGCATTTCTTCCTCAGC+TGG + chr5_3:21404938-21404957 None:intergenic 55.0%
CACGTGTGTCAGTGTCCTGC+CGG - chr5_3:21397877-21397896 Msa0805000:intron 60.0%
AGGCACTCCAGCAGTGAGGA+AGG - chr5_3:21400899-21400918 Msa0805000:CDS 60.0%
GCCACTTCCTTCCTCACTGC+TGG + chr5_3:21400909-21400928 None:intergenic 60.0%
CACTGGCCAGTAGGGTTTCC+AGG + chr5_3:21401565-21401584 None:intergenic 60.0%
ACCACTGACCTTCCCTCGCC+AGG - chr5_3:21399392-21399411 Msa0805000:intron 65.0%
ACCTGGCGAGGGAAGGTCAG+TGG + chr5_3:21399396-21399415 None:intergenic 65.0%
GTGCTGAACCTGGCGAGGGA+AGG + chr5_3:21399403-21399422 None:intergenic 65.0%
! CTCGAGGCACTCCAGCAGTG+AGG - chr5_3:21400895-21400914 Msa0805000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 21397042 21405525 21397042 ID=Msa0805000;Name=Msa0805000
chr5_3 mRNA 21397042 21405525 21397042 ID=Msa0805000-mRNA-1;Parent=Msa0805000;Name=Msa0805000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=480|1|1|1|0.92|0.85|14|489|481
chr5_3 exon 21397042 21397660 21397042 ID=Msa0805000-mRNA-1:exon:8580;Parent=Msa0805000-mRNA-1
chr5_3 exon 21398704 21398860 21398704 ID=Msa0805000-mRNA-1:exon:8579;Parent=Msa0805000-mRNA-1
chr5_3 exon 21398974 21399065 21398974 ID=Msa0805000-mRNA-1:exon:8578;Parent=Msa0805000-mRNA-1
chr5_3 exon 21399555 21399619 21399555 ID=Msa0805000-mRNA-1:exon:8577;Parent=Msa0805000-mRNA-1
chr5_3 exon 21399725 21399790 21399725 ID=Msa0805000-mRNA-1:exon:8576;Parent=Msa0805000-mRNA-1
chr5_3 exon 21400636 21400767 21400636 ID=Msa0805000-mRNA-1:exon:8575;Parent=Msa0805000-mRNA-1
chr5_3 exon 21400856 21401029 21400856 ID=Msa0805000-mRNA-1:exon:8574;Parent=Msa0805000-mRNA-1
chr5_3 exon 21401145 21401303 21401145 ID=Msa0805000-mRNA-1:exon:8573;Parent=Msa0805000-mRNA-1
chr5_3 exon 21401390 21401477 21401390 ID=Msa0805000-mRNA-1:exon:8572;Parent=Msa0805000-mRNA-1
chr5_3 exon 21401606 21401687 21401606 ID=Msa0805000-mRNA-1:exon:8571;Parent=Msa0805000-mRNA-1
chr5_3 exon 21402862 21402979 21402862 ID=Msa0805000-mRNA-1:exon:8570;Parent=Msa0805000-mRNA-1
chr5_3 exon 21403154 21403219 21403154 ID=Msa0805000-mRNA-1:exon:8569;Parent=Msa0805000-mRNA-1
chr5_3 exon 21403791 21403937 21403791 ID=Msa0805000-mRNA-1:exon:8568;Parent=Msa0805000-mRNA-1
chr5_3 exon 21405076 21405525 21405076 ID=Msa0805000-mRNA-1:exon:8567;Parent=Msa0805000-mRNA-1
chr5_3 five_prime_UTR 21405076 21405525 21405076 ID=Msa0805000-mRNA-1:five_prime_utr;Parent=Msa0805000-mRNA-1
chr5_3 five_prime_UTR 21403908 21403937 21403908 ID=Msa0805000-mRNA-1:five_prime_utr;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21403791 21403907 21403791 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21403154 21403219 21403154 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21402862 21402979 21402862 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21401606 21401687 21401606 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21401390 21401477 21401390 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21401145 21401303 21401145 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21400856 21401029 21400856 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21400636 21400767 21400636 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21399725 21399790 21399725 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21399555 21399619 21399555 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21398974 21399065 21398974 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21398704 21398860 21398704 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 CDS 21397531 21397660 21397531 ID=Msa0805000-mRNA-1:cds;Parent=Msa0805000-mRNA-1
chr5_3 three_prime_UTR 21397042 21397530 21397042 ID=Msa0805000-mRNA-1:three_prime_utr;Parent=Msa0805000-mRNA-1
Gene Sequence

>Msa0805000

ATGCCACCAAAGCCCTTAGACTATGAGTCGATTAATGAAAACGTGAAGAAGGCTCAGTATGCTGTCAGAGGTGAATTGTACCTTCGAGCTACCGAGCTTCAGAAGGAGGGCAAAAAGATTATATTCACTAATGTTGGAAACCCACATGCTTTGGGACAGAAACCACTGACCTTCCCTCGCCAGGTTGTTGCCTTGTGCCAGGCTCCATTCCTACTTGATGATCCTAACGTTGGACTGCTATTCCCCGCTGATGCAATTGCAAGAGCTAAGCAGTATCTCTCATTCACATCGGGTGGTTTAGGTGCATATAGTGATTCTCGAGGCACTCCAGCAGTGAGGAAGGAAGTGGCAGAGTTTATACAGAGGCGTGATGGTTATCCAAGTGATCCAGAGTTCATCTATCTTACTGATGGTGCGAGCAAGGCTGTGATGCAGATATTAAATACTATAATCAGAGGCGAAGGAGATGGGATTATGGTTCCAGTCCCACAATACCCACTCTACTCTGCAACAATTGCTCTTCTTGGTGGTACTCTTGTTCCATACTACCTCGAAGAGACAGCAAATTGGGGTCTTGATACTAATGAACTTCGAAAATCAGTTAGAGAGGCTCGCTATAAAGGATTAAATGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGCCAGTGCCTTAGTGAAGAGAATTTAAGAGAGGTTTTGCAATTTTGTTATGAAGAAAATTTAGTCTTGCTTGGAGATGAGGTTTACCAGACAAATATATATCAGGATGAGCGACCCTTCATTAGTGCCAAAAAGGTTTTGATGGATATGGGGCCACCTTTAAGCAATGAAGTCCAGCTTGTTTCTTTTCACTCAGTGTCGAAAGGGTATTTTGGTGAATGTGGACAACGTGGTGGATATTTTGAAATGACCAACATTCCTCCAGAGACAGTTGACGAGATCTATAAAGTTGCATCAATATCACTTAGTCCAAATGTTCCAGCACAAATATTTATGGGACTAATGATCAATCCACCCAAACCTGGAGATATTTCTTATGACCAATTTGTTAGGGAGAGCAAAGGAATACTTGAATCGCTAAGAAGAAGAGCAAGGATCATGACTGATGGATTCAACAGCTGCAGGAATGTTGTTTGTAATTTCACAGAAGGTGCCATGTATTCATTCCCTCAAATAAAACTGCCACCAAAAGCTTTAGAGACTGCTAAACAGGCTGGAAAGGCTGCAGATGTTTACTACTGTCTCAAGCTTTTGGAAGCCACTGGTATATCCACTGTTCCTGGTTCAGGATTTGGACAGAAAGAAGGGGTGTTCCATTTGAGGACAACTATATTACCAGCTGAGGAAGAAATGCCTGCTATTATGGATAGTTTCAAAAAGTTCAATGATGATTTCATGGAACAATATGATGACCACAGAGGTTATTCAAGGTTGTAA
Protein sequence

>Msa0805000

MPPKPLDYESINENVKKAQYAVRGELYLRATELQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKQYLSFTSGGLGAYSDSRGTPAVRKEVAEFIQRRDGYPSDPEFIYLTDGASKAVMQILNTIIRGEGDGIMVPVPQYPLYSATIALLGGTLVPYYLEETANWGLDTNELRKSVREARYKGLNVKAMVIINPGNPTGQCLSEENLREVLQFCYEENLVLLGDEVYQTNIYQDERPFISAKKVLMDMGPPLSNEVQLVSFHSVSKGYFGECGQRGGYFEMTNIPPETVDEIYKVASISLSPNVPAQIFMGLMINPPKPGDISYDQFVRESKGILESLRRRARIMTDGFNSCRNVVCNFTEGAMYSFPQIKLPPKALETAKQAGKAADVYYCLKLLEATGISTVPGSGFGQKEGVFHLRTTILPAEEEMPAIMDSFKKFNDDFMEQYDDHRGYSRL*