AlfalfaGEDB | Msa0053360

M. sativa cultivar zhongmu-4 / Msa0053360

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001101 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009910 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010035 GO:0010114 GO:0010151 GO:0010167 GO:0010187 GO:0010380 GO:0010467 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032870 GO:0032991 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043610 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051173 GO:0051193 GO:0051194 GO:0051239 GO:0051241 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0080050 GO:0080090 GO:0090056 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1900140 GO:1901360 GO:1901362 GO:1901363 GO:1901401 GO:1901403 GO:1901463 GO:1901465 GO:1901576 GO:1901698 GO:1901700 GO:1901701 GO:1902326 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053360	sp\|Q5HZ36\|GAT21_ARATH	40.458	131	51	6	105	217	142	263	6.19e-17	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053360	B7FH17	96.053	304	10	2	1	302	1	304	0.0	595

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TFs/TRs:

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Gene ID	Type	Classification
Msa0053360	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0053360	0.811467	6.900021e-51	-8.615850e-47
Msa0000610	Msa0053360	0.812541	4.025814e-51	-8.615850e-47
Msa0001510	Msa0053360	0.896060	5.299822e-76	-8.615850e-47
Msa0002110	Msa0053360	0.853395	2.459025e-61	-8.615850e-47
Msa0002690	Msa0053360	0.879268	1.430939e-69	-8.615850e-47
Msa0002700	Msa0053360	0.878292	3.161163e-69	-8.615850e-47
Msa0003340	Msa0053360	0.823770	1.158102e-53	-8.615850e-47
Msa0004180	Msa0053360	0.876897	9.686165e-69	-8.615850e-47
Msa0005500	Msa0053360	0.823372	1.435138e-53	-8.615850e-47
Msa0005690	Msa0053360	0.806481	8.057712e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053360	MtrunA17_Chr1g0151461	95.738	305	10	2	1	302	1	305	0.0	594
Msa0053360	MtrunA17_Chr4g0071301	44.037	109	40	4	105	213	134	221	1.05e-16	79.3
Msa0053360	MtrunA17_Chr2g0299081	37.850	214	80	8	105	300	115	293	1.17e-16	78.6
Msa0053360	MtrunA17_Chr4g0068031	62.500	48	18	0	181	228	27	74	5.66e-16	73.6
Msa0053360	MtrunA17_Chr7g0271861	69.444	36	11	0	184	219	22	57	6.87e-13	64.7
Msa0053360	MtrunA17_Chr5g0404131	50.000	66	27	1	161	220	163	228	1.80e-12	66.6
Msa0053360	MtrunA17_Chr8g0373231	63.158	38	14	0	183	220	124	161	7.85e-11	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0053360	AT5G56860.1	40.458	131	51	6	105	217	142	263	6.30e-18	84.0
Msa0053360	AT5G49300.1	66.667	45	15	0	180	224	32	76	5.98e-17	76.6
Msa0053360	AT4G26150.1	43.363	113	33	4	105	215	147	230	2.32e-16	79.0
Msa0053360	AT5G26930.1	66.667	42	14	0	180	221	22	63	9.92e-16	72.8
Msa0053360	AT3G06740.1	66.667	42	14	0	181	222	38	79	1.74e-14	70.1
Msa0053360	AT4G16141.1	68.293	41	13	0	181	221	34	74	3.37e-14	70.5
Msa0053360	AT3G16870.1	57.143	56	20	1	181	236	39	90	4.82e-14	69.7
Msa0053360	AT4G36620.1	58.333	48	20	0	180	227	71	118	2.62e-12	65.5
Msa0053360	AT2G18380.1	64.286	42	14	1	184	224	92	133	5.01e-12	64.3
Msa0053360	AT5G25830.1	55.556	45	20	0	175	219	210	254	3.33e-11	63.5

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Find 71 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGGCGGCACGACTTCTGG+TGG	0.640817	1_2:+7764514	Msa0053360:CDS
AAGCTGGCATTTCATCATGA+TGG	0.517666	1_2:+7763222	Msa0053360:CDS
AATGGATGTCTTCAAAGATG+AGG	0.632702	1_2:+7763388	Msa0053360:CDS
ACAACTTCAACTACTTCTGC+TGG	0.524955	1_2:+7764425	Msa0053360:CDS
ACAAGCCCTAGTAGTAACAG+CGG	0.724459	1_2:+7763582	Msa0053360:CDS
ACAATCAGAACAAACCCTAA+CGG	0.645452	1_2:-7763613	None:intergenic
ACAATTCAAGACTAAGAACA+AGG	0.668290	1_2:+7764385	Msa0053360:CDS
ACAGCGGTAACAACACCGTT+AGG	0.456940	1_2:+7763598	Msa0053360:CDS
ACCATTGGCAGCTTCAGCCA+TGG	0.551217	1_2:-7764315	None:intergenic
ACTCCTCCAAAGTGGGGTAT+GGG	0.495268	1_2:-7763643	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGGAGAAATATTGAAGAAT+TGG	-	chr1_2:7762457-7762476	None:intergenic	30.0%
CAATATTTCTCCTGTTAATC+AGG	+	chr1_2:7762463-7762482	Msa0053360:CDS	30.0%
AGAAAATCATGATCATCATC+AGG	+	chr1_2:7762523-7762542	Msa0053360:CDS	30.0%
TCAAAACAACACAATTATGG+TGG	-	chr1_2:7762799-7762818	None:intergenic	30.0%
CACAAATTTATCATCATCCT+TGG	+	chr1_2:7763323-7763342	Msa0053360:CDS	30.0%
TAATTACTAGGTCTCATCAT+TGG	-	chr1_2:7763522-7763541	None:intergenic	30.0%
ATGATGAGACCTAGTAATTA+TGG	+	chr1_2:7763522-7763541	Msa0053360:CDS	30.0%
AGAGTTTAACGAATTACCTT+TGG	-	chr1_2:7763681-7763700	None:intergenic	30.0%
TATGGACGAATAGTGAATAA+GGG	-	chr1_2:7763707-7763726	None:intergenic	30.0%
ATATGGACGAATAGTGAATA+AGG	-	chr1_2:7763708-7763727	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	7762398	7764562	7762398	ID=Msa0053360;Name=Msa0053360
chr1_2	mRNA	7762398	7764562	7762398	ID=Msa0053360-mRNA-1;Parent=Msa0053360;Name=Msa0053360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0.5\|0\|1\|1\|1\|3\|0\|302
chr1_2	exon	7762398	7762544	7762398	ID=Msa0053360-mRNA-1:exon:2674;Parent=Msa0053360-mRNA-1
chr1_2	exon	7763216	7763683	7763216	ID=Msa0053360-mRNA-1:exon:2675;Parent=Msa0053360-mRNA-1
chr1_2	exon	7764269	7764562	7764269	ID=Msa0053360-mRNA-1:exon:2676;Parent=Msa0053360-mRNA-1
chr1_2	CDS	7762398	7762544	7762398	ID=Msa0053360-mRNA-1:cds;Parent=Msa0053360-mRNA-1
chr1_2	CDS	7763216	7763683	7763216	ID=Msa0053360-mRNA-1:cds;Parent=Msa0053360-mRNA-1
chr1_2	CDS	7764269	7764562	7764269	ID=Msa0053360-mRNA-1:cds;Parent=Msa0053360-mRNA-1

Gene Sequence

>Msa0053360

ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCTACCTTCTTTAACTTACTTGGAGACTTTGGAGAAAATCATGATCATCATCAGGATCATAAGCTGGCATTTCATCATGATGGATCATCATCAAGCAATCATCAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATTAGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATGATCAACACAACTGCTAATGTTACCACAACTCCAATAATGAGACCAAACAACAGTATTGCAGCCACTACTGACAAAGCTATTAAGACAACAACTCCAATGATGAGACCTAGTAATTATGGTACTAGTCCAAGAAATCAAAATATAAGGTACAGCCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTATTGA

Protein sequence

>Msa0053360

MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENHDHHQDHKLAFHHDGSSSSNHQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKISHGSEKWMSSKMRLMNKMINTTANVTTTPIMRPNNSIAATTDKAIKTTTPMMRPSNYGTSPRNQNIRYSQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY*