AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053360 MtrunA17_Chr1g0151461 95.738 305 10 2 1 302 1 305 0.0 594
Msa0053360 MtrunA17_Chr4g0071301 44.037 109 40 4 105 213 134 221 1.05e-16 79.3
Msa0053360 MtrunA17_Chr2g0299081 37.850 214 80 8 105 300 115 293 1.17e-16 78.6
Msa0053360 MtrunA17_Chr4g0068031 62.500 48 18 0 181 228 27 74 5.66e-16 73.6
Msa0053360 MtrunA17_Chr7g0271861 69.444 36 11 0 184 219 22 57 6.87e-13 64.7
Msa0053360 MtrunA17_Chr5g0404131 50.000 66 27 1 161 220 163 228 1.80e-12 66.6
Msa0053360 MtrunA17_Chr8g0373231 63.158 38 14 0 183 220 124 161 7.85e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053360 AT5G56860.1 40.458 131 51 6 105 217 142 263 6.30e-18 84.0
Msa0053360 AT5G49300.1 66.667 45 15 0 180 224 32 76 5.98e-17 76.6
Msa0053360 AT4G26150.1 43.363 113 33 4 105 215 147 230 2.32e-16 79.0
Msa0053360 AT5G26930.1 66.667 42 14 0 180 221 22 63 9.92e-16 72.8
Msa0053360 AT3G06740.1 66.667 42 14 0 181 222 38 79 1.74e-14 70.1
Msa0053360 AT4G16141.1 68.293 41 13 0 181 221 34 74 3.37e-14 70.5
Msa0053360 AT3G16870.1 57.143 56 20 1 181 236 39 90 4.82e-14 69.7
Msa0053360 AT4G36620.1 58.333 48 20 0 180 227 71 118 2.62e-12 65.5
Msa0053360 AT2G18380.1 64.286 42 14 1 184 224 92 133 5.01e-12 64.3
Msa0053360 AT5G25830.1 55.556 45 20 0 175 219 210 254 3.33e-11 63.5
Msa0053360 AT3G50870.1 58.696 46 18 1 183 227 151 196 4.71e-11 62.8
Msa0053360 AT1G08010.2 56.000 50 21 1 170 219 207 255 8.23e-11 62.4
Msa0053360 AT1G08010.1 56.000 50 21 1 170 219 207 255 8.23e-11 62.4
Msa0053360 AT1G08010.3 56.000 50 21 1 170 219 207 255 8.23e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTGTTTGGTCTCATTAT+TGG 0.200196 1_2:-7763456 None:intergenic
CAGGAGAAATATTGAAGAAT+TGG 0.252897 1_2:-7762454 None:intergenic
CCTACCTTCTTTAACTTACT+TGG 0.262128 1_2:+7762491 Msa0053360:CDS
CAATATTTCTCCTGTTAATC+AGG 0.271245 1_2:+7762463 Msa0053360:CDS
TGACCTTGTAGTAAGGAATT+AGG 0.293931 1_2:-7762428 None:intergenic
TGTTACTACTAGGGCTTGTT+TGG 0.323214 1_2:-7763578 None:intergenic
ATGATGAGACCTAGTAATTA+TGG 0.329839 1_2:+7763522 Msa0053360:CDS
TTGTTACCGCTGTTACTACT+AGG 0.336848 1_2:-7763588 None:intergenic
GTCCAAGAAATCAAAATATA+AGG 0.340331 1_2:+7763550 Msa0053360:CDS
TTTGCAATGCTTGTGGAATC+AGG 0.357272 1_2:+7764273 Msa0053360:CDS
TTTAACTTACTTGGAGACTT+TGG 0.370727 1_2:+7762500 Msa0053360:CDS
TCATCATAATCATAATCTAA+TGG 0.373491 1_2:-7764485 None:intergenic
CACTCCTCCAAAGTGGGGTA+TGG 0.383367 1_2:-7763644 None:intergenic
GTAGGAGTGTCCTGATTAAC+AGG 0.392974 1_2:-7762473 None:intergenic
CACAAATTTATCATCATCCT+TGG 0.395360 1_2:+7763323 Msa0053360:CDS
AGCAACGGCGGCACGACTTC+TGG 0.401059 1_2:+7764511 Msa0053360:CDS
CCTGGTGGATTCAGAGAAAC+AGG 0.414838 1_2:-7762404 None:intergenic
GTGGCTGCAATACTGTTGTT+TGG 0.418398 1_2:-7763468 None:intergenic
GGCTGAAGCTGCCAATGGTT+TGG 0.422143 1_2:+7764319 Msa0053360:CDS
TTCATCAAGTGAGTCAGTTA+TGG 0.431248 1_2:+7763278 Msa0053360:CDS
CTTTGGAGGAGTGGCCCTAT+GGG 0.439971 1_2:+7763654 Msa0053360:CDS
ACTTTGGAGGAGTGGCCCTA+TGG 0.441269 1_2:+7763653 Msa0053360:CDS
CTTAATAGCTTTGTCAGTAG+TGG 0.442099 1_2:-7763487 None:intergenic
CGAATTACCTTTGGACCCAT+AGG 0.444966 1_2:-7763669 None:intergenic
CTTCTGGTGGATATATCTTC+TGG 0.451597 1_2:+7764527 Msa0053360:CDS
TTAGTCACGGGTCTGAGAAA+TGG 0.454396 1_2:+7763370 Msa0053360:CDS
ACAGCGGTAACAACACCGTT+AGG 0.456940 1_2:+7763598 Msa0053360:CDS
TTTATCATCATCCTTGGAGC+TGG 0.479939 1_2:+7763329 Msa0053360:CDS
AGAAAATCATGATCATCATC+AGG 0.482702 1_2:+7762523 Msa0053360:CDS
ACTCCTCCAAAGTGGGGTAT+GGG 0.495268 1_2:-7763643 None:intergenic
TTCTTAGTCTTGAATTGTGT+AGG 0.495944 1_2:-7764380 None:intergenic
TAATTACTAGGTCTCATCAT+TGG 0.503467 1_2:-7763519 None:intergenic
TGGTCTCATTATTGGAGTTG+TGG 0.511010 1_2:-7763448 None:intergenic
GCTGCTATCTTCCAGCTCCA+AGG 0.513483 1_2:-7763340 None:intergenic
AAGCTGGCATTTCATCATGA+TGG 0.517666 1_2:+7763222 Msa0053360:CDS
TCAGGCAGAGAAAGGCAAGA+AGG 0.520139 1_2:+7764291 Msa0053360:CDS
ACAACTTCAACTACTTCTGC+TGG 0.524955 1_2:+7764425 Msa0053360:CDS
CAGGCAGAGAAAGGCAAGAA+GGG 0.526577 1_2:+7764292 Msa0053360:CDS
GAATTACCTTTGGACCCATA+GGG 0.528192 1_2:-7763668 None:intergenic
GTCTCCAAGTAAGTTAAAGA+AGG 0.532121 1_2:-7762495 None:intergenic
ATTACTTTAGGATCATAAGC+TGG 0.534318 1_2:+7763206 Msa0053360:intron
AGGGGATGTAGCCAAACCAT+TGG 0.539225 1_2:-7764330 None:intergenic
CCTGTTTCTCTGAATCCACC+AGG 0.540643 1_2:+7762404 Msa0053360:CDS
CAGTCACTTTGCAATGCTTG+TGG 0.543553 1_2:+7764266 Msa0053360:intron
CAGCGGTAACAACACCGTTA+GGG 0.546032 1_2:+7763599 Msa0053360:CDS
ACCATTGGCAGCTTCAGCCA+TGG 0.551217 1_2:-7764315 None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG 0.551715 1_2:+7764283 Msa0053360:CDS
GTACATCCCATACCCCACTT+TGG 0.556830 1_2:+7763637 Msa0053360:CDS
TGTTACCGCTGTTACTACTA+GGG 0.563428 1_2:-7763587 None:intergenic
TAGGGCCACTCCTCCAAAGT+GGG 0.565226 1_2:-7763650 None:intergenic
GGACTAGTACCATAATTACT+AGG 0.573336 1_2:-7763531 None:intergenic
ATTCAGAGAAACAGGAGTCA+TGG 0.574562 1_2:-7762396 None:intergenic
AGAAGTAGTTGAAGTTGTAG+AGG 0.579757 1_2:-7764420 None:intergenic
CCAAGTAAGTTAAAGAAGGT+AGG 0.580600 1_2:-7762491 None:intergenic
GAGAAAGGCAAGAAGGGCCA+TGG 0.585866 1_2:+7764298 Msa0053360:CDS
GAGTGGCCCTATGGGTCCAA+AGG 0.590272 1_2:+7763662 Msa0053360:CDS
CATCCCATACCCCACTTTGG+AGG 0.595750 1_2:+7763640 Msa0053360:CDS
GGTCCTAATTCCTTACTACA+AGG 0.608365 1_2:+7762425 Msa0053360:CDS
TGATTATGATGAAGCAGCAA+CGG 0.614524 1_2:+7764496 Msa0053360:CDS
CATACCCCACTTTGGAGGAG+TGG 0.615240 1_2:+7763645 Msa0053360:CDS
GCCATGGCTGAAGCTGCCAA+TGG 0.619219 1_2:+7764314 Msa0053360:CDS
AATGGATGTCTTCAAAGATG+AGG 0.632702 1_2:+7763388 Msa0053360:CDS
AACGGCGGCACGACTTCTGG+TGG 0.640817 1_2:+7764514 Msa0053360:CDS
ACAATCAGAACAAACCCTAA+CGG 0.645452 1_2:-7763613 None:intergenic
AGTAAGGAATTAGGACCTGG+TGG 0.650702 1_2:-7762419 None:intergenic
ATAGGGCCACTCCTCCAAAG+TGG 0.665162 1_2:-7763651 None:intergenic
ACAATTCAAGACTAAGAACA+AGG 0.668290 1_2:+7764385 Msa0053360:CDS
TGTAGTAAGGAATTAGGACC+TGG 0.677396 1_2:-7762422 None:intergenic
AGGGCCACTCCTCCAAAGTG+GGG 0.692599 1_2:-7763649 None:intergenic
TTATGATGAAGCAGCAACGG+CGG 0.694941 1_2:+7764499 Msa0053360:CDS
ACAAGCCCTAGTAGTAACAG+CGG 0.724459 1_2:+7763582 Msa0053360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATAAAAAAAACAAAAA+GGG - chr1_2:7762748-7762767 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + chr1_2:7762919-7762938 Msa0053360:intron 10.0%
!! TGATAAAATATTTGTATTAA+AGG - chr1_2:7763924-7763943 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - chr1_2:7764021-7764040 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG - chr1_2:7764194-7764213 None:intergenic 10.0%
!! ATCTATAAAAAAAACAAAAA+GGG - chr1_2:7762748-7762767 None:intergenic 10.0%
!! CTTTATATAATGATATAATT+TGG + chr1_2:7762919-7762938 Msa0053360:intron 10.0%
!! TGATAAAATATTTGTATTAA+AGG - chr1_2:7763924-7763943 None:intergenic 10.0%
!! TAATTAAAAAGATAAAATAG+AGG - chr1_2:7764021-7764040 None:intergenic 10.0%
!! AATCAAATTAAGTTTAATTA+TGG - chr1_2:7764194-7764213 None:intergenic 10.0%
!! CATCTATAAAAAAAACAAAA+AGG - chr1_2:7762749-7762768 None:intergenic 15.0%
!! AAAAAATTATAGAAGAGAAA+AGG - chr1_2:7762995-7763014 None:intergenic 15.0%
!!! GATATTAATAATTTTTGTGA+TGG - chr1_2:7763796-7763815 None:intergenic 15.0%
!!! TATCAATATATTTTTTTGAG+AGG - chr1_2:7763821-7763840 None:intergenic 15.0%
!! ATTGATATTTATTGTTCATA+AGG + chr1_2:7763834-7763853 Msa0053360:intron 15.0%
!! TTGATATTTATTGTTCATAA+GGG + chr1_2:7763835-7763854 Msa0053360:intron 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - chr1_2:7763890-7763909 None:intergenic 15.0%
!! CATCTATAAAAAAAACAAAA+AGG - chr1_2:7762749-7762768 None:intergenic 15.0%
!! AAAAAATTATAGAAGAGAAA+AGG - chr1_2:7762995-7763014 None:intergenic 15.0%
!!! GATATTAATAATTTTTGTGA+TGG - chr1_2:7763796-7763815 None:intergenic 15.0%
!!! TATCAATATATTTTTTTGAG+AGG - chr1_2:7763821-7763840 None:intergenic 15.0%
!! ATTGATATTTATTGTTCATA+AGG + chr1_2:7763834-7763853 Msa0053360:intron 15.0%
!! TTGATATTTATTGTTCATAA+GGG + chr1_2:7763835-7763854 Msa0053360:intron 15.0%
!!! TGTTTTTGTAAGAATTTTTA+TGG - chr1_2:7763890-7763909 None:intergenic 15.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - chr1_2:7762565-7762584 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - chr1_2:7762566-7762585 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG - chr1_2:7762945-7762964 None:intergenic 20.0%
!!! TACCTTATATTTTGATTTCT+TGG - chr1_2:7763555-7763574 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - chr1_2:7763915-7763934 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - chr1_2:7764488-7764507 None:intergenic 20.0%
!! AAAGAGAAGTAAAAAACAAA+GGG - chr1_2:7762565-7762584 None:intergenic 20.0%
!! AAAAGAGAAGTAAAAAACAA+AGG - chr1_2:7762566-7762585 None:intergenic 20.0%
!! TAGATTAATAATCAGATCAT+AGG - chr1_2:7762945-7762964 None:intergenic 20.0%
!!! TACCTTATATTTTGATTTCT+TGG - chr1_2:7763555-7763574 None:intergenic 20.0%
!! ATTTGTATTAAAGGAAGTAA+AGG - chr1_2:7763915-7763934 None:intergenic 20.0%
!! TCATCATAATCATAATCTAA+TGG - chr1_2:7764488-7764507 None:intergenic 20.0%
! GTTTCAAAACAACACAATTA+TGG - chr1_2:7762802-7762821 None:intergenic 25.0%
! CAATATAACATACACATCAA+AGG - chr1_2:7763095-7763114 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + chr1_2:7763194-7763213 Msa0053360:intron 25.0%
! GTCCAAGAAATCAAAATATA+AGG + chr1_2:7763550-7763569 Msa0053360:CDS 25.0%
!! CGATAAACGTTAAATTTTAG+TGG - chr1_2:7763762-7763781 None:intergenic 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - chr1_2:7764017-7764036 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + chr1_2:7764241-7764260 Msa0053360:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - chr1_2:7764352-7764371 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - chr1_2:7764353-7764372 None:intergenic 25.0%
! GTTTCAAAACAACACAATTA+TGG - chr1_2:7762802-7762821 None:intergenic 25.0%
! CAATATAACATACACATCAA+AGG - chr1_2:7763095-7763114 None:intergenic 25.0%
!!! CTCTTTGATTTGATTACTTT+AGG + chr1_2:7763194-7763213 Msa0053360:intron 25.0%
! GTCCAAGAAATCAAAATATA+AGG + chr1_2:7763550-7763569 Msa0053360:CDS 25.0%
!! CGATAAACGTTAAATTTTAG+TGG - chr1_2:7763762-7763781 None:intergenic 25.0%
! TAAAAAGATAAAATAGAGGC+AGG - chr1_2:7764017-7764036 None:intergenic 25.0%
! TAGTTAACATGAAAACATGT+TGG + chr1_2:7764241-7764260 Msa0053360:intron 25.0%
!!! TCTTAAGCACTTTAGTTTTA+GGG - chr1_2:7764352-7764371 None:intergenic 25.0%
!!! ATCTTAAGCACTTTAGTTTT+AGG - chr1_2:7764353-7764372 None:intergenic 25.0%
CAGGAGAAATATTGAAGAAT+TGG - chr1_2:7762457-7762476 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG + chr1_2:7762463-7762482 Msa0053360:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG + chr1_2:7762500-7762519 Msa0053360:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + chr1_2:7762523-7762542 Msa0053360:CDS 30.0%
TCAAAACAACACAATTATGG+TGG - chr1_2:7762799-7762818 None:intergenic 30.0%
!!! TTTTGAAACAAGACAACGTT+TGG + chr1_2:7762813-7762832 Msa0053360:intron 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + chr1_2:7763206-7763225 Msa0053360:intron 30.0%
CACAAATTTATCATCATCCT+TGG + chr1_2:7763323-7763342 Msa0053360:CDS 30.0%
TAATTACTAGGTCTCATCAT+TGG - chr1_2:7763522-7763541 None:intergenic 30.0%
ATGATGAGACCTAGTAATTA+TGG + chr1_2:7763522-7763541 Msa0053360:CDS 30.0%
AGAGTTTAACGAATTACCTT+TGG - chr1_2:7763681-7763700 None:intergenic 30.0%
TATGGACGAATAGTGAATAA+GGG - chr1_2:7763707-7763726 None:intergenic 30.0%
ATATGGACGAATAGTGAATA+AGG - chr1_2:7763708-7763727 None:intergenic 30.0%
ACTATTCGTCCATATTAAAG+TGG + chr1_2:7763713-7763732 Msa0053360:intron 30.0%
CTATTCGTCCATATTAAAGT+GGG + chr1_2:7763714-7763733 Msa0053360:intron 30.0%
! TTTAGTGGATCATAACAACA+AGG - chr1_2:7763747-7763766 None:intergenic 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - chr1_2:7764351-7764370 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - chr1_2:7764383-7764402 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + chr1_2:7764385-7764404 Msa0053360:CDS 30.0%
CAGGAGAAATATTGAAGAAT+TGG - chr1_2:7762457-7762476 None:intergenic 30.0%
CAATATTTCTCCTGTTAATC+AGG + chr1_2:7762463-7762482 Msa0053360:CDS 30.0%
! TTTAACTTACTTGGAGACTT+TGG + chr1_2:7762500-7762519 Msa0053360:CDS 30.0%
AGAAAATCATGATCATCATC+AGG + chr1_2:7762523-7762542 Msa0053360:CDS 30.0%
TCAAAACAACACAATTATGG+TGG - chr1_2:7762799-7762818 None:intergenic 30.0%
!!! TTTTGAAACAAGACAACGTT+TGG + chr1_2:7762813-7762832 Msa0053360:intron 30.0%
!! ATTACTTTAGGATCATAAGC+TGG + chr1_2:7763206-7763225 Msa0053360:intron 30.0%
CACAAATTTATCATCATCCT+TGG + chr1_2:7763323-7763342 Msa0053360:CDS 30.0%
TAATTACTAGGTCTCATCAT+TGG - chr1_2:7763522-7763541 None:intergenic 30.0%
ATGATGAGACCTAGTAATTA+TGG + chr1_2:7763522-7763541 Msa0053360:CDS 30.0%
AGAGTTTAACGAATTACCTT+TGG - chr1_2:7763681-7763700 None:intergenic 30.0%
TATGGACGAATAGTGAATAA+GGG - chr1_2:7763707-7763726 None:intergenic 30.0%
ATATGGACGAATAGTGAATA+AGG - chr1_2:7763708-7763727 None:intergenic 30.0%
ACTATTCGTCCATATTAAAG+TGG + chr1_2:7763713-7763732 Msa0053360:intron 30.0%
CTATTCGTCCATATTAAAGT+GGG + chr1_2:7763714-7763733 Msa0053360:intron 30.0%
! TTTAGTGGATCATAACAACA+AGG - chr1_2:7763747-7763766 None:intergenic 30.0%
!!! CTTAAGCACTTTAGTTTTAG+GGG - chr1_2:7764351-7764370 None:intergenic 30.0%
!! TTCTTAGTCTTGAATTGTGT+AGG - chr1_2:7764383-7764402 None:intergenic 30.0%
ACAATTCAAGACTAAGAACA+AGG + chr1_2:7764385-7764404 Msa0053360:CDS 30.0%
TGACCTTGTAGTAAGGAATT+AGG - chr1_2:7762431-7762450 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - chr1_2:7762438-7762457 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG - chr1_2:7762494-7762513 None:intergenic 35.0%
! CCTACCTTCTTTAACTTACT+TGG + chr1_2:7762491-7762510 Msa0053360:CDS 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - chr1_2:7762498-7762517 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + chr1_2:7763278-7763297 Msa0053360:CDS 35.0%
! AGCAGCAAAAAGATTAGTCA+CGG + chr1_2:7763357-7763376 Msa0053360:CDS 35.0%
AATGGATGTCTTCAAAGATG+AGG + chr1_2:7763388-7763407 Msa0053360:CDS 35.0%
! CTGTTGTTTGGTCTCATTAT+TGG - chr1_2:7763459-7763478 None:intergenic 35.0%
!! CTTAATAGCTTTGTCAGTAG+TGG - chr1_2:7763490-7763509 None:intergenic 35.0%
! GGACTAGTACCATAATTACT+AGG - chr1_2:7763534-7763553 None:intergenic 35.0%
ACAATCAGAACAAACCCTAA+CGG - chr1_2:7763616-7763635 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - chr1_2:7764423-7764442 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + chr1_2:7764496-7764515 Msa0053360:CDS 35.0%
TGACCTTGTAGTAAGGAATT+AGG - chr1_2:7762431-7762450 None:intergenic 35.0%
!!! TTGGTTTTGACCTTGTAGTA+AGG - chr1_2:7762438-7762457 None:intergenic 35.0%
CCAAGTAAGTTAAAGAAGGT+AGG - chr1_2:7762494-7762513 None:intergenic 35.0%
! CCTACCTTCTTTAACTTACT+TGG + chr1_2:7762491-7762510 Msa0053360:CDS 35.0%
GTCTCCAAGTAAGTTAAAGA+AGG - chr1_2:7762498-7762517 None:intergenic 35.0%
TTCATCAAGTGAGTCAGTTA+TGG + chr1_2:7763278-7763297 Msa0053360:CDS 35.0%
! AGCAGCAAAAAGATTAGTCA+CGG + chr1_2:7763357-7763376 Msa0053360:CDS 35.0%
AATGGATGTCTTCAAAGATG+AGG + chr1_2:7763388-7763407 Msa0053360:CDS 35.0%
! CTGTTGTTTGGTCTCATTAT+TGG - chr1_2:7763459-7763478 None:intergenic 35.0%
!! CTTAATAGCTTTGTCAGTAG+TGG - chr1_2:7763490-7763509 None:intergenic 35.0%
! GGACTAGTACCATAATTACT+AGG - chr1_2:7763534-7763553 None:intergenic 35.0%
ACAATCAGAACAAACCCTAA+CGG - chr1_2:7763616-7763635 None:intergenic 35.0%
AGAAGTAGTTGAAGTTGTAG+AGG - chr1_2:7764423-7764442 None:intergenic 35.0%
TGATTATGATGAAGCAGCAA+CGG + chr1_2:7764496-7764515 Msa0053360:CDS 35.0%
TGTAGTAAGGAATTAGGACC+TGG - chr1_2:7762425-7762444 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + chr1_2:7762425-7762444 Msa0053360:CDS 40.0%
TGAAACAAGACAACGTTTGG+TGG + chr1_2:7762816-7762835 Msa0053360:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG + chr1_2:7763222-7763241 Msa0053360:CDS 40.0%
TTTATCATCATCCTTGGAGC+TGG + chr1_2:7763329-7763348 Msa0053360:CDS 40.0%
! GCAGCAAAAAGATTAGTCAC+GGG + chr1_2:7763358-7763377 Msa0053360:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG - chr1_2:7763451-7763470 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - chr1_2:7763581-7763600 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - chr1_2:7763590-7763609 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - chr1_2:7763591-7763610 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - chr1_2:7763671-7763690 None:intergenic 40.0%
GTCACTCTCCCACTTTAATA+TGG - chr1_2:7763725-7763744 None:intergenic 40.0%
TTTGCAATGCTTGTGGAATC+AGG + chr1_2:7764273-7764292 Msa0053360:CDS 40.0%
ACAACTTCAACTACTTCTGC+TGG + chr1_2:7764425-7764444 Msa0053360:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + chr1_2:7764527-7764546 Msa0053360:CDS 40.0%
TGTAGTAAGGAATTAGGACC+TGG - chr1_2:7762425-7762444 None:intergenic 40.0%
GGTCCTAATTCCTTACTACA+AGG + chr1_2:7762425-7762444 Msa0053360:CDS 40.0%
TGAAACAAGACAACGTTTGG+TGG + chr1_2:7762816-7762835 Msa0053360:intron 40.0%
AAGCTGGCATTTCATCATGA+TGG + chr1_2:7763222-7763241 Msa0053360:CDS 40.0%
TTTATCATCATCCTTGGAGC+TGG + chr1_2:7763329-7763348 Msa0053360:CDS 40.0%
! GCAGCAAAAAGATTAGTCAC+GGG + chr1_2:7763358-7763377 Msa0053360:CDS 40.0%
TGGTCTCATTATTGGAGTTG+TGG - chr1_2:7763451-7763470 None:intergenic 40.0%
! TGTTACTACTAGGGCTTGTT+TGG - chr1_2:7763581-7763600 None:intergenic 40.0%
TGTTACCGCTGTTACTACTA+GGG - chr1_2:7763590-7763609 None:intergenic 40.0%
TTGTTACCGCTGTTACTACT+AGG - chr1_2:7763591-7763610 None:intergenic 40.0%
GAATTACCTTTGGACCCATA+GGG - chr1_2:7763671-7763690 None:intergenic 40.0%
GTCACTCTCCCACTTTAATA+TGG - chr1_2:7763725-7763744 None:intergenic 40.0%
TTTGCAATGCTTGTGGAATC+AGG + chr1_2:7764273-7764292 Msa0053360:CDS 40.0%
ACAACTTCAACTACTTCTGC+TGG + chr1_2:7764425-7764444 Msa0053360:CDS 40.0%
! CTTCTGGTGGATATATCTTC+TGG + chr1_2:7764527-7764546 Msa0053360:CDS 40.0%
AGTAAGGAATTAGGACCTGG+TGG - chr1_2:7762422-7762441 None:intergenic 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG - chr1_2:7762476-7762495 None:intergenic 45.0%
TTAGTCACGGGTCTGAGAAA+TGG + chr1_2:7763370-7763389 Msa0053360:CDS 45.0%
GTGGCTGCAATACTGTTGTT+TGG - chr1_2:7763471-7763490 None:intergenic 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + chr1_2:7763582-7763601 Msa0053360:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG - chr1_2:7763672-7763691 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + chr1_2:7764266-7764285 Msa0053360:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + chr1_2:7764283-7764302 Msa0053360:CDS 45.0%
TTATGATGAAGCAGCAACGG+CGG + chr1_2:7764499-7764518 Msa0053360:CDS 45.0%
AGTAAGGAATTAGGACCTGG+TGG - chr1_2:7762422-7762441 None:intergenic 45.0%
!! GTAGGAGTGTCCTGATTAAC+AGG - chr1_2:7762476-7762495 None:intergenic 45.0%
TTAGTCACGGGTCTGAGAAA+TGG + chr1_2:7763370-7763389 Msa0053360:CDS 45.0%
GTGGCTGCAATACTGTTGTT+TGG - chr1_2:7763471-7763490 None:intergenic 45.0%
ACAAGCCCTAGTAGTAACAG+CGG + chr1_2:7763582-7763601 Msa0053360:CDS 45.0%
CGAATTACCTTTGGACCCAT+AGG - chr1_2:7763672-7763691 None:intergenic 45.0%
! CAGTCACTTTGCAATGCTTG+TGG + chr1_2:7764266-7764285 Msa0053360:intron 45.0%
TTGTGGAATCAGGCAGAGAA+AGG + chr1_2:7764283-7764302 Msa0053360:CDS 45.0%
TTATGATGAAGCAGCAACGG+CGG + chr1_2:7764499-7764518 Msa0053360:CDS 45.0%
!! TCTATATATAATAAAAAAAA+TGG - chr1_2:7762869-7762888 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG + chr1_2:7764107-7764126 Msa0053360:intron 5.0%
!! TCTATATATAATAAAAAAAA+TGG - chr1_2:7762869-7762888 None:intergenic 5.0%
!!! TAATTTTTATTATTATATCA+CGG + chr1_2:7764107-7764126 Msa0053360:intron 5.0%
!! CCTGGTGGATTCAGAGAAAC+AGG - chr1_2:7762407-7762426 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG + chr1_2:7762404-7762423 Msa0053360:CDS 50.0%
ACAGCGGTAACAACACCGTT+AGG + chr1_2:7763598-7763617 Msa0053360:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG + chr1_2:7763599-7763618 Msa0053360:CDS 50.0%
GTACATCCCATACCCCACTT+TGG + chr1_2:7763637-7763656 Msa0053360:CDS 50.0%
ACTCCTCCAAAGTGGGGTAT+GGG - chr1_2:7763646-7763665 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + chr1_2:7764291-7764310 Msa0053360:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + chr1_2:7764292-7764311 Msa0053360:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - chr1_2:7764333-7764352 None:intergenic 50.0%
!! CCTGGTGGATTCAGAGAAAC+AGG - chr1_2:7762407-7762426 None:intergenic 50.0%
! CCTGTTTCTCTGAATCCACC+AGG + chr1_2:7762404-7762423 Msa0053360:CDS 50.0%
ACAGCGGTAACAACACCGTT+AGG + chr1_2:7763598-7763617 Msa0053360:CDS 50.0%
CAGCGGTAACAACACCGTTA+GGG + chr1_2:7763599-7763618 Msa0053360:CDS 50.0%
GTACATCCCATACCCCACTT+TGG + chr1_2:7763637-7763656 Msa0053360:CDS 50.0%
ACTCCTCCAAAGTGGGGTAT+GGG - chr1_2:7763646-7763665 None:intergenic 50.0%
TCAGGCAGAGAAAGGCAAGA+AGG + chr1_2:7764291-7764310 Msa0053360:CDS 50.0%
CAGGCAGAGAAAGGCAAGAA+GGG + chr1_2:7764292-7764311 Msa0053360:CDS 50.0%
AGGGGATGTAGCCAAACCAT+TGG - chr1_2:7764333-7764352 None:intergenic 50.0%
GCTGCTATCTTCCAGCTCCA+AGG - chr1_2:7763343-7763362 None:intergenic 55.0%
CATCCCATACCCCACTTTGG+AGG + chr1_2:7763640-7763659 Msa0053360:CDS 55.0%
CACTCCTCCAAAGTGGGGTA+TGG - chr1_2:7763647-7763666 None:intergenic 55.0%
! CATACCCCACTTTGGAGGAG+TGG + chr1_2:7763645-7763664 Msa0053360:CDS 55.0%
TAGGGCCACTCCTCCAAAGT+GGG - chr1_2:7763653-7763672 None:intergenic 55.0%
ATAGGGCCACTCCTCCAAAG+TGG - chr1_2:7763654-7763673 None:intergenic 55.0%
! ACTTTGGAGGAGTGGCCCTA+TGG + chr1_2:7763653-7763672 Msa0053360:CDS 55.0%
! CTTTGGAGGAGTGGCCCTAT+GGG + chr1_2:7763654-7763673 Msa0053360:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + chr1_2:7764298-7764317 Msa0053360:CDS 55.0%
ACCATTGGCAGCTTCAGCCA+TGG - chr1_2:7764318-7764337 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + chr1_2:7764319-7764338 Msa0053360:CDS 55.0%
GCTGCTATCTTCCAGCTCCA+AGG - chr1_2:7763343-7763362 None:intergenic 55.0%
CATCCCATACCCCACTTTGG+AGG + chr1_2:7763640-7763659 Msa0053360:CDS 55.0%
CACTCCTCCAAAGTGGGGTA+TGG - chr1_2:7763647-7763666 None:intergenic 55.0%
! CATACCCCACTTTGGAGGAG+TGG + chr1_2:7763645-7763664 Msa0053360:CDS 55.0%
TAGGGCCACTCCTCCAAAGT+GGG - chr1_2:7763653-7763672 None:intergenic 55.0%
ATAGGGCCACTCCTCCAAAG+TGG - chr1_2:7763654-7763673 None:intergenic 55.0%
! ACTTTGGAGGAGTGGCCCTA+TGG + chr1_2:7763653-7763672 Msa0053360:CDS 55.0%
! CTTTGGAGGAGTGGCCCTAT+GGG + chr1_2:7763654-7763673 Msa0053360:CDS 55.0%
GAGAAAGGCAAGAAGGGCCA+TGG + chr1_2:7764298-7764317 Msa0053360:CDS 55.0%
ACCATTGGCAGCTTCAGCCA+TGG - chr1_2:7764318-7764337 None:intergenic 55.0%
GGCTGAAGCTGCCAATGGTT+TGG + chr1_2:7764319-7764338 Msa0053360:CDS 55.0%
AGGGCCACTCCTCCAAAGTG+GGG - chr1_2:7763652-7763671 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + chr1_2:7763662-7763681 Msa0053360:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + chr1_2:7764314-7764333 Msa0053360:CDS 60.0%
AGGGCCACTCCTCCAAAGTG+GGG - chr1_2:7763652-7763671 None:intergenic 60.0%
GAGTGGCCCTATGGGTCCAA+AGG + chr1_2:7763662-7763681 Msa0053360:CDS 60.0%
GCCATGGCTGAAGCTGCCAA+TGG + chr1_2:7764314-7764333 Msa0053360:CDS 60.0%
AGCAACGGCGGCACGACTTC+TGG + chr1_2:7764511-7764530 Msa0053360:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG + chr1_2:7764514-7764533 Msa0053360:CDS 65.0%
AGCAACGGCGGCACGACTTC+TGG + chr1_2:7764511-7764530 Msa0053360:CDS 65.0%
AACGGCGGCACGACTTCTGG+TGG + chr1_2:7764514-7764533 Msa0053360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7762398 7764562 7762398 ID=Msa0053360;Name=Msa0053360
chr1_2 mRNA 7762398 7764562 7762398 ID=Msa0053360-mRNA-1;Parent=Msa0053360;Name=Msa0053360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.5|0|1|1|1|3|0|302
chr1_2 exon 7762398 7762544 7762398 ID=Msa0053360-mRNA-1:exon:2674;Parent=Msa0053360-mRNA-1
chr1_2 exon 7763216 7763683 7763216 ID=Msa0053360-mRNA-1:exon:2675;Parent=Msa0053360-mRNA-1
chr1_2 exon 7764269 7764562 7764269 ID=Msa0053360-mRNA-1:exon:2676;Parent=Msa0053360-mRNA-1
chr1_2 CDS 7762398 7762544 7762398 ID=Msa0053360-mRNA-1:cds;Parent=Msa0053360-mRNA-1
chr1_2 CDS 7763216 7763683 7763216 ID=Msa0053360-mRNA-1:cds;Parent=Msa0053360-mRNA-1
chr1_2 CDS 7764269 7764562 7764269 ID=Msa0053360-mRNA-1:cds;Parent=Msa0053360-mRNA-1
Gene Sequence

>Msa0053360

ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCTACCTTCTTTAACTTACTTGGAGACTTTGGAGAAAATCATGATCATCATCAGGATCATAAGCTGGCATTTCATCATGATGGATCATCATCAAGCAATCATCAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATTAGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATGATCAACACAACTGCTAATGTTACCACAACTCCAATAATGAGACCAAACAACAGTATTGCAGCCACTACTGACAAAGCTATTAAGACAACAACTCCAATGATGAGACCTAGTAATTATGGTACTAGTCCAAGAAATCAAAATATAAGGTACAGCCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCAAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTATTGA

Protein sequence

>Msa0053360

MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENHDHHQDHKLAFHHDGSSSSNHQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKISHGSEKWMSSKMRLMNKMINTTANVTTTPIMRPNNSIAATTDKAIKTTTPMMRPSNYGTSPRNQNIRYSQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY*