AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0449220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449220 MtrunA17_Chr3g0092501 98.305 531 9 0 1 531 1 531 0.0 1104
Msa0449220 MtrunA17_Chr8g0361791 71.992 532 143 4 4 530 3 533 0.0 830
Msa0449220 MtrunA17_Chr5g0416991 73.166 518 135 3 17 530 15 532 0.0 825
Msa0449220 MtrunA17_Chr4g0055031 63.771 541 180 6 1 530 1 536 0.0 731
Msa0449220 MtrunA17_Chr8g0388881 53.631 537 216 7 19 530 25 553 0.0 587
Msa0449220 MtrunA17_Chr7g0246701 51.111 540 232 6 19 530 23 558 0.0 568
Msa0449220 MtrunA17_Chr6g0472571 54.812 478 206 3 62 530 83 559 0.0 556
Msa0449220 MtrunA17_Chr1g0203741 50.642 545 240 8 10 528 7 548 0.0 553
Msa0449220 MtrunA17_Chr8g0350391 49.908 541 238 8 20 530 26 563 0.0 548
Msa0449220 MtrunA17_Chr7g0214551 51.293 464 213 3 78 528 36 499 1.91e-172 501
Msa0449220 MtrunA17_Chr5g0409411 43.939 528 265 13 10 526 13 520 1.79e-144 430
Msa0449220 MtrunA17_Chr8g0369481 43.378 521 267 9 16 526 16 518 8.77e-143 426
Msa0449220 MtrunA17_Chr7g0246681 44.348 460 230 7 83 532 73 516 3.37e-131 396
Msa0449220 MtrunA17_Chr8g0350351 44.150 453 227 8 88 530 91 527 4.83e-128 388
Msa0449220 MtrunA17_Chr1g0167381 40.926 540 272 14 21 526 14 540 1.78e-124 380
Msa0449220 MtrunA17_Chr1g0187601 44.211 475 224 12 77 526 81 539 3.65e-122 374
Msa0449220 MtrunA17_Chr3g0112341 42.713 494 247 16 55 529 124 600 1.79e-119 368
Msa0449220 MtrunA17_Chr1g0183721 41.922 489 247 14 59 526 38 510 8.16e-118 362
Msa0449220 MtrunA17_Chr1g0159741 42.380 479 250 13 66 529 122 589 7.65e-117 361
Msa0449220 MtrunA17_Chr5g0435751 39.752 483 246 12 61 529 101 552 8.80e-116 357
Msa0449220 MtrunA17_Chr5g0437501 40.598 468 237 12 93 535 100 551 1.32e-110 343
Msa0449220 MtrunA17_Chr3g0130381 43.421 456 221 15 94 526 268 709 8.99e-110 346
Msa0449220 MtrunA17_Chr8g0372471 41.036 502 245 17 65 536 353 833 1.46e-108 346
Msa0449220 MtrunA17_Chr8g0384431 42.048 459 229 13 94 529 298 742 5.25e-108 342
Msa0449220 MtrunA17_Chr3g0113981 39.834 482 255 15 62 528 146 607 6.10e-107 336
Msa0449220 MtrunA17_Chr1g0171781 39.869 459 246 8 88 530 89 533 1.04e-106 333
Msa0449220 MtrunA17_Chr3g0125511 41.344 491 248 17 65 529 202 678 1.51e-102 327
Msa0449220 MtrunA17_Chr1g0155141 34.649 456 250 16 94 530 209 635 8.41e-73 246
Msa0449220 MtrunA17_Chr3g0115931 30.000 550 323 17 14 527 94 617 1.57e-70 240
Msa0449220 MtrunA17_Chr5g0404771 48.117 239 110 4 94 328 329 557 3.29e-70 236
Msa0449220 MtrunA17_Chr5g0426281 31.884 483 264 16 83 527 144 599 1.83e-69 237
Msa0449220 MtrunA17_Chr4g0043121 30.124 322 205 6 83 392 84 397 6.65e-47 170
Msa0449220 MtrunA17_Chr5g0404761 36.449 214 114 9 334 529 1 210 2.13e-29 117
Msa0449220 MtrunA17_Chr4g0043131 55.844 77 31 2 454 528 40 115 1.23e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0449220 AT1G26850.2 69.742 542 151 5 1 530 1 541 0.0 806
Msa0449220 AT1G26850.1 69.742 542 151 5 1 530 1 541 0.0 806
Msa0449220 AT1G26850.3 68.452 504 146 5 1 492 1 503 0.0 731
Msa0449220 AT4G18030.1 63.519 540 185 5 1 531 1 537 0.0 727
Msa0449220 AT4G10440.1 52.602 538 219 6 19 530 22 549 0.0 589
Msa0449220 AT1G33170.1 55.809 482 198 3 61 530 89 567 0.0 578
Msa0449220 AT2G45750.1 50.844 533 236 7 19 529 19 547 0.0 555
Msa0449220 AT4G00750.1 50.187 534 241 5 19 530 25 555 0.0 547
Msa0449220 AT2G43200.2 50.552 453 214 4 85 528 91 542 1.62e-161 474
Msa0449220 AT2G43200.1 50.552 453 214 4 85 528 91 542 1.62e-161 474
Msa0449220 AT4G19120.1 43.511 524 252 12 21 526 23 520 1.35e-147 439
Msa0449220 AT4G19120.2 43.511 524 252 12 21 526 23 520 1.35e-147 439
Msa0449220 AT1G31850.1 42.610 521 269 11 21 527 23 527 4.12e-147 437
Msa0449220 AT1G31850.2 42.610 521 269 11 21 527 23 527 4.12e-147 437
Msa0449220 AT1G31850.4 42.610 521 269 11 21 527 23 527 4.12e-147 437
Msa0449220 AT1G31850.3 42.610 521 269 11 21 527 23 527 4.12e-147 437
Msa0449220 AT4G00740.1 42.164 536 276 10 7 530 7 520 4.14e-135 407
Msa0449220 AT4G00740.2 42.164 536 276 10 7 530 7 520 4.14e-135 407
Msa0449220 AT4G19120.3 41.948 503 248 12 21 505 23 499 1.17e-132 397
Msa0449220 AT1G04430.1 42.770 491 246 11 61 530 60 536 6.27e-122 374
Msa0449220 AT1G04430.3 42.770 491 246 11 61 530 60 536 6.27e-122 374
Msa0449220 AT1G04430.2 42.770 491 246 11 61 530 60 536 6.27e-122 374
Msa0449220 AT2G39750.1 42.457 464 242 11 81 530 173 625 3.06e-120 371
Msa0449220 AT4G14360.1 43.255 467 228 12 78 521 67 519 1.30e-119 367
Msa0449220 AT4G14360.2 43.255 467 228 12 78 521 67 519 1.30e-119 367
Msa0449220 AT1G77260.1 43.497 469 234 15 77 529 135 588 8.68e-119 366
Msa0449220 AT5G06050.1 41.201 483 252 13 64 529 129 596 1.63e-118 366
Msa0449220 AT3G23300.2 42.950 461 226 12 83 521 77 522 2.34e-116 358
Msa0449220 AT3G23300.1 42.950 461 226 12 83 521 77 522 2.34e-116 358
Msa0449220 AT3G56080.2 43.080 448 224 14 94 526 114 545 1.09e-114 352
Msa0449220 AT3G56080.1 43.080 448 224 14 94 526 114 545 5.14e-114 352
Msa0449220 AT1G29470.1 42.609 460 224 15 94 529 250 693 8.24e-109 343
Msa0449220 AT1G29470.2 42.609 460 224 15 94 529 250 693 8.24e-109 343
Msa0449220 AT2G40280.1 40.940 447 232 11 93 525 89 517 1.74e-107 335
Msa0449220 AT3G10200.1 39.440 464 244 11 88 533 75 519 2.40e-107 335
Msa0449220 AT2G34300.2 41.739 460 228 14 94 529 250 693 2.95e-107 340
Msa0449220 AT2G34300.3 41.739 460 228 14 94 529 250 693 2.95e-107 340
Msa0449220 AT2G34300.1 41.739 460 228 14 94 529 250 693 2.95e-107 340
Msa0449220 AT3G10200.2 39.440 464 244 11 88 533 75 519 4.49e-107 334
Msa0449220 AT5G04060.1 40.000 460 239 11 88 529 86 526 5.83e-107 334
Msa0449220 AT5G14430.1 40.389 463 235 11 88 526 83 528 2.62e-104 327
Msa0449220 AT5G64030.1 41.394 459 234 14 94 530 308 753 4.54e-104 333
Msa0449220 AT5G14430.2 39.957 463 237 11 88 526 83 528 1.59e-102 323
Msa0449220 AT3G51070.1 41.826 471 229 18 93 536 380 832 1.68e-102 330
Msa0449220 AT3G51070.2 42.516 461 220 18 93 526 380 822 4.27e-102 328
Msa0449220 AT1G13860.4 31.789 475 277 11 80 526 76 531 5.51e-74 248
Msa0449220 AT1G13860.3 31.789 475 277 11 80 526 76 531 5.51e-74 248
Msa0449220 AT1G13860.1 31.789 475 277 11 80 526 76 531 5.51e-74 248
Msa0449220 AT1G13860.5 31.789 475 277 11 80 526 76 531 5.51e-74 248
Msa0449220 AT1G19430.1 34.802 454 253 15 94 530 231 658 2.71e-73 248
Msa0449220 AT1G19430.3 34.802 454 253 15 94 530 231 658 2.71e-73 248
Msa0449220 AT1G78240.1 30.055 549 322 18 14 527 86 607 1.74e-68 234
Msa0449220 AT1G78240.2 30.055 549 322 18 14 527 86 607 1.74e-68 234
Msa0449220 AT2G03480.2 31.078 473 266 11 82 526 83 523 8.50e-67 228
Msa0449220 AT2G03480.1 31.670 461 290 10 82 526 83 534 2.25e-66 227
Msa0449220 AT1G13860.2 33.947 380 218 9 172 526 4 375 6.12e-64 217
Msa0449220 AT1G19430.2 30.633 395 232 14 94 471 231 600 2.28e-45 169
Msa0449220 AT2G03480.3 30.420 286 185 3 82 358 83 363 1.04e-42 159

Find 173 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTCATAACCCATAATT+TGG 0.133173 3_3:+31649099 None:intergenic
CCCTGGATTCTCCCAAATTA+TGG 0.203218 3_3:-31649111 Msa0449220:CDS
GGTGGTTACTGGATACTTTC+TGG 0.206385 3_3:-31650273 Msa0449220:CDS
TGTGGTTTCTTCTATATCTT+AGG 0.232416 3_3:-31652040 Msa0449220:CDS
CCTGCAATCATTGGTGTTCT+TGG 0.240795 3_3:-31650632 Msa0449220:CDS
AAGATTCATCATCATTATTA+TGG 0.243682 3_3:-31652134 Msa0449220:exon
CAATGCAATTTCTCTTCTTC+AGG 0.249924 3_3:+31651755 None:intergenic
TTCTTAGACCTGGTGGTTAC+TGG 0.278416 3_3:-31650284 Msa0449220:CDS
CCTTCCTTCAATGATTTCAT+AGG 0.286945 3_3:-31652852 Msa0449220:five_prime_UTR
TTGAGGAGGACAACCGATTA+TGG 0.292931 3_3:-31649237 Msa0449220:CDS
TTGTGTCTCTCATTCACATA+TGG 0.297936 3_3:+31652960 None:intergenic
GTGTTATTCCATTGGATAAT+GGG 0.310194 3_3:-31651523 Msa0449220:CDS
TGTATGCCGTCAAGCGGTAC+TGG 0.313995 3_3:-31646719 Msa0449220:CDS
ATGGACATGAATGCTGGTTT+TGG 0.317218 3_3:-31649148 Msa0449220:CDS
AACAGATCCACTGGTGATTC+TGG 0.320240 3_3:+31649282 None:intergenic
CCTGGATTCTCCCAAATTAT+GGG 0.335830 3_3:-31649110 Msa0449220:CDS
TCACATGTTTCTTCCATAAT+CGG 0.339896 3_3:+31649224 None:intergenic
TTGTGGCAAAGGAGTGGTTT+TGG 0.341553 3_3:-31652016 Msa0449220:CDS
GTTCTCGCTGCTTGATTCCA+TGG 0.353569 3_3:-31650562 Msa0449220:CDS
AGCACAAGTTCAATTTGCTT+TGG 0.358150 3_3:-31650666 Msa0449220:CDS
GTCAAGCGGTACTGGGTTGC+AGG 0.358325 3_3:-31646711 Msa0449220:CDS
TGATTGGAATTTATCATGAT+TGG 0.360133 3_3:-31649024 Msa0449220:intron
TTCTCGCTGCTTGATTCCAT+GGG 0.364909 3_3:-31650561 Msa0449220:CDS
TTGAGAAGGCTGTGCAGAAT+TGG 0.369767 3_3:-31651634 Msa0449220:CDS
ATATTCGAGCGTGGATTGAT+TGG 0.372018 3_3:-31649040 Msa0449220:CDS
ATAATGCCAGGTTGCTAGTT+GGG 0.373268 3_3:-31650750 Msa0449220:intron
ACACTGCTAAACTTCTTTGC+TGG 0.373706 3_3:-31650167 Msa0449220:CDS
TTATTGTTTCTATTATCTCC+AGG 0.375991 3_3:+31652097 None:intergenic
TGCTCTCGCTTGATCATGGC+AGG 0.376794 3_3:+31651826 None:intergenic
TAGTTGTTCTTCCAGTTGAT+TGG 0.377835 3_3:+31650246 None:intergenic
ATTAGAACTGCATTAGATAC+TGG 0.385129 3_3:-31651497 Msa0449220:CDS
TCTTCTATATCTTAGGTTTG+TGG 0.386477 3_3:-31652033 Msa0449220:CDS
AGTGTTATTCCATTGGATAA+TGG 0.391930 3_3:-31651524 Msa0449220:CDS
TGGTGCATGGAAGCCATTCC+CGG 0.408977 3_3:-31649326 Msa0449220:CDS
TGGTGGAACTCAGTTTCCTC+AGG 0.413607 3_3:-31651576 Msa0449220:CDS
GGCACATAATCACGACTCTT+AGG 0.417529 3_3:+31651689 None:intergenic
ACATTCATAACCCATAATTT+GGG 0.421771 3_3:+31649100 None:intergenic
TGTGTCTCTCATTCACATAT+GGG 0.425862 3_3:+31652961 None:intergenic
GTTCAATTTGCTTTGGAAAG+AGG 0.431401 3_3:-31650659 Msa0449220:CDS
AGCGGTTATATTCCGAGATC+AGG 0.434664 3_3:-31646841 Msa0449220:CDS
TCCTCCTCAAGCTCATCTTC+AGG 0.435903 3_3:+31650207 None:intergenic
GATATTCTACGCCGTTTCCT+TGG 0.442639 3_3:-31651712 Msa0449220:CDS
ATATCTTAGGTTTGTGGCAA+AGG 0.443977 3_3:-31652027 Msa0449220:CDS
CAGCAAATTCCGATGATGTC+TGG 0.447884 3_3:-31650047 Msa0449220:intron
CTCCGAAAAGTTCGAGGAAA+CGG 0.448698 3_3:+31652985 None:intergenic
TTTGCTGATTCACATATTGT+AGG 0.450073 3_3:+31650063 None:intergenic
ACTTGCAAGTGTTATTCCAT+TGG 0.452305 3_3:-31651531 Msa0449220:CDS
TTTCTGGTCCTCCAATCAAC+TGG 0.454130 3_3:-31650257 Msa0449220:CDS
GTTGCGTTGCGTTGTGATGA+AGG 0.457418 3_3:+31652822 None:intergenic
TGGTCCACTTATTTCAGAAA+AGG 0.457651 3_3:-31646745 Msa0449220:CDS
AAACACCATTTGCATGGATA+AGG 0.463004 3_3:+31647283 None:intergenic
CACTGCTAAACTTCTTTGCT+GGG 0.463203 3_3:-31650166 Msa0449220:CDS
CATGCACCACTAGGTTTAGC+AGG 0.463854 3_3:+31649340 None:intergenic
CCAAGAACACCAATGATTGC+AGG 0.464040 3_3:+31650632 None:intergenic
TGCAACCCAGTACCGCTTGA+CGG 0.468786 3_3:+31646713 None:intergenic
TTGTTCTTCCAGTTGATTGG+AGG 0.469936 3_3:+31650249 None:intergenic
GGAGATAATAGAAACAATAA+AGG 0.473411 3_3:-31652094 Msa0449220:CDS
CGTTGCGTTGTGATGAAGGT+GGG 0.474601 3_3:+31652826 None:intergenic
TATTGTTTCTATTATCTCCA+GGG 0.478348 3_3:+31652098 None:intergenic
ACTTGATCATCGACATCATC+AGG 0.478380 3_3:+31651893 None:intergenic
GGAACAACATTGAGTCTCTC+CGG 0.478828 3_3:+31649307 None:intergenic
TTCTCACCGTTTGCACCCCA+TGG 0.485211 3_3:+31650545 None:intergenic
AGAGGTGTTCCTGCAATCAT+TGG 0.490042 3_3:-31650641 Msa0449220:CDS
ACTGCATTAGATACTGGTTG+TGG 0.496504 3_3:-31651491 Msa0449220:CDS
AACGGCGTAGAATATCCTTT+AGG 0.497535 3_3:+31651719 None:intergenic
GTCATAAGTCCTTGGATATG+TGG 0.497562 3_3:+31647305 None:intergenic
CCCATAATTTGGGAGAATCC+AGG 0.500245 3_3:+31649110 None:intergenic
GTATGCCGTCAAGCGGTACT+GGG 0.506500 3_3:-31646718 Msa0449220:CDS
TCATTGCTCTCGCTTGATCA+TGG 0.507222 3_3:+31651822 None:intergenic
GATAATGCCAGGTTGCTAGT+TGG 0.509409 3_3:-31650751 Msa0449220:intron
TATGACCTTATCCATGCAAA+TGG 0.511685 3_3:-31647288 Msa0449220:CDS
GTTAACAAAATTATTGACTC+GGG 0.511760 3_3:-31649187 Msa0449220:CDS
AGAATATGAATTATAGAGAA+AGG 0.514276 3_3:-31651787 Msa0449220:CDS
ATGAGCTTGAGGAGGAGCAA+AGG 0.515379 3_3:-31650200 Msa0449220:CDS
TGGATAAGGTCATAAGTCCT+TGG 0.516979 3_3:+31647297 None:intergenic
TGCAATGTCAATTGCACCAA+GGG 0.517748 3_3:-31650699 Msa0449220:CDS
TGTCTCATAGCCGCACCTAA+AGG 0.517939 3_3:-31651734 Msa0449220:CDS
TGTATCCACACAGTTATTTG+AGG 0.522368 3_3:-31649254 Msa0449220:CDS
ACTCACCATGATAATGATGC+TGG 0.522472 3_3:-31651920 Msa0449220:CDS
TTGTAAGGCGCATTTGCAAA+CGG 0.522787 3_3:+31651668 None:intergenic
AGAAAGGTGAAATTGCGATC+TGG 0.523535 3_3:-31650131 Msa0449220:CDS
CAGAATTGGATACAGTATGA+AGG 0.524032 3_3:-31651620 Msa0449220:CDS
CTTCAGGACGTTGCCACGCT+CGG 0.524545 3_3:+31650223 None:intergenic
TCAAAAGCTCCAGAAGGAAA+AGG 0.525704 3_3:+31650596 None:intergenic
ATCATTATTATGGCGACGAA+AGG 0.527448 3_3:-31652124 Msa0449220:exon
GTGATTGTGCATTGTAGAAG+TGG 0.528947 3_3:+31652901 None:intergenic
TGCAATTTCTCTTCTTCAGG+AGG 0.530109 3_3:+31651758 None:intergenic
CTGCATTAGATACTGGTTGT+GGG 0.535379 3_3:-31651490 Msa0449220:CDS
TGTGCTTCATGAGAGTCCCT+TGG 0.536377 3_3:+31650683 None:intergenic
TTCATTGTAGTTGCTTTGTG+TGG 0.537719 3_3:-31652058 Msa0449220:CDS
CCATAATTTGGGAGAATCCA+GGG 0.540312 3_3:+31649111 None:intergenic
GGTTAACAAAATTATTGACT+CGG 0.540607 3_3:-31649188 Msa0449220:CDS
ACATTGAGTCTCTCCGGGAA+TGG 0.540912 3_3:+31649313 None:intergenic
AACTTACGCATTCTTGTACA+AGG 0.541342 3_3:+31647257 None:intergenic
CTCAGGTGGATTGTACATGA+AGG 0.541515 3_3:-31650319 Msa0449220:intron
GCGTTCCAGCATCATTATCA+TGG 0.543226 3_3:+31651915 None:intergenic
TCATTATTATGGCGACGAAA+GGG 0.543326 3_3:-31652123 Msa0449220:exon
AATGTCTAGGTACAAGAAGA+TGG 0.544409 3_3:-31649377 Msa0449220:intron
CAAGTGAAAAGAATTGCAAA+AGG 0.546432 3_3:-31646804 Msa0449220:CDS
TAGAAGTGGAATGAAAGAAC+GGG 0.546766 3_3:+31652915 None:intergenic
TAATGCCAGGTTGCTAGTTG+GGG 0.546828 3_3:-31650749 Msa0449220:intron
TCAACCGTCAGACTCTTGTA+AGG 0.547001 3_3:+31651653 None:intergenic
TCAGCACACCAACCTGATCT+CGG 0.548579 3_3:+31646829 None:intergenic
CTGCTAAACCTAGTGGTGCA+TGG 0.551940 3_3:-31649339 Msa0449220:CDS
CAAGAGTCTGACGGTTGAGA+AGG 0.552915 3_3:-31651648 Msa0449220:CDS
GGAAACTGAGTTCCACCACC+AGG 0.554496 3_3:+31651581 None:intergenic
AGGTGAAAACACCATTTGCA+TGG 0.559659 3_3:+31647277 None:intergenic
GGGTCCTATGAAATCATTGA+AGG 0.561307 3_3:+31652848 None:intergenic
AATGGCTTCCATGCACCACT+AGG 0.565263 3_3:+31649331 None:intergenic
TGAAATCATTGAAGGAAGGA+AGG 0.566888 3_3:+31652856 None:intergenic
ATGGGTCTCCGAAAAGTTCG+AGG 0.570628 3_3:+31652979 None:intergenic
GAACAACATTGAGTCTCTCC+GGG 0.571537 3_3:+31649308 None:intergenic
TGGGAAAAGAAACACGAGAA+AGG 0.572348 3_3:-31650147 Msa0449220:CDS
CGACTCTTAGGCCAAGGAAA+CGG 0.575028 3_3:+31651701 None:intergenic
GGTGGAACTCAGTTTCCTCA+GGG 0.575524 3_3:-31651575 Msa0449220:CDS
TTGATTCCATGGGGTGCAAA+CGG 0.580051 3_3:-31650551 Msa0449220:intron
CTATAATTCATATTCTCTCG+CGG 0.583956 3_3:+31651794 None:intergenic
CCTATGAAATCATTGAAGGA+AGG 0.585015 3_3:+31652852 None:intergenic
GGGGAGGTATCGCAATGTGA+TGG 0.591837 3_3:-31649167 Msa0449220:CDS
AACCACCAGGTCTAAGAACT+CGG 0.593120 3_3:+31650289 None:intergenic
AGTCCTTGGATATGTGGAGA+AGG 0.593716 3_3:+31647311 None:intergenic
GTTATATTCCGAGATCAGGT+TGG 0.595480 3_3:-31646837 Msa0449220:CDS
TACATGAGGAACAGATCCAC+TGG 0.596376 3_3:+31649273 None:intergenic
GTAGAAGTGGAATGAAAGAA+CGG 0.597619 3_3:+31652914 None:intergenic
CACGCTCGAATATAACGCCA+AGG 0.600165 3_3:+31649050 None:intergenic
ATTGCTGAGAAAGCTACCCT+TGG 0.600623 3_3:-31649067 Msa0449220:CDS
GCGTTGCGTTGTGATGAAGG+TGG 0.602573 3_3:+31652825 None:intergenic
AGAATTGGATACAGTATGAA+GGG 0.603120 3_3:-31651619 Msa0449220:CDS
TTAGGTTTGTGGCAAAGGAG+TGG 0.605801 3_3:-31652022 Msa0449220:CDS
GTTGACCGAGTTCTTAGACC+TGG 0.606390 3_3:-31650294 Msa0449220:CDS
GTTGCGTTGTGATGAAGGTG+GGG 0.608017 3_3:+31652827 None:intergenic
ACTACAATGAAAATTGACAC+TGG 0.609222 3_3:+31652070 None:intergenic
ACATGTGAATGCTTACAAGC+GGG 0.609421 3_3:-31649209 Msa0449220:CDS
TAATCACGACTCTTAGGCCA+AGG 0.609435 3_3:+31651695 None:intergenic
TGCATTAGATACTGGTTGTG+GGG 0.616968 3_3:-31651489 Msa0449220:intron
ATCCACACAGTTATTTGAGG+AGG 0.617680 3_3:-31649251 Msa0449220:CDS
AAGCCTTCTCCACATATCCA+AGG 0.620857 3_3:-31647314 Msa0449220:CDS
AAGCAATTACCAGACATCAT+CGG 0.621464 3_3:+31650038 None:intergenic
AAAATGGTGGATCACGAGGA+TGG 0.621832 3_3:-31646765 Msa0449220:CDS
GATCCACTGGTGATTCTGGT+AGG 0.622673 3_3:+31649286 None:intergenic
AATGTGATGGACATGAATGC+TGG 0.624533 3_3:-31649154 Msa0449220:CDS
GACCGAGTTCTTAGACCTGG+TGG 0.625195 3_3:-31650291 Msa0449220:CDS
GGAAGAACAACTACCGAGCG+TGG 0.625378 3_3:-31650236 Msa0449220:CDS
ACAAAATTATTGACTCGGGG+AGG 0.625557 3_3:-31649183 Msa0449220:CDS
AACATGTGAATGCTTACAAG+CGG 0.626082 3_3:-31649210 Msa0449220:CDS
CTAATCATCCCATTATCCAA+TGG 0.627524 3_3:+31651515 None:intergenic
TCCTGAAGATGAGCTTGAGG+AGG 0.630377 3_3:-31650208 Msa0449220:CDS
GCTCTCGCTTGATCATGGCA+GGG 0.633453 3_3:+31651827 None:intergenic
GTAGCTTTCTCAGCAATCGT+AGG 0.633580 3_3:+31649073 None:intergenic
TTGCGTTGTGATGAAGGTGG+GGG 0.638627 3_3:+31652828 None:intergenic
GAATTGCAAAAGGAATGAGA+TGG 0.639259 3_3:-31646794 Msa0449220:CDS
TCGATGTAGCTATCGTCGCA+AGG 0.639674 3_3:+31651857 None:intergenic
CACAACGCAACGCAACGCAA+CGG 0.643294 3_3:-31652815 Msa0449220:five_prime_UTR
TTAACAAAATTATTGACTCG+GGG 0.644245 3_3:-31649186 Msa0449220:CDS
TGATGTCGATGATCAAGTCA+AGG 0.645651 3_3:-31651888 Msa0449220:CDS
CTTGGCGTTATATTCGAGCG+TGG 0.650173 3_3:-31649049 Msa0449220:CDS
GCATTAAACATTGATGAATG+CGG 0.650787 3_3:-31650102 Msa0449220:CDS
GAAAGTATCCAGTAACCACC+AGG 0.652413 3_3:+31650276 None:intergenic
AATAACTGTGTGGATACATG+AGG 0.659395 3_3:+31649259 None:intergenic
AGGTCTTGTATGCCGTCAAG+CGG 0.663670 3_3:-31646725 Msa0449220:CDS
GCCATGTCAAAAGCTCCAGA+AGG 0.665789 3_3:+31650590 None:intergenic
ACGTCCTGAAGATGAGCTTG+AGG 0.668730 3_3:-31650211 Msa0449220:CDS
ATGGCGACGAAAGGGAACCC+TGG 0.668816 3_3:-31652115 Msa0449220:CDS
TTGCAATGTCAATTGCACCA+AGG 0.673230 3_3:-31650700 Msa0449220:CDS
GTCCTCCTCAAATAACTGTG+TGG 0.682256 3_3:+31649249 None:intergenic
TCTCGCTGCTTGATTCCATG+GGG 0.683640 3_3:-31650560 Msa0449220:CDS
GTAACTCCTGCTAAACCTAG+TGG 0.692700 3_3:-31649346 Msa0449220:CDS
GAAACTGAGTTCCACCACCA+GGG 0.695348 3_3:+31651582 None:intergenic
TGCGCCTTACAAGAGTCTGA+CGG 0.697082 3_3:-31651657 Msa0449220:CDS
GTTCCTACCAGAATCACCAG+TGG 0.702298 3_3:-31649289 Msa0449220:CDS
CGTAGAATATCCTTTAGGTG+CGG 0.702529 3_3:+31651724 None:intergenic
ACGCTCGAATATAACGCCAA+GGG 0.703437 3_3:+31649051 None:intergenic
ATGTAAGCATCAGCACCCTG+AGG 0.736890 3_3:+31651560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTTATTTATATATAAACA+AGG + chr3_3:31648264-31648283 None:intergenic 10.0%
!!! ATATAAATAAACTATTTTGT+TGG - chr3_3:31648271-31648290 Msa0449220:intron 10.0%
!! TTGATTGAAATATAATCTAT+TGG - chr3_3:31649204-31649223 Msa0449220:CDS 15.0%
!! GATTATTAAACCATAATAAT+TGG - chr3_3:31649350-31649369 Msa0449220:CDS 15.0%
!! AATGCATATAGAATAAAAAT+CGG + chr3_3:31649962-31649981 None:intergenic 15.0%
!! ATCTAATCCATTTATAAATT+AGG - chr3_3:31650943-31650962 Msa0449220:intron 15.0%
!! TTAATTAAATAAACAGAACA+AGG + chr3_3:31652343-31652362 None:intergenic 15.0%
!! AATTCTTTAAATTTCCATCT+TGG - chr3_3:31647003-31647022 Msa0449220:intron 20.0%
!!! TGTTAGTTTAATGATTACAA+AGG - chr3_3:31647027-31647046 Msa0449220:intron 20.0%
!! ATTTGAAAACTTTGATGTTT+CGG + chr3_3:31647179-31647198 None:intergenic 20.0%
!!! AATTTCATTTTACACTATCT+AGG - chr3_3:31647277-31647296 Msa0449220:CDS 20.0%
!!! ATTTCATTTTACACTATCTA+GGG - chr3_3:31647278-31647297 Msa0449220:CDS 20.0%
!!! TATTATGTAGGGATTTTATA+AGG - chr3_3:31647524-31647543 Msa0449220:intron 20.0%
!! AAGATTCATCATCATTATTA+TGG - chr3_3:31647567-31647586 Msa0449220:intron 20.0%
!! AGAATATGAATTATAGAGAA+AGG - chr3_3:31647914-31647933 Msa0449220:intron 20.0%
!! TATATATAAACAAGGATGTT+AGG + chr3_3:31648256-31648275 None:intergenic 20.0%
!! CATGATACATTATTTAGTAA+GGG + chr3_3:31648327-31648346 None:intergenic 20.0%
!! ATACATTATTTAATTAGCCA+GGG + chr3_3:31648467-31648486 None:intergenic 20.0%
!!! AGAATACTTATGAGTTTTTT+TGG - chr3_3:31649175-31649194 Msa0449220:CDS 20.0%
!! GATTATATTTCAATCAACAT+TGG + chr3_3:31649201-31649220 None:intergenic 20.0%
!! GAAAAAAGTTCCAATTATTA+TGG + chr3_3:31649363-31649382 None:intergenic 20.0%
!! AGCAAAAGAAAAAAAGAAAA+GGG + chr3_3:31649703-31649722 None:intergenic 20.0%
!! AAGCAAAAGAAAAAAAGAAA+AGG + chr3_3:31649704-31649723 None:intergenic 20.0%
!!! TGTTTTTCTTTTCAAAAACA+GGG + chr3_3:31649861-31649880 None:intergenic 20.0%
!!! TTTTTGAAAAGAAAAACAGA+TGG - chr3_3:31649863-31649882 Msa0449220:intron 20.0%
!!! AATTTTATTAGTCATTGAGT+TGG - chr3_3:31650757-31650776 Msa0449220:intron 20.0%
!! TTGACATCCTAATTTATAAA+TGG + chr3_3:31650953-31650972 None:intergenic 20.0%
!!! AAAGAGAAGTGTAAATATTA+TGG - chr3_3:31651009-31651028 Msa0449220:intron 20.0%
!! AAAAAAAGTAACAATGAAGT+AGG - chr3_3:31651054-31651073 Msa0449220:intron 20.0%
!!! GATTTATTCAGAATTTTGAA+TGG - chr3_3:31651088-31651107 Msa0449220:intron 20.0%
!!! ATTGAAGAAATTTTTTGTTG+AGG - chr3_3:31651123-31651142 Msa0449220:intron 20.0%
!!! ATTTTTTGTTGAGGTTATAT+AGG - chr3_3:31651132-31651151 Msa0449220:intron 20.0%
!!! TTTTTTGTTGAGGTTATATA+GGG - chr3_3:31651133-31651152 Msa0449220:intron 20.0%
!!! ATATCTATTTGTTGTTGTTT+TGG + chr3_3:31651659-31651678 None:intergenic 20.0%
!!! ATTTTAACAAGGTATTAAAG+TGG + chr3_3:31651819-31651838 None:intergenic 20.0%
!!! GAATCACTTAAATTTTAACA+AGG + chr3_3:31651830-31651849 None:intergenic 20.0%
!!! TTTTTAATCTGAATTTAGCA+TGG - chr3_3:31652234-31652253 Msa0449220:intron 20.0%
!!! TAATGCAGAAGATATTTTAT+TGG - chr3_3:31652809-31652828 Msa0449220:five_prime_UTR 20.0%
! AAATAAGAAAAGTTGCTTAC+TGG + chr3_3:31646922-31646941 None:intergenic 25.0%
! AAAAACAAAATCTGTTACAG+CGG + chr3_3:31646951-31646970 None:intergenic 25.0%
!!! ATTACAAAGGTTTTAAACAG+CGG - chr3_3:31647040-31647059 Msa0449220:intron 25.0%
!! AAGTTCGTTTTGTATTATGT+AGG - chr3_3:31647512-31647531 Msa0449220:intron 25.0%
!! AGTTCGTTTTGTATTATGTA+GGG - chr3_3:31647513-31647532 Msa0449220:intron 25.0%
!!! TATTGTTTCTATTATCTCCA+GGG + chr3_3:31647606-31647625 None:intergenic 25.0%
!!! TTATTGTTTCTATTATCTCC+AGG + chr3_3:31647607-31647626 None:intergenic 25.0%
! GGAGATAATAGAAACAATAA+AGG - chr3_3:31647607-31647626 Msa0449220:intron 25.0%
!! AAATAAACTATTTTGTTGGC+AGG - chr3_3:31648275-31648294 Msa0449220:intron 25.0%
!! AATAAACTATTTTGTTGGCA+GGG - chr3_3:31648276-31648295 Msa0449220:intron 25.0%
! CCATGATACATTATTTAGTA+AGG + chr3_3:31648328-31648347 None:intergenic 25.0%
! CCTTACTAAATAATGTATCA+TGG - chr3_3:31648325-31648344 Msa0449220:intron 25.0%
! TATTTAACGACATTGTTTGT+TGG - chr3_3:31648390-31648409 Msa0449220:intron 25.0%
! GATACATTATTTAATTAGCC+AGG + chr3_3:31648468-31648487 None:intergenic 25.0%
! TATTTAACGACATTGTTTGT+TGG - chr3_3:31648390-31648409 Msa0449220:intron 25.0%
!! GTAAAAGAGAAAATTTTGCA+TGG + chr3_3:31648835-31648854 None:intergenic 25.0%
! AGTATATGAATCCAATTCTT+AGG + chr3_3:31649319-31649338 None:intergenic 25.0%
!!! ATAATTGGAACTTTTTTCTC+AGG - chr3_3:31649365-31649384 Msa0449220:CDS 25.0%
! AAAAGAAAAAAAGAAAAGGG+GGG + chr3_3:31649700-31649719 None:intergenic 25.0%
! CAAAAGAAAAAAAGAAAAGG+GGG + chr3_3:31649701-31649720 None:intergenic 25.0%
! GCAAAAGAAAAAAAGAAAAG+GGG + chr3_3:31649702-31649721 None:intergenic 25.0%
!! GAATCTGGTTTAAGAATAAT+AGG + chr3_3:31649766-31649785 None:intergenic 25.0%
!!! CTGTTTTTCTTTTCAAAAAC+AGG + chr3_3:31649862-31649881 None:intergenic 25.0%
! TTACTCATTTGCTTGTAAAA+TGG - chr3_3:31649991-31650010 Msa0449220:intron 25.0%
!! CTTAAGAAACATGTTTTCTT+AGG - chr3_3:31650035-31650054 Msa0449220:intron 25.0%
!! GTTTTCAATACTCATCTAAA+TGG - chr3_3:31650295-31650314 Msa0449220:CDS 25.0%
!! GGTTAACAAAATTATTGACT+CGG - chr3_3:31650513-31650532 Msa0449220:intron 25.0%
!!! GTTAACAAAATTATTGACTC+GGG - chr3_3:31650514-31650533 Msa0449220:intron 25.0%
!!! TTAACAAAATTATTGACTCG+GGG - chr3_3:31650515-31650534 Msa0449220:intron 25.0%
! ACATTCATAACCCATAATTT+GGG + chr3_3:31650604-31650623 None:intergenic 25.0%
! TGATTGGAATTTATCATGAT+TGG - chr3_3:31650677-31650696 Msa0449220:CDS 25.0%
! ATGACTAATAAAATTCACAG+AGG + chr3_3:31650752-31650771 None:intergenic 25.0%
!!! TTTGGTTCTTTATAGATTCA+AGG + chr3_3:31650805-31650824 None:intergenic 25.0%
! TGTCAACATTAAGATTATAC+TGG - chr3_3:31650967-31650986 Msa0449220:intron 25.0%
! AGTGTAAATATTATGGCATT+TGG - chr3_3:31651016-31651035 Msa0449220:intron 25.0%
!! ACAATGAAGTAGGAATATTT+TGG - chr3_3:31651064-31651083 Msa0449220:intron 25.0%
! CTGAATTATTGAATACAACA+AGG - chr3_3:31651176-31651195 Msa0449220:intron 25.0%
!! AGTCTAAGATACATATCATT+TGG - chr3_3:31651308-31651327 Msa0449220:intron 25.0%
! TGTTTATCAAAATATGCAAC+TGG + chr3_3:31651434-31651453 None:intergenic 25.0%
!!! TTGCATATTTTGATAAACAC+AGG - chr3_3:31651435-31651454 Msa0449220:intron 25.0%
!!! TGCATATTTTGATAAACACA+GGG - chr3_3:31651436-31651455 Msa0449220:intron 25.0%
! TAGCAATATATGGCTTATAT+TGG + chr3_3:31651522-31651541 None:intergenic 25.0%
! TGACTTATACTAGCAATATA+TGG + chr3_3:31651532-31651551 None:intergenic 25.0%
! ATAGATTTATTAGTGCAACA+AGG - chr3_3:31651561-31651580 Msa0449220:CDS 25.0%
! TAGATTTATTAGTGCAACAA+GGG - chr3_3:31651562-31651581 Msa0449220:CDS 25.0%
!! CAACTATTTTGCATTCATTA+AGG + chr3_3:31651687-31651706 None:intergenic 25.0%
!! TCTTTAAGTGTTCTAAACTT+TGG - chr3_3:31651756-31651775 Msa0449220:CDS 25.0%
!! CTTTAAGTGTTCTAAACTTT+GGG - chr3_3:31651757-31651776 Msa0449220:CDS 25.0%
! ACGGTAGATGTTTAATATAT+TGG - chr3_3:31652029-31652048 Msa0449220:CDS 25.0%
! AATGTTAAGTAAGCAATAGA+TGG - chr3_3:31652258-31652277 Msa0449220:intron 25.0%
!! TAATTATCTATTTTCTTCCC+AGG - chr3_3:31652360-31652379 Msa0449220:intron 25.0%
!!! CCAATTTGTTTTTTTGTTTC+TGG + chr3_3:31652532-31652551 None:intergenic 25.0%
! CCAGAAACAAAAAAACAAAT+TGG - chr3_3:31652529-31652548 Msa0449220:intron 25.0%
!! AGAAGATATTTTATTGGAGA+TGG - chr3_3:31652815-31652834 Msa0449220:five_prime_UTR 25.0%
! AATGAGATGGAATACAAAAA+TGG - chr3_3:31652920-31652939 Msa0449220:five_prime_UTR 25.0%
TCACAATATGTTACACGATA+TGG + chr3_3:31647328-31647347 None:intergenic 30.0%
! TTGTGAATGTTTTCACCATA+TGG - chr3_3:31647342-31647361 Msa0449220:intron 30.0%
! ATCAGAGTTTTCAAATACGA+TGG - chr3_3:31647372-31647391 Msa0449220:intron 30.0%
CACAAACAACTGCAATATTT+CGG + chr3_3:31647446-31647465 None:intergenic 30.0%
ACTACAATGAAAATTGACAC+TGG + chr3_3:31647634-31647653 None:intergenic 30.0%
TGTGGTTTCTTCTATATCTT+AGG - chr3_3:31647661-31647680 Msa0449220:intron 30.0%
TCTTCTATATCTTAGGTTTG+TGG - chr3_3:31647668-31647687 Msa0449220:intron 30.0%
CTATAATTCATATTCTCTCG+CGG + chr3_3:31647910-31647929 None:intergenic 30.0%
AGAATTGGATACAGTATGAA+GGG - chr3_3:31648082-31648101 Msa0449220:intron 30.0%
! AGTATGAAGGGAATGTTTTT+AGG - chr3_3:31648094-31648113 Msa0449220:intron 30.0%
! AGTGTTATTCCATTGGATAA+TGG - chr3_3:31648177-31648196 Msa0449220:intron 30.0%
! GTGTTATTCCATTGGATAAT+GGG - chr3_3:31648178-31648197 Msa0449220:intron 30.0%
ATTAGAACTGCATTAGATAC+TGG - chr3_3:31648204-31648223 Msa0449220:intron 30.0%
TTGAATGTAACAACGCATAT+CGG + chr3_3:31648691-31648710 None:intergenic 30.0%
TCTCAAATCATTATCTGTGT+TGG - chr3_3:31648722-31648741 Msa0449220:intron 30.0%
! TATGGAATCGTTTTATAACG+AGG + chr3_3:31649252-31649271 None:intergenic 30.0%
GCATTAAACATTGATGAATG+CGG - chr3_3:31649599-31649618 Msa0449220:intron 30.0%
!! TTTGCTGATTCACATATTGT+AGG + chr3_3:31649641-31649660 None:intergenic 30.0%
!!! CTTTTTTTCTTTTGCTTCAC+TGG - chr3_3:31649707-31649726 Msa0449220:intron 30.0%
!! AGATGAGTATTGAAAACCAA+TGG + chr3_3:31650292-31650311 None:intergenic 30.0%
TAAATGGTTAGACAATGTCT+AGG - chr3_3:31650311-31650330 Msa0449220:CDS 30.0%
TCACATGTTTCTTCCATAAT+CGG + chr3_3:31650480-31650499 None:intergenic 30.0%
GACATTCATAACCCATAATT+TGG + chr3_3:31650605-31650624 None:intergenic 30.0%
GTGAAAAAACTTTCTTGAAG+TGG + chr3_3:31650868-31650887 None:intergenic 30.0%
TTCACACATTTGTAAAACTG+TGG - chr3_3:31650883-31650902 Msa0449220:intron 30.0%
! TAATGCTTCCTTGTTTGATT+GGG + chr3_3:31651255-31651274 None:intergenic 30.0%
! ATAATGCTTCCTTGTTTGAT+TGG + chr3_3:31651256-31651275 None:intergenic 30.0%
AAACTCAGCCAAAATGAATT+CGG - chr3_3:31651337-31651356 Msa0449220:intron 30.0%
TTATCAAAATATGCAACTGG+TGG + chr3_3:31651431-31651450 None:intergenic 30.0%
!!! GTTGTTGTTTTGGTATTACA+CGG + chr3_3:31651649-31651668 None:intergenic 30.0%
! CTATTTTGCATTCATTAAGG+TGG + chr3_3:31651684-31651703 None:intergenic 30.0%
AAACACATCAAACCTAATTG+CGG - chr3_3:31651710-31651729 Msa0449220:CDS 30.0%
TTAAGTGATTCAAGTAGAGA+AGG - chr3_3:31651839-31651858 Msa0449220:CDS 30.0%
! ATATCTTTGGTGTGTTTATC+AGG - chr3_3:31651899-31651918 Msa0449220:CDS 30.0%
! TATCTTTGGTGTGTTTATCA+GGG - chr3_3:31651900-31651919 Msa0449220:CDS 30.0%
!! TCCGTTTTTCTTTTAACCTT+GGG + chr3_3:31652069-31652088 None:intergenic 30.0%
GATCTGCTGAAATATGTAAT+AGG - chr3_3:31652127-31652146 Msa0449220:exon 30.0%
TTCAGATTAAAAATCTCTGC+AGG + chr3_3:31652227-31652246 None:intergenic 30.0%
TAAATAAACAGAACAAGGCT+AGG + chr3_3:31652338-31652357 None:intergenic 30.0%
TTGTAAGATACTGATAACCA+TGG + chr3_3:31652595-31652614 None:intergenic 30.0%
! ATCTCTAGTGTGTATCTTTT+TGG - chr3_3:31652665-31652684 Msa0449220:intron 30.0%
CAAGTGAAAAGAATTGCAAA+AGG - chr3_3:31652897-31652916 Msa0449220:five_prime_UTR 30.0%
!!! AAGACCTTTTCTGAAATAAG+TGG + chr3_3:31652963-31652982 None:intergenic 30.0%
TGTGTCTCTCATTCACATAT+GGG + chr3_3:31646743-31646762 None:intergenic 35.0%
TTGTGTCTCTCATTCACATA+TGG + chr3_3:31646744-31646763 None:intergenic 35.0%
TAGAAGTGGAATGAAAGAAC+GGG + chr3_3:31646789-31646808 None:intergenic 35.0%
GTAGAAGTGGAATGAAAGAA+CGG + chr3_3:31646790-31646809 None:intergenic 35.0%
TGAAATCATTGAAGGAAGGA+AGG + chr3_3:31646848-31646867 None:intergenic 35.0%
CCTATGAAATCATTGAAGGA+AGG + chr3_3:31646852-31646871 None:intergenic 35.0%
CCTTCCTTCAATGATTTCAT+AGG - chr3_3:31646849-31646868 Msa0449220:intron 35.0%
CATTAAACTAACAGCCAAGA+TGG + chr3_3:31647020-31647039 None:intergenic 35.0%
GCAGTCAAATATGACAGATA+CGG - chr3_3:31647075-31647094 Msa0449220:intron 35.0%
TTTCAATGTCTTTGACAACG+CGG + chr3_3:31647113-31647132 None:intergenic 35.0%
CTGTGAAAACATTCACAGTA+TGG + chr3_3:31647151-31647170 None:intergenic 35.0%
! CTGTGAATGTTTTCACAGTA+TGG - chr3_3:31647153-31647172 Msa0449220:intron 35.0%
ACTCTGATATTTCAGCCATA+TGG + chr3_3:31647360-31647379 None:intergenic 35.0%
CGAAATATTGCAGTTGTTTG+TGG - chr3_3:31647444-31647463 Msa0449220:intron 35.0%
! TGTAGGGATTTTATAAGGTC+TGG - chr3_3:31647529-31647548 Msa0449220:intron 35.0%
! GGATTTTATAAGGTCTGGTT+TGG - chr3_3:31647534-31647553 Msa0449220:intron 35.0%
ATCATTATTATGGCGACGAA+AGG - chr3_3:31647577-31647596 Msa0449220:intron 35.0%
TCATTATTATGGCGACGAAA+GGG - chr3_3:31647578-31647597 Msa0449220:intron 35.0%
! TTCATTGTAGTTGCTTTGTG+TGG - chr3_3:31647643-31647662 Msa0449220:intron 35.0%
ATATCTTAGGTTTGTGGCAA+AGG - chr3_3:31647674-31647693 Msa0449220:intron 35.0%
CAATGCAATTTCTCTTCTTC+AGG + chr3_3:31647949-31647968 None:intergenic 35.0%
CAGAATTGGATACAGTATGA+AGG - chr3_3:31648081-31648100 Msa0449220:intron 35.0%
! ACTTGCAAGTGTTATTCCAT+TGG - chr3_3:31648170-31648189 Msa0449220:intron 35.0%
CTAATCATCCCATTATCCAA+TGG + chr3_3:31648189-31648208 None:intergenic 35.0%
AACAAGGATGTTAGGTTAGT+AGG + chr3_3:31648248-31648267 None:intergenic 35.0%
ATGCAAACCATTATGCATAG+AGG + chr3_3:31648561-31648580 None:intergenic 35.0%
GAGCTTATAAGTATTAGCCA+GGG + chr3_3:31648612-31648631 None:intergenic 35.0%
AGAGCTTATAAGTATTAGCC+AGG + chr3_3:31648613-31648632 None:intergenic 35.0%
CAGGGTTAAAAGTGGAAAAT+GGG + chr3_3:31648870-31648889 None:intergenic 35.0%
! AGCACAAGTTCAATTTGCTT+TGG - chr3_3:31649035-31649054 Msa0449220:CDS 35.0%
!! GTTCAATTTGCTTTGGAAAG+AGG - chr3_3:31649042-31649061 Msa0449220:CDS 35.0%
GATCCGACTAATTAATTCCT+CGG - chr3_3:31649226-31649245 Msa0449220:CDS 35.0%
AATTCTTAGGTGTCTAGAGA+CGG + chr3_3:31649306-31649325 None:intergenic 35.0%
!!! ATTGGAACTTTTTTCTCAGG+TGG - chr3_3:31649368-31649387 Msa0449220:CDS 35.0%
TAGTTGTTCTTCCAGTTGAT+TGG + chr3_3:31649458-31649477 None:intergenic 35.0%
AAGCAATTACCAGACATCAT+CGG + chr3_3:31649666-31649685 None:intergenic 35.0%
AATAACCGAACTTGCGAAAT+AGG + chr3_3:31649919-31649938 None:intergenic 35.0%
TATTTCGCAAGTTCGGTTAT+TGG - chr3_3:31649918-31649937 Msa0449220:intron 35.0%
ACACCTTCAATATGAAGTGT+CGG + chr3_3:31650070-31650089 None:intergenic 35.0%
TCTCAAATTATTGCCAGTGT+AGG - chr3_3:31650149-31650168 Msa0449220:CDS 35.0%
TCAGTGCTTCATAGTTACAT+AGG - chr3_3:31650200-31650219 Msa0449220:CDS 35.0%
AATGTCTAGGTACAAGAAGA+TGG - chr3_3:31650324-31650343 Msa0449220:intron 35.0%
AATAACTGTGTGGATACATG+AGG + chr3_3:31650445-31650464 None:intergenic 35.0%
TGTATCCACACAGTTATTTG+AGG - chr3_3:31650447-31650466 Msa0449220:intron 35.0%
AACATGTGAATGCTTACAAG+CGG - chr3_3:31650491-31650510 Msa0449220:intron 35.0%
! CTCTGTTTTCTCTTTCCTTT+TGG - chr3_3:31650721-31650740 Msa0449220:CDS 35.0%
GTAAGGACTGTATCTATGTT+TGG + chr3_3:31650823-31650842 None:intergenic 35.0%
GTTGAGGTTATATAGGGATT+CGG - chr3_3:31651139-31651158 Msa0449220:intron 35.0%
TTGAGGTTATATAGGGATTC+GGG - chr3_3:31651140-31651159 Msa0449220:intron 35.0%
! TTCCTTGTTTGATTGGGATT+AGG + chr3_3:31651249-31651268 None:intergenic 35.0%
ATCTTAGACTAACTCAGAAG+AGG + chr3_3:31651298-31651317 None:intergenic 35.0%
AACTCAGCCAAAATGAATTC+GGG - chr3_3:31651338-31651357 Msa0449220:intron 35.0%
! CTTTAGTCCCGAATTCATTT+TGG + chr3_3:31651348-31651367 None:intergenic 35.0%
AATGAATTCGGGACTAAAGA+TGG - chr3_3:31651349-31651368 Msa0449220:intron 35.0%
ATGAATTCGGGACTAAAGAT+GGG - chr3_3:31651350-31651369 Msa0449220:intron 35.0%
GCAATTAGGTTTGATGTGTT+TGG + chr3_3:31651711-31651730 None:intergenic 35.0%
TGTTTGCAATATGCATGCTA+TGG - chr3_3:31651979-31651998 Msa0449220:CDS 35.0%
GTTTGCAATATGCATGCTAT+GGG - chr3_3:31651980-31651999 Msa0449220:CDS 35.0%
!! CCGTTTTTCTTTTAACCTTG+GGG + chr3_3:31652068-31652087 None:intergenic 35.0%
CCCCAAGGTTAAAAGAAAAA+CGG - chr3_3:31652065-31652084 Msa0449220:CDS 35.0%
!! CTCCGTTTTTCTTTTAACCT+TGG + chr3_3:31652070-31652089 None:intergenic 35.0%
TCACTGAAAGCAAATTTAGC+AGG + chr3_3:31652187-31652206 None:intergenic 35.0%
TATGACCTTATCCATGCAAA+TGG - chr3_3:31652413-31652432 Msa0449220:intron 35.0%
AAACACCATTTGCATGGATA+AGG + chr3_3:31652421-31652440 None:intergenic 35.0%
AACTTACGCATTCTTGTACA+AGG + chr3_3:31652447-31652466 None:intergenic 35.0%
CTAAATTGAACCCAATTGCT+AGG - chr3_3:31652641-31652660 Msa0449220:intron 35.0%
ACTAGAGATTCCTAGCAATT+GGG + chr3_3:31652654-31652673 None:intergenic 35.0%
! TTTTGGTCCTCATCTTGATT+AGG - chr3_3:31652682-31652701 Msa0449220:intron 35.0%
! GTAGTTTGCATTACACGATT+AGG + chr3_3:31652749-31652768 None:intergenic 35.0%
CGTGTAATGCAAACTACTTT+AGG - chr3_3:31652752-31652771 Msa0449220:intron 35.0%
ATTGATCATCACCAGAGTTA+GGG + chr3_3:31652782-31652801 None:intergenic 35.0%
GAATTGCAAAAGGAATGAGA+TGG - chr3_3:31652907-31652926 Msa0449220:five_prime_UTR 35.0%
GAGATGGAATACAAAAATGG+TGG - chr3_3:31652923-31652942 Msa0449220:five_prime_UTR 35.0%
TGGTCCACTTATTTCAGAAA+AGG - chr3_3:31652956-31652975 Msa0449220:five_prime_UTR 35.0%
! TTCCGTTTCCTCGAACTTTT+CGG - chr3_3:31646714-31646733 Msa0449220:CDS 40.0%
GTGATTGTGCATTGTAGAAG+TGG + chr3_3:31646803-31646822 None:intergenic 40.0%
GGGTCCTATGAAATCATTGA+AGG + chr3_3:31646856-31646875 None:intergenic 40.0%
!!! CAAAGGAGTGGTTTTGGAAA+AGG - chr3_3:31647691-31647710 Msa0449220:intron 40.0%
! ACTCACCATGATAATGATGC+TGG - chr3_3:31647781-31647800 Msa0449220:intron 40.0%
ACTTGATCATCGACATCATC+AGG + chr3_3:31647811-31647830 None:intergenic 40.0%
TGATGTCGATGATCAAGTCA+AGG - chr3_3:31647813-31647832 Msa0449220:intron 40.0%
TGCAATTTCTCTTCTTCAGG+AGG + chr3_3:31647946-31647965 None:intergenic 40.0%
CGTAGAATATCCTTTAGGTG+CGG + chr3_3:31647980-31647999 None:intergenic 40.0%
AACGGCGTAGAATATCCTTT+AGG + chr3_3:31647985-31648004 None:intergenic 40.0%
TTGTAAGGCGCATTTGCAAA+CGG + chr3_3:31648036-31648055 None:intergenic 40.0%
!!! AATGTTTTTAGGTTCCCTGG+TGG - chr3_3:31648105-31648124 Msa0449220:intron 40.0%
! ACTGCATTAGATACTGGTTG+TGG - chr3_3:31648210-31648229 Msa0449220:intron 40.0%
! CTGCATTAGATACTGGTTGT+GGG - chr3_3:31648211-31648230 Msa0449220:intron 40.0%
! TGCATTAGATACTGGTTGTG+GGG - chr3_3:31648212-31648231 Msa0449220:intron 40.0%
AATAGCAGCTATAAGCGTAG+TGG + chr3_3:31648374-31648393 None:intergenic 40.0%
TGTTGGTCCTCTATGCATAA+TGG - chr3_3:31648407-31648426 Msa0449220:intron 40.0%
CATGCAACCATTATGCATAG+AGG + chr3_3:31648417-31648436 None:intergenic 40.0%
AATAGCAGCTATAAGCGTAG+CGG + chr3_3:31648374-31648393 None:intergenic 40.0%
TGTTGGTCCTCTATGCATAA+TGG - chr3_3:31648407-31648426 Msa0449220:intron 40.0%
GTAGCAGCACTTAAGATTGA+AGG - chr3_3:31648636-31648655 Msa0449220:intron 40.0%
! CTTAAGATTGAAGGCATGTC+CGG - chr3_3:31648645-31648664 Msa0449220:intron 40.0%
! AACGCATATCGGTGTGTTTT+TGG + chr3_3:31648680-31648699 None:intergenic 40.0%
GCAGGGTTAAAAGTGGAAAA+TGG + chr3_3:31648871-31648890 None:intergenic 40.0%
!! TTCCTGTCATTGATAATGCC+AGG - chr3_3:31648939-31648958 Msa0449220:intron 40.0%
AACCTGGCATTATCAATGAC+AGG + chr3_3:31648944-31648963 None:intergenic 40.0%
ATAATGCCAGGTTGCTAGTT+GGG - chr3_3:31648951-31648970 Msa0449220:intron 40.0%
TTGCAATGTCAATTGCACCA+AGG - chr3_3:31649001-31649020 Msa0449220:intron 40.0%
TGCAATGTCAATTGCACCAA+GGG - chr3_3:31649002-31649021 Msa0449220:intron 40.0%
! ATTATGCTGCCTTTTCCTTC+TGG - chr3_3:31649096-31649115 Msa0449220:CDS 40.0%
TCAAAAGCTCCAGAAGGAAA+AGG + chr3_3:31649108-31649127 None:intergenic 40.0%
AGGCCGAGGAATTAATTAGT+CGG + chr3_3:31649232-31649251 None:intergenic 40.0%
AGAGACGGTCCAAACAAATA+CGG + chr3_3:31649291-31649310 None:intergenic 40.0%
GTCTCTAGACACCTAAGAAT+TGG - chr3_3:31649305-31649324 Msa0449220:CDS 40.0%
TTGTTCTTCCAGTTGATTGG+AGG + chr3_3:31649455-31649474 None:intergenic 40.0%
ACACTGCTAAACTTCTTTGC+TGG - chr3_3:31649534-31649553 Msa0449220:intron 40.0%
CACTGCTAAACTTCTTTGCT+GGG - chr3_3:31649535-31649554 Msa0449220:intron 40.0%
TGGGAAAAGAAACACGAGAA+AGG - chr3_3:31649554-31649573 Msa0449220:intron 40.0%
AGAAAGGTGAAATTGCGATC+TGG - chr3_3:31649570-31649589 Msa0449220:intron 40.0%
AACCAGATTCTGTGTCAACA+TGG - chr3_3:31649776-31649795 Msa0449220:intron 40.0%
AGATTCTGTGTCAACATGGA+CGG - chr3_3:31649780-31649799 Msa0449220:intron 40.0%
!! CTTCATATTGAAGGTGTCTC+CGG - chr3_3:31650073-31650092 Msa0449220:CDS 40.0%
CCAATGGTCCATAATCCAAA+GGG + chr3_3:31650276-31650295 None:intergenic 40.0%
ACCAATGGTCCATAATCCAA+AGG + chr3_3:31650277-31650296 None:intergenic 40.0%
ATCCACACAGTTATTTGAGG+AGG - chr3_3:31650450-31650469 Msa0449220:intron 40.0%
ACATGTGAATGCTTACAAGC+GGG - chr3_3:31650492-31650511 Msa0449220:intron 40.0%
!! ACAAAATTATTGACTCGGGG+AGG - chr3_3:31650518-31650537 Msa0449220:intron 40.0%
!! AATGTGATGGACATGAATGC+TGG - chr3_3:31650547-31650566 Msa0449220:intron 40.0%
!!! ATGGACATGAATGCTGGTTT+TGG - chr3_3:31650553-31650572 Msa0449220:CDS 40.0%
CCATAATTTGGGAGAATCCA+GGG + chr3_3:31650593-31650612 None:intergenic 40.0%
CCTGGATTCTCCCAAATTAT+GGG - chr3_3:31650591-31650610 Msa0449220:CDS 40.0%
! ATATTCGAGCGTGGATTGAT+TGG - chr3_3:31650661-31650680 Msa0449220:CDS 40.0%
TTCACAGAGGAAAAGCCAAA+AGG + chr3_3:31650739-31650758 None:intergenic 40.0%
AGAGTAAGAACAGTAGCGTA+AGG + chr3_3:31650840-31650859 None:intergenic 40.0%
ACTTCTCTTTATCCAGCAGA+TGG + chr3_3:31650999-31651018 None:intergenic 40.0%
CTCCTAATCCCAATCAAACA+AGG - chr3_3:31651244-31651263 Msa0449220:intron 40.0%
ATTGCATGTGACTGGAGATA+AGG - chr3_3:31651377-31651396 Msa0449220:intron 40.0%
GATAAGGACATAATGCCTTG+AGG - chr3_3:31651393-31651412 Msa0449220:intron 40.0%
CAACTAACAGTGGCTTATGT+CGG + chr3_3:31651480-31651499 None:intergenic 40.0%
! AACTTTTGCATAGCACTCTG+GGG + chr3_3:31651617-31651636 None:intergenic 40.0%
! GAACTTTTGCATAGCACTCT+GGG + chr3_3:31651618-31651637 None:intergenic 40.0%
! TGAACTTTTGCATAGCACTC+TGG + chr3_3:31651619-31651638 None:intergenic 40.0%
ATCAAACCTAATTGCGGAGA+AGG - chr3_3:31651716-31651735 Msa0449220:CDS 40.0%
TCAAACCTAATTGCGGAGAA+GGG - chr3_3:31651717-31651736 Msa0449220:CDS 40.0%
! GGGCAATCATCATTTGTTAC+CGG - chr3_3:31652000-31652019 Msa0449220:CDS 40.0%
! GGCAATCATCATTTGTTACC+GGG - chr3_3:31652001-31652020 Msa0449220:CDS 40.0%
! CATTTGTTACCGGGTATAGA+CGG - chr3_3:31652010-31652029 Msa0449220:CDS 40.0%
AAACATCTACCGTCTATACC+CGG + chr3_3:31652022-31652041 None:intergenic 40.0%
GTCATAAGTCCTTGGATATG+TGG + chr3_3:31652399-31652418 None:intergenic 40.0%
TGGATAAGGTCATAAGTCCT+TGG + chr3_3:31652407-31652426 None:intergenic 40.0%
AGGTGAAAACACCATTTGCA+TGG + chr3_3:31652427-31652446 None:intergenic 40.0%
TGCTTAGACATGTACAAGCT+AGG + chr3_3:31652485-31652504 None:intergenic 40.0%
CACTAGAGATTCCTAGCAAT+TGG + chr3_3:31652655-31652674 None:intergenic 40.0%
AGACGAGATTTATCACAGTG+AGG + chr3_3:31652708-31652727 None:intergenic 40.0%
!! CTTTAGGTTTTCCCTAACTC+TGG - chr3_3:31652768-31652787 Msa0449220:intron 40.0%
CATTGATCATCACCAGAGTT+AGG + chr3_3:31652783-31652802 None:intergenic 40.0%
GTTATATTCCGAGATCAGGT+TGG - chr3_3:31652864-31652883 Msa0449220:five_prime_UTR 40.0%
!! TACAAAAATGGTGGATCACG+AGG - chr3_3:31652932-31652951 Msa0449220:five_prime_UTR 40.0%
CTCCGAAAAGTTCGAGGAAA+CGG + chr3_3:31646719-31646738 None:intergenic 45.0%
TGATGAACGACTCCGAATTG+TGG - chr3_3:31647200-31647219 Msa0449220:intron 45.0%
ATGCCTCCTCAACCACAATT+CGG + chr3_3:31647215-31647234 None:intergenic 45.0%
TTAGGTTTGTGGCAAAGGAG+TGG - chr3_3:31647679-31647698 Msa0449220:intron 45.0%
! TTGTGGCAAAGGAGTGGTTT+TGG - chr3_3:31647685-31647704 Msa0449220:intron 45.0%
GCGTTCCAGCATCATTATCA+TGG + chr3_3:31647789-31647808 None:intergenic 45.0%
TCATTGCTCTCGCTTGATCA+TGG + chr3_3:31647882-31647901 None:intergenic 45.0%
GATATTCTACGCCGTTTCCT+TGG - chr3_3:31647989-31648008 Msa0449220:intron 45.0%
TAATCACGACTCTTAGGCCA+AGG + chr3_3:31648009-31648028 None:intergenic 45.0%
GGCACATAATCACGACTCTT+AGG + chr3_3:31648015-31648034 None:intergenic 45.0%
TCAACCGTCAGACTCTTGTA+AGG + chr3_3:31648051-31648070 None:intergenic 45.0%
TTGAGAAGGCTGTGCAGAAT+TGG - chr3_3:31648067-31648086 Msa0449220:intron 45.0%
!!! GGGAATGTTTTTAGGTTCCC+TGG - chr3_3:31648102-31648121 Msa0449220:intron 45.0%
GTTGGCAGGGTTGTCAATTA+TGG - chr3_3:31648289-31648308 Msa0449220:intron 45.0%
!!! GTGTTTTTGGTGTCAGACAC+CGG + chr3_3:31648667-31648686 None:intergenic 45.0%
AGAAGCCTTGACATCAGACA+GGG + chr3_3:31648764-31648783 None:intergenic 45.0%
AAGAAGCCTTGACATCAGAC+AGG + chr3_3:31648765-31648784 None:intergenic 45.0%
CACACATGCAGGGTTAAAAG+TGG + chr3_3:31648878-31648897 None:intergenic 45.0%
GATAATGCCAGGTTGCTAGT+TGG - chr3_3:31648950-31648969 Msa0449220:intron 45.0%
TAATGCCAGGTTGCTAGTTG+GGG - chr3_3:31648952-31648971 Msa0449220:intron 45.0%
!! AGAGGTGTTCCTGCAATCAT+TGG - chr3_3:31649060-31649079 Msa0449220:CDS 45.0%
CCAAGAACACCAATGATTGC+AGG + chr3_3:31649072-31649091 None:intergenic 45.0%
! CCTGCAATCATTGGTGTTCT+TGG - chr3_3:31649069-31649088 Msa0449220:CDS 45.0%
!!! TCCTTCTGGAGCTTTTGACA+TGG - chr3_3:31649110-31649129 Msa0449220:CDS 45.0%
TTCTCGCTGCTTGATTCCAT+GGG - chr3_3:31649140-31649159 Msa0449220:CDS 45.0%
TTGATTCCATGGGGTGCAAA+CGG - chr3_3:31649150-31649169 Msa0449220:CDS 45.0%
! ATCGTTTTATAACGAGGCCG+AGG + chr3_3:31649246-31649265 None:intergenic 45.0%
! GGGTAGTGGTCTAAAGCTTA+TGG + chr3_3:31649270-31649289 None:intergenic 45.0%
GACCACTACCCGTATTTGTT+TGG - chr3_3:31649279-31649298 Msa0449220:CDS 45.0%
GTCCAAACAAATACGGGTAG+TGG + chr3_3:31649284-31649303 None:intergenic 45.0%
GAGACGGTCCAAACAAATAC+GGG + chr3_3:31649290-31649309 None:intergenic 45.0%
!! CTCAGGTGGATTGTACATGA+AGG - chr3_3:31649382-31649401 Msa0449220:intron 45.0%
AACCACCAGGTCTAAGAACT+CGG + chr3_3:31649415-31649434 None:intergenic 45.0%
TTCTTAGACCTGGTGGTTAC+TGG - chr3_3:31649417-31649436 Msa0449220:intron 45.0%
!! GAAAGTATCCAGTAACCACC+AGG + chr3_3:31649428-31649447 None:intergenic 45.0%
GGTGGTTACTGGATACTTTC+TGG - chr3_3:31649428-31649447 Msa0449220:intron 45.0%
! TTTCTGGTCCTCCAATCAAC+TGG - chr3_3:31649444-31649463 Msa0449220:intron 45.0%
CAGCAAATTCCGATGATGTC+TGG - chr3_3:31649654-31649673 Msa0449220:intron 45.0%
GTCCATGTTGACACAGAATC+TGG + chr3_3:31649781-31649800 None:intergenic 45.0%
! TGGCATGTTTCTACCGTAAG+TGG - chr3_3:31649883-31649902 Msa0449220:intron 45.0%
AGGTTGGGACTAACCACTTA+CGG + chr3_3:31649899-31649918 None:intergenic 45.0%
CCGAACTTGCGAAATAGGTT+GGG + chr3_3:31649914-31649933 None:intergenic 45.0%
CCCAACCTATTTCGCAAGTT+CGG - chr3_3:31649911-31649930 Msa0449220:intron 45.0%
ACCGAACTTGCGAAATAGGT+TGG + chr3_3:31649915-31649934 None:intergenic 45.0%
TCGCAAGTTCGGTTATTGGA+AGG - chr3_3:31649922-31649941 Msa0449220:intron 45.0%
! GCACCGACACTTCATATTGA+AGG - chr3_3:31650064-31650083 Msa0449220:CDS 45.0%
TGTCTGACATGCTCATACAC+CGG + chr3_3:31650095-31650114 None:intergenic 45.0%
AATTATTGCCAGTGTAGGCG+TGG - chr3_3:31650154-31650173 Msa0449220:CDS 45.0%
GTCCATAATCCAAAGGGTAG+GGG + chr3_3:31650270-31650289 None:intergenic 45.0%
GGTCCATAATCCAAAGGGTA+GGG + chr3_3:31650271-31650290 None:intergenic 45.0%
TGGTCCATAATCCAAAGGGT+AGG + chr3_3:31650272-31650291 None:intergenic 45.0%
CCCTTTGGATTATGGACCAT+TGG - chr3_3:31650273-31650292 Msa0449220:CDS 45.0%
GTAACTCCTGCTAAACCTAG+TGG - chr3_3:31650355-31650374 Msa0449220:intron 45.0%
GAACAACATTGAGTCTCTCC+GGG + chr3_3:31650396-31650415 None:intergenic 45.0%
GGAACAACATTGAGTCTCTC+CGG + chr3_3:31650397-31650416 None:intergenic 45.0%
AACAGATCCACTGGTGATTC+TGG + chr3_3:31650422-31650441 None:intergenic 45.0%
TACATGAGGAACAGATCCAC+TGG + chr3_3:31650431-31650450 None:intergenic 45.0%
GTCCTCCTCAAATAACTGTG+TGG + chr3_3:31650455-31650474 None:intergenic 45.0%
TTGAGGAGGACAACCGATTA+TGG - chr3_3:31650464-31650483 Msa0449220:intron 45.0%
CCCTGGATTCTCCCAAATTA+TGG - chr3_3:31650590-31650609 Msa0449220:CDS 45.0%
CCCATAATTTGGGAGAATCC+AGG + chr3_3:31650594-31650613 None:intergenic 45.0%
GTAGCTTTCTCAGCAATCGT+AGG + chr3_3:31650631-31650650 None:intergenic 45.0%
ATTGCTGAGAAAGCTACCCT+TGG - chr3_3:31650634-31650653 Msa0449220:CDS 45.0%
ACGCTCGAATATAACGCCAA+GGG + chr3_3:31650653-31650672 None:intergenic 45.0%
TGGGATGAATTGCATGTGAC+TGG - chr3_3:31651369-31651388 Msa0449220:intron 45.0%
ATGCCTTGAGGAGAGTTACA+CGG - chr3_3:31651405-31651424 Msa0449220:intron 45.0%
CGACATAAGCCACTGTTAGT+TGG - chr3_3:31651478-31651497 Msa0449220:intron 45.0%
ACACAGAAGCCAACTAACAG+TGG + chr3_3:31651490-31651509 None:intergenic 45.0%
CAAACCTAATTGCGGAGAAG+GGG - chr3_3:31651718-31651737 Msa0449220:CDS 45.0%
TGATACAGCTCAAGACACGA+CGG - chr3_3:31651788-31651807 Msa0449220:CDS 45.0%
GGATAAAGCATACAACCCCA+AGG - chr3_3:31652050-31652069 Msa0449220:CDS 45.0%
AAGCCTTCTCCACATATCCA+AGG - chr3_3:31652387-31652406 Msa0449220:intron 45.0%
AGTCCTTGGATATGTGGAGA+AGG + chr3_3:31652393-31652412 None:intergenic 45.0%
AGACACTGCAGTAGAAACCA+TGG - chr3_3:31652575-31652594 Msa0449220:intron 45.0%
AGTGAGGCCTAATCAAGATG+AGG + chr3_3:31652692-31652711 None:intergenic 45.0%
! ACTCTGGTGATGATCAATGC+AGG - chr3_3:31652784-31652803 Msa0449220:intron 45.0%
TGGAGATGGACCGTATCTTA+CGG - chr3_3:31652829-31652848 Msa0449220:five_prime_UTR 45.0%
AGCGGTTATATTCCGAGATC+AGG - chr3_3:31652860-31652879 Msa0449220:five_prime_UTR 45.0%
!! AAAATGGTGGATCACGAGGA+TGG - chr3_3:31652936-31652955 Msa0449220:five_prime_UTR 45.0%
!!! AAGAATTTTTTTTTTAAATT+GGG + chr3_3:31646990-31647009 None:intergenic 5.0%
!!! AAAGAATTTTTTTTTTAAAT+TGG + chr3_3:31646991-31647010 None:intergenic 5.0%
!! TATACAATTTAATATTAATT+AGG + chr3_3:31649838-31649857 None:intergenic 5.0%
!! ATTATAAAATATAATATCTT+TGG - chr3_3:31651886-31651905 Msa0449220:CDS 5.0%
ATGGGTCTCCGAAAAGTTCG+AGG + chr3_3:31646725-31646744 None:intergenic 50.0%
TTGCGTTGTGATGAAGGTGG+GGG + chr3_3:31646876-31646895 None:intergenic 50.0%
GTTGCGTTGTGATGAAGGTG+GGG + chr3_3:31646877-31646896 None:intergenic 50.0%
CGTTGCGTTGTGATGAAGGT+GGG + chr3_3:31646878-31646897 None:intergenic 50.0%
GTTGCGTTGCGTTGTGATGA+AGG + chr3_3:31646882-31646901 None:intergenic 50.0%
GACAGATACGGCCTCAATTG+TGG - chr3_3:31647087-31647106 Msa0449220:intron 50.0%
ACGACTCCGAATTGTGGTTG+AGG - chr3_3:31647206-31647225 Msa0449220:intron 50.0%
ACTCCGAATTGTGGTTGAGG+AGG - chr3_3:31647209-31647228 Msa0449220:intron 50.0%
TCGATGTAGCTATCGTCGCA+AGG + chr3_3:31647847-31647866 None:intergenic 50.0%
TGTCTCATAGCCGCACCTAA+AGG - chr3_3:31647967-31647986 Msa0449220:intron 50.0%
CGACTCTTAGGCCAAGGAAA+CGG + chr3_3:31648003-31648022 None:intergenic 50.0%
TGCGCCTTACAAGAGTCTGA+CGG - chr3_3:31648044-31648063 Msa0449220:intron 50.0%
CAAGAGTCTGACGGTTGAGA+AGG - chr3_3:31648053-31648072 Msa0449220:intron 50.0%
!!! GTTTTTAGGTTCCCTGGTGG+TGG - chr3_3:31648108-31648127 Msa0449220:intron 50.0%
GAAACTGAGTTCCACCACCA+GGG + chr3_3:31648122-31648141 None:intergenic 50.0%
TGGTGGAACTCAGTTTCCTC+AGG - chr3_3:31648125-31648144 Msa0449220:intron 50.0%
GGTGGAACTCAGTTTCCTCA+GGG - chr3_3:31648126-31648145 Msa0449220:intron 50.0%
ATGTAAGCATCAGCACCCTG+AGG + chr3_3:31648144-31648163 None:intergenic 50.0%
GAAGCCTTGACATCAGACAG+GGG + chr3_3:31648763-31648782 None:intergenic 50.0%
GCTACATGCACACACATGCA+GGG + chr3_3:31648888-31648907 None:intergenic 50.0%
AGCTACATGCACACACATGC+AGG + chr3_3:31648889-31648908 None:intergenic 50.0%
TGTGCTTCATGAGAGTCCCT+TGG + chr3_3:31649021-31649040 None:intergenic 50.0%
GCCATGTCAAAAGCTCCAGA+AGG + chr3_3:31649114-31649133 None:intergenic 50.0%
GTTCTCGCTGCTTGATTCCA+TGG - chr3_3:31649139-31649158 Msa0449220:CDS 50.0%
TCTCGCTGCTTGATTCCATG+GGG - chr3_3:31649141-31649160 Msa0449220:CDS 50.0%
GTTGACCGAGTTCTTAGACC+TGG - chr3_3:31649407-31649426 Msa0449220:intron 50.0%
ACGTCCTGAAGATGAGCTTG+AGG - chr3_3:31649490-31649509 Msa0449220:intron 50.0%
TCCTGAAGATGAGCTTGAGG+AGG - chr3_3:31649493-31649512 Msa0449220:intron 50.0%
TCCTCCTCAAGCTCATCTTC+AGG + chr3_3:31649497-31649516 None:intergenic 50.0%
ATGAGCTTGAGGAGGAGCAA+AGG - chr3_3:31649501-31649520 Msa0449220:intron 50.0%
ATGTCAGACACTGACACACG+TGG - chr3_3:31650105-31650124 Msa0449220:CDS 50.0%
AGCCCCTACCCTTTGGATTA+TGG - chr3_3:31650265-31650284 Msa0449220:CDS 50.0%
CATGCACCACTAGGTTTAGC+AGG + chr3_3:31650364-31650383 None:intergenic 50.0%
CTGCTAAACCTAGTGGTGCA+TGG - chr3_3:31650362-31650381 Msa0449220:intron 50.0%
AATGGCTTCCATGCACCACT+AGG + chr3_3:31650373-31650392 None:intergenic 50.0%
ACATTGAGTCTCTCCGGGAA+TGG + chr3_3:31650391-31650410 None:intergenic 50.0%
GTTCCTACCAGAATCACCAG+TGG - chr3_3:31650412-31650431 Msa0449220:intron 50.0%
GATCCACTGGTGATTCTGGT+AGG + chr3_3:31650418-31650437 None:intergenic 50.0%
CACGCTCGAATATAACGCCA+AGG + chr3_3:31650654-31650673 None:intergenic 50.0%
CTTGGCGTTATATTCGAGCG+TGG - chr3_3:31650652-31650671 Msa0449220:CDS 50.0%
! TACTGGTGATGACCATCTGC+TGG - chr3_3:31650984-31651003 Msa0449220:intron 50.0%
CTCCTTCAGGCCGTAAGATA+CGG + chr3_3:31652842-31652861 None:intergenic 50.0%
TATCTTACGGCCTGAAGGAG+CGG - chr3_3:31652842-31652861 Msa0449220:five_prime_UTR 50.0%
CGGAATATAACCGCTCCTTC+AGG + chr3_3:31652855-31652874 None:intergenic 50.0%
TCAGCACACCAACCTGATCT+CGG + chr3_3:31652875-31652894 None:intergenic 50.0%
! AGGTCTTGTATGCCGTCAAG+CGG - chr3_3:31652976-31652995 Msa0449220:five_prime_UTR 50.0%
GCGTTGCGTTGTGATGAAGG+TGG + chr3_3:31646879-31646898 None:intergenic 55.0%
CACAACGCAACGCAACGCAA+CGG - chr3_3:31646886-31646905 Msa0449220:intron 55.0%
TGACAACGCGGCCACAATTG+AGG + chr3_3:31647101-31647120 None:intergenic 55.0%
ATGGACGCAGCCCTAAGTTG+TGG - chr3_3:31647391-31647410 Msa0449220:intron 55.0%
GCAGCCCTAAGTTGTGGTTG+CGG - chr3_3:31647397-31647416 Msa0449220:intron 55.0%
GCCACCGCAACCACAACTTA+GGG + chr3_3:31647404-31647423 None:intergenic 55.0%
TGCCACCGCAACCACAACTT+AGG + chr3_3:31647405-31647424 None:intergenic 55.0%
GCTCTCGCTTGATCATGGCA+GGG + chr3_3:31647877-31647896 None:intergenic 55.0%
TGCTCTCGCTTGATCATGGC+AGG + chr3_3:31647878-31647897 None:intergenic 55.0%
GGAAACTGAGTTCCACCACC+AGG + chr3_3:31648123-31648142 None:intergenic 55.0%
TTGCTCATCTTGAGCAGCCC+TGG - chr3_3:31648447-31648466 Msa0449220:intron 55.0%
TTGCTCATCTTGAGCAGCCC+TGG - chr3_3:31648447-31648466 Msa0449220:intron 55.0%
CTTGACATCAGACAGGGGCA+CGG + chr3_3:31648758-31648777 None:intergenic 55.0%
ATGCTCCCCAACTAGCAACC+TGG + chr3_3:31648960-31648979 None:intergenic 55.0%
TTCTCACCGTTTGCACCCCA+TGG + chr3_3:31649159-31649178 None:intergenic 55.0%
GACCGAGTTCTTAGACCTGG+TGG - chr3_3:31649410-31649429 Msa0449220:intron 55.0%
GGAAGAACAACTACCGAGCG+TGG - chr3_3:31649465-31649484 Msa0449220:intron 55.0%
TGGTGCATGGAAGCCATTCC+CGG - chr3_3:31650375-31650394 Msa0449220:intron 55.0%
!! GGGGAGGTATCGCAATGTGA+TGG - chr3_3:31650534-31650553 Msa0449220:intron 55.0%
! TGGAAGTTTTGCTGCTGCCC+TGG - chr3_3:31650573-31650592 Msa0449220:CDS 55.0%
TGGCCGTGTAACTCTCCTCA+AGG + chr3_3:31651411-31651430 None:intergenic 55.0%
CCTTCCCCTTCTCCGCAATT+AGG + chr3_3:31651725-31651744 None:intergenic 55.0%
CCTAATTGCGGAGAAGGGGA+AGG - chr3_3:31651722-31651741 Msa0449220:CDS 55.0%
GTGGAGAAGGCTTCACACCT+GGG + chr3_3:31652380-31652399 None:intergenic 55.0%
TGTGGAGAAGGCTTCACACC+TGG + chr3_3:31652381-31652400 None:intergenic 55.0%
GACCGTATCTTACGGCCTGA+AGG - chr3_3:31652837-31652856 Msa0449220:five_prime_UTR 55.0%
TGTATGCCGTCAAGCGGTAC+TGG - chr3_3:31652982-31653001 Msa0449220:five_prime_UTR 55.0%
GTATGCCGTCAAGCGGTACT+GGG - chr3_3:31652983-31653002 Msa0449220:five_prime_UTR 55.0%
TGCAACCCAGTACCGCTTGA+CGG + chr3_3:31652991-31653010 None:intergenic 55.0%
GCCCTAAGTTGTGGTTGCGG+TGG - chr3_3:31647400-31647419 Msa0449220:intron 60.0%
ATGGCGACGAAAGGGAACCC+TGG - chr3_3:31647586-31647605 Msa0449220:intron 60.0%
CGTGCCCCTGTCTGATGTCA+AGG - chr3_3:31648756-31648775 Msa0449220:intron 60.0%
CTTCAGGACGTTGCCACGCT+CGG + chr3_3:31649481-31649500 None:intergenic 60.0%
CAACACTGCCACGCCTACAC+TGG + chr3_3:31650165-31650184 None:intergenic 60.0%
ACTGTGCAGCCCCTACCCTT+TGG - chr3_3:31650258-31650277 Msa0449220:CDS 60.0%
! GTCAAGCGGTACTGGGTTGC+AGG - chr3_3:31652990-31653009 Msa0449220:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 31646708 31653015 31646708 ID=Msa0449220;Name=Msa0449220
chr3_3 mRNA 31646708 31653015 31646708 ID=Msa0449220-mRNA-1;Parent=Msa0449220;Name=Msa0449220-mRNA-1;_AED=0.09;_eAED=0.16;_QI=266|0.83|0.85|1|0.83|0.71|7|0|582
chr3_3 exon 31646708 31646864 31646708 ID=Msa0449220-mRNA-1:exon:5856;Parent=Msa0449220-mRNA-1
chr3_3 exon 31647264 31647341 31647264 ID=Msa0449220-mRNA-1:exon:5855;Parent=Msa0449220-mRNA-1
chr3_3 exon 31649025 31649390 31649025 ID=Msa0449220-mRNA-1:exon:5854;Parent=Msa0449220-mRNA-1
chr3_3 exon 31650048 31650336 31650048 ID=Msa0449220-mRNA-1:exon:5853;Parent=Msa0449220-mRNA-1
chr3_3 exon 31650552 31650762 31650552 ID=Msa0449220-mRNA-1:exon:5852;Parent=Msa0449220-mRNA-1
chr3_3 exon 31651490 31652189 31651490 ID=Msa0449220-mRNA-1:exon:5851;Parent=Msa0449220-mRNA-1
chr3_3 exon 31652802 31653015 31652802 ID=Msa0449220-mRNA-1:exon:5850;Parent=Msa0449220-mRNA-1
chr3_3 five_prime_UTR 31652802 31653015 31652802 ID=Msa0449220-mRNA-1:five_prime_utr;Parent=Msa0449220-mRNA-1
chr3_3 five_prime_UTR 31652138 31652189 31652138 ID=Msa0449220-mRNA-1:five_prime_utr;Parent=Msa0449220-mRNA-1
chr3_3 CDS 31651490 31652137 31651490 ID=Msa0449220-mRNA-1:cds;Parent=Msa0449220-mRNA-1
chr3_3 CDS 31650552 31650762 31650552 ID=Msa0449220-mRNA-1:cds;Parent=Msa0449220-mRNA-1
chr3_3 CDS 31650048 31650336 31650048 ID=Msa0449220-mRNA-1:cds;Parent=Msa0449220-mRNA-1
chr3_3 CDS 31649025 31649390 31649025 ID=Msa0449220-mRNA-1:cds;Parent=Msa0449220-mRNA-1
chr3_3 CDS 31647264 31647341 31647264 ID=Msa0449220-mRNA-1:cds;Parent=Msa0449220-mRNA-1
chr3_3 CDS 31646708 31646864 31646708 ID=Msa0449220-mRNA-1:cds;Parent=Msa0449220-mRNA-1
Gene Sequence

>Msa0449220

ATGGCGACGAAAGGGAACCCTGGAGATAATAGAAACAATAAAGGTCCAGTGTCAATTTTCATTGTAGTTGCTTTGTGTGGTTTCTTCTATATCTTAGGTTTGTGGCAAAGGAGTGGTTTTGGAAAAGGAGATAGCATTGCTGTTGAGATTACTAAACACACAGATTGTAGTGTTCTCTCTGATCTAAATTACGAAACTCACCATGATAATGATGCTGGAACGCCTGATGATGTCGATGATCAAGTCAAGGAATTCAAGCCTTGCGACGATAGCTACATCGATTACACACCCTGCCATGATCAAGCGAGAGCAATGACGTTTCCGCGAGAGAATATGAATTATAGAGAAAGGCATTGTCCTCCTGAAGAAGAGAAATTGCATTGTCTCATAGCCGCACCTAAAGGATATTCTACGCCGTTTCCTTGGCCTAAGAGTCGTGATTATGTGCCGTTTGCAAATGCGCCTTACAAGAGTCTGACGGTTGAGAAGGCTGTGCAGAATTGGATACAGTATGAAGGGAATGTTTTTAGGTTCCCTGGTGGTGGAACTCAGTTTCCTCAGGGTGCTGATGCTTACATTAATCAACTTGCAAGTGTTATTCCATTGGATAATGGGATGATTAGAACTGCATTAGATACTGGTTGTGGGGTTGCTAGTTGGGGAGCATATTTGTTCAAGAAAAATGTTATTGCAATGTCAATTGCACCAAGGGACTCTCATGAAGCACAAGTTCAATTTGCTTTGGAAAGAGGTGTTCCTGCAATCATTGGTGTTCTTGGAACAATTATGCTGCCTTTTCCTTCTGGAGCTTTTGACATGGCACATTGTTCTCGCTGCTTGATTCCATGGGGTGCAAACGGTGGATTGTACATGAAGGAAGTTGACCGAGTTCTTAGACCTGGTGGTTACTGGATACTTTCTGGTCCTCCAATCAACTGGAAGAACAACTACCGAGCGTGGCAACGTCCTGAAGATGAGCTTGAGGAGGAGCAAAGGCAAATTGAGAACACTGCTAAACTTCTTTGCTGGGAAAAGAAACACGAGAAAGGTGAAATTGCGATCTGGAGAAAAGCATTAAACATTGATGAATGCGGTGAGCAAGATACTCAACCTACAATATGTGAATCAGCAAATTCCGATGATGTCTGGTACAAGAAGATGGACAATTGTGTAACTCCTGCTAAACCTAGTGGTGCATGGAAGCCATTCCCGGAGAGACTCAATGTTGTTCCTACCAGAATCACCAGTGGATCTGTTCCTCATGTATCCACACAGTTATTTGAGGAGGACAACCGATTATGGAAGAAACATGTGAATGCTTACAAGCGGGTTAACAAAATTATTGACTCGGGGAGGTATCGCAATGTGATGGACATGAATGCTGGTTTTGGAAGTTTTGCTGCTGCCCTGGATTCTCCCAAATTATGGGTTATGAATGTCGTGCCTACGATTGCTGAGAAAGCTACCCTTGGCGTTATATTCGAGCGTGGATTGATTGGAATTTATCATGATTGGTGTGAAGCCTTCTCCACATATCCAAGGACTTATGACCTTATCCATGCAAATGGTGTTTTCACCTTGTACAAGAATGCGAGCGGTTATATTCCGAGATCAGGTTGGTGTGCTGAAGCAAGTGAAAAGAATTGCAAAAGGAATGAGATGGAATACAAAAATGGTGGATCACGAGGATGGTCCACTTATTTCAGAAAAGGTCTTGTATGCCGTCAAGCGGTACTGGGTTGCAGGTGA
Protein sequence

>Msa0449220

MATKGNPGDNRNNKGPVSIFIVVALCGFFYILGLWQRSGFGKGDSIAVEITKHTDCSVLSDLNYETHHDNDAGTPDDVDDQVKEFKPCDDSYIDYTPCHDQARAMTFPRENMNYRERHCPPEEEKLHCLIAAPKGYSTPFPWPKSRDYVPFANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPQGADAYINQLASVIPLDNGMIRTALDTGCGVASWGAYLFKKNVIAMSIAPRDSHEAQVQFALERGVPAIIGVLGTIMLPFPSGAFDMAHCSRCLIPWGANGGLYMKEVDRVLRPGGYWILSGPPINWKNNYRAWQRPEDELEEEQRQIENTAKLLCWEKKHEKGEIAIWRKALNIDECGEQDTQPTICESANSDDVWYKKMDNCVTPAKPSGAWKPFPERLNVVPTRITSGSVPHVSTQLFEEDNRLWKKHVNAYKRVNKIIDSGRYRNVMDMNAGFGSFAAALDSPKLWVMNVVPTIAEKATLGVIFERGLIGIYHDWCEAFSTYPRTYDLIHANGVFTLYKNASGYIPRSGWCAEASEKNCKRNEMEYKNGGSRGWSTYFRKGLVCRQAVLGCR*