AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515400 MtrunA17_Chr3g0124681 99.259 270 2 0 1 270 1 270 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515400 AT1G44575.1 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0515400 AT1G44575.3 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0515400 AT1G44575.2 69.271 192 49 4 1 190 1 184 1.27e-61 193
Msa0515400 AT1G44575.2 71.429 49 14 0 194 242 84 132 4.65e-16 75.1

Find 60 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGTTCAATTTCAGTAAT+TGG 0.150098 3_4:+66628010 None:intergenic
AATTCTAGCACAATTGAATT+TGG 0.184443 3_4:-66628568 Msa0515400:CDS
TGCATGTTAGGTCCTTTATT+TGG 0.212751 3_4:-66628157 Msa0515400:intron
GACGGTATCTTTGGAACTTC+TGG 0.213220 3_4:-66629708 Msa0515400:CDS
AACAAACAATTCATTGGATT+TGG 0.255758 3_4:+66628129 None:intergenic
AATTACAGTGTCAAAGATTA+AGG 0.268924 3_4:-66629989 Msa0515400:CDS
TTGATTGGAGAAATTATTAC+TGG 0.283745 3_4:-66628073 Msa0515400:CDS
TTTGGAACTTCTGGAGGATT+TGG 0.286142 3_4:-66629699 Msa0515400:CDS
AGAGGCTCAGCTTCATAAAT+TGG 0.298533 3_4:+66628534 None:intergenic
AAGGTTGAAGACGGTATCTT+TGG 0.304720 3_4:-66629717 Msa0515400:CDS
CATTTGCAGGCATCAATATT+AGG 0.305704 3_4:-66628612 Msa0515400:intron
TTCATTGCTGCTTTGAATCC+TGG 0.310194 3_4:-66627962 Msa0515400:CDS
TGTTGGAAGATTGGCTCAAT+TGG 0.313349 3_4:-66628110 Msa0515400:CDS
TCTTCCAACAAACAATTCAT+TGG 0.342233 3_4:+66628123 None:intergenic
GATTTGGTGAATCCAAATAA+AGG 0.360093 3_4:+66628145 None:intergenic
GTGGTTCAATTTCAGTAATT+GGG 0.365857 3_4:+66628011 None:intergenic
GCACAATTGAATTTGGAAAC+TGG 0.368263 3_4:-66628561 Msa0515400:CDS
TTCACCTTGCTAGGAGCAAT+TGG 0.376343 3_4:-66628492 Msa0515400:CDS
TTAGATCAGCTCTTGGTCTC+AGG 0.379018 3_4:-66628395 Msa0515400:CDS
GTTACAAAAGTGCCAGTTCC+AGG 0.380949 3_4:+66627944 None:intergenic
TGAATTGTTTGTTGGAAGAT+TGG 0.385211 3_4:-66628119 Msa0515400:CDS
AAGATACCGTCTTCAACCTT+TGG 0.385621 3_4:+66629720 None:intergenic
CCGTCTTCAACCTTTGGCTT+TGG 0.388978 3_4:+66629726 None:intergenic
AAATCCAATGAATTGTTTGT+TGG 0.392325 3_4:-66628127 Msa0515400:CDS
AAGCAGAATGAACTCTTTGT+TGG 0.396845 3_4:-66629669 Msa0515400:CDS
AGTGTCAAAGATTAAGGCCT+AGG 0.399815 3_4:-66629983 Msa0515400:CDS
GTTGGAAGATTGGCTCAATT+GGG 0.400071 3_4:-66628109 Msa0515400:CDS
TGGAGAAATTATTACTGGTA+AGG 0.421923 3_4:-66628068 Msa0515400:CDS
ATCACGTACATTCACTACTT+TGG 0.425907 3_4:-66629910 Msa0515400:CDS
ATATTAGGTGAAGCATTAAC+TGG 0.440539 3_4:-66628597 Msa0515400:CDS
CACTTAGAATTTGAAGGAAG+TGG 0.453095 3_4:+66629939 None:intergenic
GGAGTTATTCCTCCAGGAAA+AGG 0.455401 3_4:-66628420 Msa0515400:CDS
GCTGCTTTGAATCCTGGAAC+TGG 0.462882 3_4:-66627956 Msa0515400:CDS
GCTCAGCTCAACATTGAGAC+TGG 0.484090 3_4:-66628037 Msa0515400:CDS
CTCAGCTCAACATTGAGACT+GGG 0.497814 3_4:-66628036 Msa0515400:CDS
GGAATAACTCCTCCAGTGTT+AGG 0.502221 3_4:+66628432 None:intergenic
CTAGGAGCAATTGGAGCTCT+AGG 0.503669 3_4:-66628483 Msa0515400:CDS
GGAGAAATTATTACTGGTAA+GGG 0.507917 3_4:-66628067 Msa0515400:CDS
GTTGGTCGTGTTGCTATGAT+CGG 0.516308 3_4:-66629651 Msa0515400:CDS
ACTTAGAATTTGAAGGAAGT+GGG 0.519799 3_4:+66629940 None:intergenic
GACACTGTAATTGAAGCAAA+GGG 0.525415 3_4:+66630000 None:intergenic
TGACACTGTAATTGAAGCAA+AGG 0.531256 3_4:+66629999 None:intergenic
TAGATCAGCTCTTGGTCTCA+GGG 0.538741 3_4:-66628394 Msa0515400:CDS
GGTGAAGCATTAACTGGCAA+AGG 0.540137 3_4:-66628591 Msa0515400:CDS
AAAGGATTTAGATCAGCTCT+TGG 0.544811 3_4:-66628402 Msa0515400:CDS
AGGGTCTTTCTTCAAATCAA+CGG 0.564642 3_4:+66630019 None:intergenic
ACTGGAGGAGTTATTCCTCC+AGG 0.573363 3_4:-66628426 Msa0515400:CDS
AGCTCCAATTGCTCCTAGCA+AGG 0.578065 3_4:+66628488 None:intergenic
AAAGACTAAAGCCCCTGCTA+AGG 0.578848 3_4:-66629874 Msa0515400:intron
GGTATCTTTGGAACTTCTGG+AGG 0.587369 3_4:-66629705 Msa0515400:CDS
TCAGCTCTTGGTCTCAGGGA+AGG 0.594171 3_4:-66628390 Msa0515400:CDS
GCTCTTGGTCTCAGGGAAGG+AGG 0.614124 3_4:-66628387 Msa0515400:intron
GTTGATGATGAGCCTAACAC+TGG 0.618935 3_4:-66628444 Msa0515400:CDS
AATGAAACATCAGAAAACCT+AGG 0.623821 3_4:+66629966 None:intergenic
CCAAAGCCAAAGGTTGAAGA+CGG 0.625147 3_4:-66629726 Msa0515400:CDS
ATAACATTGAACAACACTAG+TGG 0.664923 3_4:+66627992 None:intergenic
TCAGCTCAACATTGAGACTG+GGG 0.690397 3_4:-66628035 Msa0515400:CDS
ATTGGAGCTCTAGGTGACCG+TGG 0.710208 3_4:-66628474 Msa0515400:CDS
CATCATCAACAAATTTACCA+CGG 0.716251 3_4:+66628457 None:intergenic
GATGATGAGCCTAACACTGG+AGG 0.724745 3_4:-66628441 Msa0515400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATAATTTTTAATATCAT+TGG + chr3_4:66628869-66628888 None:intergenic 10.0%
!! CTATAAAAATTAAATGTTAA+AGG + chr3_4:66629004-66629023 None:intergenic 10.0%
!!! TTTACATGTAAAAAAATTTT+GGG - chr3_4:66629030-66629049 Msa0515400:intron 10.0%
!! TTGACAAATATTAATTAATT+AGG - chr3_4:66629186-66629205 Msa0515400:intron 10.0%
!! AATATTAATTAATTAGGATT+AGG - chr3_4:66629192-66629211 Msa0515400:intron 10.0%
!!! TTTGATTTTCAAAATTATTA+AGG - chr3_4:66629778-66629797 Msa0515400:intron 10.0%
!!! TACATAATTTTTAATATCAT+TGG + chr3_4:66628869-66628888 None:intergenic 10.0%
!! CTATAAAAATTAAATGTTAA+AGG + chr3_4:66629004-66629023 None:intergenic 10.0%
!!! TTTACATGTAAAAAAATTTT+GGG - chr3_4:66629030-66629049 Msa0515400:intron 10.0%
!! TTGACAAATATTAATTAATT+AGG - chr3_4:66629186-66629205 Msa0515400:intron 10.0%
!! AATATTAATTAATTAGGATT+AGG - chr3_4:66629192-66629211 Msa0515400:intron 10.0%
!!! TTTGATTTTCAAAATTATTA+AGG - chr3_4:66629778-66629797 Msa0515400:intron 10.0%
!!! CAATTTTAGTAATTTTATTG+AGG - chr3_4:66628907-66628926 Msa0515400:intron 15.0%
!!! CTTTACATGTAAAAAAATTT+TGG - chr3_4:66629029-66629048 Msa0515400:intron 15.0%
!!! AAAAAATTTTGGGAAAAATT+TGG - chr3_4:66629040-66629059 Msa0515400:intron 15.0%
!! TATATCATGCAAATTAAAAA+GGG - chr3_4:66629329-66629348 Msa0515400:intron 15.0%
!!! ATTTTCAAAATTATTAAGGT+TGG - chr3_4:66629782-66629801 Msa0515400:intron 15.0%
!!! CAATTTTAGTAATTTTATTG+AGG - chr3_4:66628907-66628926 Msa0515400:intron 15.0%
!!! CTTTACATGTAAAAAAATTT+TGG - chr3_4:66629029-66629048 Msa0515400:intron 15.0%
!!! AAAAAATTTTGGGAAAAATT+TGG - chr3_4:66629040-66629059 Msa0515400:intron 15.0%
!! TATATCATGCAAATTAAAAA+GGG - chr3_4:66629329-66629348 Msa0515400:intron 15.0%
!!! ATTTTCAAAATTATTAAGGT+TGG - chr3_4:66629782-66629801 Msa0515400:intron 15.0%
!! ATAGACTTAAGTAATAGTTT+AGG + chr3_4:66628593-66628612 None:intergenic 20.0%
!!! TAAAGAACATTTTGAAGTTT+TGG + chr3_4:66629244-66629263 None:intergenic 20.0%
!! GTATATCATGCAAATTAAAA+AGG - chr3_4:66629328-66629347 Msa0515400:intron 20.0%
!!! AATTTATTTTTGTGCATGTT+AGG - chr3_4:66629821-66629840 Msa0515400:intron 20.0%
!! ATAGACTTAAGTAATAGTTT+AGG + chr3_4:66628593-66628612 None:intergenic 20.0%
!!! TAAAGAACATTTTGAAGTTT+TGG + chr3_4:66629244-66629263 None:intergenic 20.0%
!! GTATATCATGCAAATTAAAA+AGG - chr3_4:66629328-66629347 Msa0515400:intron 20.0%
!!! AATTTATTTTTGTGCATGTT+AGG - chr3_4:66629821-66629840 Msa0515400:intron 20.0%
! AATTACAGTGTCAAAGATTA+AGG - chr3_4:66628001-66628020 Msa0515400:CDS 25.0%
! GAAAAACACTTAGAATTTGA+AGG + chr3_4:66628060-66628079 None:intergenic 25.0%
! ATAATCTCGCAAATGTTTAT+AGG + chr3_4:66628524-66628543 None:intergenic 25.0%
! AAAAAAATGAACCTGTCAAA+AGG - chr3_4:66628786-66628805 Msa0515400:intron 25.0%
! AAAAAATGAACCTGTCAAAA+GGG - chr3_4:66628787-66628806 Msa0515400:intron 25.0%
!! GCTTTTCTTTAACTAACTTT+TGG + chr3_4:66629301-66629320 None:intergenic 25.0%
! AATTCTAGCACAATTGAATT+TGG - chr3_4:66629422-66629441 Msa0515400:intron 25.0%
! AGGTGAAAATGATGAAAAAT+AGG + chr3_4:66629485-66629504 None:intergenic 25.0%
! AACAAACAATTCATTGGATT+TGG + chr3_4:66629864-66629883 None:intergenic 25.0%
! AAATCCAATGAATTGTTTGT+TGG - chr3_4:66629863-66629882 Msa0515400:intron 25.0%
! TTGATTGGAGAAATTATTAC+TGG - chr3_4:66629917-66629936 Msa0515400:CDS 25.0%
! AATTACAGTGTCAAAGATTA+AGG - chr3_4:66628001-66628020 Msa0515400:CDS 25.0%
! GAAAAACACTTAGAATTTGA+AGG + chr3_4:66628060-66628079 None:intergenic 25.0%
! ATAATCTCGCAAATGTTTAT+AGG + chr3_4:66628524-66628543 None:intergenic 25.0%
! AAAAAAATGAACCTGTCAAA+AGG - chr3_4:66628786-66628805 Msa0515400:intron 25.0%
! AAAAAATGAACCTGTCAAAA+GGG - chr3_4:66628787-66628806 Msa0515400:intron 25.0%
!! GCTTTTCTTTAACTAACTTT+TGG + chr3_4:66629301-66629320 None:intergenic 25.0%
! AATTCTAGCACAATTGAATT+TGG - chr3_4:66629422-66629441 Msa0515400:intron 25.0%
! AGGTGAAAATGATGAAAAAT+AGG + chr3_4:66629485-66629504 None:intergenic 25.0%
! AACAAACAATTCATTGGATT+TGG + chr3_4:66629864-66629883 None:intergenic 25.0%
! AAATCCAATGAATTGTTTGT+TGG - chr3_4:66629863-66629882 Msa0515400:intron 25.0%
! TTGATTGGAGAAATTATTAC+TGG - chr3_4:66629917-66629936 Msa0515400:CDS 25.0%
AATGAAACATCAGAAAACCT+AGG + chr3_4:66628027-66628046 None:intergenic 30.0%
ACTTAGAATTTGAAGGAAGT+GGG + chr3_4:66628053-66628072 None:intergenic 30.0%
!! AAAAAAGTACTACCTTAGCA+GGG + chr3_4:66628131-66628150 None:intergenic 30.0%
!! AAAAAAAGTACTACCTTAGC+AGG + chr3_4:66628132-66628151 None:intergenic 30.0%
GTAAAGTGAATATATCAGTG+AGG + chr3_4:66628387-66628406 None:intergenic 30.0%
!! GAAAATAAGACAAGTTGGTA+TGG + chr3_4:66628409-66628428 None:intergenic 30.0%
GCAATGAAAATAAGACAAGT+TGG + chr3_4:66628414-66628433 None:intergenic 30.0%
AAAAATGAACCTGTCAAAAG+GGG - chr3_4:66628788-66628807 Msa0515400:intron 30.0%
! CAACTCTAACACTTGTTAAT+TGG - chr3_4:66628957-66628976 Msa0515400:intron 30.0%
! ATATTAGGTGAAGCATTAAC+TGG - chr3_4:66629393-66629412 Msa0515400:intron 30.0%
ATGATGAAAAATAGGAGAAG+AGG + chr3_4:66629477-66629496 None:intergenic 30.0%
CATCATCAACAAATTTACCA+CGG + chr3_4:66629536-66629555 None:intergenic 30.0%
AGTCTTTATTAATGACCAGA+GGG + chr3_4:66629687-66629706 None:intergenic 30.0%
TAGTCTTTATTAATGACCAG+AGG + chr3_4:66629688-66629707 None:intergenic 30.0%
TGTTTATAATAGTGACTAGC+AGG - chr3_4:66629747-66629766 Msa0515400:intron 30.0%
!! GATTTGGTGAATCCAAATAA+AGG + chr3_4:66629848-66629867 None:intergenic 30.0%
TCTTCCAACAAACAATTCAT+TGG + chr3_4:66629870-66629889 None:intergenic 30.0%
! TGAATTGTTTGTTGGAAGAT+TGG - chr3_4:66629871-66629890 Msa0515400:intron 30.0%
!!! GGTTTTGTTTTCTCTTTGAT+TGG - chr3_4:66629902-66629921 Msa0515400:CDS 30.0%
TGGAGAAATTATTACTGGTA+AGG - chr3_4:66629922-66629941 Msa0515400:CDS 30.0%
GGAGAAATTATTACTGGTAA+GGG - chr3_4:66629923-66629942 Msa0515400:CDS 30.0%
GTGGTTCAATTTCAGTAATT+GGG + chr3_4:66629982-66630001 None:intergenic 30.0%
AGTGGTTCAATTTCAGTAAT+TGG + chr3_4:66629983-66630002 None:intergenic 30.0%
ATAACATTGAACAACACTAG+TGG + chr3_4:66630001-66630020 None:intergenic 30.0%
AATGAAACATCAGAAAACCT+AGG + chr3_4:66628027-66628046 None:intergenic 30.0%
ACTTAGAATTTGAAGGAAGT+GGG + chr3_4:66628053-66628072 None:intergenic 30.0%
!! AAAAAAGTACTACCTTAGCA+GGG + chr3_4:66628131-66628150 None:intergenic 30.0%
!! AAAAAAAGTACTACCTTAGC+AGG + chr3_4:66628132-66628151 None:intergenic 30.0%
GTAAAGTGAATATATCAGTG+AGG + chr3_4:66628387-66628406 None:intergenic 30.0%
!! GAAAATAAGACAAGTTGGTA+TGG + chr3_4:66628409-66628428 None:intergenic 30.0%
GCAATGAAAATAAGACAAGT+TGG + chr3_4:66628414-66628433 None:intergenic 30.0%
AAAAATGAACCTGTCAAAAG+GGG - chr3_4:66628788-66628807 Msa0515400:intron 30.0%
! CAACTCTAACACTTGTTAAT+TGG - chr3_4:66628957-66628976 Msa0515400:intron 30.0%
! ATATTAGGTGAAGCATTAAC+TGG - chr3_4:66629393-66629412 Msa0515400:intron 30.0%
ATGATGAAAAATAGGAGAAG+AGG + chr3_4:66629477-66629496 None:intergenic 30.0%
CATCATCAACAAATTTACCA+CGG + chr3_4:66629536-66629555 None:intergenic 30.0%
AGTCTTTATTAATGACCAGA+GGG + chr3_4:66629687-66629706 None:intergenic 30.0%
TAGTCTTTATTAATGACCAG+AGG + chr3_4:66629688-66629707 None:intergenic 30.0%
TGTTTATAATAGTGACTAGC+AGG - chr3_4:66629747-66629766 Msa0515400:intron 30.0%
!! GATTTGGTGAATCCAAATAA+AGG + chr3_4:66629848-66629867 None:intergenic 30.0%
TCTTCCAACAAACAATTCAT+TGG + chr3_4:66629870-66629889 None:intergenic 30.0%
! TGAATTGTTTGTTGGAAGAT+TGG - chr3_4:66629871-66629890 Msa0515400:intron 30.0%
!!! GGTTTTGTTTTCTCTTTGAT+TGG - chr3_4:66629902-66629921 Msa0515400:CDS 30.0%
TGGAGAAATTATTACTGGTA+AGG - chr3_4:66629922-66629941 Msa0515400:CDS 30.0%
GGAGAAATTATTACTGGTAA+GGG - chr3_4:66629923-66629942 Msa0515400:CDS 30.0%
GTGGTTCAATTTCAGTAATT+GGG + chr3_4:66629982-66630001 None:intergenic 30.0%
AGTGGTTCAATTTCAGTAAT+TGG + chr3_4:66629983-66630002 None:intergenic 30.0%
ATAACATTGAACAACACTAG+TGG + chr3_4:66630001-66630020 None:intergenic 30.0%
AGGGTCTTTCTTCAAATCAA+CGG + chr3_4:66627974-66627993 None:intergenic 35.0%
GACACTGTAATTGAAGCAAA+GGG + chr3_4:66627993-66628012 None:intergenic 35.0%
TGACACTGTAATTGAAGCAA+AGG + chr3_4:66627994-66628013 None:intergenic 35.0%
CACTTAGAATTTGAAGGAAG+TGG + chr3_4:66628054-66628073 None:intergenic 35.0%
ATCACGTACATTCACTACTT+TGG - chr3_4:66628080-66628099 Msa0515400:CDS 35.0%
!! AAAAAGTACTACCTTAGCAG+GGG + chr3_4:66628130-66628149 None:intergenic 35.0%
!! ATTTGAGAGCACTATGAATC+TGG - chr3_4:66628203-66628222 Msa0515400:intron 35.0%
TGTAAAAAAGCCAAAGCCAA+AGG - chr3_4:66628254-66628273 Msa0515400:intron 35.0%
AAGCAGAATGAACTCTTTGT+TGG - chr3_4:66628321-66628340 Msa0515400:intron 35.0%
ACAAGTGTTAGAGTTGCAAA+TGG + chr3_4:66628953-66628972 None:intergenic 35.0%
TTGAGAACATTTGACAGCAT+GGG + chr3_4:66629085-66629104 None:intergenic 35.0%
TTTGAGAACATTTGACAGCA+TGG + chr3_4:66629086-66629105 None:intergenic 35.0%
CATAACAATGCAAGTCTTCA+TGG + chr3_4:66629122-66629141 None:intergenic 35.0%
AGGGTAGATAAGTTAAGTCA+CGG - chr3_4:66629348-66629367 Msa0515400:intron 35.0%
CATTTGCAGGCATCAATATT+AGG - chr3_4:66629378-66629397 Msa0515400:intron 35.0%
GCACAATTGAATTTGGAAAC+TGG - chr3_4:66629429-66629448 Msa0515400:intron 35.0%
! TTCATCATTTTCACCTTGCT+AGG - chr3_4:66629489-66629508 Msa0515400:intron 35.0%
AAAGGATTTAGATCAGCTCT+TGG - chr3_4:66629588-66629607 Msa0515400:intron 35.0%
! TTTCAAGTAAATACACCCTC+TGG - chr3_4:66629669-66629688 Msa0515400:CDS 35.0%
TGCATGTTAGGTCCTTTATT+TGG - chr3_4:66629833-66629852 Msa0515400:intron 35.0%
AGGGTCTTTCTTCAAATCAA+CGG + chr3_4:66627974-66627993 None:intergenic 35.0%
GACACTGTAATTGAAGCAAA+GGG + chr3_4:66627993-66628012 None:intergenic 35.0%
TGACACTGTAATTGAAGCAA+AGG + chr3_4:66627994-66628013 None:intergenic 35.0%
CACTTAGAATTTGAAGGAAG+TGG + chr3_4:66628054-66628073 None:intergenic 35.0%
ATCACGTACATTCACTACTT+TGG - chr3_4:66628080-66628099 Msa0515400:CDS 35.0%
!! AAAAAGTACTACCTTAGCAG+GGG + chr3_4:66628130-66628149 None:intergenic 35.0%
!! ATTTGAGAGCACTATGAATC+TGG - chr3_4:66628203-66628222 Msa0515400:intron 35.0%
TGTAAAAAAGCCAAAGCCAA+AGG - chr3_4:66628254-66628273 Msa0515400:intron 35.0%
AAGCAGAATGAACTCTTTGT+TGG - chr3_4:66628321-66628340 Msa0515400:intron 35.0%
ACAAGTGTTAGAGTTGCAAA+TGG + chr3_4:66628953-66628972 None:intergenic 35.0%
TTGAGAACATTTGACAGCAT+GGG + chr3_4:66629085-66629104 None:intergenic 35.0%
TTTGAGAACATTTGACAGCA+TGG + chr3_4:66629086-66629105 None:intergenic 35.0%
CATAACAATGCAAGTCTTCA+TGG + chr3_4:66629122-66629141 None:intergenic 35.0%
AGGGTAGATAAGTTAAGTCA+CGG - chr3_4:66629348-66629367 Msa0515400:intron 35.0%
CATTTGCAGGCATCAATATT+AGG - chr3_4:66629378-66629397 Msa0515400:intron 35.0%
GCACAATTGAATTTGGAAAC+TGG - chr3_4:66629429-66629448 Msa0515400:intron 35.0%
! TTCATCATTTTCACCTTGCT+AGG - chr3_4:66629489-66629508 Msa0515400:intron 35.0%
AAAGGATTTAGATCAGCTCT+TGG - chr3_4:66629588-66629607 Msa0515400:intron 35.0%
! TTTCAAGTAAATACACCCTC+TGG - chr3_4:66629669-66629688 Msa0515400:CDS 35.0%
TGCATGTTAGGTCCTTTATT+TGG - chr3_4:66629833-66629852 Msa0515400:intron 35.0%
AGTGTCAAAGATTAAGGCCT+AGG - chr3_4:66628007-66628026 Msa0515400:CDS 40.0%
AAGATACCGTCTTCAACCTT+TGG + chr3_4:66628273-66628292 None:intergenic 40.0%
AAGGTTGAAGACGGTATCTT+TGG - chr3_4:66628273-66628292 Msa0515400:intron 40.0%
! TTTGGAACTTCTGGAGGATT+TGG - chr3_4:66628291-66628310 Msa0515400:intron 40.0%
! TGGATCCTTGACTAAGGTTT+TGG - chr3_4:66628811-66628830 Msa0515400:intron 40.0%
! GTTAGAGTTGCAAATGGACT+TGG + chr3_4:66628947-66628966 None:intergenic 40.0%
ATGGGCGGATCTAATATGTA+TGG + chr3_4:66629067-66629086 None:intergenic 40.0%
! TCACGGATTGTTTCATTTGC+AGG - chr3_4:66629365-66629384 Msa0515400:intron 40.0%
AGAGGCTCAGCTTCATAAAT+TGG + chr3_4:66629459-66629478 None:intergenic 40.0%
! GATCTAAATCCTTTTCCTGG+AGG + chr3_4:66629582-66629601 None:intergenic 40.0%
! GCTGATCTAAATCCTTTTCC+TGG + chr3_4:66629585-66629604 None:intergenic 40.0%
! TGTTGGAAGATTGGCTCAAT+TGG - chr3_4:66629880-66629899 Msa0515400:CDS 40.0%
! GTTGGAAGATTGGCTCAATT+GGG - chr3_4:66629881-66629900 Msa0515400:CDS 40.0%
!! TTCATTGCTGCTTTGAATCC+TGG - chr3_4:66630028-66630047 Msa0515400:CDS 40.0%
AGTGTCAAAGATTAAGGCCT+AGG - chr3_4:66628007-66628026 Msa0515400:CDS 40.0%
AAGATACCGTCTTCAACCTT+TGG + chr3_4:66628273-66628292 None:intergenic 40.0%
AAGGTTGAAGACGGTATCTT+TGG - chr3_4:66628273-66628292 Msa0515400:intron 40.0%
! TTTGGAACTTCTGGAGGATT+TGG - chr3_4:66628291-66628310 Msa0515400:intron 40.0%
! TGGATCCTTGACTAAGGTTT+TGG - chr3_4:66628811-66628830 Msa0515400:intron 40.0%
! GTTAGAGTTGCAAATGGACT+TGG + chr3_4:66628947-66628966 None:intergenic 40.0%
ATGGGCGGATCTAATATGTA+TGG + chr3_4:66629067-66629086 None:intergenic 40.0%
! TCACGGATTGTTTCATTTGC+AGG - chr3_4:66629365-66629384 Msa0515400:intron 40.0%
AGAGGCTCAGCTTCATAAAT+TGG + chr3_4:66629459-66629478 None:intergenic 40.0%
! GATCTAAATCCTTTTCCTGG+AGG + chr3_4:66629582-66629601 None:intergenic 40.0%
! GCTGATCTAAATCCTTTTCC+TGG + chr3_4:66629585-66629604 None:intergenic 40.0%
! TGTTGGAAGATTGGCTCAAT+TGG - chr3_4:66629880-66629899 Msa0515400:CDS 40.0%
! GTTGGAAGATTGGCTCAATT+GGG - chr3_4:66629881-66629900 Msa0515400:CDS 40.0%
!! TTCATTGCTGCTTTGAATCC+TGG - chr3_4:66630028-66630047 Msa0515400:CDS 40.0%
AAAGACTAAAGCCCCTGCTA+AGG - chr3_4:66628116-66628135 Msa0515400:CDS 45.0%
CCAAAGCCAAAGGTTGAAGA+CGG - chr3_4:66628264-66628283 Msa0515400:intron 45.0%
!! GACGGTATCTTTGGAACTTC+TGG - chr3_4:66628282-66628301 Msa0515400:intron 45.0%
!! GGTATCTTTGGAACTTCTGG+AGG - chr3_4:66628285-66628304 Msa0515400:intron 45.0%
! GTTGGTCGTGTTGCTATGAT+CGG - chr3_4:66628339-66628358 Msa0515400:intron 45.0%
AATGAACCTGTCAAAAGGGG+TGG - chr3_4:66628791-66628810 Msa0515400:intron 45.0%
CCACACCAAAACCTTAGTCA+AGG + chr3_4:66628819-66628838 None:intergenic 45.0%
!! CCTTGACTAAGGTTTTGGTG+TGG - chr3_4:66628816-66628835 Msa0515400:intron 45.0%
AGAACATTTGACAGCATGGG+CGG + chr3_4:66629082-66629101 None:intergenic 45.0%
! GGTGAAGCATTAACTGGCAA+AGG - chr3_4:66629399-66629418 Msa0515400:intron 45.0%
TTCACCTTGCTAGGAGCAAT+TGG - chr3_4:66629498-66629517 Msa0515400:intron 45.0%
!! GTTGATGATGAGCCTAACAC+TGG - chr3_4:66629546-66629565 Msa0515400:intron 45.0%
GGAATAACTCCTCCAGTGTT+AGG + chr3_4:66629561-66629580 None:intergenic 45.0%
GGAGTTATTCCTCCAGGAAA+AGG - chr3_4:66629570-66629589 Msa0515400:intron 45.0%
TTAGATCAGCTCTTGGTCTC+AGG - chr3_4:66629595-66629614 Msa0515400:intron 45.0%
TAGATCAGCTCTTGGTCTCA+GGG - chr3_4:66629596-66629615 Msa0515400:intron 45.0%
CTCAGCTCAACATTGAGACT+GGG - chr3_4:66629954-66629973 Msa0515400:CDS 45.0%
TCAGCTCAACATTGAGACTG+GGG - chr3_4:66629955-66629974 Msa0515400:CDS 45.0%
!! GTTACAAAAGTGCCAGTTCC+AGG + chr3_4:66630049-66630068 None:intergenic 45.0%
AAAGACTAAAGCCCCTGCTA+AGG - chr3_4:66628116-66628135 Msa0515400:CDS 45.0%
CCAAAGCCAAAGGTTGAAGA+CGG - chr3_4:66628264-66628283 Msa0515400:intron 45.0%
!! GACGGTATCTTTGGAACTTC+TGG - chr3_4:66628282-66628301 Msa0515400:intron 45.0%
!! GGTATCTTTGGAACTTCTGG+AGG - chr3_4:66628285-66628304 Msa0515400:intron 45.0%
! GTTGGTCGTGTTGCTATGAT+CGG - chr3_4:66628339-66628358 Msa0515400:intron 45.0%
AATGAACCTGTCAAAAGGGG+TGG - chr3_4:66628791-66628810 Msa0515400:intron 45.0%
CCACACCAAAACCTTAGTCA+AGG + chr3_4:66628819-66628838 None:intergenic 45.0%
!! CCTTGACTAAGGTTTTGGTG+TGG - chr3_4:66628816-66628835 Msa0515400:intron 45.0%
AGAACATTTGACAGCATGGG+CGG + chr3_4:66629082-66629101 None:intergenic 45.0%
! GGTGAAGCATTAACTGGCAA+AGG - chr3_4:66629399-66629418 Msa0515400:intron 45.0%
TTCACCTTGCTAGGAGCAAT+TGG - chr3_4:66629498-66629517 Msa0515400:intron 45.0%
!! GTTGATGATGAGCCTAACAC+TGG - chr3_4:66629546-66629565 Msa0515400:intron 45.0%
GGAATAACTCCTCCAGTGTT+AGG + chr3_4:66629561-66629580 None:intergenic 45.0%
GGAGTTATTCCTCCAGGAAA+AGG - chr3_4:66629570-66629589 Msa0515400:intron 45.0%
TTAGATCAGCTCTTGGTCTC+AGG - chr3_4:66629595-66629614 Msa0515400:intron 45.0%
TAGATCAGCTCTTGGTCTCA+GGG - chr3_4:66629596-66629615 Msa0515400:intron 45.0%
CTCAGCTCAACATTGAGACT+GGG - chr3_4:66629954-66629973 Msa0515400:CDS 45.0%
TCAGCTCAACATTGAGACTG+GGG - chr3_4:66629955-66629974 Msa0515400:CDS 45.0%
!! GTTACAAAAGTGCCAGTTCC+AGG + chr3_4:66630049-66630068 None:intergenic 45.0%
!! ATAAAATATATATATATTTC+AGG - chr3_4:66628230-66628249 Msa0515400:intron 5.0%
!! ATAAAATATATATATATTTC+AGG - chr3_4:66628230-66628249 Msa0515400:intron 5.0%
! CCGTCTTCAACCTTTGGCTT+TGG + chr3_4:66628267-66628286 None:intergenic 50.0%
! AAGGATCCACCCCTTTTGAC+AGG + chr3_4:66628800-66628819 None:intergenic 50.0%
AAGGGGTGGATCCTTGACTA+AGG - chr3_4:66628805-66628824 Msa0515400:intron 50.0%
AGCTCCAATTGCTCCTAGCA+AGG + chr3_4:66629505-66629524 None:intergenic 50.0%
CTAGGAGCAATTGGAGCTCT+AGG - chr3_4:66629507-66629526 Msa0515400:intron 50.0%
GATGATGAGCCTAACACTGG+AGG - chr3_4:66629549-66629568 Msa0515400:intron 50.0%
ACTGGAGGAGTTATTCCTCC+AGG - chr3_4:66629564-66629583 Msa0515400:intron 50.0%
GCTCAGCTCAACATTGAGAC+TGG - chr3_4:66629953-66629972 Msa0515400:CDS 50.0%
! GCTGCTTTGAATCCTGGAAC+TGG - chr3_4:66630034-66630053 Msa0515400:CDS 50.0%
! CCGTCTTCAACCTTTGGCTT+TGG + chr3_4:66628267-66628286 None:intergenic 50.0%
! AAGGATCCACCCCTTTTGAC+AGG + chr3_4:66628800-66628819 None:intergenic 50.0%
AAGGGGTGGATCCTTGACTA+AGG - chr3_4:66628805-66628824 Msa0515400:intron 50.0%
AGCTCCAATTGCTCCTAGCA+AGG + chr3_4:66629505-66629524 None:intergenic 50.0%
CTAGGAGCAATTGGAGCTCT+AGG - chr3_4:66629507-66629526 Msa0515400:intron 50.0%
GATGATGAGCCTAACACTGG+AGG - chr3_4:66629549-66629568 Msa0515400:intron 50.0%
ACTGGAGGAGTTATTCCTCC+AGG - chr3_4:66629564-66629583 Msa0515400:intron 50.0%
GCTCAGCTCAACATTGAGAC+TGG - chr3_4:66629953-66629972 Msa0515400:CDS 50.0%
! GCTGCTTTGAATCCTGGAAC+TGG - chr3_4:66630034-66630053 Msa0515400:CDS 50.0%
!! ATTGGAGCTCTAGGTGACCG+TGG - chr3_4:66629516-66629535 Msa0515400:intron 55.0%
TCAGCTCTTGGTCTCAGGGA+AGG - chr3_4:66629600-66629619 Msa0515400:intron 55.0%
!! ATTGGAGCTCTAGGTGACCG+TGG - chr3_4:66629516-66629535 Msa0515400:intron 55.0%
TCAGCTCTTGGTCTCAGGGA+AGG - chr3_4:66629600-66629619 Msa0515400:intron 55.0%
GCTCTTGGTCTCAGGGAAGG+AGG - chr3_4:66629603-66629622 Msa0515400:intron 60.0%
GCTCTTGGTCTCAGGGAAGG+AGG - chr3_4:66629603-66629622 Msa0515400:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66627925 66630087 66627925 ID=Msa0515400;Name=Msa0515400
chr3_4 mRNA 66627925 66630087 66627925 ID=Msa0515400-mRNA-1;Parent=Msa0515400;Name=Msa0515400-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|4|0|270
chr3_4 exon 66629875 66630087 66629875 ID=Msa0515400-mRNA-1:exon:17201;Parent=Msa0515400-mRNA-1
chr3_4 exon 66629644 66629760 66629644 ID=Msa0515400-mRNA-1:exon:17200;Parent=Msa0515400-mRNA-1
chr3_4 exon 66628388 66628625 66628388 ID=Msa0515400-mRNA-1:exon:17199;Parent=Msa0515400-mRNA-1
chr3_4 exon 66627925 66628169 66627925 ID=Msa0515400-mRNA-1:exon:17198;Parent=Msa0515400-mRNA-1
chr3_4 CDS 66629875 66630087 66629875 ID=Msa0515400-mRNA-1:cds;Parent=Msa0515400-mRNA-1
chr3_4 CDS 66629644 66629760 66629644 ID=Msa0515400-mRNA-1:cds;Parent=Msa0515400-mRNA-1
chr3_4 CDS 66628388 66628625 66628388 ID=Msa0515400-mRNA-1:cds;Parent=Msa0515400-mRNA-1
chr3_4 CDS 66627925 66628169 66627925 ID=Msa0515400-mRNA-1:cds;Parent=Msa0515400-mRNA-1
Gene Sequence

>Msa0515400

ATGGCTCAAACTATGTTGCTCATGTCTAGTGTCTCTAGTACTTATTCCGTTGATTTGAAGAAAGACCCTTTGCTTCAATTACAGTGTCAAAGATTAAGGCCTAGGTTTTCTGATGTTTCATTCAACCCACTTCCTTCAAATTCTAAGTGTTTTTCATCACGTACATTCACTACTTTGGCTCTATTCAAATCAAAGACTAAAGCCCCTGCTAAGGTTGTAAAAAAGCCAAAGCCAAAGGTTGAAGACGGTATCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAATGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGCATCAATATTAGGTGAAGCATTAACTGGCAAAGGAATTCTAGCACAATTGAATTTGGAAACTGGAATTCCAATTTATGAAGCTGAGCCTCTTCTCCTATTTTTCATCATTTTCACCTTGCTAGGAGCAATTGGAGCTCTAGGTGACCGTGGTAAATTTGTTGATGATGAGCCTAACACTGGAGGAGTTATTCCTCCAGGAAAAGGATTTAGATCAGCTCTTGGTCTCAGGGAAGGAGGTCCTTTATTTGGATTCACCAAATCCAATGAATTGTTTGTTGGAAGATTGGCTCAATTGGGTTTTGTTTTCTCTTTGATTGGAGAAATTATTACTGGTAAGGGAGCTCTAGCTCAGCTCAACATTGAGACTGGGGTCCCAATTACTGAAATTGAACCACTAGTGTTGTTCAATGTTATTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGCACTTTTGTAACAGATGAAGAAGAAGATTAG

Protein sequence

>Msa0515400

MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDDEPNTGGVIPPGKGFRSALGLREGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLNIETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDEEED*