AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460950 MtrunA17_Chr3g0110261 99.157 356 3 0 1 356 1 356 0.0 728
Msa0460950 MtrunA17_Chr6g0479141 89.326 356 38 0 1 356 1 356 0.0 676
Msa0460950 MtrunA17_Chr5g0434471 87.042 355 46 0 2 356 3 357 0.0 657
Msa0460950 MtrunA17_Chr2g0287211 79.213 356 74 0 1 356 57 412 0.0 612
Msa0460950 MtrunA17_Chr2g0287181 75.562 356 87 0 1 356 57 412 0.0 590
Msa0460950 MtrunA17_Chr8g0364341 69.091 55 17 0 252 306 9 63 8.68e-20 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460950 AT5G37600.1 89.326 356 38 0 1 356 1 356 0.0 679
Msa0460950 AT1G66200.1 88.764 356 40 0 1 356 1 356 0.0 677
Msa0460950 AT5G16570.1 90.169 356 35 0 1 356 1 356 0.0 676
Msa0460950 AT1G66200.3 86.575 365 40 1 1 356 1 365 0.0 669
Msa0460950 AT3G17820.1 85.552 353 51 0 1 353 1 353 0.0 644
Msa0460950 AT1G48470.1 81.065 338 64 0 16 353 16 353 0.0 598
Msa0460950 AT5G35630.3 76.966 356 82 0 1 356 59 414 0.0 596
Msa0460950 AT5G35630.2 76.966 356 82 0 1 356 59 414 0.0 596
Msa0460950 AT5G35630.1 76.966 356 82 0 1 356 59 414 0.0 596
Msa0460950 AT1G66200.2 88.889 252 28 0 1 252 1 252 5.44e-174 484
Msa0460950 AT5G16570.2 89.540 239 25 0 1 239 1 239 8.90e-162 452

Find 144 sgRNAs with CRISPR-Local

Find 574 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCAAACCTTAATTGGTTT+TGG 0.177125 3_3:-58648703 None:intergenic
CTTTGACCCAAAACCAATTA+AGG 0.180257 3_3:+58648696 Msa0460950:CDS
TGGAAATAGCAAACCTTAAT+TGG 0.180907 3_3:-58648709 None:intergenic
ATGGGTTGCTCGTTACATTT+TGG 0.219815 3_3:+58648511 Msa0460950:CDS
ATATTGTTACCCCTTCTAAA+TGG 0.232525 3_3:-58647170 None:intergenic
CTGACATTAACACCTTCTTA+TGG 0.238098 3_3:+58649116 Msa0460950:CDS
TCTAAATGGGTCCTTGAAAA+TGG 0.243688 3_3:-58647156 None:intergenic
GTTGATTCCGCATTAGAATT+TGG 0.259893 3_3:+58649509 Msa0460950:three_prime_UTR
ACTACTATAAATTTAACTTA+TGG 0.272583 3_3:+58649759 Msa0460950:three_prime_UTR
TTGGATTTGTGTTATTGTTA+TGG 0.290371 3_3:+58649551 Msa0460950:three_prime_UTR
CCTTCTTCCCTCATGGTCAT+TGG 0.292176 3_3:-58649713 None:intergenic
CTGAAAGGAGAGACATGTTT+TGG 0.292470 3_3:-58645965 None:intergenic
ACTTTGTTTGTTTGAATTTG+AGG 0.300071 3_3:+58649579 Msa0460950:three_prime_UTR
TCAAATCGAATCGAATCTTT+AGG 0.306816 3_3:+58645898 Msa0460950:five_prime_UTR
TTCAAACTTAGTAAAATCTA+AGG 0.315824 3_3:-58645935 None:intergenic
ATGTCTCTTGTTGGTGGGAA+TGG 0.316733 3_3:-58647679 None:intergenic
TGAATTTGAGGCCTTGTTAT+AGG 0.320408 3_3:+58649591 Msa0460950:three_prime_UTR
TCTCTGCTGGTGATGAGATA+TGG 0.322815 3_3:+58648492 Msa0460950:CDS
AAGGAGCACATTGCTGCTTA+TGG 0.324475 3_3:+58649052 Msa0460950:CDS
TAATGCAAAACTAGGGTGAT+TGG 0.338203 3_3:+58648837 Msa0460950:intron
TGACATTAACACCTTCTTAT+GGG 0.364511 3_3:+58649117 Msa0460950:CDS
TGCATAATATATGCAAGGTC+TGG 0.368560 3_3:-58649829 None:intergenic
GGTCTTATTTATAGCCTAGT+TGG 0.377270 3_3:-58645810 None:intergenic
GGCAGCTGCATGTCTCTTGT+TGG 0.378014 3_3:-58647688 None:intergenic
GTGGGAATGGGCTCTCCAGC+TGG 0.380314 3_3:-58647666 None:intergenic
CATGTGTGTGTGGTGGCTTA+TGG 0.383641 3_3:-58649463 None:intergenic
AGAATCTAACCATATGTATT+CGG 0.402832 3_3:-58646033 None:intergenic
TATGACAGGATTGGTGGATC+TGG 0.408895 3_3:+58646758 Msa0460950:intron
TGTCTCTTGTTGGTGGGAAT+GGG 0.409298 3_3:-58647678 None:intergenic
TGAAAGCAATTGAGAAGCTT+GGG 0.410163 3_3:+58649020 Msa0460950:CDS
ATCATGGAAGTAACAACATA+TGG 0.411129 3_3:-58649415 None:intergenic
TCCAGGAGCTTGACCTGTGC+TGG 0.411245 3_3:-58646977 None:intergenic
TAGAAGGGGTAACAATATCT+TGG 0.417590 3_3:+58647175 Msa0460950:CDS
CTGGTGCTCACACAAATTAC+AGG 0.417888 3_3:+58648867 Msa0460950:CDS
AAAGACATCAATTGGCCTCT+TGG 0.419531 3_3:+58647879 Msa0460950:CDS
CCCTCAGTTGGTATCTCTGC+TGG 0.420001 3_3:+58648479 Msa0460950:CDS
TTGAAAGCAATTGAGAAGCT+TGG 0.420009 3_3:+58649019 Msa0460950:CDS
GGCAACGAGCGTAGATTGAC+AGG 0.421220 3_3:+58649079 Msa0460950:CDS
TGTTGCAGAAAGACATCAAT+TGG 0.424542 3_3:+58647871 Msa0460950:CDS
ATTCCTGCCTTCTTCCCTCA+TGG 0.426313 3_3:-58649720 None:intergenic
CTCTGCTGGTGATGAGATAT+GGG 0.426324 3_3:+58648493 Msa0460950:CDS
AGCTGTGAAGGGTCAGTAAC+TGG 0.427269 3_3:-58646931 None:intergenic
TAGAGGATCACTGAGGTTGC+TGG 0.429246 3_3:+58648661 Msa0460950:intron
GCTGGTGCTGACAAGGCATT+TGG 0.430707 3_3:+58648236 Msa0460950:CDS
GCATAATATATGCAAGGTCT+GGG 0.444486 3_3:-58649828 None:intergenic
ATCAGGATGGCTGAAAATCT+TGG 0.445473 3_3:-58647709 None:intergenic
TATTGTTACCCCTTCTAAAT+GGG 0.446639 3_3:-58647169 None:intergenic
CAGGATTGGTGGATCTGGTT+TGG 0.448471 3_3:+58646763 Msa0460950:intron
CGGTGGTTTCGGAGAGGTCA+AGG 0.456062 3_3:-58645998 None:intergenic
GTGGATCTGGTTTGGACTTG+AGG 0.460278 3_3:+58646771 Msa0460950:CDS
GTCCTTGTGAGCTGCTCAAT+TGG 0.460817 3_3:-58649861 None:intergenic
GGCTTATGGTTTCCAGAGAA+TGG 0.461165 3_3:-58649449 None:intergenic
CCTCTTGGTTGGCCAGTTGG+TGG 0.462411 3_3:+58647894 Msa0460950:CDS
AAATCATCGCCGAATACATA+TGG 0.465828 3_3:+58646024 Msa0460950:CDS
AGCTGCATGTCTCTTGTTGG+TGG 0.467488 3_3:-58647685 None:intergenic
AATGGTGGTGTCTGCAATCA+TGG 0.470051 3_3:-58649431 None:intergenic
TCCAGCACAGGTCAAGCTCC+TGG 0.473336 3_3:+58646976 Msa0460950:CDS
TCTCATTATGACAGGATTGG+TGG 0.478120 3_3:+58646752 Msa0460950:intron
TTGCAGACACCACCATTCTC+TGG 0.481231 3_3:+58649437 Msa0460950:CDS
TGGCCTCTTGGTTGGCCAGT+TGG 0.482222 3_3:+58647891 Msa0460950:CDS
AACTATGATGGTTCCAGCAC+AGG 0.485647 3_3:+58646964 Msa0460950:CDS
GGTACTTCAGCAACAACATC+AGG 0.488296 3_3:-58647726 None:intergenic
TTATTTGCTTACCCATAAGA+AGG 0.490705 3_3:-58649128 None:intergenic
GGTCCTTGAAAATGGCTTGT+GGG 0.493819 3_3:-58647148 None:intergenic
TTCCACTTGGGAAGCTGTGA+AGG 0.498232 3_3:-58646943 None:intergenic
ACATCAATTGGCCTCTTGGT+TGG 0.505676 3_3:+58647883 Msa0460950:CDS
CCAATGACCATGAGGGAAGA+AGG 0.505889 3_3:+58649713 Msa0460950:three_prime_UTR
GAAGGGTCAGTAACTGGTCC+TGG 0.512141 3_3:-58646925 None:intergenic
GAATCAAATGAAAACGAAAA+CGG 0.513020 3_3:-58645869 None:intergenic
GCACCAGCACCACAATAGTA+TGG 0.514601 3_3:-58648221 None:intergenic
GGAAGGGACACAGAGAAAGC+AGG 0.514679 3_3:+58649349 Msa0460950:CDS
ATCAACATCAGTGGAATCAA+TGG 0.515689 3_3:+58648305 Msa0460950:CDS
CTTCCCAAGTGGAACTATGA+TGG 0.516245 3_3:+58646952 Msa0460950:CDS
GGAAAGGTTATTTCGAGGAT+AGG 0.519246 3_3:+58649371 Msa0460950:CDS
CACATTGCTGCTTATGGAGA+AGG 0.521068 3_3:+58649058 Msa0460950:CDS
TACAAAGCCTGTCTTTATGC+CGG 0.521155 3_3:+58648281 Msa0460950:CDS
ACCAAGTCTATGAGAGAAGA+TGG 0.523810 3_3:+58648980 Msa0460950:CDS
TAGAGAAGGTGAGGAAGACT+AGG 0.524386 3_3:+58645777 Msa0460950:five_prime_UTR
TTTCAAGGACCCATTTAGAA+GGG 0.527758 3_3:+58647160 Msa0460950:CDS
TTGTGAGCTGCTCAATTGGT+AGG 0.528433 3_3:-58649857 None:intergenic
GTTGATGCCGGCATAAAGAC+AGG 0.529739 3_3:-58648288 None:intergenic
GGACCATACTATTGTGGTGC+TGG 0.534606 3_3:+58648218 Msa0460950:CDS
AAAAGATTATAGAGAAGGTG+AGG 0.538212 3_3:+58645768 Msa0460950:five_prime_UTR
TATGGATCCATGTTAGATGA+TGG 0.538723 3_3:-58649397 None:intergenic
GCTGCATGTCTCTTGTTGGT+GGG 0.539293 3_3:-58647684 None:intergenic
GGTCCAGGAAAACCACCAAC+TGG 0.540153 3_3:-58647906 None:intergenic
TTCCAAGTTGGTCCCTCAGT+TGG 0.551503 3_3:+58648467 Msa0460950:CDS
CGTGGTGCGTCGATTAGAGT+TGG 0.552602 3_3:+58649328 Msa0460950:CDS
ATAACTTCACTATCTTCTCC+AGG 0.553474 3_3:-58646994 None:intergenic
GATCACTGAGGTTGCTGGTG+TGG 0.554625 3_3:+58648666 Msa0460950:CDS
GATTCCACTGATGTTGATGC+CGG 0.555187 3_3:-58648300 None:intergenic
AGCAGGGAAAGGTTATTTCG+AGG 0.555891 3_3:+58649366 Msa0460950:CDS
ATAGAGAAATGAGGCAGTGT+GGG 0.557804 3_3:-58645832 None:intergenic
AAGGTTATTTCGAGGATAGG+AGG 0.561130 3_3:+58649374 Msa0460950:CDS
TGACCATGAGGGAAGAAGGC+AGG 0.566416 3_3:+58649717 Msa0460950:three_prime_UTR
TGGACTTGAGGAGCAAAGCA+AGG 0.567464 3_3:+58646783 Msa0460950:CDS
GGGTCCTTGAAAATGGCTTG+TGG 0.569983 3_3:-58647149 None:intergenic
ACCATCTTCTCTCATAGACT+TGG 0.571470 3_3:-58648981 None:intergenic
GGAACCATCATAGTTCCACT+TGG 0.572427 3_3:-58646956 None:intergenic
ATTGATGTCTTTCTGCAACA+AGG 0.574318 3_3:-58647868 None:intergenic
TTGTGGTGCTGGTGCTGACA+AGG 0.575827 3_3:+58648229 Msa0460950:CDS
TGTGATGCATACACTCCAGC+TGG 0.581505 3_3:+58647651 Msa0460950:CDS
TACCAACTGAGGGACCAACT+TGG 0.582203 3_3:-58648469 None:intergenic
TACCAATTGAGCAGCTCACA+AGG 0.583852 3_3:+58649859 Msa0460950:three_prime_UTR
GTGCGTCGATTAGAGTTGGA+AGG 0.584013 3_3:+58649332 Msa0460950:CDS
ATGTAGTGGGAATTCCAAGT+TGG 0.586154 3_3:+58648455 Msa0460950:intron
TAGGGTGATTGGAATGGTGC+TGG 0.586935 3_3:+58648848 Msa0460950:intron
TTCAAGGACCCATTTAGAAG+GGG 0.592622 3_3:+58647161 Msa0460950:CDS
ATCAATGGTGAAGTGATGCC+TGG 0.592881 3_3:+58648320 Msa0460950:CDS
TACAATGCATAATATATGCA+AGG 0.595528 3_3:-58649834 None:intergenic
TCCACTTGGGAAGCTGTGAA+GGG 0.596916 3_3:-58646942 None:intergenic
GACACAGAGAAAGCAGGGAA+AGG 0.598045 3_3:+58649355 Msa0460950:CDS
CAATAGGGACCATACTATTG+TGG 0.601480 3_3:+58648212 Msa0460950:intron
ACCCTTCACAGCTTCCCAAG+TGG 0.605168 3_3:+58646941 Msa0460950:CDS
TAAGTCCAACTTACTTGACC+AGG 0.608274 3_3:-58648338 None:intergenic
GGACTTGAGGAGCAAAGCAA+GGG 0.609551 3_3:+58646784 Msa0460950:CDS
CAACTCTAATCGACGCACCA+CGG 0.611739 3_3:-58649327 None:intergenic
CAAGGTTGATAAGATCTGAA+AGG 0.614499 3_3:-58645980 None:intergenic
TTCAATGCATGTGTGTGTGG+TGG 0.619576 3_3:-58649470 None:intergenic
TACTTCAATGCATGTGTGTG+TGG 0.619637 3_3:-58649473 None:intergenic
AATAGAGAAATGAGGCAGTG+TGG 0.625252 3_3:-58645833 None:intergenic
TAGGAGGCCATCATCTAACA+TGG 0.627480 3_3:+58649390 Msa0460950:CDS
CAAAACTAGGGTGATTGGAA+TGG 0.637511 3_3:+58648842 Msa0460950:intron
GAAGGGACACAGAGAAAGCA+GGG 0.638354 3_3:+58649350 Msa0460950:CDS
TGCGTCGATTAGAGTTGGAA+GGG 0.644595 3_3:+58649333 Msa0460950:CDS
GAACCATCATAGTTCCACTT+GGG 0.652093 3_3:-58646955 None:intergenic
GAAATATGAAACCTATAACA+AGG 0.657961 3_3:-58649602 None:intergenic
ACAATGACCAAATTCTAATG+CGG 0.661789 3_3:-58649516 None:intergenic
TTGAAGGGTGTTGCAAACCG+TGG 0.663350 3_3:+58649310 Msa0460950:intron
TTATGGTTTCCAGAGAATGG+TGG 0.667248 3_3:-58649446 None:intergenic
ACCAGCAGAGATACCAACTG+AGG 0.670459 3_3:-58648480 None:intergenic
CCACCAACTGGCCAACCAAG+AGG 0.671238 3_3:-58647894 None:intergenic
TATGCCGGCATCAACATCAG+TGG 0.676060 3_3:+58648296 Msa0460950:CDS
CTTCAGCAACAACATCAGGA+TGG 0.677550 3_3:-58647722 None:intergenic
CATAATATATGCAAGGTCTG+GGG 0.677890 3_3:-58649827 None:intergenic
CCAGCAGAGATACCAACTGA+GGG 0.678315 3_3:-58648479 None:intergenic
TAGAGAAATGAGGCAGTGTG+GGG 0.678759 3_3:-58645831 None:intergenic
TTGTTGTGAATAGAGAAATG+AGG 0.680888 3_3:-58645841 None:intergenic
AATGTGAGTCAACAATGTCA+CGG 0.681181 3_3:-58648259 None:intergenic
GCAACGAGCGTAGATTGACA+GGG 0.702514 3_3:+58649080 Msa0460950:CDS
ATGTTGTTGCTGAAGTACCA+TGG 0.706598 3_3:+58647730 Msa0460950:CDS
GAAGCTTGGGAAGAAGCACA+AGG 0.711059 3_3:+58649033 Msa0460950:CDS
AAGTCTATGAGAGAAGATGG+TGG 0.739470 3_3:+58648983 Msa0460950:CDS
GTTCCAATAGAGGATCACTG+AGG 0.789699 3_3:+58648654 Msa0460950:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAAAAAAAAAATAATCA+TGG - chr3_3:58646248-58646267 None:intergenic 10.0%
!! AGAAAAAAAATTAATCAAAA+GGG - chr3_3:58646733-58646752 None:intergenic 10.0%
!!! TTGTTCTTTAATTTTTTTTT+TGG + chr3_3:58647084-58647103 Msa0460950:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG - chr3_3:58648059-58648078 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG - chr3_3:58648084-58648103 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG - chr3_3:58649674-58649693 None:intergenic 10.0%
!! GAATAAAAAAAAAATAATCA+TGG - chr3_3:58646248-58646267 None:intergenic 10.0%
!! AGAAAAAAAATTAATCAAAA+GGG - chr3_3:58646733-58646752 None:intergenic 10.0%
!!! TTGTTCTTTAATTTTTTTTT+TGG + chr3_3:58647084-58647103 Msa0460950:intron 10.0%
!!! TAAACAAATTTAAAACAATT+AGG - chr3_3:58648059-58648078 None:intergenic 10.0%
!! AAAAAAATAACATAAAACTA+TGG - chr3_3:58648084-58648103 None:intergenic 10.0%
!!! AATCAACAATAATTATTTTA+CGG - chr3_3:58649674-58649693 None:intergenic 10.0%
!!! ATAGATTTTTAAGTTGATTT+TGG + chr3_3:58646381-58646400 Msa0460950:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG + chr3_3:58646382-58646401 Msa0460950:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG + chr3_3:58646527-58646546 Msa0460950:intron 15.0%
!! GAAAAAAAATTAATCAAAAG+GGG - chr3_3:58646732-58646751 None:intergenic 15.0%
!! GAGAAAAAAAATTAATCAAA+AGG - chr3_3:58646734-58646753 None:intergenic 15.0%
!!! AAAATATAAATGGCTTTTTT+TGG + chr3_3:58646890-58646909 Msa0460950:intron 15.0%
!!! AAATATAAATGGCTTTTTTT+GGG + chr3_3:58646891-58646910 Msa0460950:intron 15.0%
!! ACAAAATCTTTACATAATTA+AGG - chr3_3:58647068-58647087 None:intergenic 15.0%
!!! TTTTTTTTTTTAACATATGC+TGG + chr3_3:58647209-58647228 Msa0460950:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG - chr3_3:58647280-58647299 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG - chr3_3:58647621-58647640 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG - chr3_3:58647622-58647641 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG + chr3_3:58647623-58647642 Msa0460950:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG - chr3_3:58648053-58648072 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG - chr3_3:58648054-58648073 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG + chr3_3:58648196-58648215 Msa0460950:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG + chr3_3:58648197-58648216 Msa0460950:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG - chr3_3:58648369-58648388 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG + chr3_3:58648442-58648461 Msa0460950:intron 15.0%
!!! TATTTTTTTAATGCAAAACT+AGG + chr3_3:58648829-58648848 Msa0460950:intron 15.0%
!!! ATTTTTTTAATGCAAAACTA+GGG + chr3_3:58648830-58648849 Msa0460950:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG + chr3_3:58648921-58648940 Msa0460950:intron 15.0%
!!! ACTACTATAAATTTAACTTA+TGG + chr3_3:58649759-58649778 Msa0460950:three_prime_UTR 15.0%
!!! ATAGATTTTTAAGTTGATTT+TGG + chr3_3:58646381-58646400 Msa0460950:intron 15.0%
!!! TAGATTTTTAAGTTGATTTT+GGG + chr3_3:58646382-58646401 Msa0460950:intron 15.0%
!!! TTTTTTGTTTGGAATAAAAT+TGG + chr3_3:58646527-58646546 Msa0460950:intron 15.0%
!! GAAAAAAAATTAATCAAAAG+GGG - chr3_3:58646732-58646751 None:intergenic 15.0%
!! GAGAAAAAAAATTAATCAAA+AGG - chr3_3:58646734-58646753 None:intergenic 15.0%
!!! AAAATATAAATGGCTTTTTT+TGG + chr3_3:58646890-58646909 Msa0460950:intron 15.0%
!!! AAATATAAATGGCTTTTTTT+GGG + chr3_3:58646891-58646910 Msa0460950:intron 15.0%
!! ACAAAATCTTTACATAATTA+AGG - chr3_3:58647068-58647087 None:intergenic 15.0%
!!! TTTTTTTTTTTAACATATGC+TGG + chr3_3:58647209-58647228 Msa0460950:intron 15.0%
!!! TAGTAATTTTGATACATTTA+AGG - chr3_3:58647280-58647299 None:intergenic 15.0%
!! ATTTAATTAAACACAAAAGA+GGG - chr3_3:58647621-58647640 None:intergenic 15.0%
!! AATTTAATTAAACACAAAAG+AGG - chr3_3:58647622-58647641 None:intergenic 15.0%
!!! TTTTGTGTTTAATTAAATTC+AGG + chr3_3:58647623-58647642 Msa0460950:intron 15.0%
!!! AATTTAAAACAATTAGGTAT+GGG - chr3_3:58648053-58648072 None:intergenic 15.0%
!!! AAATTTAAAACAATTAGGTA+TGG - chr3_3:58648054-58648073 None:intergenic 15.0%
!!! TATTTTATAATTTGCTCAAT+AGG + chr3_3:58648196-58648215 Msa0460950:intron 15.0%
!!! ATTTTATAATTTGCTCAATA+GGG + chr3_3:58648197-58648216 Msa0460950:intron 15.0%
!! TAGTAAATAATAATGCTAAA+GGG - chr3_3:58648369-58648388 None:intergenic 15.0%
!!! TATTGTTTTTTTAATGTAGT+GGG + chr3_3:58648442-58648461 Msa0460950:intron 15.0%
!!! TATTTTTTTAATGCAAAACT+AGG + chr3_3:58648829-58648848 Msa0460950:intron 15.0%
!!! ATTTTTTTAATGCAAAACTA+GGG + chr3_3:58648830-58648849 Msa0460950:intron 15.0%
!!! CTATAGTTGAATATTTTATA+TGG + chr3_3:58648921-58648940 Msa0460950:intron 15.0%
!!! ACTACTATAAATTTAACTTA+TGG + chr3_3:58649759-58649778 Msa0460950:three_prime_UTR 15.0%
!! TTCAAACTTAGTAAAATCTA+AGG - chr3_3:58645938-58645957 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG + chr3_3:58646323-58646342 Msa0460950:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG + chr3_3:58646516-58646535 Msa0460950:intron 20.0%
!!! TATTCTGAGTTTTACTTATT+TGG + chr3_3:58647108-58647127 Msa0460950:intron 20.0%
!!! ATTCTGAGTTTTACTTATTT+GGG + chr3_3:58647109-58647128 Msa0460950:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG + chr3_3:58647345-58647364 Msa0460950:intron 20.0%
!! GTAGTAAATAATAATGCTAA+AGG - chr3_3:58648370-58648389 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG + chr3_3:58648441-58648460 Msa0460950:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG - chr3_3:58648786-58648805 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG + chr3_3:58648927-58648946 Msa0460950:intron 20.0%
!! TTCAAACTTAGTAAAATCTA+AGG - chr3_3:58645938-58645957 None:intergenic 20.0%
!!! CTCTCTTTTTTTAGTTATTT+TGG + chr3_3:58646323-58646342 Msa0460950:intron 20.0%
!!! AATGACTTTGTTTTTTTGTT+TGG + chr3_3:58646516-58646535 Msa0460950:intron 20.0%
!!! TATTCTGAGTTTTACTTATT+TGG + chr3_3:58647108-58647127 Msa0460950:intron 20.0%
!!! ATTCTGAGTTTTACTTATTT+GGG + chr3_3:58647109-58647128 Msa0460950:intron 20.0%
!!! TTGTCTTTTGTTAATTAGTT+TGG + chr3_3:58647345-58647364 Msa0460950:intron 20.0%
!! GTAGTAAATAATAATGCTAA+AGG - chr3_3:58648370-58648389 None:intergenic 20.0%
!!! CTATTGTTTTTTTAATGTAG+TGG + chr3_3:58648441-58648460 Msa0460950:intron 20.0%
!! TATAAGACAAGTATATCAAT+TGG - chr3_3:58648786-58648805 None:intergenic 20.0%
!!! TTGAATATTTTATATGGTCA+TGG + chr3_3:58648927-58648946 Msa0460950:intron 20.0%
! GAATCAAATGAAAACGAAAA+CGG - chr3_3:58645872-58645891 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG - chr3_3:58646036-58646055 None:intergenic 25.0%
!!! GATGTTTTGTTCTGTTTTTT+AGG + chr3_3:58646412-58646431 Msa0460950:intron 25.0%
! AGAACAGAAAAAATCATCAT+GGG - chr3_3:58646444-58646463 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG - chr3_3:58646661-58646680 None:intergenic 25.0%
!!! AGAGTTTTAATATCATGGTT+TGG - chr3_3:58646666-58646685 None:intergenic 25.0%
!!! GTACAAGAGTTTTAATATCA+TGG - chr3_3:58646671-58646690 None:intergenic 25.0%
!!! TTTTTTTCTCTCATTATGAC+AGG + chr3_3:58646744-58646763 Msa0460950:intron 25.0%
!! TTCTGAGTTTTACTTATTTG+GGG + chr3_3:58647110-58647129 Msa0460950:intron 25.0%
! TGATTCTTGAATGTATCAAA+TGG + chr3_3:58647244-58647263 Msa0460950:intron 25.0%
! TTATGGATCAAACTAACTAA+CGG - chr3_3:58647387-58647406 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG + chr3_3:58647823-58647842 Msa0460950:intron 25.0%
! TGCACAATCATATAAGAAAA+TGG + chr3_3:58647992-58648011 Msa0460950:intron 25.0%
!! TGGTGAATTTTTATTGTCAT+TGG + chr3_3:58648136-58648155 Msa0460950:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG - chr3_3:58648631-58648650 None:intergenic 25.0%
! GAATAACTTGATTCAAACAA+AGG - chr3_3:58648735-58648754 None:intergenic 25.0%
! ATATGTAGTAGACTTGAAAT+CGG - chr3_3:58649207-58649226 None:intergenic 25.0%
!! ATTTCAAGTCTACTACATAT+GGG + chr3_3:58649207-58649226 Msa0460950:intron 25.0%
! AGAACAACAACAAAAACAAA+TGG - chr3_3:58649266-58649285 None:intergenic 25.0%
!!! TTTGTTGTTGTTCTAATTGT+TGG + chr3_3:58649272-58649291 Msa0460950:intron 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG + chr3_3:58649526-58649545 Msa0460950:three_prime_UTR 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG + chr3_3:58649532-58649551 Msa0460950:three_prime_UTR 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG + chr3_3:58649551-58649570 Msa0460950:three_prime_UTR 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG + chr3_3:58649579-58649598 Msa0460950:three_prime_UTR 25.0%
! GAAATATGAAACCTATAACA+AGG - chr3_3:58649605-58649624 None:intergenic 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG + chr3_3:58649789-58649808 Msa0460950:three_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG - chr3_3:58649837-58649856 None:intergenic 25.0%
! GAATCAAATGAAAACGAAAA+CGG - chr3_3:58645872-58645891 None:intergenic 25.0%
! AGAATCTAACCATATGTATT+CGG - chr3_3:58646036-58646055 None:intergenic 25.0%
!!! GATGTTTTGTTCTGTTTTTT+AGG + chr3_3:58646412-58646431 Msa0460950:intron 25.0%
! AGAACAGAAAAAATCATCAT+GGG - chr3_3:58646444-58646463 None:intergenic 25.0%
!!! TTTAATATCATGGTTTGGTT+TGG - chr3_3:58646661-58646680 None:intergenic 25.0%
!!! AGAGTTTTAATATCATGGTT+TGG - chr3_3:58646666-58646685 None:intergenic 25.0%
!!! GTACAAGAGTTTTAATATCA+TGG - chr3_3:58646671-58646690 None:intergenic 25.0%
!!! TTTTTTTCTCTCATTATGAC+AGG + chr3_3:58646744-58646763 Msa0460950:intron 25.0%
!! TTCTGAGTTTTACTTATTTG+GGG + chr3_3:58647110-58647129 Msa0460950:intron 25.0%
! TGATTCTTGAATGTATCAAA+TGG + chr3_3:58647244-58647263 Msa0460950:intron 25.0%
! TTATGGATCAAACTAACTAA+CGG - chr3_3:58647387-58647406 None:intergenic 25.0%
!! TTGTTGTATGATTTGTGATT+AGG + chr3_3:58647823-58647842 Msa0460950:intron 25.0%
! TGCACAATCATATAAGAAAA+TGG + chr3_3:58647992-58648011 Msa0460950:intron 25.0%
!! TGGTGAATTTTTATTGTCAT+TGG + chr3_3:58648136-58648155 Msa0460950:intron 25.0%
! AACAAAGAAAGTTAGTTAGT+TGG - chr3_3:58648631-58648650 None:intergenic 25.0%
! GAATAACTTGATTCAAACAA+AGG - chr3_3:58648735-58648754 None:intergenic 25.0%
! ATATGTAGTAGACTTGAAAT+CGG - chr3_3:58649207-58649226 None:intergenic 25.0%
!! ATTTCAAGTCTACTACATAT+GGG + chr3_3:58649207-58649226 Msa0460950:intron 25.0%
! AGAACAACAACAAAAACAAA+TGG - chr3_3:58649266-58649285 None:intergenic 25.0%
!!! TTTGTTGTTGTTCTAATTGT+TGG + chr3_3:58649272-58649291 Msa0460950:intron 25.0%
!!! ATTTGGTCATTGTTTTTTCT+AGG + chr3_3:58649526-58649545 Msa0460950:three_prime_UTR 25.0%
!!! TCATTGTTTTTTCTAGGATT+TGG + chr3_3:58649532-58649551 Msa0460950:three_prime_UTR 25.0%
!! TTGGATTTGTGTTATTGTTA+TGG + chr3_3:58649551-58649570 Msa0460950:three_prime_UTR 25.0%
!! ACTTTGTTTGTTTGAATTTG+AGG + chr3_3:58649579-58649598 Msa0460950:three_prime_UTR 25.0%
! GAAATATGAAACCTATAACA+AGG - chr3_3:58649605-58649624 None:intergenic 25.0%
!!! CTTTTTGGTTGGATTTTTTT+TGG + chr3_3:58649789-58649808 Msa0460950:three_prime_UTR 25.0%
! TACAATGCATAATATATGCA+AGG - chr3_3:58649837-58649856 None:intergenic 25.0%
AAAAGATTATAGAGAAGGTG+AGG + chr3_3:58645768-58645787 Msa0460950:five_prime_UTR 30.0%
TTGTTGTGAATAGAGAAATG+AGG - chr3_3:58645844-58645863 None:intergenic 30.0%
TCAAATCGAATCGAATCTTT+AGG + chr3_3:58645898-58645917 Msa0460950:five_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG - chr3_3:58646069-58646088 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG - chr3_3:58646070-58646089 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG - chr3_3:58646210-58646229 None:intergenic 30.0%
AAGAGAGAGAAAATAATCAC+TGG - chr3_3:58646310-58646329 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG + chr3_3:58646390-58646409 Msa0460950:intron 30.0%
CAGAACAGAAAAAATCATCA+TGG - chr3_3:58646445-58646464 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG + chr3_3:58646469-58646488 Msa0460950:intron 30.0%
TATTGTTACCCCTTCTAAAT+GGG - chr3_3:58647172-58647191 None:intergenic 30.0%
ATATTGTTACCCCTTCTAAA+TGG - chr3_3:58647173-58647192 None:intergenic 30.0%
!!! TGTGTCTTTTTTAACGCATT+TGG + chr3_3:58647313-58647332 Msa0460950:intron 30.0%
CTAACTAACGGAAAACATAT+TGG - chr3_3:58647375-58647394 None:intergenic 30.0%
!!! TGTCTTTGTTGGTGATTTTA+TGG - chr3_3:58647404-58647423 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG - chr3_3:58647537-58647556 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG + chr3_3:58647828-58647847 Msa0460950:intron 30.0%
TCTCATATTATTACCACTCA+TGG - chr3_3:58648023-58648042 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG + chr3_3:58648116-58648135 Msa0460950:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG - chr3_3:58648584-58648603 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG - chr3_3:58648590-58648609 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG + chr3_3:58648587-58648606 Msa0460950:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG + chr3_3:58648644-58648663 Msa0460950:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG - chr3_3:58648705-58648724 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG - chr3_3:58648706-58648725 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG - chr3_3:58648712-58648731 None:intergenic 30.0%
TAACTTGATTCAAACAAAGG+TGG - chr3_3:58648732-58648751 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG - chr3_3:58648775-58648794 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG - chr3_3:58648781-58648800 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG + chr3_3:58649117-58649136 Msa0460950:CDS 30.0%
TTATTTGCTTACCCATAAGA+AGG - chr3_3:58649131-58649150 None:intergenic 30.0%
! GATTTCAAGTCTACTACATA+TGG + chr3_3:58649206-58649225 Msa0460950:intron 30.0%
! TTTCAAGTCTACTACATATG+GGG + chr3_3:58649208-58649227 Msa0460950:intron 30.0%
AAAAACAAATGGTTCAGACT+AGG - chr3_3:58649255-58649274 None:intergenic 30.0%
ATCATGGAAGTAACAACATA+TGG - chr3_3:58649418-58649437 None:intergenic 30.0%
ACAATGACCAAATTCTAATG+CGG - chr3_3:58649519-58649538 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG + chr3_3:58649774-58649793 Msa0460950:three_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG + chr3_3:58649792-58649811 Msa0460950:three_prime_UTR 30.0%
!!! TTGGATTTTTTTTGGTGGTT+GGG + chr3_3:58649797-58649816 Msa0460950:three_prime_UTR 30.0%
AAAAGATTATAGAGAAGGTG+AGG + chr3_3:58645768-58645787 Msa0460950:five_prime_UTR 30.0%
TTGTTGTGAATAGAGAAATG+AGG - chr3_3:58645844-58645863 None:intergenic 30.0%
TCAAATCGAATCGAATCTTT+AGG + chr3_3:58645898-58645917 Msa0460950:five_prime_UTR 30.0%
!! TTTTGTTTGTAAGCATGTGA+GGG - chr3_3:58646069-58646088 None:intergenic 30.0%
!! TTTTTGTTTGTAAGCATGTG+AGG - chr3_3:58646070-58646089 None:intergenic 30.0%
! ATGATTCTAGAAAAACGTTG+CGG - chr3_3:58646210-58646229 None:intergenic 30.0%
AAGAGAGAGAAAATAATCAC+TGG - chr3_3:58646310-58646329 None:intergenic 30.0%
!!! TAAGTTGATTTTGGGATATG+AGG + chr3_3:58646390-58646409 Msa0460950:intron 30.0%
CAGAACAGAAAAAATCATCA+TGG - chr3_3:58646445-58646464 None:intergenic 30.0%
!!! TGTTTTTTGATGGTTGAGTA+TGG + chr3_3:58646469-58646488 Msa0460950:intron 30.0%
TATTGTTACCCCTTCTAAAT+GGG - chr3_3:58647172-58647191 None:intergenic 30.0%
ATATTGTTACCCCTTCTAAA+TGG - chr3_3:58647173-58647192 None:intergenic 30.0%
!!! TGTGTCTTTTTTAACGCATT+TGG + chr3_3:58647313-58647332 Msa0460950:intron 30.0%
CTAACTAACGGAAAACATAT+TGG - chr3_3:58647375-58647394 None:intergenic 30.0%
!!! TGTCTTTGTTGGTGATTTTA+TGG - chr3_3:58647404-58647423 None:intergenic 30.0%
CAGATGATTCAATATACAAC+AGG - chr3_3:58647537-58647556 None:intergenic 30.0%
! GTATGATTTGTGATTAGGTA+TGG + chr3_3:58647828-58647847 Msa0460950:intron 30.0%
TCTCATATTATTACCACTCA+TGG - chr3_3:58648023-58648042 None:intergenic 30.0%
! CTCAATTTGAACTTGTCTTT+TGG + chr3_3:58648116-58648135 Msa0460950:intron 30.0%
! AATAAGTCAAAAAGAGGTGT+TGG - chr3_3:58648584-58648603 None:intergenic 30.0%
CCATTCAATAAGTCAAAAAG+AGG - chr3_3:58648590-58648609 None:intergenic 30.0%
!!! CCTCTTTTTGACTTATTGAA+TGG + chr3_3:58648587-58648606 Msa0460950:intron 30.0%
! CTTTGTTTATGTTCCAATAG+AGG + chr3_3:58648644-58648663 Msa0460950:intron 30.0%
!!! AGCAAACCTTAATTGGTTTT+GGG - chr3_3:58648705-58648724 None:intergenic 30.0%
!! TAGCAAACCTTAATTGGTTT+TGG - chr3_3:58648706-58648725 None:intergenic 30.0%
TGGAAATAGCAAACCTTAAT+TGG - chr3_3:58648712-58648731 None:intergenic 30.0%
TAACTTGATTCAAACAAAGG+TGG - chr3_3:58648732-58648751 None:intergenic 30.0%
TATATCAATTGGAAAGGAGT+TGG - chr3_3:58648775-58648794 None:intergenic 30.0%
GACAAGTATATCAATTGGAA+AGG - chr3_3:58648781-58648800 None:intergenic 30.0%
TGACATTAACACCTTCTTAT+GGG + chr3_3:58649117-58649136 Msa0460950:CDS 30.0%
TTATTTGCTTACCCATAAGA+AGG - chr3_3:58649131-58649150 None:intergenic 30.0%
! GATTTCAAGTCTACTACATA+TGG + chr3_3:58649206-58649225 Msa0460950:intron 30.0%
! TTTCAAGTCTACTACATATG+GGG + chr3_3:58649208-58649227 Msa0460950:intron 30.0%
AAAAACAAATGGTTCAGACT+AGG - chr3_3:58649255-58649274 None:intergenic 30.0%
ATCATGGAAGTAACAACATA+TGG - chr3_3:58649418-58649437 None:intergenic 30.0%
ACAATGACCAAATTCTAATG+CGG - chr3_3:58649519-58649538 None:intergenic 30.0%
!! ACTTATGGACAACTACTTTT+TGG + chr3_3:58649774-58649793 Msa0460950:three_prime_UTR 30.0%
!!! TTTGGTTGGATTTTTTTTGG+TGG + chr3_3:58649792-58649811 Msa0460950:three_prime_UTR 30.0%
!!! TTGGATTTTTTTTGGTGGTT+GGG + chr3_3:58649797-58649816 Msa0460950:three_prime_UTR 30.0%
TAGGAACAGAAAAACCAACT+AGG + chr3_3:58645796-58645815 Msa0460950:five_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG - chr3_3:58645813-58645832 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG - chr3_3:58645983-58646002 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG + chr3_3:58646024-58646043 Msa0460950:CDS 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG - chr3_3:58646142-58646161 None:intergenic 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG + chr3_3:58646459-58646478 Msa0460950:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG - chr3_3:58646633-58646652 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG - chr3_3:58646641-58646660 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG - chr3_3:58646656-58646675 None:intergenic 35.0%
TTCTCTCATTATGACAGGAT+TGG + chr3_3:58646749-58646768 Msa0460950:intron 35.0%
ATAACTTCACTATCTTCTCC+AGG - chr3_3:58646997-58647016 None:intergenic 35.0%
!! GAGTTTTACTTATTTGGGGT+TGG + chr3_3:58647114-58647133 Msa0460950:intron 35.0%
TCTAAATGGGTCCTTGAAAA+TGG - chr3_3:58647159-58647178 None:intergenic 35.0%
!! TTTTCAAGGACCCATTTAGA+AGG + chr3_3:58647159-58647178 Msa0460950:CDS 35.0%
TTTCAAGGACCCATTTAGAA+GGG + chr3_3:58647160-58647179 Msa0460950:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG + chr3_3:58647175-58647194 Msa0460950:CDS 35.0%
AGTAGCAACAAAAGATACCA+TGG - chr3_3:58647750-58647769 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG - chr3_3:58647789-58647808 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG - chr3_3:58647797-58647816 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG - chr3_3:58647871-58647890 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG + chr3_3:58647871-58647890 Msa0460950:CDS 35.0%
AATGTGAGTCAACAATGTCA+CGG - chr3_3:58648262-58648281 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG + chr3_3:58648305-58648324 Msa0460950:CDS 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG - chr3_3:58648625-58648644 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG - chr3_3:58648698-58648717 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG + chr3_3:58648696-58648715 Msa0460950:CDS 35.0%
TAATGCAAAACTAGGGTGAT+TGG + chr3_3:58648837-58648856 Msa0460950:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG + chr3_3:58649019-58649038 Msa0460950:CDS 35.0%
TGAAAGCAATTGAGAAGCTT+GGG + chr3_3:58649020-58649039 Msa0460950:CDS 35.0%
CTGACATTAACACCTTCTTA+TGG + chr3_3:58649116-58649135 Msa0460950:CDS 35.0%
TATGGATCCATGTTAGATGA+TGG - chr3_3:58649400-58649419 None:intergenic 35.0%
! GTTGATTCCGCATTAGAATT+TGG + chr3_3:58649509-58649528 Msa0460950:three_prime_UTR 35.0%
!! TGAATTTGAGGCCTTGTTAT+AGG + chr3_3:58649591-58649610 Msa0460950:three_prime_UTR 35.0%
AAAAATGCCAATGACCATGA+GGG + chr3_3:58649706-58649725 Msa0460950:three_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG + chr3_3:58649778-58649797 Msa0460950:three_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+TGG + chr3_3:58649796-58649815 Msa0460950:three_prime_UTR 35.0%
!!! TGGATTTTTTTTGGTGGTTG+GGG + chr3_3:58649798-58649817 Msa0460950:three_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG - chr3_3:58649830-58649849 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - chr3_3:58649831-58649850 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr3_3:58649832-58649851 None:intergenic 35.0%
TAGGAACAGAAAAACCAACT+AGG + chr3_3:58645796-58645815 Msa0460950:five_prime_UTR 35.0%
!! GGTCTTATTTATAGCCTAGT+TGG - chr3_3:58645813-58645832 None:intergenic 35.0%
!! CAAGGTTGATAAGATCTGAA+AGG - chr3_3:58645983-58646002 None:intergenic 35.0%
AAATCATCGCCGAATACATA+TGG + chr3_3:58646024-58646043 Msa0460950:CDS 35.0%
! AGTAGTGTTTTTCGTACGTA+CGG - chr3_3:58646142-58646161 None:intergenic 35.0%
!!! GTTCTGACTCTGTTTTTTGA+TGG + chr3_3:58646459-58646478 Msa0460950:intron 35.0%
TATTGTACTTAGTGGTAGAC+TGG - chr3_3:58646633-58646652 None:intergenic 35.0%
!! TGGTTTGGTATTGTACTTAG+TGG - chr3_3:58646641-58646660 None:intergenic 35.0%
!! TATCATGGTTTGGTTTGGTT+TGG - chr3_3:58646656-58646675 None:intergenic 35.0%
TTCTCTCATTATGACAGGAT+TGG + chr3_3:58646749-58646768 Msa0460950:intron 35.0%
ATAACTTCACTATCTTCTCC+AGG - chr3_3:58646997-58647016 None:intergenic 35.0%
!! GAGTTTTACTTATTTGGGGT+TGG + chr3_3:58647114-58647133 Msa0460950:intron 35.0%
TCTAAATGGGTCCTTGAAAA+TGG - chr3_3:58647159-58647178 None:intergenic 35.0%
!! TTTTCAAGGACCCATTTAGA+AGG + chr3_3:58647159-58647178 Msa0460950:CDS 35.0%
TTTCAAGGACCCATTTAGAA+GGG + chr3_3:58647160-58647179 Msa0460950:CDS 35.0%
TAGAAGGGGTAACAATATCT+TGG + chr3_3:58647175-58647194 Msa0460950:CDS 35.0%
AGTAGCAACAAAAGATACCA+TGG - chr3_3:58647750-58647769 None:intergenic 35.0%
ACAGTAAACAAGTGGCAAAA+AGG - chr3_3:58647789-58647808 None:intergenic 35.0%
ATCAGAACACAGTAAACAAG+TGG - chr3_3:58647797-58647816 None:intergenic 35.0%
ATTGATGTCTTTCTGCAACA+AGG - chr3_3:58647871-58647890 None:intergenic 35.0%
TGTTGCAGAAAGACATCAAT+TGG + chr3_3:58647871-58647890 Msa0460950:CDS 35.0%
AATGTGAGTCAACAATGTCA+CGG - chr3_3:58648262-58648281 None:intergenic 35.0%
ATCAACATCAGTGGAATCAA+TGG + chr3_3:58648305-58648324 Msa0460950:CDS 35.0%
GAAAGTTAGTTAGTTGGAGA+AGG - chr3_3:58648625-58648644 None:intergenic 35.0%
!!! CTTAATTGGTTTTGGGTCAA+AGG - chr3_3:58648698-58648717 None:intergenic 35.0%
CTTTGACCCAAAACCAATTA+AGG + chr3_3:58648696-58648715 Msa0460950:CDS 35.0%
TAATGCAAAACTAGGGTGAT+TGG + chr3_3:58648837-58648856 Msa0460950:intron 35.0%
TTGAAAGCAATTGAGAAGCT+TGG + chr3_3:58649019-58649038 Msa0460950:CDS 35.0%
TGAAAGCAATTGAGAAGCTT+GGG + chr3_3:58649020-58649039 Msa0460950:CDS 35.0%
CTGACATTAACACCTTCTTA+TGG + chr3_3:58649116-58649135 Msa0460950:CDS 35.0%
TATGGATCCATGTTAGATGA+TGG - chr3_3:58649400-58649419 None:intergenic 35.0%
! GTTGATTCCGCATTAGAATT+TGG + chr3_3:58649509-58649528 Msa0460950:three_prime_UTR 35.0%
!! TGAATTTGAGGCCTTGTTAT+AGG + chr3_3:58649591-58649610 Msa0460950:three_prime_UTR 35.0%
AAAAATGCCAATGACCATGA+GGG + chr3_3:58649706-58649725 Msa0460950:three_prime_UTR 35.0%
!!! ATGGACAACTACTTTTTGGT+TGG + chr3_3:58649778-58649797 Msa0460950:three_prime_UTR 35.0%
!!! GTTGGATTTTTTTTGGTGGT+TGG + chr3_3:58649796-58649815 Msa0460950:three_prime_UTR 35.0%
!!! TGGATTTTTTTTGGTGGTTG+GGG + chr3_3:58649798-58649817 Msa0460950:three_prime_UTR 35.0%
CATAATATATGCAAGGTCTG+GGG - chr3_3:58649830-58649849 None:intergenic 35.0%
GCATAATATATGCAAGGTCT+GGG - chr3_3:58649831-58649850 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+TGG - chr3_3:58649832-58649851 None:intergenic 35.0%
ATAGAGAAATGAGGCAGTGT+GGG - chr3_3:58645835-58645854 None:intergenic 40.0%
AATAGAGAAATGAGGCAGTG+TGG - chr3_3:58645836-58645855 None:intergenic 40.0%
!!! GGAGAGACATGTTTTGGTTT+TGG - chr3_3:58645962-58645981 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG - chr3_3:58645968-58645987 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG - chr3_3:58646012-58646031 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG - chr3_3:58646021-58646040 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG - chr3_3:58646207-58646226 None:intergenic 40.0%
TCTCATTATGACAGGATTGG+TGG + chr3_3:58646752-58646771 Msa0460950:intron 40.0%
GAACCATCATAGTTCCACTT+GGG - chr3_3:58646958-58646977 None:intergenic 40.0%
TTCAAGGACCCATTTAGAAG+GGG + chr3_3:58647161-58647180 Msa0460950:CDS 40.0%
ATCATCGAGTGTGTCTTTGT+TGG - chr3_3:58647415-58647434 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG - chr3_3:58647479-58647498 None:intergenic 40.0%
CTATTGTGAGTTTATGCAGC+TGG + chr3_3:58647576-58647595 Msa0460950:intron 40.0%
ATCAGGATGGCTGAAAATCT+TGG - chr3_3:58647712-58647731 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG + chr3_3:58647730-58647749 Msa0460950:CDS 40.0%
! AAAGACATCAATTGGCCTCT+TGG + chr3_3:58647879-58647898 Msa0460950:CDS 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG - chr3_3:58647930-58647949 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG + chr3_3:58648212-58648231 Msa0460950:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG + chr3_3:58648281-58648300 Msa0460950:CDS 40.0%
TAAGTCCAACTTACTTGACC+AGG - chr3_3:58648341-58648360 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG + chr3_3:58648455-58648474 Msa0460950:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG + chr3_3:58648511-58648530 Msa0460950:CDS 40.0%
CAAAACTAGGGTGATTGGAA+TGG + chr3_3:58648842-58648861 Msa0460950:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG - chr3_3:58648966-58648985 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG + chr3_3:58648980-58648999 Msa0460950:CDS 40.0%
ACCATCTTCTCTCATAGACT+TGG - chr3_3:58648984-58649003 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG + chr3_3:58648983-58649002 Msa0460950:CDS 40.0%
!! TACTACATATGGGGTTAGTC+CGG + chr3_3:58649217-58649236 Msa0460950:intron 40.0%
TGTTGTTCTAATTGTTGGCG+TGG + chr3_3:58649277-58649296 Msa0460950:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG + chr3_3:58649295-58649314 Msa0460950:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG + chr3_3:58649371-58649390 Msa0460950:CDS 40.0%
! AAGGTTATTTCGAGGATAGG+AGG + chr3_3:58649374-58649393 Msa0460950:CDS 40.0%
TTATGGTTTCCAGAGAATGG+TGG - chr3_3:58649449-58649468 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG - chr3_3:58649476-58649495 None:intergenic 40.0%
GAAAAATGCCAATGACCATG+AGG + chr3_3:58649705-58649724 Msa0460950:three_prime_UTR 40.0%
ATAGAGAAATGAGGCAGTGT+GGG - chr3_3:58645835-58645854 None:intergenic 40.0%
AATAGAGAAATGAGGCAGTG+TGG - chr3_3:58645836-58645855 None:intergenic 40.0%
!!! GGAGAGACATGTTTTGGTTT+TGG - chr3_3:58645962-58645981 None:intergenic 40.0%
! CTGAAAGGAGAGACATGTTT+TGG - chr3_3:58645968-58645987 None:intergenic 40.0%
! GATGATTTTCTCGGTGGTTT+CGG - chr3_3:58646012-58646031 None:intergenic 40.0%
! GTATTCGGCGATGATTTTCT+CGG - chr3_3:58646021-58646040 None:intergenic 40.0%
! ATTCTAGAAAAACGTTGCGG+TGG - chr3_3:58646207-58646226 None:intergenic 40.0%
TCTCATTATGACAGGATTGG+TGG + chr3_3:58646752-58646771 Msa0460950:intron 40.0%
GAACCATCATAGTTCCACTT+GGG - chr3_3:58646958-58646977 None:intergenic 40.0%
TTCAAGGACCCATTTAGAAG+GGG + chr3_3:58647161-58647180 Msa0460950:CDS 40.0%
ATCATCGAGTGTGTCTTTGT+TGG - chr3_3:58647415-58647434 None:intergenic 40.0%
TTCTGATCCCTAAATGTGTG+AGG - chr3_3:58647479-58647498 None:intergenic 40.0%
CTATTGTGAGTTTATGCAGC+TGG + chr3_3:58647576-58647595 Msa0460950:intron 40.0%
ATCAGGATGGCTGAAAATCT+TGG - chr3_3:58647712-58647731 None:intergenic 40.0%
! ATGTTGTTGCTGAAGTACCA+TGG + chr3_3:58647730-58647749 Msa0460950:CDS 40.0%
! AAAGACATCAATTGGCCTCT+TGG + chr3_3:58647879-58647898 Msa0460950:CDS 40.0%
! TGAAAGTGAGTTTTCACCTG+AGG - chr3_3:58647930-58647949 None:intergenic 40.0%
CAATAGGGACCATACTATTG+TGG + chr3_3:58648212-58648231 Msa0460950:intron 40.0%
TACAAAGCCTGTCTTTATGC+CGG + chr3_3:58648281-58648300 Msa0460950:CDS 40.0%
TAAGTCCAACTTACTTGACC+AGG - chr3_3:58648341-58648360 None:intergenic 40.0%
! ATGTAGTGGGAATTCCAAGT+TGG + chr3_3:58648455-58648474 Msa0460950:intron 40.0%
!! ATGGGTTGCTCGTTACATTT+TGG + chr3_3:58648511-58648530 Msa0460950:CDS 40.0%
CAAAACTAGGGTGATTGGAA+TGG + chr3_3:58648842-58648861 Msa0460950:intron 40.0%
!! CTTGGTGCTACAGCATTATA+AGG - chr3_3:58648966-58648985 None:intergenic 40.0%
ACCAAGTCTATGAGAGAAGA+TGG + chr3_3:58648980-58648999 Msa0460950:CDS 40.0%
ACCATCTTCTCTCATAGACT+TGG - chr3_3:58648984-58649003 None:intergenic 40.0%
AAGTCTATGAGAGAAGATGG+TGG + chr3_3:58648983-58649002 Msa0460950:CDS 40.0%
!! TACTACATATGGGGTTAGTC+CGG + chr3_3:58649217-58649236 Msa0460950:intron 40.0%
TGTTGTTCTAATTGTTGGCG+TGG + chr3_3:58649277-58649296 Msa0460950:intron 40.0%
!! CGTGGCTTGTGTTATTTGAA+GGG + chr3_3:58649295-58649314 Msa0460950:intron 40.0%
! GGAAAGGTTATTTCGAGGAT+AGG + chr3_3:58649371-58649390 Msa0460950:CDS 40.0%
! AAGGTTATTTCGAGGATAGG+AGG + chr3_3:58649374-58649393 Msa0460950:CDS 40.0%
TTATGGTTTCCAGAGAATGG+TGG - chr3_3:58649449-58649468 None:intergenic 40.0%
TACTTCAATGCATGTGTGTG+TGG - chr3_3:58649476-58649495 None:intergenic 40.0%
GAAAAATGCCAATGACCATG+AGG + chr3_3:58649705-58649724 Msa0460950:three_prime_UTR 40.0%
TAGAGAAGGTGAGGAAGACT+AGG + chr3_3:58645777-58645796 Msa0460950:five_prime_UTR 45.0%
TAGAGAAATGAGGCAGTGTG+GGG - chr3_3:58645834-58645853 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG - chr3_3:58646623-58646642 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG - chr3_3:58646624-58646643 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG - chr3_3:58646629-58646648 None:intergenic 45.0%
! TATGACAGGATTGGTGGATC+TGG + chr3_3:58646758-58646777 Msa0460950:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG + chr3_3:58646952-58646971 Msa0460950:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG - chr3_3:58646959-58646978 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG + chr3_3:58646964-58646983 Msa0460950:CDS 45.0%
! GGTCCTTGAAAATGGCTTGT+GGG - chr3_3:58647151-58647170 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG - chr3_3:58647466-58647485 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG + chr3_3:58647468-58647487 Msa0460950:intron 45.0%
TGACACGCCTCACACATTTA+GGG + chr3_3:58647469-58647488 Msa0460950:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG + chr3_3:58647590-58647609 Msa0460950:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG - chr3_3:58647681-58647700 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG - chr3_3:58647682-58647701 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG - chr3_3:58647725-58647744 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG - chr3_3:58647729-58647748 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG + chr3_3:58647883-58647902 Msa0460950:CDS 45.0%
GAAAATGGTGTGACCATGAG+TGG + chr3_3:58648007-58648026 Msa0460950:intron 45.0%
GATTCCACTGATGTTGATGC+CGG - chr3_3:58648303-58648322 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG + chr3_3:58648320-58648339 Msa0460950:CDS 45.0%
TGATGCCTGGTCAAGTAAGT+TGG + chr3_3:58648333-58648352 Msa0460950:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG + chr3_3:58648492-58648511 Msa0460950:CDS 45.0%
! CTCTGCTGGTGATGAGATAT+GGG + chr3_3:58648493-58648512 Msa0460950:CDS 45.0%
! GGTTGCTCGTTACATTTTGG+AGG + chr3_3:58648514-58648533 Msa0460950:CDS 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG + chr3_3:58648518-58648537 Msa0460950:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG + chr3_3:58648521-58648540 Msa0460950:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG + chr3_3:58648654-58648673 Msa0460950:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG - chr3_3:58648660-58648679 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG + chr3_3:58648867-58648886 Msa0460950:CDS 45.0%
! AAGGAGCACATTGCTGCTTA+TGG + chr3_3:58649052-58649071 Msa0460950:CDS 45.0%
! CACATTGCTGCTTATGGAGA+AGG + chr3_3:58649058-58649077 Msa0460950:CDS 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG + chr3_3:58649294-58649313 Msa0460950:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG + chr3_3:58649333-58649352 Msa0460950:CDS 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG + chr3_3:58649366-58649385 Msa0460950:CDS 45.0%
TAGGAGGCCATCATCTAACA+TGG + chr3_3:58649390-58649409 Msa0460950:CDS 45.0%
! AATGGTGGTGTCTGCAATCA+TGG - chr3_3:58649434-58649453 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG - chr3_3:58649452-58649471 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG - chr3_3:58649473-58649492 None:intergenic 45.0%
TTGTGAGCTGCTCAATTGGT+AGG - chr3_3:58649860-58649879 None:intergenic 45.0%
TACCAATTGAGCAGCTCACA+AGG + chr3_3:58649859-58649878 Msa0460950:three_prime_UTR 45.0%
TAGAGAAGGTGAGGAAGACT+AGG + chr3_3:58645777-58645796 Msa0460950:five_prime_UTR 45.0%
TAGAGAAATGAGGCAGTGTG+GGG - chr3_3:58645834-58645853 None:intergenic 45.0%
AGTGGTAGACTGGTAGGTTT+GGG - chr3_3:58646623-58646642 None:intergenic 45.0%
TAGTGGTAGACTGGTAGGTT+TGG - chr3_3:58646624-58646643 None:intergenic 45.0%
GTACTTAGTGGTAGACTGGT+AGG - chr3_3:58646629-58646648 None:intergenic 45.0%
! TATGACAGGATTGGTGGATC+TGG + chr3_3:58646758-58646777 Msa0460950:intron 45.0%
CTTCCCAAGTGGAACTATGA+TGG + chr3_3:58646952-58646971 Msa0460950:CDS 45.0%
GGAACCATCATAGTTCCACT+TGG - chr3_3:58646959-58646978 None:intergenic 45.0%
AACTATGATGGTTCCAGCAC+AGG + chr3_3:58646964-58646983 Msa0460950:CDS 45.0%
! GGTCCTTGAAAATGGCTTGT+GGG - chr3_3:58647151-58647170 None:intergenic 45.0%
ATGTGTGAGGCGTGTCAATA+TGG - chr3_3:58647466-58647485 None:intergenic 45.0%
TTGACACGCCTCACACATTT+AGG + chr3_3:58647468-58647487 Msa0460950:intron 45.0%
TGACACGCCTCACACATTTA+GGG + chr3_3:58647469-58647488 Msa0460950:intron 45.0%
!! TGCAGCTGGTCTTGTTTCAT+TGG + chr3_3:58647590-58647609 Msa0460950:intron 45.0%
! TGTCTCTTGTTGGTGGGAAT+GGG - chr3_3:58647681-58647700 None:intergenic 45.0%
! ATGTCTCTTGTTGGTGGGAA+TGG - chr3_3:58647682-58647701 None:intergenic 45.0%
CTTCAGCAACAACATCAGGA+TGG - chr3_3:58647725-58647744 None:intergenic 45.0%
GGTACTTCAGCAACAACATC+AGG - chr3_3:58647729-58647748 None:intergenic 45.0%
! ACATCAATTGGCCTCTTGGT+TGG + chr3_3:58647883-58647902 Msa0460950:CDS 45.0%
GAAAATGGTGTGACCATGAG+TGG + chr3_3:58648007-58648026 Msa0460950:intron 45.0%
GATTCCACTGATGTTGATGC+CGG - chr3_3:58648303-58648322 None:intergenic 45.0%
ATCAATGGTGAAGTGATGCC+TGG + chr3_3:58648320-58648339 Msa0460950:CDS 45.0%
TGATGCCTGGTCAAGTAAGT+TGG + chr3_3:58648333-58648352 Msa0460950:intron 45.0%
! TCTCTGCTGGTGATGAGATA+TGG + chr3_3:58648492-58648511 Msa0460950:CDS 45.0%
! CTCTGCTGGTGATGAGATAT+GGG + chr3_3:58648493-58648512 Msa0460950:CDS 45.0%
! GGTTGCTCGTTACATTTTGG+AGG + chr3_3:58648514-58648533 Msa0460950:CDS 45.0%
!! GCTCGTTACATTTTGGAGGT+AGG + chr3_3:58648518-58648537 Msa0460950:intron 45.0%
!! CGTTACATTTTGGAGGTAGG+TGG + chr3_3:58648521-58648540 Msa0460950:intron 45.0%
GTTCCAATAGAGGATCACTG+AGG + chr3_3:58648654-58648673 Msa0460950:intron 45.0%
CAACCTCAGTGATCCTCTAT+TGG - chr3_3:58648660-58648679 None:intergenic 45.0%
CTGGTGCTCACACAAATTAC+AGG + chr3_3:58648867-58648886 Msa0460950:CDS 45.0%
! AAGGAGCACATTGCTGCTTA+TGG + chr3_3:58649052-58649071 Msa0460950:CDS 45.0%
! CACATTGCTGCTTATGGAGA+AGG + chr3_3:58649058-58649077 Msa0460950:CDS 45.0%
!! GCGTGGCTTGTGTTATTTGA+AGG + chr3_3:58649294-58649313 Msa0460950:intron 45.0%
!! TGCGTCGATTAGAGTTGGAA+GGG + chr3_3:58649333-58649352 Msa0460950:CDS 45.0%
! AGCAGGGAAAGGTTATTTCG+AGG + chr3_3:58649366-58649385 Msa0460950:CDS 45.0%
TAGGAGGCCATCATCTAACA+TGG + chr3_3:58649390-58649409 Msa0460950:CDS 45.0%
! AATGGTGGTGTCTGCAATCA+TGG - chr3_3:58649434-58649453 None:intergenic 45.0%
GGCTTATGGTTTCCAGAGAA+TGG - chr3_3:58649452-58649471 None:intergenic 45.0%
TTCAATGCATGTGTGTGTGG+TGG - chr3_3:58649473-58649492 None:intergenic 45.0%
TTGTGAGCTGCTCAATTGGT+AGG - chr3_3:58649860-58649879 None:intergenic 45.0%
TACCAATTGAGCAGCTCACA+AGG + chr3_3:58649859-58649878 Msa0460950:three_prime_UTR 45.0%
!! TAATTTATTGAAAATATAAA+TGG + chr3_3:58646880-58646899 Msa0460950:intron 5.0%
!! TAATTTATTGAAAATATAAA+TGG + chr3_3:58646880-58646899 Msa0460950:intron 5.0%
! TTTTCTCGGTGGTTTCGGAG+AGG - chr3_3:58646007-58646026 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG - chr3_3:58646018-58646037 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG + chr3_3:58646763-58646782 Msa0460950:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG + chr3_3:58646771-58646790 Msa0460950:CDS 50.0%
TGGACTTGAGGAGCAAAGCA+AGG + chr3_3:58646783-58646802 Msa0460950:CDS 50.0%
GGACTTGAGGAGCAAAGCAA+GGG + chr3_3:58646784-58646803 Msa0460950:CDS 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG + chr3_3:58646907-58646926 Msa0460950:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG - chr3_3:58646934-58646953 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG - chr3_3:58646945-58646964 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG - chr3_3:58646946-58646965 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG + chr3_3:58647145-58647164 Msa0460950:intron 50.0%
GGGTCCTTGAAAATGGCTTG+TGG - chr3_3:58647152-58647171 None:intergenic 50.0%
TGTGATGCATACACTCCAGC+TGG + chr3_3:58647651-58647670 Msa0460950:CDS 50.0%
GCTGCATGTCTCTTGTTGGT+GGG - chr3_3:58647687-58647706 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG - chr3_3:58647688-58647707 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG - chr3_3:58647924-58647943 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG + chr3_3:58648218-58648237 Msa0460950:CDS 50.0%
GCACCAGCACCACAATAGTA+TGG - chr3_3:58648224-58648243 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG - chr3_3:58648291-58648310 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG + chr3_3:58648296-58648315 Msa0460950:CDS 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG + chr3_3:58648467-58648486 Msa0460950:CDS 50.0%
TACCAACTGAGGGACCAACT+TGG - chr3_3:58648472-58648491 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG - chr3_3:58648482-58648501 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG - chr3_3:58648483-58648502 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG + chr3_3:58648661-58648680 Msa0460950:intron 50.0%
TAGGGTGATTGGAATGGTGC+TGG + chr3_3:58648848-58648867 Msa0460950:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG + chr3_3:58649033-58649052 Msa0460950:CDS 50.0%
GCAACGAGCGTAGATTGACA+GGG + chr3_3:58649080-58649099 Msa0460950:CDS 50.0%
!! ACATATGGGGTTAGTCCGGT+TGG + chr3_3:58649221-58649240 Msa0460950:intron 50.0%
!! CATATGGGGTTAGTCCGGTT+GGG + chr3_3:58649222-58649241 Msa0460950:intron 50.0%
!! ATATGGGGTTAGTCCGGTTG+GGG + chr3_3:58649223-58649242 Msa0460950:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG + chr3_3:58649310-58649329 Msa0460950:intron 50.0%
CAACTCTAATCGACGCACCA+CGG - chr3_3:58649330-58649349 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG + chr3_3:58649332-58649351 Msa0460950:CDS 50.0%
GAAGGGACACAGAGAAAGCA+GGG + chr3_3:58649350-58649369 Msa0460950:CDS 50.0%
GACACAGAGAAAGCAGGGAA+AGG + chr3_3:58649355-58649374 Msa0460950:CDS 50.0%
TTGCAGACACCACCATTCTC+TGG + chr3_3:58649437-58649456 Msa0460950:CDS 50.0%
CATGTGTGTGTGGTGGCTTA+TGG - chr3_3:58649466-58649485 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG - chr3_3:58649716-58649735 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG + chr3_3:58649713-58649732 Msa0460950:three_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG - chr3_3:58649723-58649742 None:intergenic 50.0%
GTCCTTGTGAGCTGCTCAAT+TGG - chr3_3:58649864-58649883 None:intergenic 50.0%
! TTTTCTCGGTGGTTTCGGAG+AGG - chr3_3:58646007-58646026 None:intergenic 50.0%
! TTCGGCGATGATTTTCTCGG+TGG - chr3_3:58646018-58646037 None:intergenic 50.0%
! CAGGATTGGTGGATCTGGTT+TGG + chr3_3:58646763-58646782 Msa0460950:intron 50.0%
!! GTGGATCTGGTTTGGACTTG+AGG + chr3_3:58646771-58646790 Msa0460950:CDS 50.0%
TGGACTTGAGGAGCAAAGCA+AGG + chr3_3:58646783-58646802 Msa0460950:CDS 50.0%
GGACTTGAGGAGCAAAGCAA+GGG + chr3_3:58646784-58646803 Msa0460950:CDS 50.0%
!! TTTTGGGTGCAGACTCTACC+AGG + chr3_3:58646907-58646926 Msa0460950:intron 50.0%
AGCTGTGAAGGGTCAGTAAC+TGG - chr3_3:58646934-58646953 None:intergenic 50.0%
TCCACTTGGGAAGCTGTGAA+GGG - chr3_3:58646945-58646964 None:intergenic 50.0%
TTCCACTTGGGAAGCTGTGA+AGG - chr3_3:58646946-58646965 None:intergenic 50.0%
!! CAGCCCACAAGCCATTTTCA+AGG + chr3_3:58647145-58647164 Msa0460950:intron 50.0%
GGGTCCTTGAAAATGGCTTG+TGG - chr3_3:58647152-58647171 None:intergenic 50.0%
TGTGATGCATACACTCCAGC+TGG + chr3_3:58647651-58647670 Msa0460950:CDS 50.0%
GCTGCATGTCTCTTGTTGGT+GGG - chr3_3:58647687-58647706 None:intergenic 50.0%
AGCTGCATGTCTCTTGTTGG+TGG - chr3_3:58647688-58647707 None:intergenic 50.0%
! TGAGTTTTCACCTGAGGTCC+AGG - chr3_3:58647924-58647943 None:intergenic 50.0%
GGACCATACTATTGTGGTGC+TGG + chr3_3:58648218-58648237 Msa0460950:CDS 50.0%
GCACCAGCACCACAATAGTA+TGG - chr3_3:58648224-58648243 None:intergenic 50.0%
GTTGATGCCGGCATAAAGAC+AGG - chr3_3:58648291-58648310 None:intergenic 50.0%
TATGCCGGCATCAACATCAG+TGG + chr3_3:58648296-58648315 Msa0460950:CDS 50.0%
!! TTCCAAGTTGGTCCCTCAGT+TGG + chr3_3:58648467-58648486 Msa0460950:CDS 50.0%
TACCAACTGAGGGACCAACT+TGG - chr3_3:58648472-58648491 None:intergenic 50.0%
CCAGCAGAGATACCAACTGA+GGG - chr3_3:58648482-58648501 None:intergenic 50.0%
ACCAGCAGAGATACCAACTG+AGG - chr3_3:58648483-58648502 None:intergenic 50.0%
TAGAGGATCACTGAGGTTGC+TGG + chr3_3:58648661-58648680 Msa0460950:intron 50.0%
TAGGGTGATTGGAATGGTGC+TGG + chr3_3:58648848-58648867 Msa0460950:intron 50.0%
! GAAGCTTGGGAAGAAGCACA+AGG + chr3_3:58649033-58649052 Msa0460950:CDS 50.0%
GCAACGAGCGTAGATTGACA+GGG + chr3_3:58649080-58649099 Msa0460950:CDS 50.0%
!! ACATATGGGGTTAGTCCGGT+TGG + chr3_3:58649221-58649240 Msa0460950:intron 50.0%
!! CATATGGGGTTAGTCCGGTT+GGG + chr3_3:58649222-58649241 Msa0460950:intron 50.0%
!! ATATGGGGTTAGTCCGGTTG+GGG + chr3_3:58649223-58649242 Msa0460950:intron 50.0%
!! TTGAAGGGTGTTGCAAACCG+TGG + chr3_3:58649310-58649329 Msa0460950:intron 50.0%
CAACTCTAATCGACGCACCA+CGG - chr3_3:58649330-58649349 None:intergenic 50.0%
!! GTGCGTCGATTAGAGTTGGA+AGG + chr3_3:58649332-58649351 Msa0460950:CDS 50.0%
GAAGGGACACAGAGAAAGCA+GGG + chr3_3:58649350-58649369 Msa0460950:CDS 50.0%
GACACAGAGAAAGCAGGGAA+AGG + chr3_3:58649355-58649374 Msa0460950:CDS 50.0%
TTGCAGACACCACCATTCTC+TGG + chr3_3:58649437-58649456 Msa0460950:CDS 50.0%
CATGTGTGTGTGGTGGCTTA+TGG - chr3_3:58649466-58649485 None:intergenic 50.0%
CCTTCTTCCCTCATGGTCAT+TGG - chr3_3:58649716-58649735 None:intergenic 50.0%
CCAATGACCATGAGGGAAGA+AGG + chr3_3:58649713-58649732 Msa0460950:three_prime_UTR 50.0%
ATTCCTGCCTTCTTCCCTCA+TGG - chr3_3:58649723-58649742 None:intergenic 50.0%
GTCCTTGTGAGCTGCTCAAT+TGG - chr3_3:58649864-58649883 None:intergenic 50.0%
GAAGGGTCAGTAACTGGTCC+TGG - chr3_3:58646928-58646947 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG + chr3_3:58646941-58646960 Msa0460950:CDS 55.0%
GGCAGCTGCATGTCTCTTGT+TGG - chr3_3:58647691-58647710 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG + chr3_3:58647903-58647922 Msa0460950:CDS 55.0%
GGTCCAGGAAAACCACCAAC+TGG - chr3_3:58647909-58647928 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG + chr3_3:58647911-58647930 Msa0460950:CDS 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG + chr3_3:58648229-58648248 Msa0460950:CDS 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG + chr3_3:58648236-58648255 Msa0460950:CDS 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG + chr3_3:58648479-58648498 Msa0460950:CDS 55.0%
GATCACTGAGGTTGCTGGTG+TGG + chr3_3:58648666-58648685 Msa0460950:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG + chr3_3:58649079-58649098 Msa0460950:CDS 55.0%
GACTAGGTCAAGTCCCCAAC+CGG - chr3_3:58649239-58649258 None:intergenic 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG + chr3_3:58649328-58649347 Msa0460950:CDS 55.0%
GGAAGGGACACAGAGAAAGC+AGG + chr3_3:58649349-58649368 Msa0460950:CDS 55.0%
TGACCATGAGGGAAGAAGGC+AGG + chr3_3:58649717-58649736 Msa0460950:three_prime_UTR 55.0%
GAAGGGTCAGTAACTGGTCC+TGG - chr3_3:58646928-58646947 None:intergenic 55.0%
ACCCTTCACAGCTTCCCAAG+TGG + chr3_3:58646941-58646960 Msa0460950:CDS 55.0%
GGCAGCTGCATGTCTCTTGT+TGG - chr3_3:58647691-58647710 None:intergenic 55.0%
!!! TGGCCAGTTGGTGGTTTTCC+TGG + chr3_3:58647903-58647922 Msa0460950:CDS 55.0%
GGTCCAGGAAAACCACCAAC+TGG - chr3_3:58647909-58647928 None:intergenic 55.0%
! TGGTGGTTTTCCTGGACCTC+AGG + chr3_3:58647911-58647930 Msa0460950:CDS 55.0%
!! TTGTGGTGCTGGTGCTGACA+AGG + chr3_3:58648229-58648248 Msa0460950:CDS 55.0%
!! GCTGGTGCTGACAAGGCATT+TGG + chr3_3:58648236-58648255 Msa0460950:CDS 55.0%
! CCCTCAGTTGGTATCTCTGC+TGG + chr3_3:58648479-58648498 Msa0460950:CDS 55.0%
GATCACTGAGGTTGCTGGTG+TGG + chr3_3:58648666-58648685 Msa0460950:CDS 55.0%
GGCAACGAGCGTAGATTGAC+AGG + chr3_3:58649079-58649098 Msa0460950:CDS 55.0%
GACTAGGTCAAGTCCCCAAC+CGG - chr3_3:58649239-58649258 None:intergenic 55.0%
!! CGTGGTGCGTCGATTAGAGT+TGG + chr3_3:58649328-58649347 Msa0460950:CDS 55.0%
GGAAGGGACACAGAGAAAGC+AGG + chr3_3:58649349-58649368 Msa0460950:CDS 55.0%
TGACCATGAGGGAAGAAGGC+AGG + chr3_3:58649717-58649736 Msa0460950:three_prime_UTR 55.0%
CGGTGGTTTCGGAGAGGTCA+AGG - chr3_3:58646001-58646020 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG + chr3_3:58646976-58646995 Msa0460950:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG - chr3_3:58646980-58646999 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG + chr3_3:58647891-58647910 Msa0460950:CDS 60.0%
CCACCAACTGGCCAACCAAG+AGG - chr3_3:58647897-58647916 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG + chr3_3:58647894-58647913 Msa0460950:CDS 60.0%
CGGTGGTTTCGGAGAGGTCA+AGG - chr3_3:58646001-58646020 None:intergenic 60.0%
TCCAGCACAGGTCAAGCTCC+TGG + chr3_3:58646976-58646995 Msa0460950:CDS 60.0%
TCCAGGAGCTTGACCTGTGC+TGG - chr3_3:58646980-58646999 None:intergenic 60.0%
! TGGCCTCTTGGTTGGCCAGT+TGG + chr3_3:58647891-58647910 Msa0460950:CDS 60.0%
CCACCAACTGGCCAACCAAG+AGG - chr3_3:58647897-58647916 None:intergenic 60.0%
! CCTCTTGGTTGGCCAGTTGG+TGG + chr3_3:58647894-58647913 Msa0460950:CDS 60.0%
! GTGGGAATGGGCTCTCCAGC+TGG - chr3_3:58647669-58647688 None:intergenic 65.0%
! GTGGGAATGGGCTCTCCAGC+TGG - chr3_3:58647669-58647688 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 58645767 58649883 58645767 ID=Msa0460950;Name=Msa0460950
chr3_3 mRNA 58645767 58649883 58645767 ID=Msa0460950-mRNA-1;Parent=Msa0460950;Name=Msa0460950-mRNA-1;_AED=0.10;_eAED=0.10;_QI=205|1|1|1|1|1|12|415|356
chr3_3 exon 58645767 58646045 58645767 ID=Msa0460950-mRNA-1:exon:12199;Parent=Msa0460950-mRNA-1
chr3_3 exon 58646766 58646805 58646766 ID=Msa0460950-mRNA-1:exon:12200;Parent=Msa0460950-mRNA-1
chr3_3 exon 58646919 58647022 58646919 ID=Msa0460950-mRNA-1:exon:12201;Parent=Msa0460950-mRNA-1
chr3_3 exon 58647148 58647196 58647148 ID=Msa0460950-mRNA-1:exon:12202;Parent=Msa0460950-mRNA-1
chr3_3 exon 58647645 58647751 58647645 ID=Msa0460950-mRNA-1:exon:12203;Parent=Msa0460950-mRNA-1
chr3_3 exon 58647845 58647932 58647845 ID=Msa0460950-mRNA-1:exon:12204;Parent=Msa0460950-mRNA-1
chr3_3 exon 58648218 58648346 58648218 ID=Msa0460950-mRNA-1:exon:12205;Parent=Msa0460950-mRNA-1
chr3_3 exon 58648461 58648535 58648461 ID=Msa0460950-mRNA-1:exon:12206;Parent=Msa0460950-mRNA-1
chr3_3 exon 58648664 58648717 58648664 ID=Msa0460950-mRNA-1:exon:12207;Parent=Msa0460950-mRNA-1
chr3_3 exon 58648851 58648888 58648851 ID=Msa0460950-mRNA-1:exon:12208;Parent=Msa0460950-mRNA-1
chr3_3 exon 58648979 58649138 58648979 ID=Msa0460950-mRNA-1:exon:12209;Parent=Msa0460950-mRNA-1
chr3_3 exon 58649316 58649883 58649316 ID=Msa0460950-mRNA-1:exon:12210;Parent=Msa0460950-mRNA-1
chr3_3 five_prime_UTR 58645767 58645971 58645767 ID=Msa0460950-mRNA-1:five_prime_utr;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58645972 58646045 58645972 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58646766 58646805 58646766 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58646919 58647022 58646919 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58647148 58647196 58647148 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58647645 58647751 58647645 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58647845 58647932 58647845 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58648218 58648346 58648218 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58648461 58648535 58648461 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58648664 58648717 58648664 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58648851 58648888 58648851 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58648979 58649138 58648979 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 CDS 58649316 58649468 58649316 ID=Msa0460950-mRNA-1:cds;Parent=Msa0460950-mRNA-1
chr3_3 three_prime_UTR 58649469 58649883 58649469 ID=Msa0460950-mRNA-1:three_prime_utr;Parent=Msa0460950-mRNA-1
Gene Sequence

>Msa0460950

ATGTCTCTCCTTTCAGATCTTATCAACCTTGACCTCTCCGAAACCACCGAGAAAATCATCGCCGAATACATATGGATTGGTGGATCTGGTTTGGACTTGAGGAGCAAAGCAAGGACTCTACCAGGACCAGTTACTGACCCTTCACAGCTTCCCAAGTGGAACTATGATGGTTCCAGCACAGGTCAAGCTCCTGGAGAAGATAGTGAAGTTATTATCTACCCACAAGCCATTTTCAAGGACCCATTTAGAAGGGGTAACAATATCTTGGTTATGTGTGATGCATACACTCCAGCTGGAGAGCCCATTCCCACCAACAAGAGACATGCAGCTGCCAAGATTTTCAGCCATCCTGATGTTGTTGCTGAAGTACCATGGTATGGTATTGAGCAAGAATACACCTTGTTGCAGAAAGACATCAATTGGCCTCTTGGTTGGCCAGTTGGTGGTTTTCCTGGACCTCAGGGACCATACTATTGTGGTGCTGGTGCTGACAAGGCATTTGGCCGTGACATTGTTGACTCACATTACAAAGCCTGTCTTTATGCCGGCATCAACATCAGTGGAATCAATGGTGAAGTGATGCCTGGTCAATGGGAATTCCAAGTTGGTCCCTCAGTTGGTATCTCTGCTGGTGATGAGATATGGGTTGCTCGTTACATTTTGGAGAGGATCACTGAGGTTGCTGGTGTGGTGCTTTCCTTTGACCCAAAACCAATTAAGGGTGATTGGAATGGTGCTGGTGCTCACACAAATTACAGCACCAAGTCTATGAGAGAAGATGGTGGCTATGAAGTCATCTTGAAAGCAATTGAGAAGCTTGGGAAGAAGCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAACGAGCGTAGATTGACAGGGCGACATGAGACAGCTGACATTAACACCTTCTTATGGGGTGTTGCAAACCGTGGTGCGTCGATTAGAGTTGGAAGGGACACAGAGAAAGCAGGGAAAGGTTATTTCGAGGATAGGAGGCCATCATCTAACATGGATCCATATGTTGTTACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATAA
Protein sequence

>Msa0460950

MSLLSDLINLDLSETTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLSFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGKKHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP*