AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0822680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822680 MtrunA17_Chr5g0442981 93.989 183 6 2 1 183 1 178 2.56e-119 335
Msa0822680 MtrunA17_Chr7g0228271 69.565 46 14 0 86 131 15 60 6.22e-17 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0822680 AT2G42975.1 80.342 117 19 2 68 183 74 187 4.46e-60 185

Find 43 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGGCCTTGGTAGTAAA+TGG 0.234094 5_3:+61071022 None:intergenic
ATCTTCTTCTCGTGCACAAC+TGG 0.315548 5_3:-61072356 Msa0822680:CDS
GTAATAGTGAGTTTGATAAT+TGG 0.323795 5_3:+61073844 None:intergenic
TCGTGCACAACTGGATCTTT+TGG 0.328038 5_3:-61072347 Msa0822680:CDS
TAATTCATATAAAACCAAAA+TGG 0.363379 5_3:-61073899 Msa0822680:five_prime_UTR
TCTGAGGATGATTCTTCAAT+TGG 0.371085 5_3:-61073638 Msa0822680:intron
CTTCCACCTCTTATAATACT+AGG 0.378568 5_3:-61071141 Msa0822680:CDS
CTAGGAATAGCTATATTAAC+TGG 0.405799 5_3:-61071123 Msa0822680:CDS
GACAGGCCTTGGTAGTAAAT+GGG 0.410792 5_3:+61071023 None:intergenic
CAATCACAAGGGACTGAAAC+CGG 0.442863 5_3:-61073665 Msa0822680:CDS
GGTAATTAAATTAATATTTG+TGG 0.447236 5_3:-61073943 Msa0822680:five_prime_UTR
TCGCGAACAGCTTGCGCAGT+TGG 0.451182 5_3:-61071337 Msa0822680:CDS
TTGCGCAGTTGGTTGGAGAA+AGG 0.457947 5_3:-61071326 Msa0822680:CDS
TGCGCAGTTGGTTGGAGAAA+GGG 0.462113 5_3:-61071325 Msa0822680:CDS
CGTGTGAGAAAGGAAGGGCT+TGG 0.464216 5_3:+61073746 None:intergenic
TTCTATTTCTAGTTCTATGT+AGG 0.483900 5_3:+61073991 None:intergenic
AGAAGTGGTGGTTAGATTGA+TGG 0.485237 5_3:+61073778 None:intergenic
GCTATTCCTAGTATTATAAG+AGG 0.488609 5_3:+61071135 None:intergenic
GATGATTTCAGCCTTCCCTT+AGG 0.492206 5_3:-61071300 Msa0822680:CDS
AATTAATATTTGTGGTAGTG+AGG 0.534294 5_3:-61073935 Msa0822680:five_prime_UTR
GGTTAGATTGATGGTGGCCA+TGG 0.534595 5_3:+61073787 None:intergenic
GAACAGCTTGCGCAGTTGGT+TGG 0.536982 5_3:-61071333 Msa0822680:CDS
TTGAGACACAAGTTCAAGGT+TGG 0.538320 5_3:-61074015 Msa0822680:five_prime_UTR
AGTAAATATATTATGACTCA+AGG 0.542225 5_3:+61071084 None:intergenic
GCTTGGATGAAGAGAAGAAG+TGG 0.571593 5_3:+61073763 None:intergenic
AATTACCCCATTTACTACCA+AGG 0.574059 5_3:-61071029 Msa0822680:three_prime_UTR
ATCTAAATGAAGTGTCTCAA+AGG 0.575590 5_3:-61071206 Msa0822680:CDS
ACTTTGTGTATGTGTGATCA+AGG 0.576668 5_3:+61073967 None:intergenic
AGAATCATCCTCAGAAACTC+CGG 0.580828 5_3:+61073646 None:intergenic
GACTGAAACCGGAGTTTCTG+AGG 0.581814 5_3:-61073654 Msa0822680:CDS
ATTCCTAGTATTATAAGAGG+TGG 0.585295 5_3:+61071138 None:intergenic
TCTACAAGCTCATCAGTCAC+TGG 0.588562 5_3:-61072313 Msa0822680:intron
AAAACATGTGCTCAATCACA+AGG 0.605787 5_3:-61073677 Msa0822680:CDS
CTTCTAGGTTATGAAAGTGA+TGG 0.609052 5_3:-61071381 Msa0822680:intron
TCTCATGAAGCAAAGTTCCA+TGG 0.612827 5_3:-61073804 Msa0822680:exon
AAGCATGGTTGAATTTGATG+AGG 0.629627 5_3:+61073711 None:intergenic
ACAGGCCTTGGTAGTAAATG+GGG 0.636091 5_3:+61071024 None:intergenic
TTATATGAATTAGACAAAGG+CGG 0.649549 5_3:+61073910 None:intergenic
TGGATGAAGAGAAGAAGTGG+TGG 0.661347 5_3:+61073766 None:intergenic
TGATCACACATACACAAAGT+CGG 0.661350 5_3:-61073964 Msa0822680:five_prime_UTR
AAACATGTGCTCAATCACAA+GGG 0.709012 5_3:-61073676 Msa0822680:CDS
AGTTCTTAACAACATCACAA+AGG 0.710069 5_3:-61071251 Msa0822680:CDS
AGTGGTGGTTAGATTGATGG+TGG 0.725189 5_3:+61073781 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATATATTAATATAA+AGG + chr5_3:61071888-61071907 None:intergenic 0.0%
!! TCAATTTAATAAAAAAAAGT+GGG + chr5_3:61071432-61071451 None:intergenic 10.0%
!! TTCAATTTAATAAAAAAAAG+TGG + chr5_3:61071433-61071452 None:intergenic 10.0%
!! AATTTATTTAATATCGAAAT+TGG - chr5_3:61072254-61072273 Msa0822680:intron 10.0%
!! GGTAATTAAATTAATATTTG+TGG - chr5_3:61071079-61071098 Msa0822680:three_prime_UTR 15.0%
!! TAATTCATATAAAACCAAAA+TGG - chr5_3:61071123-61071142 Msa0822680:CDS 15.0%
!! AATAATTTCCAGTAAATTTA+TGG - chr5_3:61071676-61071695 Msa0822680:intron 15.0%
!! ATAATTTCCAGTAAATTTAT+GGG - chr5_3:61071677-61071696 Msa0822680:intron 15.0%
!! TTAATTAAATGTACCTAAAA+AGG + chr5_3:61072017-61072036 None:intergenic 15.0%
!! CATTAAATTAATGATGTATA+CGG + chr5_3:61072052-61072071 None:intergenic 15.0%
!!! AAATCAAATTTTGCTTATAA+TGG - chr5_3:61072080-61072099 Msa0822680:intron 15.0%
!!! CCTTTCAAAAAAATTATTTT+TGG + chr5_3:61072949-61072968 None:intergenic 15.0%
!!! CCAAAAATAATTTTTTTGAA+AGG - chr5_3:61072946-61072965 Msa0822680:intron 15.0%
!!! GTTTTATATGAATTAGACAA+AGG + chr5_3:61071118-61071137 None:intergenic 20.0%
!!! ATAATTGGCATTGAAAAAAT+TGG + chr5_3:61071166-61071185 None:intergenic 20.0%
!! TTAATAAAAAAAAGTGGGAT+AGG + chr5_3:61071427-61071446 None:intergenic 20.0%
!!! GATATATTTTTCTCCTTTTT+TGG + chr5_3:61071633-61071652 None:intergenic 20.0%
!! TAAATTTCCCATAAATTTAC+TGG + chr5_3:61071687-61071706 None:intergenic 20.0%
!! TATGGGAAATTTATAATTTG+TGG - chr5_3:61071694-61071713 Msa0822680:intron 20.0%
!!! ATGGGAAATTTATAATTTGT+GGG - chr5_3:61071695-61071714 Msa0822680:intron 20.0%
!! CAAAAATTGGTAAAAATGAA+AGG + chr5_3:61072139-61072158 None:intergenic 20.0%
!!! ACCAATTTTTGTTTTTAGTT+TGG - chr5_3:61072148-61072167 Msa0822680:intron 20.0%
!! ACCAAACTAAAAACAAAAAT+TGG + chr5_3:61072152-61072171 None:intergenic 20.0%
!!! AAATATACTAGTTTTCTCTT+TGG - chr5_3:61072205-61072224 Msa0822680:intron 20.0%
!! GGACTAAAATAAATATTAGA+TGG + chr5_3:61072281-61072300 None:intergenic 20.0%
!! CCAACATTATTCTTATTATT+TGG + chr5_3:61072395-61072414 None:intergenic 20.0%
!! CCAAATAATAAGAATAATGT+TGG - chr5_3:61072392-61072411 Msa0822680:intron 20.0%
!! TTTAATGCATTCTATTTGAT+TGG - chr5_3:61072424-61072443 Msa0822680:intron 20.0%
!! AAAAGTCGAAGAAAATAAAA+CGG - chr5_3:61072449-61072468 Msa0822680:intron 20.0%
!!! TTTTGATGACTTTTATTGTT+AGG - chr5_3:61072637-61072656 Msa0822680:intron 20.0%
!!! CTTTTCATAGACATTATTTT+TGG + chr5_3:61072978-61072997 None:intergenic 20.0%
!! TTAAACCAAATCTAAGAAAT+AGG + chr5_3:61073577-61073596 None:intergenic 20.0%
!!! TTAACTTCTTTCTTTGATTT+TGG - chr5_3:61073593-61073612 Msa0822680:intron 20.0%
!! AGTAAATATATTATGACTCA+AGG + chr5_3:61073941-61073960 None:intergenic 20.0%
!! CAAGAAAAAAAATAATAGAC+AGG + chr5_3:61074019-61074038 None:intergenic 20.0%
!!! TTCTATTTCTAGTTCTATGT+AGG + chr5_3:61071034-61071053 None:intergenic 25.0%
!! AATTAATATTTGTGGTAGTG+AGG - chr5_3:61071087-61071106 Msa0822680:exon 25.0%
! TTATATGAATTAGACAAAGG+CGG + chr5_3:61071115-61071134 None:intergenic 25.0%
!! GTAATAGTGAGTTTGATAAT+TGG + chr5_3:61071181-61071200 None:intergenic 25.0%
! ATATATCTTCTCTCCAAAAA+AGG - chr5_3:61071617-61071636 Msa0822680:intron 25.0%
! TACTTTAGATTCACATTGAA+AGG - chr5_3:61071948-61071967 Msa0822680:intron 25.0%
! AGGATTATATAATACTGCTT+CGG - chr5_3:61071968-61071987 Msa0822680:intron 25.0%
!! TAAGCAAATTTTGCCTTTTT+AGG - chr5_3:61072001-61072020 Msa0822680:intron 25.0%
!!! ATTTTGCTTATAATGGACAA+CGG - chr5_3:61072087-61072106 Msa0822680:intron 25.0%
! ATTGGTAAAAATGAAAGGAA+TGG + chr5_3:61072134-61072153 None:intergenic 25.0%
! TTACTATGACTAAAAGCAAA+AGG + chr5_3:61072181-61072200 None:intergenic 25.0%
! CCTTTAATATAAGCTAGATA+AGG + chr5_3:61072302-61072321 None:intergenic 25.0%
!! CCTTATCTAGCTTATATTAA+AGG - chr5_3:61072299-61072318 Msa0822680:intron 25.0%
! TTTCAGAATATGTTGATATG+AGG - chr5_3:61072575-61072594 Msa0822680:intron 25.0%
!! CACTTGAATTTTCAATGATA+TGG + chr5_3:61072894-61072913 None:intergenic 25.0%
!! CTCTTCATAGACATTAATTT+TGG + chr5_3:61073269-61073288 None:intergenic 25.0%
!! TTATACACAGTTTTCAATCT+CGG - chr5_3:61073411-61073430 Msa0822680:intron 25.0%
! CAAATCTAAGAAATAGGTTA+CGG + chr5_3:61073571-61073590 None:intergenic 25.0%
!!! TTCTTCAAGTTTTTACCTAA+GGG + chr5_3:61073740-61073759 None:intergenic 25.0%
!!! TTTCTTCAAGTTTTTACCTA+AGG + chr5_3:61073741-61073760 None:intergenic 25.0%
!!! AATTTTGAGACACAAGTTCA+AGG - chr5_3:61071003-61071022 Msa0822680:three_prime_UTR 30.0%
! GGCATTGAAAAAATTGGTTT+GGG + chr5_3:61071160-61071179 None:intergenic 30.0%
! TGGCATTGAAAAAATTGGTT+TGG + chr5_3:61071161-61071180 None:intergenic 30.0%
! TTTTGCTTAAAGAAGAAGCA+TGG + chr5_3:61071329-61071348 None:intergenic 30.0%
TTTGTATGGAATTCATGCTT+GGG + chr5_3:61071473-61071492 None:intergenic 30.0%
! CTGTGATTCAATAGTTTGTA+TGG + chr5_3:61071487-61071506 None:intergenic 30.0%
! TATGTCTGGTTTCATTGTTT+GGG - chr5_3:61071725-61071744 Msa0822680:intron 30.0%
TGTTTGGGAGTTAAAATTGA+TGG - chr5_3:61071740-61071759 Msa0822680:intron 30.0%
GAGAAAAACCAATTGTTCAA+TGG - chr5_3:61072784-61072803 Msa0822680:intron 30.0%
TTGCAAAACCATTGAACAAT+TGG + chr5_3:61072795-61072814 None:intergenic 30.0%
!! ATGGTTTTGCAAATCTCTAA+AGG - chr5_3:61072803-61072822 Msa0822680:intron 30.0%
!! GTAGTATCTTTGAAATCATG+TGG - chr5_3:61072845-61072864 Msa0822680:intron 30.0%
! ACTAGAGAGAATGAATTTTC+TGG - chr5_3:61073194-61073213 Msa0822680:intron 30.0%
AACTTTACATTACCTTCACA+TGG - chr5_3:61073223-61073242 Msa0822680:intron 30.0%
ACACATTAACATAGAGATCA+GGG + chr5_3:61073344-61073363 None:intergenic 30.0%
! TTAATGTGTCACTACTGATA+TGG - chr5_3:61073355-61073374 Msa0822680:intron 30.0%
TCTCAAAGATTCATCTGAAA+GGG - chr5_3:61073522-61073541 Msa0822680:intron 30.0%
! CGTAACCTATTTCTTAGATT+TGG - chr5_3:61073569-61073588 Msa0822680:intron 30.0%
AGTTCTTAACAACATCACAA+AGG - chr5_3:61073771-61073790 Msa0822680:CDS 30.0%
! ATCTAAATGAAGTGTCTCAA+AGG - chr5_3:61073816-61073835 Msa0822680:exon 30.0%
!!! TCAACTTTTTTCGCAACTAT+AGG - chr5_3:61073845-61073864 Msa0822680:five_prime_UTR 30.0%
ATTCCTAGTATTATAAGAGG+TGG + chr5_3:61073887-61073906 None:intergenic 30.0%
GCTATTCCTAGTATTATAAG+AGG + chr5_3:61073890-61073909 None:intergenic 30.0%
CTAGGAATAGCTATATTAAC+TGG - chr5_3:61073899-61073918 Msa0822680:five_prime_UTR 30.0%
AAAAAATAATAGACAGGCCT+TGG + chr5_3:61074013-61074032 None:intergenic 30.0%
ACTTTGTGTATGTGTGATCA+AGG + chr5_3:61071058-61071077 None:intergenic 35.0%
TGATCACACATACACAAAGT+CGG - chr5_3:61071058-61071077 Msa0822680:three_prime_UTR 35.0%
! GGGAATTGCATTTTCCATTT+TGG + chr5_3:61071140-61071159 None:intergenic 35.0%
! GTTATGTTTTCGTGTGAGAA+AGG + chr5_3:61071289-61071308 None:intergenic 35.0%
AAGCATGGTTGAATTTGATG+AGG + chr5_3:61071314-61071333 None:intergenic 35.0%
AAAACATGTGCTCAATCACA+AGG - chr5_3:61071345-61071364 Msa0822680:CDS 35.0%
AAACATGTGCTCAATCACAA+GGG - chr5_3:61071346-61071365 Msa0822680:CDS 35.0%
TCTGAGGATGATTCTTCAAT+TGG - chr5_3:61071384-61071403 Msa0822680:intron 35.0%
GTTTGTATGGAATTCATGCT+TGG + chr5_3:61071474-61071493 None:intergenic 35.0%
CTATTCTATAACTTGACACC+TGG - chr5_3:61071569-61071588 Msa0822680:intron 35.0%
AAGATATATTTCTCCCCTTG+TGG + chr5_3:61071606-61071625 None:intergenic 35.0%
! GTATGTCTGGTTTCATTGTT+TGG - chr5_3:61071724-61071743 Msa0822680:intron 35.0%
! TGGGAGTTAAAATTGATGGT+AGG - chr5_3:61071744-61071763 Msa0822680:intron 35.0%
! GGGAGTTAAAATTGATGGTA+GGG - chr5_3:61071745-61071764 Msa0822680:intron 35.0%
!! TTATAATGGACAACGGAGTA+AGG - chr5_3:61072094-61072113 Msa0822680:intron 35.0%
AGTCGAAGAAAATAAAACGG+AGG - chr5_3:61072452-61072471 Msa0822680:intron 35.0%
!! GTTCTAGTTCATGTCACTAT+AGG - chr5_3:61072597-61072616 Msa0822680:intron 35.0%
TTAGGTTCAACTGTTTGTTC+TGG + chr5_3:61073108-61073127 None:intergenic 35.0%
AGTTGAACCTAACACACATT+TGG - chr5_3:61073116-61073135 Msa0822680:intron 35.0%
GTTGAACCTAACACACATTT+GGG - chr5_3:61073117-61073136 Msa0822680:intron 35.0%
GTATCATACCATGTTGAGTA+TGG + chr5_3:61073169-61073188 None:intergenic 35.0%
CACATAAAAGTTCCATGTGA+AGG + chr5_3:61073238-61073257 None:intergenic 35.0%
TAACATAGAGATCAGGGTAT+GGG + chr5_3:61073338-61073357 None:intergenic 35.0%
TTAACATAGAGATCAGGGTA+TGG + chr5_3:61073339-61073358 None:intergenic 35.0%
GACACATTAACATAGAGATC+AGG + chr5_3:61073345-61073364 None:intergenic 35.0%
TGTCACTACTGATATGGATT+TGG - chr5_3:61073361-61073380 Msa0822680:intron 35.0%
GACATACATGCATATCAGTA+GGG + chr5_3:61073504-61073523 None:intergenic 35.0%
AGACATACATGCATATCAGT+AGG + chr5_3:61073505-61073524 None:intergenic 35.0%
GTCTCAAAGATTCATCTGAA+AGG - chr5_3:61073521-61073540 Msa0822680:intron 35.0%
!! AACAACTATGAGAGCATTTC+TGG - chr5_3:61073618-61073637 Msa0822680:intron 35.0%
CTTCTAGGTTATGAAAGTGA+TGG - chr5_3:61073641-61073660 Msa0822680:CDS 35.0%
! TCAAGTTTTTACCTAAGGGA+AGG + chr5_3:61073736-61073755 None:intergenic 35.0%
CTTCCACCTCTTATAATACT+AGG - chr5_3:61073881-61073900 Msa0822680:five_prime_UTR 35.0%
AATTACCCCATTTACTACCA+AGG - chr5_3:61073993-61074012 Msa0822680:five_prime_UTR 35.0%
TTGAGACACAAGTTCAAGGT+TGG - chr5_3:61071007-61071026 Msa0822680:three_prime_UTR 40.0%
TCTCATGAAGCAAAGTTCCA+TGG - chr5_3:61071218-61071237 Msa0822680:CDS 40.0%
AGAAGTGGTGGTTAGATTGA+TGG + chr5_3:61071247-61071266 None:intergenic 40.0%
! GTTTTCGTGTGAGAAAGGAA+GGG + chr5_3:61071284-61071303 None:intergenic 40.0%
! TGTTTTCGTGTGAGAAAGGA+AGG + chr5_3:61071285-61071304 None:intergenic 40.0%
AGAATCATCCTCAGAAACTC+CGG + chr5_3:61071379-61071398 None:intergenic 40.0%
AAAAGTGGGATAGGAACTGT+TGG + chr5_3:61071418-61071437 None:intergenic 40.0%
! TTGTGGGCTAATTGTATGTC+TGG - chr5_3:61071711-61071730 Msa0822680:intron 40.0%
!!! ACTAGTTTTCTCTTTGGTCC+TGG - chr5_3:61072211-61072230 Msa0822680:intron 40.0%
! GTTCAACTGTTTGTTCTGGA+GGG + chr5_3:61073104-61073123 None:intergenic 40.0%
! TAACCGCATACTTTTCCCAT+TGG + chr5_3:61073394-61073413 None:intergenic 40.0%
! GCTCTTAATTTGATATCGCG+TGG - chr5_3:61073433-61073452 Msa0822680:intron 40.0%
AGTGGTGGTTAGATTGATGG+TGG + chr5_3:61071244-61071263 None:intergenic 45.0%
TGGATGAAGAGAAGAAGTGG+TGG + chr5_3:61071259-61071278 None:intergenic 45.0%
GCTTGGATGAAGAGAAGAAG+TGG + chr5_3:61071262-61071281 None:intergenic 45.0%
CAATCACAAGGGACTGAAAC+CGG - chr5_3:61071357-61071376 Msa0822680:CDS 45.0%
TGGCTCATTTCTCTCCACAA+GGG - chr5_3:61071589-61071608 Msa0822680:intron 45.0%
GAGTGACTAAAGAAACAGCC+AGG + chr5_3:61072232-61072251 None:intergenic 45.0%
ATCTTCTTCTCGTGCACAAC+TGG - chr5_3:61072666-61072685 Msa0822680:intron 45.0%
! TCGTGCACAACTGGATCTTT+TGG - chr5_3:61072675-61072694 Msa0822680:intron 45.0%
TCTACAAGCTCATCAGTCAC+TGG - chr5_3:61072709-61072728 Msa0822680:intron 45.0%
TGAAATCATGTGGTGCGAAG+TGG - chr5_3:61072855-61072874 Msa0822680:intron 45.0%
CAGTTTAGAGATCAGGGCAT+GGG + chr5_3:61073047-61073066 None:intergenic 45.0%
ACAGTTTAGAGATCAGGGCA+TGG + chr5_3:61073048-61073067 None:intergenic 45.0%
GCGGTACAGTTTAGAGATCA+GGG + chr5_3:61073053-61073072 None:intergenic 45.0%
GGTTCAACTGTTTGTTCTGG+AGG + chr5_3:61073105-61073124 None:intergenic 45.0%
TGGTTCGTAGGCACAAAAGA+GGG + chr5_3:61073149-61073168 None:intergenic 45.0%
ATGGTTCGTAGGCACAAAAG+AGG + chr5_3:61073150-61073169 None:intergenic 45.0%
CCATGTTGAGTATGGTTCGT+AGG + chr5_3:61073161-61073180 None:intergenic 45.0%
CCTACGAACCATACTCAACA+TGG - chr5_3:61073158-61073177 Msa0822680:intron 45.0%
GATCAGGGTATGGGAGAAAT+AGG + chr5_3:61073329-61073348 None:intergenic 45.0%
TGGATTTGGATTCCGTCCAA+TGG - chr5_3:61073375-61073394 Msa0822680:intron 45.0%
GGATTTGGATTCCGTCCAAT+GGG - chr5_3:61073376-61073395 Msa0822680:intron 45.0%
! CGCATACTTTTCCCATTGGA+CGG + chr5_3:61073390-61073409 None:intergenic 45.0%
! CGTCCAATGGGAAAAGTATG+CGG - chr5_3:61073388-61073407 Msa0822680:intron 45.0%
!! TGAGAGCATTTCTGGCTTCT+AGG - chr5_3:61073626-61073645 Msa0822680:intron 45.0%
GATGATTTCAGCCTTCCCTT+AGG - chr5_3:61073722-61073741 Msa0822680:CDS 45.0%
! ACAGGCCTTGGTAGTAAATG+GGG + chr5_3:61074001-61074020 None:intergenic 45.0%
! GACAGGCCTTGGTAGTAAAT+GGG + chr5_3:61074002-61074021 None:intergenic 45.0%
! AGACAGGCCTTGGTAGTAAA+TGG + chr5_3:61074003-61074022 None:intergenic 45.0%
!! GGTTAGATTGATGGTGGCCA+TGG + chr5_3:61071238-61071257 None:intergenic 50.0%
GACTGAAACCGGAGTTTCTG+AGG - chr5_3:61071368-61071387 Msa0822680:CDS 50.0%
CTTGTGGAGAGAAATGAGCC+AGG + chr5_3:61071590-61071609 None:intergenic 50.0%
CTGGCTCATTTCTCTCCACA+AGG - chr5_3:61071588-61071607 Msa0822680:intron 50.0%
GGCTCATTTCTCTCCACAAG+GGG - chr5_3:61071590-61071609 Msa0822680:intron 50.0%
GATCAGGGCATGGGAGAAAT+AGG + chr5_3:61073038-61073057 None:intergenic 50.0%
CGCGGTACAGTTTAGAGATC+AGG + chr5_3:61073054-61073073 None:intergenic 50.0%
GATCTCTAAACTGTACCGCG+CGG - chr5_3:61073054-61073073 Msa0822680:intron 50.0%
ATCTCTAAACTGTACCGCGC+GGG - chr5_3:61073055-61073074 Msa0822680:intron 50.0%
!! TTTGTTCTGGAGGGCAACTG+GGG + chr5_3:61073095-61073114 None:intergenic 50.0%
!! GTTTGTTCTGGAGGGCAACT+GGG + chr5_3:61073096-61073115 None:intergenic 50.0%
!! TGTTTGTTCTGGAGGGCAAC+TGG + chr5_3:61073097-61073116 None:intergenic 50.0%
GCAAGGCCCAAATGTGTGTT+AGG + chr5_3:61073126-61073145 None:intergenic 50.0%
GGTTCGTAGGCACAAAAGAG+GGG + chr5_3:61073148-61073167 None:intergenic 50.0%
TTGCGCAGTTGGTTGGAGAA+AGG - chr5_3:61073696-61073715 Msa0822680:CDS 50.0%
TGCGCAGTTGGTTGGAGAAA+GGG - chr5_3:61073697-61073716 Msa0822680:CDS 50.0%
CGTGTGAGAAAGGAAGGGCT+TGG + chr5_3:61071279-61071298 None:intergenic 55.0%
GTAGGCACAAAAGAGGGGCA+AGG + chr5_3:61073143-61073162 None:intergenic 55.0%
GAACAGCTTGCGCAGTTGGT+TGG - chr5_3:61073689-61073708 Msa0822680:CDS 55.0%
TCGCGAACAGCTTGCGCAGT+TGG - chr5_3:61073685-61073704 Msa0822680:CDS 60.0%
TGCAGGTCTGATAGCCCGCG+CGG + chr5_3:61073072-61073091 None:intergenic 65.0%
CTGGAGGGCAACTGGGGTGC+AGG + chr5_3:61073089-61073108 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 61071001 61074043 61071001 ID=Msa0822680;Name=Msa0822680
chr5_3 mRNA 61071001 61074043 61071001 ID=Msa0822680-mRNA-1;Parent=Msa0822680;Name=Msa0822680-mRNA-1;_AED=0.26;_eAED=0.26;_QI=221|1|1|1|1|1|3|100|183
chr5_3 exon 61071001 61071396 61071001 ID=Msa0822680-mRNA-1:exon:18794;Parent=Msa0822680-mRNA-1
chr5_3 exon 61072314 61072385 61072314 ID=Msa0822680-mRNA-1:exon:18793;Parent=Msa0822680-mRNA-1
chr5_3 exon 61073639 61074043 61073639 ID=Msa0822680-mRNA-1:exon:18792;Parent=Msa0822680-mRNA-1
chr5_3 five_prime_UTR 61073823 61074043 61073823 ID=Msa0822680-mRNA-1:five_prime_utr;Parent=Msa0822680-mRNA-1
chr5_3 CDS 61073639 61073822 61073639 ID=Msa0822680-mRNA-1:cds;Parent=Msa0822680-mRNA-1
chr5_3 CDS 61072314 61072385 61072314 ID=Msa0822680-mRNA-1:cds;Parent=Msa0822680-mRNA-1
chr5_3 CDS 61071101 61071396 61071101 ID=Msa0822680-mRNA-1:cds;Parent=Msa0822680-mRNA-1
chr5_3 three_prime_UTR 61071001 61071100 61071001 ID=Msa0822680-mRNA-1:three_prime_utr;Parent=Msa0822680-mRNA-1
Gene Sequence

>Msa0822680

ATGAAGCAAAGTTCCATGGCCACCATCAATCTAACCACCACTTCTTCTCTTCATCCAAGCCCTTCCTTTCTCACACGAAAACATAACAACCTCATCAAATTCAACCATGCTTCTTCTTTAAGCAAAACATGTGCTCAATCACAAGGGACTGAAACCGGAGTTTCTGAGGATGATTCTTCAATTGGATCTTTATCTTCTTCTCGTGCACAACTGGATCTTTTGGAGCAATTTACATCTACAAGCTCATCAGTCACTGGTTATGAAAGTGATGGCAGCTCTCAGAGACTTACAATTCGCGAACAGCTTGCGCAGTTGGTTGGAGAAAGGGATGATGATTTCAGCCTTCCCTTAGGTAAAAACTTGAAGAAAGTGAGTGCAAAGTTCTTAACAACATCACAAAGGAGAAATATCAAGAGACAGAGTTATCTAAATGAAGTGTCTCAAAGGAATGATTCAACTTTTTTCGCAACTATAGGAGCATTTGTACTTCTTCCACCTCTTATAATACTAGGAATAGCTATATTAACTGGTTATGTACAGCTTTTACCTTGA

Protein sequence

>Msa0822680

MKQSSMATINLTTTSSLHPSPSFLTRKHNNLIKFNHASSLSKTCAQSQGTETGVSEDDSSIGSLSSSRAQLDLLEQFTSTSSSVTGYESDGSSQRLTIREQLAQLVGERDDDFSLPLGKNLKKVSAKFLTTSQRRNIKRQSYLNEVSQRNDSTFFATIGAFVLLPPLIILGIAILTGYVQLLP*