AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1387010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387010 MtrunA17_Chr3g0128741 94.700 283 15 0 1 283 1 283 1.96e-169 477
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1387010 AT5G05230.1 50.575 87 39 2 201 283 132 218 2.10e-17 82.0
Msa1387010 AT2G40640.9 70.455 44 13 0 240 283 195 238 3.92e-13 68.9
Msa1387010 AT2G40640.4 70.455 44 13 0 240 283 195 238 3.92e-13 68.9
Msa1387010 AT2G40640.5 70.455 44 13 0 240 283 195 238 3.92e-13 68.9
Msa1387010 AT2G40640.8 70.455 44 13 0 240 283 195 238 3.92e-13 68.9
Msa1387010 AT2G40640.7 70.455 44 13 0 240 283 195 238 6.09e-13 68.6
Msa1387010 AT2G40640.6 70.455 44 13 0 240 283 195 238 6.18e-13 68.6
Msa1387010 AT2G40640.3 70.455 44 13 0 240 283 195 238 6.35e-13 68.6
Msa1387010 AT2G40640.1 70.455 44 13 0 240 283 195 238 7.51e-13 68.9
Msa1387010 AT2G40640.2 70.455 44 13 0 240 283 195 238 8.87e-13 68.6

Find 132 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCCAGCTTCATTCCCCTTA+TGG 0.252570 tig0020873:-73928 Msa1387010:intron
AACTGTGAAGAAAATTAATT+AGG 0.266792 tig0020873:+74430 None:intergenic
AAAATACAGTGGAACTCTTA+TGG 0.270411 tig0020873:-72911 Msa1387010:intron
CACATAGAACAGGGTGGTTT+CGG 0.279836 tig0020873:-70334 Msa1387010:intron
CAGTCAGATTTATATATAAA+TGG 0.301484 tig0020873:-68903 Msa1387010:three_prime_UTR
AAAGGTCAGTCTGAAAATTA+TGG 0.317974 tig0020873:+72797 None:intergenic
AGTTTCCGGTAGAGAGATAC+TGG 0.323986 tig0020873:-73685 Msa1387010:CDS
GTTAACATCAATGATTGAAT+TGG 0.331294 tig0020873:+73984 None:intergenic
CTTCAAGAGACTTACGTAAC+AGG 0.340181 tig0020873:+73396 None:intergenic
CGGCAGATCTGAAGCCAATT+AGG 0.341661 tig0020873:+69174 None:intergenic
GACGGATCGGGTTATCATTA+AGG 0.354561 tig0020873:-70254 Msa1387010:intron
GAAGCATAACGGTGTCGTTT+TGG 0.358709 tig0020873:+74470 None:intergenic
CCAGCAACATGGGACCTAAT+TGG 0.358997 tig0020873:-69188 Msa1387010:three_prime_UTR
ATCTTATCAACCACTTTGTT+CGG 0.362776 tig0020873:-68929 Msa1387010:three_prime_UTR
GAAGAAAATTAATTAGGGTT+TGG 0.366653 tig0020873:+74436 None:intergenic
ATCATAAAATCATTAAAATA+TGG 0.375942 tig0020873:-69145 Msa1387010:three_prime_UTR
GTTGTGTATTCAAGCGAGTC+AGG 0.376422 tig0020873:-73447 Msa1387010:CDS
TACCATAAGGGGAATGAAGC+TGG 0.386178 tig0020873:+73926 None:intergenic
GACAATGGTTGTGGATTTAG+TGG 0.388686 tig0020873:-73480 Msa1387010:CDS
TTACCTTGTGGACATTCATT+TGG 0.393139 tig0020873:-72874 Msa1387010:CDS
TTGCTTTGTTCATACCATAA+GGG 0.401580 tig0020873:+73914 None:intergenic
ACTGTGAAGAAAATTAATTA+GGG 0.407746 tig0020873:+74431 None:intergenic
AAGTCACGAACCATCCATTC+AGG 0.410958 tig0020873:+70077 None:intergenic
CCAATTAGGTCCCATGTTGC+TGG 0.412560 tig0020873:+69188 None:intergenic
ACCCGATCCGTCACAGCAAA+TGG 0.420011 tig0020873:+70265 None:intergenic
AGCACTTCGAGCTGCTGTGC+AGG 0.421181 tig0020873:-70536 Msa1387010:three_prime_UTR
AACGGTGAAGCTCGAATTTG+TGG 0.423301 tig0020873:+74407 None:intergenic
AGGACACCACAACGCTTTGT+TGG 0.424303 tig0020873:-70127 Msa1387010:three_prime_UTR
CAATATGAGTGGTGCTACTA+CGG 0.432371 tig0020873:-73628 Msa1387010:CDS
TTCCATTTGCTGTGACGGAT+CGG 0.436408 tig0020873:-70267 Msa1387010:three_prime_UTR
AATGCTGGTAATGTTACAAA+TGG 0.437119 tig0020873:-73955 Msa1387010:CDS
AATGTTAATAACTATGGATC+TGG 0.438435 tig0020873:-72753 Msa1387010:intron
TCCATTTGCTGTGACGGATC+GGG 0.442401 tig0020873:-70266 Msa1387010:three_prime_UTR
GGTCCCATGTTGCTGGAGAC+AGG 0.445889 tig0020873:+69195 None:intergenic
GTCGATAACACTTCTGCAAA+AGG 0.450894 tig0020873:-69123 Msa1387010:three_prime_UTR
GGACACCACAACGCTTTGTT+GGG 0.454544 tig0020873:-70126 Msa1387010:three_prime_UTR
TGCTGTGCAGGCGTATCGTC+GGG 0.455904 tig0020873:-70524 Msa1387010:three_prime_UTR
CCTTGTGGACATTCATTTGG+TGG 0.461333 tig0020873:-72871 Msa1387010:CDS
TCAATTTCCATTTGCTGTGA+CGG 0.462437 tig0020873:-70272 Msa1387010:three_prime_UTR
AAATGGATCAGGGGAACAAA+AGG 0.462443 tig0020873:-70147 Msa1387010:intron
ACCCGTCAGATGTACTGAAC+TGG 0.468201 tig0020873:-74134 Msa1387010:CDS
CGGCGGTGCACCACCGCGAC+AGG 0.480842 tig0020873:-74280 Msa1387010:CDS
CTCAGGGCACGGAGTTTCGC+CGG 0.481361 tig0020873:-74179 Msa1387010:CDS
GGACATTCATTTGGTGGAGG+TGG 0.484433 tig0020873:-72865 Msa1387010:CDS
CGAGTCAGGGGAGTCGTTGA+GGG 0.484840 tig0020873:-73433 Msa1387010:CDS
TATTATTCACACTATCTTCA+AGG 0.492359 tig0020873:-73543 Msa1387010:CDS
GATGATCAGCGAGAAAGATT+AGG 0.492810 tig0020873:-73600 Msa1387010:CDS
CCATCGGAGTCATTGCTGCT+TGG 0.497591 tig0020873:+74099 None:intergenic
CAACACAATGCCTGAATGGA+TGG 0.499513 tig0020873:-70087 Msa1387010:intron
GATGTTAACAATAATAATGC+TGG 0.499887 tig0020873:-73970 Msa1387010:CDS
TGCTTTGTTCATACCATAAG+GGG 0.500611 tig0020873:+73915 None:intergenic
CATCATGTTATTAGAATGGT+GGG 0.501246 tig0020873:-72838 Msa1387010:CDS
GGTGATACCGTTCCTAAAAC+CGG 0.505411 tig0020873:-74255 Msa1387010:CDS
CTGCTGTGCAGGCGTATCGT+CGG 0.505805 tig0020873:-70525 Msa1387010:three_prime_UTR
TACTTGTTCTCAAGCTACAT+TGG 0.507978 tig0020873:-71024 Msa1387010:three_prime_UTR
CACTATCTTCAAGGTACGGA+AGG 0.509570 tig0020873:-73534 Msa1387010:CDS
TTGTGGATTTAGTGGAAGAA+AGG 0.510052 tig0020873:-73472 Msa1387010:CDS
CAGTTGACAAGTCACAGAAA+AGG 0.517572 tig0020873:+72779 None:intergenic
ACCTTCTGTGCAGAAAGTTA+TGG 0.526285 tig0020873:-73508 Msa1387010:CDS
ATCTTCATCGTCTTCACCAT+CGG 0.526499 tig0020873:+74083 None:intergenic
CTCCAGTTCAGTACATCTGA+CGG 0.528434 tig0020873:+74132 None:intergenic
GCAGTATCGCTCCCTTGCTA+AGG 0.528703 tig0020873:-69238 Msa1387010:three_prime_UTR
AATACATCATGTTATTAGAA+TGG 0.536628 tig0020873:-72842 Msa1387010:CDS
CTTTCCCAGTATCTCTCTAC+CGG 0.538026 tig0020873:+73680 None:intergenic
GTAGACAGACTCGTCGGTGT+TGG 0.539910 tig0020873:-74027 Msa1387010:CDS
ACATCATGTTATTAGAATGG+TGG 0.544455 tig0020873:-72839 Msa1387010:CDS
GTAACAACACAATGCCTGAA+TGG 0.545574 tig0020873:-70091 Msa1387010:three_prime_UTR
TTGTTCTCAAGCTACATTGG+AGG 0.545705 tig0020873:-71021 Msa1387010:three_prime_UTR
TTCACACTATCTTCAAGGTA+CGG 0.547449 tig0020873:-73538 Msa1387010:CDS
AACAAATACAAAGCAGCGCA+AGG 0.553547 tig0020873:+68963 None:intergenic
ATCTGACGGGTTCCCGCGGT+CGG 0.556206 tig0020873:+74146 None:intergenic
ACCATAACTTTCTGCACAGA+AGG 0.558653 tig0020873:+73507 None:intergenic
TGTGGACATTCATTTGGTGG+AGG 0.560085 tig0020873:-72868 Msa1387010:CDS
GCGAGTCAGGGGAGTCGTTG+AGG 0.561751 tig0020873:-73434 Msa1387010:CDS
AAAACCTGTCTCCAGCAACA+TGG 0.562713 tig0020873:-69199 Msa1387010:three_prime_UTR
GTGCTGTTGTTGAATCATCA+AGG 0.563579 tig0020873:-70306 Msa1387010:three_prime_UTR
ACCATAAGGGGAATGAAGCT+GGG 0.569188 tig0020873:+73927 None:intergenic
CCCGATCAAAGAATCGAAAA+CGG 0.571024 tig0020873:-74351 Msa1387010:CDS
TCCAGTTCAGTACATCTGAC+GGG 0.572135 tig0020873:+74133 None:intergenic
TAGACTTATGTACAGGTATG+TGG 0.576592 tig0020873:-69295 Msa1387010:intron
GGATGGTGAAATTGTACAGT+TGG 0.579650 tig0020873:-73658 Msa1387010:CDS
AATATGAGTGGTGCTACTAC+GGG 0.579741 tig0020873:-73627 Msa1387010:CDS
ATGGTGGATGACAATGGTTG+TGG 0.582999 tig0020873:-73489 Msa1387010:CDS
ATCGGAGGACATGGTGCGAA+CGG 0.583443 tig0020873:+74389 None:intergenic
AGAGAGATACTGGGAAAGGA+TGG 0.583968 tig0020873:-73675 Msa1387010:CDS
GCAGGCGTATCGTCGGGAAG+AGG 0.584473 tig0020873:-70518 Msa1387010:three_prime_UTR
TTGTGTATTCAAGCGAGTCA+GGG 0.593300 tig0020873:-73446 Msa1387010:CDS
CGCGCTATCTTGTGTAACAC+TGG 0.595014 tig0020873:+74509 None:intergenic
ACATAGTGCTTGAAGCATAA+CGG 0.596973 tig0020873:+74459 None:intergenic
AAACCTGTCTCCAGCAACAT+GGG 0.597826 tig0020873:-69198 Msa1387010:three_prime_UTR
GGGAGTGAGATTGATGTCAT+CGG 0.603958 tig0020873:+74371 None:intergenic
CGGTAGAGAGATACTGGGAA+AGG 0.605501 tig0020873:-73679 Msa1387010:CDS
ATAAAATACACAACATACAG+TGG 0.608434 tig0020873:+69098 None:intergenic
ATTGATGTCATCGGAGGACA+TGG 0.612204 tig0020873:+74380 None:intergenic
ACGGTATCACCGACCTGTCG+CGG 0.615674 tig0020873:+74267 None:intergenic
AGATGTACTGAACTGGAGCG+AGG 0.621926 tig0020873:-74127 Msa1387010:CDS
ATGAGTGGTGCTACTACGGG+TGG 0.624562 tig0020873:-73624 Msa1387010:CDS
CTGACTGTATCCGAACAAAG+TGG 0.626049 tig0020873:+68919 None:intergenic
CTTATCGTCGATGAAACCGC+CGG 0.628161 tig0020873:+74236 None:intergenic
GGTGCACCACCGCGACAGGT+CGG 0.631302 tig0020873:-74276 Msa1387010:CDS
GAAATACGAGAGGGGAAGTG+AGG 0.632322 tig0020873:+74328 None:intergenic
GTTGAATCATCAAGGGCTAG+AGG 0.634323 tig0020873:-70298 Msa1387010:three_prime_UTR
CCAAGCAGCAATGACTCCGA+TGG 0.635303 tig0020873:-74099 Msa1387010:CDS
AGTCGTCTTGAAATACGAGA+GGG 0.637635 tig0020873:+74319 None:intergenic
ATCGTCGGAAACCTTAGCAA+GGG 0.638576 tig0020873:+69227 None:intergenic
GATCGTCGGAAACCTTAGCA+AGG 0.639407 tig0020873:+69226 None:intergenic
TTCTGTGCAGAAAGTTATGG+TGG 0.640292 tig0020873:-73505 Msa1387010:CDS
TCTCTACGCTTCAACTGCGG+CGG 0.644844 tig0020873:-74297 Msa1387010:CDS
GATGTACTGAACTGGAGCGA+GGG 0.646042 tig0020873:-74126 Msa1387010:CDS
AGACTCGTCGGTGTTGGTGA+CGG 0.651198 tig0020873:-74021 Msa1387010:CDS
TGTGTATTCAAGCGAGTCAG+GGG 0.651377 tig0020873:-73445 Msa1387010:CDS
CCACCAAATGAATGTCCACA+AGG 0.658232 tig0020873:+72871 None:intergenic
ACCGACGAGTCTGTCTACTA+CGG 0.658722 tig0020873:+74032 None:intergenic
TGCTGTTGTTGAATCATCAA+GGG 0.662087 tig0020873:-70305 Msa1387010:three_prime_UTR
GAGTCGTCTTGAAATACGAG+AGG 0.664961 tig0020873:+74318 None:intergenic
GACTCTCTACGCTTCAACTG+CGG 0.667215 tig0020873:-74300 Msa1387010:CDS
GTATCACCGACCTGTCGCGG+TGG 0.672211 tig0020873:+74270 None:intergenic
ACCGTAGTAGACAGACTCGT+CGG 0.674493 tig0020873:-74033 Msa1387010:CDS
ACTATCTTCAAGGTACGGAA+GGG 0.677035 tig0020873:-73533 Msa1387010:CDS
GATGATGAAGACGACGATGG+CGG 0.680112 tig0020873:-74060 Msa1387010:CDS
AGTGAGATTGATGTCATCGG+AGG 0.680550 tig0020873:+74374 None:intergenic
GATGATGATGAAGACGACGA+TGG 0.684420 tig0020873:-74063 Msa1387010:CDS
GTACATCTGACGGGTTCCCG+CGG 0.686515 tig0020873:+74142 None:intergenic
AAAGTTATGGTGGATGACAA+TGG 0.693810 tig0020873:-73495 Msa1387010:CDS
GATGCAATGATATTACCTTG+TGG 0.694719 tig0020873:-72886 Msa1387010:CDS
GTCGTCTTGAAATACGAGAG+GGG 0.702198 tig0020873:+74320 None:intergenic
GTTTCCGGTAGAGAGATACT+GGG 0.706419 tig0020873:-73684 Msa1387010:CDS
GATACCGTTCCTAAAACCGG+CGG 0.712585 tig0020873:-74252 Msa1387010:CDS
TCACGCCCAACAAAGCGTTG+TGG 0.723158 tig0020873:+70121 None:intergenic
GAACTCTGTAACTGACTGCG+AGG 0.732049 tig0020873:-73568 Msa1387010:CDS
TTGGTGCATAACAATATGAG+TGG 0.740163 tig0020873:-73639 Msa1387010:CDS
GGTGAAGACATTAGACAATG+CGG 0.742216 tig0020873:-69274 Msa1387010:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAATTTAAAAATAT+TGG - tig0020873:71793-71812 Msa1387010:intron 0.0%
!! ATAATAAATTTAAAAATATT+GGG - tig0020873:71794-71813 Msa1387010:intron 0.0%
!!! AATTAAAATAAAGATTTTAG+TGG - tig0020873:70039-70058 Msa1387010:intron 10.0%
!! TCAATAATTATATATTACTA+TGG + tig0020873:71683-71702 None:intergenic 10.0%
!! ATCATAAAATCATTAAAATA+TGG - tig0020873:74265-74284 Msa1387010:CDS 10.0%
!! ATTCAATCAAAAACAAAAAA+TGG + tig0020873:70153-70172 None:intergenic 15.0%
!! TTAGCCAAAATTTAAATTAT+AGG + tig0020873:70233-70252 None:intergenic 15.0%
!! AAGAAAATATCAGATATAAA+AGG + tig0020873:70473-70492 None:intergenic 15.0%
!!! AAATTCAATTTTTTCTGTTT+TGG - tig0020873:70781-70800 Msa1387010:intron 15.0%
!!! AATTCAATTTTTTCTGTTTT+GGG - tig0020873:70782-70801 Msa1387010:intron 15.0%
!! TAAGAATCAAATTCTATTTA+TGG - tig0020873:71900-71919 Msa1387010:intron 15.0%
!! TAAATAGAGTAATATTAGTT+AGG + tig0020873:72003-72022 None:intergenic 15.0%
!!! TGTTAATGTAAAATTTTAAC+AGG + tig0020873:72334-72353 None:intergenic 15.0%
!!! ATTTTTTACTTACATAGATT+TGG + tig0020873:72426-72445 None:intergenic 15.0%
!!! CTAATTTAGATTTAGTTTTT+CGG + tig0020873:72766-72785 None:intergenic 15.0%
!! ACTGTGAAGAAAATTAATTA+GGG + tig0020873:68982-69001 None:intergenic 20.0%
!! AACTGTGAAGAAAATTAATT+AGG + tig0020873:68983-69002 None:intergenic 20.0%
!!! CATGTTTAATTGTTTCTTTT+TGG - tig0020873:69686-69705 Msa1387010:intron 20.0%
!!! ATTTTTTGAATTGTAGTTTC+CGG - tig0020873:69711-69730 Msa1387010:intron 20.0%
!!! TAAAGATTTTAGTGGATAAT+AGG - tig0020873:70047-70066 Msa1387010:intron 20.0%
!!! TTTAGTTCTTTTATTGCTAA+TGG - tig0020873:70120-70139 Msa1387010:three_prime_UTR 20.0%
!! AATCAAAAACAAAAAATGGT+AGG + tig0020873:70149-70168 None:intergenic 20.0%
!!! TGCACCTATAATTTAAATTT+TGG - tig0020873:70226-70245 Msa1387010:intron 20.0%
!! TAATATCTTGTATGTTTCTT+GGG - tig0020873:70428-70447 Msa1387010:intron 20.0%
!! AATACATCATGTTATTAGAA+TGG - tig0020873:70568-70587 Msa1387010:intron 20.0%
!! CTGAAAAATGTTAATAACTA+TGG - tig0020873:70651-70670 Msa1387010:intron 20.0%
!! TTGATAAACCTTTATTGAAT+GGG - tig0020873:70867-70886 Msa1387010:intron 20.0%
!! GAAAAAAAAAACCTTTATTG+TGG - tig0020873:71068-71087 Msa1387010:intron 20.0%
!! AAAGAAAAATTGTAGAAACA+TGG + tig0020873:71178-71197 None:intergenic 20.0%
!!! ACATGTTTTATATATGTTTG+AGG - tig0020873:71331-71350 Msa1387010:intron 20.0%
!! AGCATTTGTCTAATTATTAA+TGG - tig0020873:72193-72212 Msa1387010:intron 20.0%
!!! TAATGTAAAATTTTAACAGG+CGG + tig0020873:72331-72350 None:intergenic 20.0%
!!! ATTTCTAATATTTTGATGCT+AGG - tig0020873:72558-72577 Msa1387010:intron 20.0%
!!! AGAAAGTATAATACTTTACT+TGG - tig0020873:72784-72803 Msa1387010:CDS 20.0%
!!! ATACTTTACTTGGTAATATT+TGG - tig0020873:72794-72813 Msa1387010:CDS 20.0%
!!! AATTTTCTGATTTTCTTTCT+GGG - tig0020873:72821-72840 Msa1387010:CDS 20.0%
!!! AAATCTTTCTCTTTTTCTTT+TGG + tig0020873:72939-72958 None:intergenic 20.0%
!! AAATTTACGTATGAAGTAAT+TGG - tig0020873:73235-73254 Msa1387010:intron 20.0%
!! TAGTAGTTAATATCAAATCT+TGG - tig0020873:73372-73391 Msa1387010:intron 20.0%
!! AGTAGTTAATATCAAATCTT+GGG - tig0020873:73373-73392 Msa1387010:intron 20.0%
!!! TTTAATAGCATTATCTTTTG+AGG - tig0020873:73552-73571 Msa1387010:CDS 20.0%
!!! GTACTATTTTTATTTCAAAG+TGG + tig0020873:73595-73614 None:intergenic 20.0%
!!! TTGATTTTTGCTTATAATAG+TGG - tig0020873:73952-73971 Msa1387010:CDS 20.0%
!! ATGTGTACATAAGTTATTAA+TGG + tig0020873:74066-74085 None:intergenic 20.0%
!! GTACATAAGTCTAATATTAA+TGG + tig0020873:74108-74127 None:intergenic 20.0%
!! TTAATATTAGACTTATGTAC+AGG - tig0020873:74108-74127 Msa1387010:CDS 20.0%
!! CAGTCAGATTTATATATAAA+TGG - tig0020873:74507-74526 Msa1387010:five_prime_UTR 20.0%
! GAAGAAAATTAATTAGGGTT+TGG + tig0020873:68977-68996 None:intergenic 25.0%
! GTTAACATCAATGATTGAAT+TGG + tig0020873:69429-69448 None:intergenic 25.0%
! GATGTTAACAATAATAATGC+TGG - tig0020873:69440-69459 Msa1387010:intron 25.0%
! TGTCTTTATTAGTGCTTTAT+AGG - tig0020873:69625-69644 Msa1387010:intron 25.0%
! TATTATTCACACTATCTTCA+AGG - tig0020873:69867-69886 Msa1387010:intron 25.0%
!! GTTGAAAACAAGAATTTTAC+AGG + tig0020873:70194-70213 None:intergenic 25.0%
! TTAAATAACTTAAAGACCTC+TGG + tig0020873:70261-70280 None:intergenic 25.0%
!! GTTTTTGTTCTTGATTAAGA+GGG + tig0020873:70320-70339 None:intergenic 25.0%
! CTAATATCTTGTATGTTTCT+TGG - tig0020873:70427-70446 Msa1387010:intron 25.0%
!! TTCTTCTTCTAAAAATACAG+TGG - tig0020873:70488-70507 Msa1387010:three_prime_UTR 25.0%
!! TGAAAATTATGGCATTTTGA+TGG + tig0020873:70605-70624 None:intergenic 25.0%
! AATGTTAATAACTATGGATC+TGG - tig0020873:70657-70676 Msa1387010:intron 25.0%
! ATAATGGCATTAGTAATGTT+GGG + tig0020873:70740-70759 None:intergenic 25.0%
! AAACAAATACTGATGCATAA+TGG + tig0020873:70756-70775 None:intergenic 25.0%
!! GATCAACGTTGATTAAAATT+CGG + tig0020873:70818-70837 None:intergenic 25.0%
!! GTTGATAAACCTTTATTGAA+TGG - tig0020873:70866-70885 Msa1387010:intron 25.0%
! TGATAAACCTTTATTGAATG+GGG - tig0020873:70868-70887 Msa1387010:intron 25.0%
! GTATGCTATGTTGTTAATAA+CGG - tig0020873:70900-70919 Msa1387010:intron 25.0%
! TAAAAATGTAAAAGAAGCAG+CGG - tig0020873:71300-71319 Msa1387010:intron 25.0%
!! TATTAACGAAATGATTTTGC+AGG - tig0020873:71542-71561 Msa1387010:intron 25.0%
!!! TCTTTTGATTAGGCTAATAT+TGG - tig0020873:71570-71589 Msa1387010:intron 25.0%
! TATCATTAAGAAGAGAAAGT+AGG + tig0020873:71747-71766 None:intergenic 25.0%
! ACTTTCTCTTCTTAATGATA+AGG - tig0020873:71747-71766 Msa1387010:intron 25.0%
! TTTGATTCTTACAAGTATAC+AGG + tig0020873:71891-71910 None:intergenic 25.0%
! AATTCTATTTATGGTTCTTG+AGG - tig0020873:71909-71928 Msa1387010:intron 25.0%
!! GGTTTTACTTATATTAAGAC+TGG + tig0020873:71982-72001 None:intergenic 25.0%
!!! CGAGTACATGTTTTATTTAA+TGG + tig0020873:72046-72065 None:intergenic 25.0%
! TCGTACAAAAGTAAATGATA+AGG - tig0020873:72063-72082 Msa1387010:intron 25.0%
! TAACAAACTACGCTTATATT+AGG + tig0020873:72147-72166 None:intergenic 25.0%
!! TAATTAGACAAATGCTTTTG+CGG + tig0020873:72189-72208 None:intergenic 25.0%
! AAAGTTGAATGACTGTTAAT+AGG - tig0020873:72221-72240 Msa1387010:intron 25.0%
! AAGTTGAATGACTGTTAATA+GGG - tig0020873:72222-72241 Msa1387010:intron 25.0%
! TTCATTTGCTTGTATATGTT+TGG - tig0020873:72249-72268 Msa1387010:intron 25.0%
!! CAATTTTCTGATTTTCTTTC+TGG - tig0020873:72820-72839 Msa1387010:CDS 25.0%
! AAAAAGAGAAAGATTTGATC+AGG - tig0020873:72943-72962 Msa1387010:intron 25.0%
! AGATATATTTCACATAGAAC+AGG - tig0020873:73066-73085 Msa1387010:intron 25.0%
! GATATATTTCACATAGAACA+GGG - tig0020873:73067-73086 Msa1387010:intron 25.0%
! TGAAGTAATTGGAGAAAAAA+TGG - tig0020873:73246-73265 Msa1387010:intron 25.0%
!!! CCAATATTCACTATTTTTCT+AGG + tig0020873:73704-73723 None:intergenic 25.0%
! CCTAGAAAAATAGTGAATAT+TGG - tig0020873:73701-73720 Msa1387010:intron 25.0%
! TAAACTTAATAGCACATTTG+CGG - tig0020873:73750-73769 Msa1387010:intron 25.0%
! AAATTAATACATACATCCTC+CGG - tig0020873:73825-73844 Msa1387010:intron 25.0%
! CATTCATTAAATGATGTATG+TGG + tig0020873:73921-73940 None:intergenic 25.0%
! CACATACATCATTTAATGAA+TGG - tig0020873:73919-73938 Msa1387010:intron 25.0%
!! AATGATTTTATGATGTTGTG+CGG + tig0020873:74259-74278 None:intergenic 25.0%
! ATAAAATACACAACATACAG+TGG + tig0020873:74315-74334 None:intergenic 25.0%
!! CTGTATGTTGTGTATTTTAT+TGG - tig0020873:74315-74334 Msa1387010:CDS 25.0%
! AATGCTGGTAATGTTACAAA+TGG - tig0020873:69455-69474 Msa1387010:intron 30.0%
! TTGCTTTGTTCATACCATAA+GGG + tig0020873:69499-69518 None:intergenic 30.0%
! TTTGCTTTGTTCATACCATA+AGG + tig0020873:69500-69519 None:intergenic 30.0%
! GGTTTTTGTTCTTGATTAAG+AGG + tig0020873:70321-70340 None:intergenic 30.0%
CTTAATCAAGAACAAAAACC+AGG - tig0020873:70321-70340 Msa1387010:three_prime_UTR 30.0%
TATACTGGAAAATTAAGGAG+AGG + tig0020873:70385-70404 None:intergenic 30.0%
! TCTCCTTAATTTTCCAGTAT+AGG - tig0020873:70384-70403 Msa1387010:intron 30.0%
! CTCCTTAATTTTCCAGTATA+GGG - tig0020873:70385-70404 Msa1387010:intron 30.0%
ATCCCTATACTGGAAAATTA+AGG + tig0020873:70390-70409 None:intergenic 30.0%
AAAATACAGTGGAACTCTTA+TGG - tig0020873:70499-70518 Msa1387010:three_prime_UTR 30.0%
ACATCATGTTATTAGAATGG+TGG - tig0020873:70571-70590 Msa1387010:intron 30.0%
CATCATGTTATTAGAATGGT+GGG - tig0020873:70572-70591 Msa1387010:intron 30.0%
AAAGGTCAGTCTGAAAATTA+TGG + tig0020873:70616-70635 None:intergenic 30.0%
CATAATGGCATTAGTAATGT+TGG + tig0020873:70741-70760 None:intergenic 30.0%
!!! CAATTTTTTCTGTTTTGGGA+AGG - tig0020873:70786-70805 Msa1387010:intron 30.0%
GTAAATAGAACACTATTGCA+TGG - tig0020873:70922-70941 Msa1387010:intron 30.0%
AGAACATAAGAACACAATGA+TGG + tig0020873:70960-70979 None:intergenic 30.0%
ATTCATGAAAACAGATGATG+TGG + tig0020873:71011-71030 None:intergenic 30.0%
ATATATGTTTGAGGAGTGAT+AGG - tig0020873:71340-71359 Msa1387010:intron 30.0%
! CTCTTTTCAACATTTTCACT+GGG + tig0020873:71430-71449 None:intergenic 30.0%
! ACTCTTTTCAACATTTTCAC+TGG + tig0020873:71431-71450 None:intergenic 30.0%
AACACCCTAAAACATATTGT+GGG + tig0020873:71465-71484 None:intergenic 30.0%
GCTAATATTGGACATGAATA+TGG - tig0020873:71582-71601 Msa1387010:intron 30.0%
ACAGTCTATGTTGTAAATCT+AGG + tig0020873:71840-71859 None:intergenic 30.0%
TAGATAATTCAAAGTTGACC+TGG - tig0020873:71937-71956 Msa1387010:intron 30.0%
AGATAATTCAAAGTTGACCT+GGG - tig0020873:71938-71957 Msa1387010:intron 30.0%
! AATTAGACAAATGCTTTTGC+GGG + tig0020873:72188-72207 None:intergenic 30.0%
TTTCTACAGCATCATACTAT+CGG + tig0020873:72287-72306 None:intergenic 30.0%
AACTCTTCTCAAATAAGATG+TGG - tig0020873:72459-72478 Msa1387010:intron 30.0%
ACTTCAAAAGAAAAAAGGAG+GGG + tig0020873:72676-72695 None:intergenic 30.0%
CACTTCAAAAGAAAAAAGGA+GGG + tig0020873:72677-72696 None:intergenic 30.0%
AGTGCACTTCAAAAGAAAAA+AGG + tig0020873:72681-72700 None:intergenic 30.0%
ATATATCCACTATACTGCAA+AGG - tig0020873:72703-72722 Msa1387010:intron 30.0%
TATATCCACTATACTGCAAA+GGG - tig0020873:72704-72723 Msa1387010:intron 30.0%
! CTTTACTTGGTAATATTTGG+TGG - tig0020873:72797-72816 Msa1387010:CDS 30.0%
! AAGAGGAATCACAATTTTAC+CGG - tig0020873:72909-72928 Msa1387010:intron 30.0%
AAAAAATAAGAGAGACGACA+AGG + tig0020873:73042-73061 None:intergenic 30.0%
AATTGGAGAAAAAATGGATC+AGG - tig0020873:73252-73271 Msa1387010:intron 30.0%
ATTGGAGAAAAAATGGATCA+GGG - tig0020873:73253-73272 Msa1387010:intron 30.0%
TTTATTTCAAAGTGGCATCT+TGG + tig0020873:73587-73606 None:intergenic 30.0%
AAATGTGTTGTGCTAGTAAA+AGG + tig0020873:73627-73646 None:intergenic 30.0%
! TTTTACTAGCACAACACATT+TGG - tig0020873:73626-73645 Msa1387010:CDS 30.0%
TTTACTAGCACAACACATTT+GGG - tig0020873:73627-73646 Msa1387010:CDS 30.0%
AAACTTAATAGCACATTTGC+GGG - tig0020873:73751-73770 Msa1387010:intron 30.0%
AATAACTACATGTGTTGTGA+TGG - tig0020873:73786-73805 Msa1387010:intron 30.0%
AATTAATACATACATCCTCC+GGG - tig0020873:73826-73845 Msa1387010:intron 30.0%
! ATTTTGCTTATAATAGTGCC+CGG + tig0020873:73847-73866 None:intergenic 30.0%
! TGCTTATAATAGTGGAAACA+CGG - tig0020873:73960-73979 Msa1387010:CDS 30.0%
ATCTTATCAACCACTTTGTT+CGG - tig0020873:74481-74500 Msa1387010:five_prime_UTR 30.0%
ACATAGTGCTTGAAGCATAA+CGG + tig0020873:68954-68973 None:intergenic 35.0%
GAAAAACTGATCACGATTGA+CGG + tig0020873:69207-69226 None:intergenic 35.0%
! TGATCAGTTTTTCACTTCTC+AGG - tig0020873:69214-69233 Msa1387010:three_prime_UTR 35.0%
! GATCAGTTTTTCACTTCTCA+GGG - tig0020873:69215-69234 Msa1387010:three_prime_UTR 35.0%
! TGCTTTGTTCATACCATAAG+GGG + tig0020873:69498-69517 None:intergenic 35.0%
TTGGTGCATAACAATATGAG+TGG - tig0020873:69771-69790 Msa1387010:intron 35.0%
TTCACACTATCTTCAAGGTA+CGG - tig0020873:69872-69891 Msa1387010:intron 35.0%
!! AAAGTTATGGTGGATGACAA+TGG - tig0020873:69915-69934 Msa1387010:intron 35.0%
TTGTGGATTTAGTGGAAGAA+AGG - tig0020873:69938-69957 Msa1387010:intron 35.0%
!!! ATTTTGGCTAAATACACCAG+AGG - tig0020873:70242-70261 Msa1387010:intron 35.0%
! TTATTCTGTTTTGCATCACC+TGG + tig0020873:70342-70361 None:intergenic 35.0%
GATGCAATGATATTACCTTG+TGG - tig0020873:70524-70543 Msa1387010:three_prime_UTR 35.0%
TTACCTTGTGGACATTCATT+TGG - tig0020873:70536-70555 Msa1387010:three_prime_UTR 35.0%
!!! TTTTTCTGTTTTGGGAAGGT+AGG - tig0020873:70790-70809 Msa1387010:intron 35.0%
ACGTTGATCAAAAGTTCAAG+TGG - tig0020873:70829-70848 Msa1387010:intron 35.0%
GATGCAAATTGCCACAATAA+AGG + tig0020873:71082-71101 None:intergenic 35.0%
ACACCCTAAAACATATTGTG+GGG + tig0020873:71464-71483 None:intergenic 35.0%
GAACACCCTAAAACATATTG+TGG + tig0020873:71466-71485 None:intergenic 35.0%
!!! CAATATGTTTTAGGGTGTTC+AGG - tig0020873:71466-71485 Msa1387010:intron 35.0%
GTTAATACTTGATACAACCC+TGG + tig0020873:71529-71548 None:intergenic 35.0%
ATGCAAGCACACATATAGAA+TGG - tig0020873:71717-71736 Msa1387010:intron 35.0%
CTCTTCTTAATGATAAGGAC+AGG - tig0020873:71752-71771 Msa1387010:intron 35.0%
TCTTAATGATAAGGACAGGA+AGG - tig0020873:71756-71775 Msa1387010:intron 35.0%
ACGCTTATATTAGGAGTAGT+AGG + tig0020873:72138-72157 None:intergenic 35.0%
GCTTGTATATGTTTGGATTG+TGG - tig0020873:72256-72275 Msa1387010:intron 35.0%
! GATGCTGTAGAAATTTTCAG+AGG - tig0020873:72294-72313 Msa1387010:intron 35.0%
TACTTGTTCTCAAGCTACAT+TGG - tig0020873:72386-72405 Msa1387010:intron 35.0%
GCACTTCAAAAGAAAAAAGG+AGG + tig0020873:72678-72697 None:intergenic 35.0%
! CTCTTTTTCTTTTGGATGAC+CGG + tig0020873:72931-72950 None:intergenic 35.0%
TTCCTTTCATGATTGTGCAA+TGG + tig0020873:72978-72997 None:intergenic 35.0%
AGGAAAATTAGTAACCACCT+AGG - tig0020873:72993-73012 Msa1387010:intron 35.0%
ATATTTCACATAGAACAGGG+TGG - tig0020873:73070-73089 Msa1387010:intron 35.0%
TGCTGTTGTTGAATCATCAA+GGG - tig0020873:73105-73124 Msa1387010:intron 35.0%
!! TCAATTTCCATTTGCTGTGA+CGG - tig0020873:73138-73157 Msa1387010:intron 35.0%
TTGGAGAAAAAATGGATCAG+GGG - tig0020873:73254-73273 Msa1387010:intron 35.0%
TAGACTTATGTACAGGTATG+TGG - tig0020873:74115-74134 Msa1387010:CDS 35.0%
! TCGCTAAGAAATTTTGTTCG+TGG + tig0020873:74346-74365 None:intergenic 35.0%
! CCGTTTTCGATTCTTTGATC+GGG + tig0020873:69062-69081 None:intergenic 40.0%
CCCGATCAAAGAATCGAAAA+CGG - tig0020873:69059-69078 Msa1387010:three_prime_UTR 40.0%
!! GCCGTTTTCGATTCTTTGAT+CGG + tig0020873:69063-69082 None:intergenic 40.0%
AGTCGTCTTGAAATACGAGA+GGG + tig0020873:69094-69113 None:intergenic 40.0%
ATCTTCATCGTCTTCACCAT+CGG + tig0020873:69330-69349 None:intergenic 40.0%
CAACATGTCATTGTCGTGTT+CGG - tig0020873:69599-69618 Msa1387010:intron 40.0%
GGATGGTGAAATTGTACAGT+TGG - tig0020873:69752-69771 Msa1387010:intron 40.0%
!! CAATATGAGTGGTGCTACTA+CGG - tig0020873:69782-69801 Msa1387010:intron 40.0%
!! AATATGAGTGGTGCTACTAC+GGG - tig0020873:69783-69802 Msa1387010:intron 40.0%
GATGATCAGCGAGAAAGATT+AGG - tig0020873:69810-69829 Msa1387010:intron 40.0%
ACTATCTTCAAGGTACGGAA+GGG - tig0020873:69877-69896 Msa1387010:intron 40.0%
ACCTTCTGTGCAGAAAGTTA+TGG - tig0020873:69902-69921 Msa1387010:intron 40.0%
ACCATAACTTTCTGCACAGA+AGG + tig0020873:69906-69925 None:intergenic 40.0%
TTCTGTGCAGAAAGTTATGG+TGG - tig0020873:69905-69924 Msa1387010:intron 40.0%
GACAATGGTTGTGGATTTAG+TGG - tig0020873:69930-69949 Msa1387010:intron 40.0%
TTGTGTATTCAAGCGAGTCA+GGG - tig0020873:69964-69983 Msa1387010:intron 40.0%
CTTCAAGAGACTTACGTAAC+AGG + tig0020873:70017-70036 None:intergenic 40.0%
! AGAATTTTACAGGCCATTGC+AGG + tig0020873:70184-70203 None:intergenic 40.0%
TTCCAGTATAGGGATCACAT+AGG - tig0020873:70395-70414 Msa1387010:intron 40.0%
AACCTATGTGATCCCTATAC+TGG + tig0020873:70400-70419 None:intergenic 40.0%
CAGTTGACAAGTCACAGAAA+AGG + tig0020873:70634-70653 None:intergenic 40.0%
TGTCGATCCCCATTCAATAA+AGG + tig0020873:70878-70897 None:intergenic 40.0%
TTCTCTTGTGCCTCGTATAT+GGG - tig0020873:70976-70995 Msa1387010:intron 40.0%
GGAAAGCAAAAATCCCAGAA+GGG - tig0020873:71133-71152 Msa1387010:intron 40.0%
GAAAGCAAAAATCCCAGAAG+GGG - tig0020873:71134-71153 Msa1387010:intron 40.0%
AAAGCAAAAATCCCAGAAGG+GGG - tig0020873:71135-71154 Msa1387010:intron 40.0%
CATTGAGGATTGAGTATGCA+AGG + tig0020873:71201-71220 None:intergenic 40.0%
ATAGGAACACTCTCTTTCAC+TGG - tig0020873:71358-71377 Msa1387010:intron 40.0%
TAGGAACACTCTCTTTCACT+GGG - tig0020873:71359-71378 Msa1387010:intron 40.0%
TTCACTGGGCAAAATCAATG+TGG - tig0020873:71373-71392 Msa1387010:intron 40.0%
AAATCAATGTGGATCCCACA+TGG + tig0020873:71405-71424 None:intergenic 40.0%
TTCACTGGGCAAAATCAATG+TGG + tig0020873:71373-71392 None:intergenic 40.0%
! AGCACCCCACAATATGTTTT+AGG - tig0020873:71457-71476 Msa1387010:intron 40.0%
! GCACCCCACAATATGTTTTA+GGG - tig0020873:71458-71477 Msa1387010:intron 40.0%
TTTGTTGACCGATATCTTCC+AGG - tig0020873:71508-71527 Msa1387010:intron 40.0%
TTGTTGACCGATATCTTCCA+GGG - tig0020873:71509-71528 Msa1387010:intron 40.0%
GATACAACCCTGGAAGATAT+CGG + tig0020873:71519-71538 None:intergenic 40.0%
!! GCAGGATTGCTCTTTTGATT+AGG - tig0020873:71560-71579 Msa1387010:intron 40.0%
ATTAAGACTGGAGTAGTGCA+TGG + tig0020873:71970-71989 None:intergenic 40.0%
TTGTTCTCAAGCTACATTGG+AGG - tig0020873:72389-72408 Msa1387010:intron 40.0%
CTCCATTGCACAATCATGAA+AGG - tig0020873:72973-72992 Msa1387010:intron 40.0%
ATAAGTAACTTGAGCAGCCT+AGG + tig0020873:73013-73032 None:intergenic 40.0%
! GTGCTGTTGTTGAATCATCA+AGG - tig0020873:73104-73123 Msa1387010:intron 40.0%
AAATGGATCAGGGGAACAAA+AGG - tig0020873:73263-73282 Msa1387010:intron 40.0%
GTAACAACACAATGCCTGAA+TGG - tig0020873:73319-73338 Msa1387010:intron 40.0%
ACTGATCTGATAGAATCCAG+TGG - tig0020873:73453-73472 Msa1387010:CDS 40.0%
! CTTGAAAGCACATTCAGGAA+TGG + tig0020873:74020-74039 None:intergenic 40.0%
CATTCCTGAATGTGCTTTCA+AGG - tig0020873:74018-74037 Msa1387010:CDS 40.0%
GGTGAAGACATTAGACAATG+CGG - tig0020873:74136-74155 Msa1387010:CDS 40.0%
GTCGATAACACTTCTGCAAA+AGG - tig0020873:74287-74306 Msa1387010:CDS 40.0%
AACAAATACAAAGCAGCGCA+AGG + tig0020873:74450-74469 None:intergenic 40.0%
!!! GAAGCATAACGGTGTCGTTT+TGG + tig0020873:68943-68962 None:intergenic 45.0%
AACGGTGAAGCTCGAATTTG+TGG + tig0020873:69006-69025 None:intergenic 45.0%
ATTGATGTCATCGGAGGACA+TGG + tig0020873:69033-69052 None:intergenic 45.0%
AGTGAGATTGATGTCATCGG+AGG + tig0020873:69039-69058 None:intergenic 45.0%
GGGAGTGAGATTGATGTCAT+CGG + tig0020873:69042-69061 None:intergenic 45.0%
GTCGTCTTGAAATACGAGAG+GGG + tig0020873:69093-69112 None:intergenic 45.0%
GAGTCGTCTTGAAATACGAG+AGG + tig0020873:69095-69114 None:intergenic 45.0%
GGTGATACCGTTCCTAAAAC+CGG - tig0020873:69155-69174 Msa1387010:three_prime_UTR 45.0%
! GTTTTTCACTTCTCAGGGCA+CGG - tig0020873:69220-69239 Msa1387010:three_prime_UTR 45.0%
TCCAGTTCAGTACATCTGAC+GGG + tig0020873:69280-69299 None:intergenic 45.0%
CTCCAGTTCAGTACATCTGA+CGG + tig0020873:69281-69300 None:intergenic 45.0%
! GATGATGATGAAGACGACGA+TGG - tig0020873:69347-69366 Msa1387010:intron 45.0%
ACCATAAGGGGAATGAAGCT+GGG + tig0020873:69486-69505 None:intergenic 45.0%
TACCATAAGGGGAATGAAGC+TGG + tig0020873:69487-69506 None:intergenic 45.0%
AGTTTCCGGTAGAGAGATAC+TGG - tig0020873:69725-69744 Msa1387010:intron 45.0%
GTTTCCGGTAGAGAGATACT+GGG - tig0020873:69726-69745 Msa1387010:intron 45.0%
CTTTCCCAGTATCTCTCTAC+CGG + tig0020873:69733-69752 None:intergenic 45.0%
AGAGAGATACTGGGAAAGGA+TGG - tig0020873:69735-69754 Msa1387010:intron 45.0%
CACTATCTTCAAGGTACGGA+AGG - tig0020873:69876-69895 Msa1387010:intron 45.0%
!! ATGGTGGATGACAATGGTTG+TGG - tig0020873:69921-69940 Msa1387010:intron 45.0%
GTTGTGTATTCAAGCGAGTC+AGG - tig0020873:69963-69982 Msa1387010:intron 45.0%
TGTGTATTCAAGCGAGTCAG+GGG - tig0020873:69965-69984 Msa1387010:intron 45.0%
TGAATCGAGTTTGCCTGCAA+TGG - tig0020873:70168-70187 Msa1387010:intron 45.0%
CCACCAAATGAATGTCCACA+AGG + tig0020873:70542-70561 None:intergenic 45.0%
CCTTGTGGACATTCATTTGG+TGG - tig0020873:70539-70558 Msa1387010:intron 45.0%
! TGTGGACATTCATTTGGTGG+AGG - tig0020873:70542-70561 Msa1387010:intron 45.0%
TATGCCTCCATACCGTAGAA+TGG - tig0020873:70707-70726 Msa1387010:intron 45.0%
AGAACACTATTGCATGGAGC+CGG - tig0020873:70928-70947 Msa1387010:intron 45.0%
GTTCTCTTGTGCCTCGTATA+TGG - tig0020873:70975-70994 Msa1387010:intron 45.0%
GGCAATTTGCATCCAAAGTG+AGG - tig0020873:71089-71108 Msa1387010:intron 45.0%
GGGAAAGCAAAAATCCCAGA+AGG - tig0020873:71132-71151 Msa1387010:intron 45.0%
CAATCCTCAATGACAGAGCT+TGG - tig0020873:71209-71228 Msa1387010:intron 45.0%
! TGTTCAGGTGTTGTGACTTG+CGG - tig0020873:71481-71500 Msa1387010:intron 45.0%
ATCTGCCCTTTGCAGTATAG+TGG + tig0020873:72712-72731 None:intergenic 45.0%
!! CTTTCTGGGATTTCTTCCTG+TGG - tig0020873:72835-72854 Msa1387010:CDS 45.0%
CACATAGAACAGGGTGGTTT+CGG - tig0020873:73076-73095 Msa1387010:intron 45.0%
GTTGAATCATCAAGGGCTAG+AGG - tig0020873:73112-73131 Msa1387010:intron 45.0%
!! TTCCATTTGCTGTGACGGAT+CGG - tig0020873:73143-73162 Msa1387010:intron 45.0%
GACGGATCGGGTTATCATTA+AGG - tig0020873:73156-73175 Msa1387010:intron 45.0%
CAACACAATGCCTGAATGGA+TGG - tig0020873:73323-73342 Msa1387010:intron 45.0%
AAGTCACGAACCATCCATTC+AGG + tig0020873:73336-73355 None:intergenic 45.0%
ACAATGAAGTTCGCTTCCAC+TGG + tig0020873:73472-73491 None:intergenic 45.0%
! CACATTTGCGGGTTAAGACT+TGG - tig0020873:73762-73781 Msa1387010:intron 45.0%
TTGCTTATAATAGTGCCCGG+AGG + tig0020873:73844-73863 None:intergenic 45.0%
! AGCTCCTTGAAAGCACATTC+AGG + tig0020873:74025-74044 None:intergenic 45.0%
ATCGTCGGAAACCTTAGCAA+GGG + tig0020873:74186-74205 None:intergenic 45.0%
!!! GACAGGTTTTGAAGGATCGT+CGG + tig0020873:74201-74220 None:intergenic 45.0%
!! TTGCTGGAGACAGGTTTTGA+AGG + tig0020873:74209-74228 None:intergenic 45.0%
AAAACCTGTCTCCAGCAACA+TGG - tig0020873:74211-74230 Msa1387010:CDS 45.0%
AAACCTGTCTCCAGCAACAT+GGG - tig0020873:74212-74231 Msa1387010:CDS 45.0%
CTGACTGTATCCGAACAAAG+TGG + tig0020873:74494-74513 None:intergenic 45.0%
!! TAATAAATTTAAAAATATTG+GGG - tig0020873:71795-71814 Msa1387010:intron 5.0%
CGCGCTATCTTGTGTAACAC+TGG + tig0020873:68904-68923 None:intergenic 50.0%
GAAATACGAGAGGGGAAGTG+AGG + tig0020873:69085-69104 None:intergenic 50.0%
GACTCTCTACGCTTCAACTG+CGG - tig0020873:69110-69129 Msa1387010:three_prime_UTR 50.0%
GATACCGTTCCTAAAACCGG+CGG - tig0020873:69158-69177 Msa1387010:three_prime_UTR 50.0%
!!! GAAACCGCCGGTTTTAGGAA+CGG + tig0020873:69165-69184 None:intergenic 50.0%
!!! TCGATGAAACCGCCGGTTTT+AGG + tig0020873:69170-69189 None:intergenic 50.0%
CTTATCGTCGATGAAACCGC+CGG + tig0020873:69177-69196 None:intergenic 50.0%
CGCGGTCGGAAAAAACATTC+CGG + tig0020873:69253-69272 None:intergenic 50.0%
!!! CGGAATGTTTTTTCCGACCG+CGG - tig0020873:69251-69270 Msa1387010:three_prime_UTR 50.0%
!!! GGAATGTTTTTTCCGACCGC+GGG - tig0020873:69252-69271 Msa1387010:three_prime_UTR 50.0%
ACCCGTCAGATGTACTGAAC+TGG - tig0020873:69276-69295 Msa1387010:three_prime_UTR 50.0%
AGATGTACTGAACTGGAGCG+AGG - tig0020873:69283-69302 Msa1387010:three_prime_UTR 50.0%
GATGTACTGAACTGGAGCGA+GGG - tig0020873:69284-69303 Msa1387010:intron 50.0%
GATGATGAAGACGACGATGG+CGG - tig0020873:69350-69369 Msa1387010:intron 50.0%
ACCGTAGTAGACAGACTCGT+CGG - tig0020873:69377-69396 Msa1387010:intron 50.0%
ACCGACGAGTCTGTCTACTA+CGG + tig0020873:69381-69400 None:intergenic 50.0%
TCCCAGCTTCATTCCCCTTA+TGG - tig0020873:69482-69501 Msa1387010:intron 50.0%
CGGTAGAGAGATACTGGGAA+AGG - tig0020873:69731-69750 Msa1387010:intron 50.0%
GAACTCTGTAACTGACTGCG+AGG - tig0020873:69842-69861 Msa1387010:intron 50.0%
! GGACATTCATTTGGTGGAGG+TGG - tig0020873:70545-70564 Msa1387010:intron 50.0%
AGTCCTGCCATTCTACGGTA+TGG + tig0020873:70717-70736 None:intergenic 50.0%
TTGGGAGTCCTGCCATTCTA+CGG + tig0020873:70722-70741 None:intergenic 50.0%
GAACACTATTGCATGGAGCC+GGG - tig0020873:70929-70948 Msa1387010:intron 50.0%
AACACAATGATGGCAACGCC+CGG + tig0020873:70950-70969 None:intergenic 50.0%
CTTGTGCCTCGTATATGGGA+TGG - tig0020873:70980-70999 Msa1387010:intron 50.0%
TGCTCTGCAGCACTTCAACA+AGG - tig0020873:71032-71051 Msa1387010:three_prime_UTR 50.0%
TCTGCAGCACTTCAACAAGG+AGG - tig0020873:71035-71054 Msa1387010:three_prime_UTR 50.0%
CAAAAATCCCAGAAGGGGGT+GGG - tig0020873:71139-71158 Msa1387010:intron 50.0%
AAAAATCCCAGAAGGGGGTG+GGG - tig0020873:71140-71159 Msa1387010:intron 50.0%
CCTCAATGACAGAGCTTGGT+CGG - tig0020873:71213-71232 Msa1387010:intron 50.0%
TATCCTCCCACCTTGTCTTG+CGG + tig0020873:71253-71272 None:intergenic 50.0%
TCAATGTGGATCCCACCATG+TGG - tig0020873:71387-71406 Msa1387010:intron 50.0%
CAATGTGGATCCCACCATGT+GGG - tig0020873:71388-71407 Msa1387010:intron 50.0%
CAATGTGGATCCCACATGGT+GGG + tig0020873:71401-71420 None:intergenic 50.0%
TCAATGTGGATCCCACATGG+TGG + tig0020873:71402-71421 None:intergenic 50.0%
CTAGGAAAGCAACACAGAGC+AGG + tig0020873:71822-71841 None:intergenic 50.0%
GTAGTGCATGGCAATTTCCC+AGG + tig0020873:71958-71977 None:intergenic 50.0%
GGGATTTCTTCCTGTGGTAC+TGG - tig0020873:72841-72860 Msa1387010:CDS 50.0%
AGTAACTTGAGCAGCCTAGG+TGG + tig0020873:73010-73029 None:intergenic 50.0%
!! TCCATTTGCTGTGACGGATC+GGG - tig0020873:73144-73163 Msa1387010:intron 50.0%
AGGACACCACAACGCTTTGT+TGG - tig0020873:73283-73302 Msa1387010:intron 50.0%
! GGACACCACAACGCTTTGTT+GGG - tig0020873:73284-73303 Msa1387010:intron 50.0%
GATCGTCGGAAACCTTAGCA+AGG + tig0020873:74187-74206 None:intergenic 50.0%
CCAATTAGGTCCCATGTTGC+TGG + tig0020873:74225-74244 None:intergenic 50.0%
CCAGCAACATGGGACCTAAT+TGG - tig0020873:74222-74241 Msa1387010:CDS 50.0%
! CGGCAGATCTGAAGCCAATT+AGG + tig0020873:74239-74258 None:intergenic 50.0%
ATCGGAGGACATGGTGCGAA+CGG + tig0020873:69024-69043 None:intergenic 55.0%
TCTCTACGCTTCAACTGCGG+CGG - tig0020873:69113-69132 Msa1387010:three_prime_UTR 55.0%
CCATCGGAGTCATTGCTGCT+TGG + tig0020873:69314-69333 None:intergenic 55.0%
CCAAGCAGCAATGACTCCGA+TGG - tig0020873:69311-69330 Msa1387010:intron 55.0%
GTAGACAGACTCGTCGGTGT+TGG - tig0020873:69383-69402 Msa1387010:intron 55.0%
!! AGACTCGTCGGTGTTGGTGA+CGG - tig0020873:69389-69408 Msa1387010:intron 55.0%
!! ATGAGTGGTGCTACTACGGG+TGG - tig0020873:69786-69805 Msa1387010:intron 55.0%
CCTGCCATTCTACGGTATGG+AGG + tig0020873:70714-70733 None:intergenic 55.0%
CCTCCATACCGTAGAATGGC+AGG - tig0020873:70711-70730 Msa1387010:intron 55.0%
GCAGCACCATCCCATATACG+AGG + tig0020873:70989-71008 None:intergenic 55.0%
CGCAGCGCTATTCCTCACTT+TGG + tig0020873:71104-71123 None:intergenic 55.0%
AATAGCGCTGCGACAGGACT+GGG - tig0020873:71112-71131 Msa1387010:intron 55.0%
GCAAAAATCCCAGAAGGGGG+TGG - tig0020873:71138-71157 Msa1387010:intron 55.0%
CCGACCAAGCTCTGTCATTG+AGG + tig0020873:71216-71235 None:intergenic 55.0%
TGACCTCCGCAAGACAAGGT+GGG - tig0020873:71244-71263 Msa1387010:intron 55.0%
TCCATGCTTATCCCCCGTTG+AGG - tig0020873:72608-72627 Msa1387010:intron 55.0%
CCATGCTTATCCCCCGTTGA+GGG - tig0020873:72609-72628 Msa1387010:intron 55.0%
CTTATCCCCCGTTGAGGGTT+GGG - tig0020873:72614-72633 Msa1387010:intron 55.0%
GTCAAGGCAACCAGTACCAC+AGG + tig0020873:72854-72873 None:intergenic 55.0%
!! AGCAGCTCGAAGTGCTGTCA+AGG + tig0020873:72870-72889 None:intergenic 55.0%
ACCCGATCCGTCACAGCAAA+TGG + tig0020873:73148-73167 None:intergenic 55.0%
!! TCACGCCCAACAAAGCGTTG+TGG + tig0020873:73292-73311 None:intergenic 55.0%
GCAGTATCGCTCCCTTGCTA+AGG - tig0020873:74172-74191 Msa1387010:CDS 55.0%
ACGGTATCACCGACCTGTCG+CGG + tig0020873:69146-69165 None:intergenic 60.0%
!! GTACATCTGACGGGTTCCCG+CGG + tig0020873:69271-69290 None:intergenic 60.0%
CGAGTCAGGGGAGTCGTTGA+GGG - tig0020873:69977-69996 Msa1387010:intron 60.0%
GTGAGGAATAGCGCTGCGAC+AGG - tig0020873:71106-71125 Msa1387010:intron 60.0%
GAATAGCGCTGCGACAGGAC+TGG - tig0020873:71111-71130 Msa1387010:intron 60.0%
CAAGTTCCCCACCCCCTTCT+GGG + tig0020873:71149-71168 None:intergenic 60.0%
CTCCTGACCTCCGCAAGACA+AGG - tig0020873:71240-71259 Msa1387010:intron 60.0%
CACCTTGTCTTGCGGAGGTC+AGG + tig0020873:71245-71264 None:intergenic 60.0%
CTGACCTCCGCAAGACAAGG+TGG - tig0020873:71243-71262 Msa1387010:intron 60.0%
CCCTCAACGGGGGATAAGCA+TGG + tig0020873:72612-72631 None:intergenic 60.0%
GCTTATCCCCCGTTGAGGGT+TGG - tig0020873:72613-72632 Msa1387010:intron 60.0%
TTCCCCTCCCAACCCTCAAC+GGG + tig0020873:72624-72643 None:intergenic 60.0%
CTTCCCCTCCCAACCCTCAA+CGG + tig0020873:72625-72644 None:intergenic 60.0%
GTTGAGGGTTGGGAGGGGAA+GGG - tig0020873:72624-72643 Msa1387010:intron 60.0%
TTGAGGGTTGGGAGGGGAAG+GGG - tig0020873:72625-72644 Msa1387010:intron 60.0%
AGCACTTCGAGCTGCTGTGC+AGG - tig0020873:72874-72893 Msa1387010:CDS 60.0%
CTGCTGTGCAGGCGTATCGT+CGG - tig0020873:72885-72904 Msa1387010:CDS 60.0%
TGCTGTGCAGGCGTATCGTC+GGG - tig0020873:72886-72905 Msa1387010:CDS 60.0%
GGTCCCATGTTGCTGGAGAC+AGG + tig0020873:74218-74237 None:intergenic 60.0%
GTATCACCGACCTGTCGCGG+TGG + tig0020873:69143-69162 None:intergenic 65.0%
CTCAGGGCACGGAGTTTCGC+CGG - tig0020873:69231-69250 Msa1387010:three_prime_UTR 65.0%
!! ATCTGACGGGTTCCCGCGGT+CGG + tig0020873:69267-69286 None:intergenic 65.0%
GCGAGTCAGGGGAGTCGTTG+AGG - tig0020873:69976-69995 Msa1387010:intron 65.0%
CCAAGTTCCCCACCCCCTTC+TGG + tig0020873:71150-71169 None:intergenic 65.0%
CCAGAAGGGGGTGGGGAACT+TGG - tig0020873:71147-71166 Msa1387010:intron 65.0%
CCTCCCACCTTGTCTTGCGG+AGG + tig0020873:71250-71269 None:intergenic 65.0%
CCTCCGCAAGACAAGGTGGG+AGG - tig0020873:71247-71266 Msa1387010:intron 65.0%
ATCCCCCGTTGAGGGTTGGG+AGG - tig0020873:72617-72636 Msa1387010:intron 65.0%
TCCCCCGTTGAGGGTTGGGA+GGG - tig0020873:72618-72637 Msa1387010:intron 65.0%
TCCCCTCCCAACCCTCAACG+GGG + tig0020873:72623-72642 None:intergenic 65.0%
CGTTGAGGGTTGGGAGGGGA+AGG - tig0020873:72623-72642 Msa1387010:intron 65.0%
GCAGGCGTATCGTCGGGAAG+AGG - tig0020873:72892-72911 Msa1387010:CDS 65.0%
GGTGCACCACCGCGACAGGT+CGG - tig0020873:69134-69153 Msa1387010:three_prime_UTR 70.0%
CCCCTCCCAACCCTCAACGG+GGG + tig0020873:72622-72641 None:intergenic 70.0%
CCCCCGTTGAGGGTTGGGAG+GGG - tig0020873:72619-72638 Msa1387010:intron 70.0%
GGGTTGGGAGGGGAAGGGGT+TGG - tig0020873:72629-72648 Msa1387010:intron 70.0%
! CGGCGGTGCACCACCGCGAC+AGG - tig0020873:69130-69149 Msa1387010:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
tig0020873 gene 68888 74544 68888 ID=Msa1387010;Name=Msa1387010
tig0020873 mRNA 68888 74544 68888 ID=Msa1387010-mRNA-1;Parent=Msa1387010;Name=Msa1387010-mRNA-1;_AED=0.26;_eAED=0.26;_QI=144|1|1|1|0.85|0.87|8|737|307
tig0020873 exon 68888 69302 68888 ID=Msa1387010-mRNA-1:exon:10445;Parent=Msa1387010-mRNA-1
tig0020873 exon 70088 70158 70088 ID=Msa1387010-mRNA-1:exon:10444;Parent=Msa1387010-mRNA-1
tig0020873 exon 70255 70344 70255 ID=Msa1387010-mRNA-1:exon:10443;Parent=Msa1387010-mRNA-1
tig0020873 exon 70468 70556 70468 ID=Msa1387010-mRNA-1:exon:10442;Parent=Msa1387010-mRNA-1
tig0020873 exon 71000 71057 71000 ID=Msa1387010-mRNA-1:exon:10441;Parent=Msa1387010-mRNA-1
tig0020873 exon 72754 72924 72754 ID=Msa1387010-mRNA-1:exon:10440;Parent=Msa1387010-mRNA-1
tig0020873 exon 73411 73705 73411 ID=Msa1387010-mRNA-1:exon:10439;Parent=Msa1387010-mRNA-1
tig0020873 exon 73929 74544 73929 ID=Msa1387010-mRNA-1:exon:10438;Parent=Msa1387010-mRNA-1
tig0020873 five_prime_UTR 74401 74544 74401 ID=Msa1387010-mRNA-1:five_prime_utr;Parent=Msa1387010-mRNA-1
tig0020873 CDS 73929 74400 73929 ID=Msa1387010-mRNA-1:cds;Parent=Msa1387010-mRNA-1
tig0020873 CDS 73411 73705 73411 ID=Msa1387010-mRNA-1:cds;Parent=Msa1387010-mRNA-1
tig0020873 CDS 72768 72924 72768 ID=Msa1387010-mRNA-1:cds;Parent=Msa1387010-mRNA-1
tig0020873 three_prime_UTR 72754 72767 72754 ID=Msa1387010-mRNA-1:three_prime_utr;Parent=Msa1387010-mRNA-1
tig0020873 three_prime_UTR 71000 71057 71000 ID=Msa1387010-mRNA-1:three_prime_utr;Parent=Msa1387010-mRNA-1
tig0020873 three_prime_UTR 70468 70556 70468 ID=Msa1387010-mRNA-1:three_prime_utr;Parent=Msa1387010-mRNA-1
tig0020873 three_prime_UTR 70255 70344 70255 ID=Msa1387010-mRNA-1:three_prime_utr;Parent=Msa1387010-mRNA-1
tig0020873 three_prime_UTR 70088 70158 70088 ID=Msa1387010-mRNA-1:three_prime_utr;Parent=Msa1387010-mRNA-1
tig0020873 three_prime_UTR 68888 69302 68888 ID=Msa1387010-mRNA-1:three_prime_utr;Parent=Msa1387010-mRNA-1
Gene Sequence

>Msa1387010

ATGTCCTCCGATGACATCAATCTCACTCCCGATCAAAGAATCGAAAACGGCCTCACTTCCCCTCTCGTATTTCAAGACGACTCTCTACGCTTCAACTGCGGCGGTGCACCACCGCGACAGGTCGGTGATACCGTTCCTAAAACCGGCGGTTTCATCGACGATAAGATGTTCACCGTCAATCGTGATCAGTTTTTCACTTCTCAGGGCACGGAGTTTCGCCGGAATGTTTTTTCCGACCGCGGGAACCCGTCAGATGTACTGAACTGGAGCGAGGGAACTCCAAGCAGCAATGACTCCGATGGTGAAGACGATGAAGATGATGATGAAGACGACGATGGCGGTGACACCGTAGTAGACAGACTCGTCGGTGTTGGTGACGGTAGCAAGCGCAGTTCCAATTCAATCATTGATGTTAACAATAATAATGCTGGTAATGTTACAAATGGAAAATCCCAGCTTCATTCCCCTTATGTTTCCGGTAGAGAGATACTGGGAAAGGATGGTGAAATTGTACAGTTGGTGCATAACAATATGAGTGGTGCTACTACGGGTGGAGATGATCAGCGAGAAAGATTAGGTAAAAATCAGAACTCTGTAACTGACTGCGAGGAGTATTATTCACACTATCTTCAAGGTACGGAAGGGTCACCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGTGGATTTAGTGGAAGAAAGGATGTTGTGTATTCAAGCGAGTCAGGGGAGTCGTTGAGGGCGATTCTTTCAGATCCTGTTACTGGAACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATACATCATGTTATTAGAATGGTGGGTTCTAAGCCATCAAAATGCCATAATTTTCAGACTGACCTTTTCTGTGACTTGTCAACTGAAAAATGTTAA
Protein sequence

>Msa1387010

MSSDDINLTPDQRIENGLTSPLVFQDDSLRFNCGGAPPRQVGDTVPKTGGFIDDKMFTVNRDQFFTSQGTEFRRNVFSDRGNPSDVLNWSEGTPSSNDSDGEDDEDDDEDDDGGDTVVDRLVGVGDGSKRSSNSIIDVNNNNAGNVTNGKSQLHSPYVSGREILGKDGEIVQLVHNNMSGATTGGDDQRERLGKNQNSVTDCEEYYSHYLQGTEGSPSVQKVMVDDNGCGFSGRKDVVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGIHHVIRMVGSKPSKCHNFQTDLFCDLSTEKC*