AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724830 MtrunA17_Chr5g0416481 98.328 299 5 0 1 299 1 299 0.0 606
Msa0724830 MtrunA17_Chr2g0297071 39.560 182 101 3 114 294 135 308 9.66e-34 125
Msa0724830 MtrunA17_Chr1g0204311 75.000 68 17 0 56 123 17 84 3.63e-29 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724830 AT2G02880.1 57.605 309 110 6 1 289 1 308 2.05e-113 330
Msa0724830 AT5G62270.1 37.433 187 112 2 114 299 199 381 5.12e-25 103
Msa0724830 AT5G62270.2 37.433 187 112 2 114 299 199 381 7.54e-25 103

Find 143 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTTTGGATCAGTTTA+AGG 0.153210 5_1:+23922312 None:intergenic
TCCTAATGTCATTCATTATA+TGG 0.171102 5_1:+23922247 None:intergenic
TAAGTATATCTTCTTCTCTT+TGG 0.205774 5_1:+23923380 None:intergenic
CTGTGTTGGTGGTGCCAATC+TGG 0.232756 5_1:-23922787 Msa0724830:three_prime_UTR
TTCTATTCTAATTTAACTTC+TGG 0.232921 5_1:+23922589 None:intergenic
CCCTTCCCTCTCTTGGCATT+TGG 0.234727 5_1:+23923121 None:intergenic
GAAACTTGAGGAGGCGAAAT+TGG 0.248773 5_1:-23927168 Msa0724830:CDS
AACTGAAGGAAGCAAGTTTA+AGG 0.257838 5_1:-23922547 Msa0724830:three_prime_UTR
GAAAGGTGGGATTTATAGTT+TGG 0.258551 5_1:-23927261 Msa0724830:CDS
TTAAGGACATCAAATTAAAT+TGG 0.279303 5_1:-23922692 Msa0724830:three_prime_UTR
AAAATATTAAGAAGGATTAT+AGG 0.285810 5_1:-23927238 Msa0724830:CDS
TTAAACTGATCCAAAGCTTT+TGG 0.296668 5_1:-23922310 Msa0724830:three_prime_UTR
AAGTATATCTTCTTCTCTTT+GGG 0.299726 5_1:+23923381 None:intergenic
AAAATCAAGATGGAAATATA+TGG 0.299831 5_1:-23923411 Msa0724830:CDS
TCACATTGTCATTTCCTTCA+TGG 0.302593 5_1:+23922814 None:intergenic
TCCCATGGTGCTCGTGTCTT+TGG 0.306250 5_1:+23927413 None:intergenic
TGTATGAATGCTAGTTAGAT+TGG 0.340226 5_1:-23922633 Msa0724830:three_prime_UTR
GGGGTGTGGTGGTGGTGAAG+GGG 0.343231 5_1:-23927144 Msa0724830:CDS
TGAAACTGTAGGGTACAAAA+TGG 0.347785 5_1:-23922439 Msa0724830:three_prime_UTR
AAACATAAAATTAAGCAGTT+TGG 0.356591 5_1:+23922198 None:intergenic
TTGAAGAGATGAATGAGAAT+TGG 0.357713 5_1:-23927334 Msa0724830:CDS
TCTATTCTAATTTAACTTCT+GGG 0.364297 5_1:+23922590 None:intergenic
ATGTCGCTTTAACACTTAGA+AGG 0.364899 5_1:-23922734 Msa0724830:three_prime_UTR
ATTTGCTCTTAACAGAATCT+TGG 0.365991 5_1:-23922849 Msa0724830:three_prime_UTR
GTGCTCGTGTCTTTGGTGTT+AGG 0.368387 5_1:+23927420 None:intergenic
AAACTTGAGGAGGCGAAATT+GGG 0.372804 5_1:-23927167 Msa0724830:CDS
GAAGTCTTCTCTTCTTTGAA+TGG 0.374215 5_1:+23923055 None:intergenic
AGAAGTTGCATGCTGGGCTT+TGG 0.374544 5_1:-23927205 Msa0724830:CDS
CTTCTCTTCTTTGAATGGTT+GGG 0.374760 5_1:+23923060 None:intergenic
GATTGTTGTTGGGAGTTTGA+TGG 0.387873 5_1:+23927523 None:intergenic
CATTCGTCTTCACCGCTTCG+AGG 0.391057 5_1:+23927479 None:intergenic
TCTTCTCTTCTTTGAATGGT+TGG 0.391343 5_1:+23923059 None:intergenic
GCATGCTGGGCTTTGGAGTA+AGG 0.392569 5_1:-23927198 Msa0724830:CDS
TGTAGGGTACAAAATGGATT+TGG 0.397122 5_1:-23922433 Msa0724830:three_prime_UTR
AATTGGAATGAGAGGAGAAA+AGG 0.398586 5_1:-23927317 Msa0724830:CDS
AATTGCGTATAGCAAATTTC+AGG 0.398978 5_1:-23923338 Msa0724830:intron
TTCTTTGAATGGTTGGGTAG+AGG 0.407560 5_1:+23923066 None:intergenic
AAAGCTTTGGATCAGTTTAA+GGG 0.411256 5_1:+23922313 None:intergenic
GAAAATATTGCTGCCCAGAT+TGG 0.426421 5_1:+23922773 None:intergenic
TGGGTGAGGATTTCAAGCTT+TGG 0.430185 5_1:+23922267 None:intergenic
TCTTAACAGAATCTTGGTTA+AGG 0.437011 5_1:-23922843 Msa0724830:three_prime_UTR
TCTTTGAATGGTTGGGTAGA+GGG 0.440125 5_1:+23923067 None:intergenic
ATGTATTTCCACCCATCAAT+TGG 0.442948 5_1:+23923160 None:intergenic
AATGTATTAGGCAAATGCTT+TGG 0.443655 5_1:-23922338 Msa0724830:three_prime_UTR
CCCATATAATGAATGACATT+AGG 0.444766 5_1:-23922248 Msa0724830:three_prime_UTR
CCTAATGTCATTCATTATAT+GGG 0.446129 5_1:+23922248 None:intergenic
CGTTGTTCAGATCATTATTG+TGG 0.449866 5_1:+23923491 None:intergenic
GTGAGGATGACCAAAAGCTT+TGG 0.451099 5_1:+23922300 None:intergenic
ATTGGAATGAGAGGAGAAAA+GGG 0.452091 5_1:-23927316 Msa0724830:CDS
GATATTGTTTCCCACCCATC+AGG 0.452510 5_1:+23923436 None:intergenic
AACACTGCCCTTCCCTCTCT+TGG 0.455080 5_1:+23923114 None:intergenic
AGAAACAGAAGTTGCATGCT+GGG 0.463426 5_1:-23927211 Msa0724830:CDS
AGAAGAAGATATACTTATGC+AGG 0.469115 5_1:-23923374 Msa0724830:CDS
AAGAAACAGAAGTTGCATGC+TGG 0.474225 5_1:-23927212 Msa0724830:CDS
TGGAGAAGAGTGATTTGAAT+TGG 0.476363 5_1:+23927546 None:intergenic
GTGAGGATTTCAAGCTTTGG+AGG 0.476965 5_1:+23922270 None:intergenic
TGTGTTGGTGGTGCCAATCT+GGG 0.478282 5_1:-23922786 Msa0724830:three_prime_UTR
TAGTTTGGAAAATATTAAGA+AGG 0.479941 5_1:-23927246 Msa0724830:CDS
GAGAATTGACGGATTGTTGT+TGG 0.486189 5_1:+23927512 None:intergenic
AGCCGGAGGAGGCCAATTGA+TGG 0.487719 5_1:-23923172 Msa0724830:CDS
AGAATTGACGGATTGTTGTT+GGG 0.488814 5_1:+23927513 None:intergenic
TGAATGAGAATTGGAATGAG+AGG 0.489738 5_1:-23927325 Msa0724830:CDS
GTCTTTGGTGTTAGGTCTTG+TGG 0.490061 5_1:+23927428 None:intergenic
GAAATACATGATTGAGGTGG+TGG 0.492359 5_1:-23923146 Msa0724830:CDS
TTCGGAAGAAGTGGCGGACG+CGG 0.493653 5_1:-23927372 Msa0724830:CDS
GTTGTTCAGATCATTATTGT+GGG 0.496230 5_1:+23923492 None:intergenic
CCCCTTGGTAGGAGATAGCC+TGG 0.496275 5_1:-23923013 Msa0724830:exon
GAGGAGAAAAGGGTTGAAGA+AGG 0.496899 5_1:-23927306 Msa0724830:CDS
CAACTTTGCCGAGGTGTGAC+CGG 0.499946 5_1:-23922900 Msa0724830:three_prime_UTR
AGGAGGAGAATGTGAAAGGT+GGG 0.500011 5_1:-23927274 Msa0724830:CDS
TGTTGTTGGGAGTTTGATGG+TGG 0.501232 5_1:+23927526 None:intergenic
GTTGAAGAAGGAGAAGGTTG+AGG 0.502124 5_1:-23927294 Msa0724830:CDS
ACCCATCAATTGGCCTCCTC+CGG 0.503862 5_1:+23923170 None:intergenic
TCAAGACACACATATTTAGC+CGG 0.505354 5_1:-23923189 Msa0724830:CDS
AAGACGAATGGAACGAAGCA+TGG 0.512484 5_1:-23927466 Msa0724830:CDS
TCTCGCAAAATAGAAACAAA+AGG 0.514282 5_1:-23922933 Msa0724830:three_prime_UTR
GACCAGGCTATCTCCTACCA+AGG 0.517693 5_1:+23923011 None:intergenic
AAATCAAGATGGAAATATAT+GGG 0.521501 5_1:-23923410 Msa0724830:CDS
GCCGGAGGAGGCCAATTGAT+GGG 0.524719 5_1:-23923171 Msa0724830:CDS
GCACTGAGAAAGAAATAGAA+TGG 0.530490 5_1:-23922394 Msa0724830:three_prime_UTR
GAGGAGGAGAATGTGAAAGG+TGG 0.533233 5_1:-23927275 Msa0724830:CDS
GAAGAAGGAGAAGGTTGAGG+AGG 0.538173 5_1:-23927291 Msa0724830:CDS
TGTCATTCATTATATGGGTG+AGG 0.538853 5_1:+23922253 None:intergenic
CTCGAAGCGGTGAAGACGAA+TGG 0.539770 5_1:-23927478 Msa0724830:CDS
AACTTGAGGAGGCGAAATTG+GGG 0.540273 5_1:-23927166 Msa0724830:CDS
TAAGGAGATTGAGAAACTTG+AGG 0.544087 5_1:-23927180 Msa0724830:CDS
CCAAATGCCAAGAGAGGGAA+GGG 0.544767 5_1:-23923121 Msa0724830:CDS
ATTTGGACCTTTGTATGTGT+TGG 0.545443 5_1:-23922416 Msa0724830:three_prime_UTR
GGTTAAGGTTCAAACCATGA+AGG 0.545596 5_1:-23922828 Msa0724830:three_prime_UTR
GCAGTATGTACAGTGAGTTA+AGG 0.545841 5_1:-23922709 Msa0724830:three_prime_UTR
ACCAAAGACACGAGCACCAT+GGG 0.550429 5_1:-23927414 Msa0724830:CDS
TGTTGTTGTGATTCTTCGAA+AGG 0.551025 5_1:+23927583 None:intergenic
AGGAGACGTGAATTTCGCTT+CGG 0.552773 5_1:-23927390 Msa0724830:CDS
TTCAAGCTTTGGAGGGCTAG+AGG 0.554324 5_1:+23922278 None:intergenic
AACGTATCTTCAAGAGGGAA+AGG 0.555056 5_1:-23922475 Msa0724830:three_prime_UTR
GATTGCGAGATGAGAATTGA+CGG 0.555084 5_1:+23927501 None:intergenic
GAATTTCGCTTCGGAAGAAG+TGG 0.555553 5_1:-23927381 Msa0724830:CDS
GATAAGAGTTACATTCCCCT+TGG 0.562876 5_1:-23923028 Msa0724830:CDS
TGAATGACATTAGGATGCAT+AGG 0.569589 5_1:-23922239 Msa0724830:three_prime_UTR
TGAGGATTTCAAGCTTTGGA+GGG 0.571831 5_1:+23922271 None:intergenic
TTTAGATCAAGCACAACTGA+AGG 0.573033 5_1:-23922561 Msa0724830:three_prime_UTR
GTTGAGGAGGAGAATGTGAA+AGG 0.575029 5_1:-23927278 Msa0724830:CDS
CACACATATTTAGCCGGAGG+AGG 0.582454 5_1:-23923183 Msa0724830:CDS
AAAAGGGTTGAAGAAGGAGA+AGG 0.586592 5_1:-23927300 Msa0724830:CDS
AATGTGATGTACTGTGTTGG+TGG 0.588310 5_1:-23922798 Msa0724830:three_prime_UTR
AGAGTTACATTCCCCTTGGT+AGG 0.590750 5_1:-23923024 Msa0724830:CDS
TACTTATGCAGGAATTCGAA+CGG 0.593879 5_1:-23923363 Msa0724830:CDS
AGACGAATGGAACGAAGCAT+GGG 0.595675 5_1:-23927465 Msa0724830:CDS
CTCAGTGCCAACACATACAA+AGG 0.597180 5_1:+23922409 None:intergenic
ACCAGGCTATCTCCTACCAA+GGG 0.602895 5_1:+23923012 None:intergenic
TTGCCGAGGTGTGACCGGAA+TGG 0.607469 5_1:-23922895 Msa0724830:three_prime_UTR
ACCAAATGCCAAGAGAGGGA+AGG 0.608335 5_1:-23923122 Msa0724830:CDS
AAATTCACGTCTCCTTCCCA+TGG 0.608435 5_1:+23927398 None:intergenic
AGTGGCGGACGCGGAGACGA+AGG 0.608660 5_1:-23927363 Msa0724830:CDS
CTTGAGGAGGCGAAATTGGG+GGG 0.616628 5_1:-23927164 Msa0724830:CDS
TGACATAACGTATCTTCAAG+AGG 0.617237 5_1:-23922481 Msa0724830:three_prime_UTR
CTCTGCAGAGGTCATTGCAG+TGG 0.620641 5_1:-23922971 Msa0724830:three_prime_UTR
CACCAAAGACACGAGCACCA+TGG 0.621256 5_1:-23927415 Msa0724830:CDS
AAGACACGAGCACCATGGGA+AGG 0.621580 5_1:-23927410 Msa0724830:CDS
TTTCGCTTCGGAAGAAGTGG+CGG 0.622582 5_1:-23927378 Msa0724830:CDS
ATACATAAAACTACATGACC+AGG 0.626226 5_1:+23922995 None:intergenic
GTTTGGTCTAATCCTAGTGT+CGG 0.629172 5_1:+23922215 None:intergenic
GTGGGACCAAATGCCAAGAG+AGG 0.630227 5_1:-23923127 Msa0724830:CDS
GACATAACGTATCTTCAAGA+GGG 0.631292 5_1:-23922480 Msa0724830:three_prime_UTR
GCTTTGGAGGGCTAGAGGTG+AGG 0.633112 5_1:+23922283 None:intergenic
CTGCCATTCCGGTCACACCT+CGG 0.639459 5_1:+23922892 None:intergenic
GACAATGTGATGTACTGTGT+TGG 0.643437 5_1:-23922801 Msa0724830:three_prime_UTR
ACTTGAGGAGGCGAAATTGG+GGG 0.644793 5_1:-23927165 Msa0724830:CDS
GGATGCATAGGACCGACACT+AGG 0.647618 5_1:-23922227 Msa0724830:three_prime_UTR
GTAGAGGGATCAGAGAGACT+TGG 0.651783 5_1:+23923082 None:intergenic
TTGAGGAGGCGAAATTGGGG+GGG 0.653265 5_1:-23927163 Msa0724830:CDS
TGGGACCAAATGCCAAGAGA+GGG 0.653748 5_1:-23923126 Msa0724830:CDS
TCATCTCGCAATCCTCGAAG+CGG 0.654358 5_1:-23927491 Msa0724830:CDS
GGAATGGCAGCTGAAAATCT+CGG 0.657229 5_1:-23922879 Msa0724830:three_prime_UTR
TGATCACTGCAACTTTGCCG+AGG 0.672315 5_1:-23922909 Msa0724830:three_prime_UTR
GGAGGAGGCCAATTGATGGG+TGG 0.673463 5_1:-23923168 Msa0724830:CDS
AGACACACATATTTAGCCGG+AGG 0.692755 5_1:-23923186 Msa0724830:CDS
GGAGATTGAGAAACTTGAGG+AGG 0.693976 5_1:-23927177 Msa0724830:CDS
AAATACATGATTGAGGTGGT+GGG 0.711165 5_1:-23923145 Msa0724830:CDS
CCAGGCTATCTCCTACCAAG+GGG 0.715022 5_1:+23923013 None:intergenic
ACGAAGCATGGGAATCAGCG+TGG 0.715370 5_1:-23927454 Msa0724830:CDS
GTGGAAATACATGATTGAGG+TGG 0.721823 5_1:-23923149 Msa0724830:CDS
TGGGTGGAAATACATGATTG+AGG 0.745836 5_1:-23923152 Msa0724830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTATTTTTTTTAATGTATT+AGG - chr5_1:23927454-23927473 Msa0724830:CDS 10.0%
!! AAAATATTAAGAAGGATTAT+AGG - chr5_1:23922566-23922585 Msa0724830:three_prime_UTR 15.0%
!! TTAAACTATTTATGCAAATA+TGG - chr5_1:23923370-23923389 Msa0724830:CDS 15.0%
!! AATAAGATGCTTATAAAAAT+AGG - chr5_1:23923829-23923848 Msa0724830:intron 15.0%
!! ATAAGATGCTTATAAAAATA+GGG - chr5_1:23923830-23923849 Msa0724830:intron 15.0%
!!! TTAATTACTTTAAGCTTTTA+AGG - chr5_1:23925916-23925935 Msa0724830:intron 15.0%
!! TTTCTAAATATTTCAATTAG+CGG - chr5_1:23926088-23926107 Msa0724830:intron 15.0%
!! AAAACAATATAATGCTTAAT+AGG + chr5_1:23926522-23926541 None:intergenic 15.0%
!!! ATTAAGCATTATATTGTTTT+TGG - chr5_1:23926522-23926541 Msa0724830:intron 15.0%
!! TATAAAGTTATAAATGCTAA+AGG + chr5_1:23926568-23926587 None:intergenic 15.0%
!!! TGTTTTTTTTTTTTTTGTCT+TGG - chr5_1:23927624-23927643 Msa0724830:five_prime_UTR 15.0%
!! TAGTTTGGAAAATATTAAGA+AGG - chr5_1:23922558-23922577 Msa0724830:three_prime_UTR 20.0%
!!! GTTTTATTTTATGCTTTGTT+TGG - chr5_1:23922748-23922767 Msa0724830:three_prime_UTR 20.0%
!! ACTTATTTAAACTTATCTAC+TGG + chr5_1:23923114-23923133 None:intergenic 20.0%
!! ATCAATCAATTAAGAAACTA+TGG + chr5_1:23923396-23923415 None:intergenic 20.0%
!! ATGACATATTTATAAGTCAT+TGG + chr5_1:23923501-23923520 None:intergenic 20.0%
!!! TAGTGGTTTTAATTTATACT+TGG - chr5_1:23924199-23924218 Msa0724830:intron 20.0%
!!! AGTGGATGAAAATTAAATTT+TGG - chr5_1:23924379-23924398 Msa0724830:intron 20.0%
!!! TTTTTTCACTTTAATGTTGA+AGG - chr5_1:23924951-23924970 Msa0724830:intron 20.0%
!!! TTTGTTTCTTTGAATTTTGT+TGG - chr5_1:23925948-23925967 Msa0724830:intron 20.0%
!! AGATACATTAATATTAAAGC+AGG + chr5_1:23926254-23926273 None:intergenic 20.0%
!! AAAATCAAGATGGAAATATA+TGG - chr5_1:23926393-23926412 Msa0724830:intron 20.0%
!! AAATCAAGATGGAAATATAT+GGG - chr5_1:23926394-23926413 Msa0724830:intron 20.0%
!! TTAAGGACATCAAATTAAAT+TGG - chr5_1:23927112-23927131 Msa0724830:CDS 20.0%
!!! TCTATTCTAATTTAACTTCT+GGG + chr5_1:23927217-23927236 None:intergenic 20.0%
!!! TTCTATTCTAATTTAACTTC+TGG + chr5_1:23927218-23927237 None:intergenic 20.0%
!! AAACATAAAATTAAGCAGTT+TGG + chr5_1:23927609-23927628 None:intergenic 20.0%
!!! TGCATTTTCTTTTGTTATGA+AGG + chr5_1:23922199-23922218 None:intergenic 25.0%
! TGTGTCAATACTTCATTTAA+AGG + chr5_1:23922781-23922800 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATTC+TGG - chr5_1:23923002-23923021 Msa0724830:exon 25.0%
!! GCTGTTTAAGATAGTTTATA+TGG - chr5_1:23923267-23923286 Msa0724830:intron 25.0%
! AAAGTATGATCCAATTTAAG+AGG + chr5_1:23923431-23923450 None:intergenic 25.0%
! TAGCTAATATGGAAACAATT+TGG - chr5_1:23923725-23923744 Msa0724830:intron 25.0%
! GCTTGTATAACAAATACTTA+TGG - chr5_1:23923795-23923814 Msa0724830:intron 25.0%
! ATCAATCAATTAACCAACTA+TGG + chr5_1:23923856-23923875 None:intergenic 25.0%
!!! GCTTAAAATTAAGAGCATTT+AGG + chr5_1:23924040-23924059 None:intergenic 25.0%
! AAATTGAATTCAAAGTGTAG+TGG - chr5_1:23924182-23924201 Msa0724830:intron 25.0%
!! AATCACACACTTGATATTTT+TGG - chr5_1:23924636-23924655 Msa0724830:intron 25.0%
!! TGATGGCATTTAAAATGAAA+AGG + chr5_1:23925113-23925132 None:intergenic 25.0%
! ACCTATCTGTATATATGATA+AGG - chr5_1:23925260-23925279 Msa0724830:intron 25.0%
! ACCTTATCATATATACAGAT+AGG + chr5_1:23925264-23925283 None:intergenic 25.0%
!! TTTTATAACACATCATGTCA+TGG + chr5_1:23925370-23925389 None:intergenic 25.0%
! GTGTTATAAAATATAGACCT+TGG - chr5_1:23925379-23925398 Msa0724830:intron 25.0%
!!! CTCAATTTTAAGGTTAATTC+TGG + chr5_1:23925583-23925602 None:intergenic 25.0%
! CTTAAAATTGAGTCATTACA+GGG - chr5_1:23925591-23925610 Msa0724830:intron 25.0%
! TTAAAATTGAGTCATTACAG+GGG - chr5_1:23925592-23925611 Msa0724830:intron 25.0%
!! GGTATTTTATGATTTTCTCA+CGG - chr5_1:23925614-23925633 Msa0724830:intron 25.0%
! TGATTGAAAGAGAAAGAAAA+GGG + chr5_1:23925703-23925722 None:intergenic 25.0%
! TAAAACAGAAATGAAAACAG+TGG + chr5_1:23925884-23925903 None:intergenic 25.0%
! CAAAATTCAAAGAAACAAAC+AGG + chr5_1:23925947-23925966 None:intergenic 25.0%
! AGCCAAAAAAATAAAGATAG+CGG + chr5_1:23926134-23926153 None:intergenic 25.0%
!!! CTATCTTTATTTTTTTGGCT+CGG - chr5_1:23926134-23926153 Msa0724830:intron 25.0%
!!! ATGTTTTTGAATTCAGAAGT+TGG + chr5_1:23926347-23926366 None:intergenic 25.0%
! ACAATATCGAAAAATCAAGA+TGG - chr5_1:23926383-23926402 Msa0724830:intron 25.0%
! AAGTATATCTTCTTCTCTTT+GGG + chr5_1:23926426-23926445 None:intergenic 25.0%
! TAAGTATATCTTCTTCTCTT+TGG + chr5_1:23926427-23926446 None:intergenic 25.0%
!!! AATTTAACTTCTGGGTTTTA+GGG + chr5_1:23927209-23927228 None:intergenic 25.0%
!!! TAATTTAACTTCTGGGTTTT+AGG + chr5_1:23927210-23927229 None:intergenic 25.0%
!! AAATGTTTTCATGAAACTGT+AGG - chr5_1:23927354-23927373 Msa0724830:CDS 25.0%
!! AATGTTTTCATGAAACTGTA+GGG - chr5_1:23927355-23927374 Msa0724830:CDS 25.0%
! CCTAATGTCATTCATTATAT+GGG + chr5_1:23927559-23927578 None:intergenic 25.0%
! TCCTAATGTCATTCATTATA+TGG + chr5_1:23927560-23927579 None:intergenic 25.0%
TTGAAGAGATGAATGAGAAT+TGG - chr5_1:23922470-23922489 Msa0724830:three_prime_UTR 30.0%
! AAGTTATTCTGGAGAGATTA+TGG - chr5_1:23923013-23923032 Msa0724830:exon 30.0%
TTAAATAAGTCAATCCAAGC+AGG - chr5_1:23923124-23923143 Msa0724830:CDS 30.0%
ATGATGTGTTCCTCTTAAAT+TGG - chr5_1:23923418-23923437 Msa0724830:CDS 30.0%
CATATTTATAAGTCATTGGC+TGG + chr5_1:23923497-23923516 None:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+CGG - chr5_1:23923574-23923593 Msa0724830:intron 30.0%
! ATTTGGCTTCAGTTTATCTT+TGG - chr5_1:23923742-23923761 Msa0724830:intron 30.0%
TATAAAAATAGGGCCATAGT+TGG - chr5_1:23923840-23923859 Msa0724830:intron 30.0%
ATGATGTGATGCTCTTAAAT+TGG - chr5_1:23923878-23923897 Msa0724830:intron 30.0%
CTTCGGAAAAATATATTGCT+TGG + chr5_1:23924350-23924369 None:intergenic 30.0%
! CAAGCAATATATTTTTCCGA+AGG - chr5_1:23924348-23924367 Msa0724830:intron 30.0%
TCTATTAGTGATCTGTTTCA+AGG + chr5_1:23924414-23924433 None:intergenic 30.0%
TTGAAACAGATCACTAATAG+AGG - chr5_1:23924413-23924432 Msa0724830:intron 30.0%
TGCGAGGAACATTATATATT+TGG - chr5_1:23924714-23924733 Msa0724830:intron 30.0%
CATTATATATTTGGTCGTCT+TGG - chr5_1:23924723-23924742 Msa0724830:intron 30.0%
!!! CTGCTGATATATCTAGTTTT+AGG - chr5_1:23924809-23924828 Msa0724830:intron 30.0%
!!! AACATGCTTTTTTGTGCAAT+TGG - chr5_1:23924862-23924881 Msa0724830:intron 30.0%
!!! ACATGCTTTTTTGTGCAATT+GGG - chr5_1:23924863-23924882 Msa0724830:intron 30.0%
! TTTTTGTGCAATTGGGTTTT+AGG - chr5_1:23924870-23924889 Msa0724830:intron 30.0%
AAAGCATAAACTACAAGATG+AGG + chr5_1:23925052-23925071 None:intergenic 30.0%
!! TATGCTTTTTGTGAAAGTTG+AGG - chr5_1:23925064-23925083 Msa0724830:intron 30.0%
! TTTTTGTGAAAGTTGAGGAT+TGG - chr5_1:23925069-23925088 Msa0724830:intron 30.0%
! AAAATGAAAAGGCATATGCT+AGG + chr5_1:23925102-23925121 None:intergenic 30.0%
TCTATCAGAATGCAATAGAA+AGG + chr5_1:23925142-23925161 None:intergenic 30.0%
ATTCTGATAGATGTTGAGAA+AGG - chr5_1:23925151-23925170 Msa0724830:intron 30.0%
TTCTGATAGATGTTGAGAAA+GGG - chr5_1:23925152-23925171 Msa0724830:intron 30.0%
ACTAGATTAATTTCGATCCA+AGG + chr5_1:23925399-23925418 None:intergenic 30.0%
! CCTGTAATGACTCAATTTTA+AGG + chr5_1:23925593-23925612 None:intergenic 30.0%
CCTTAAAATTGAGTCATTAC+AGG - chr5_1:23925590-23925609 Msa0724830:intron 30.0%
TAAAATTGAGTCATTACAGG+GGG - chr5_1:23925593-23925612 Msa0724830:intron 30.0%
GTGATTGAAAGAGAAAGAAA+AGG + chr5_1:23925704-23925723 None:intergenic 30.0%
GCCAAAAAAATAAAGATAGC+GGG + chr5_1:23926133-23926152 None:intergenic 30.0%
ACATAAACATTACCATCTCA+TGG - chr5_1:23926181-23926200 Msa0724830:intron 30.0%
!! AAAATACTGCAGTTGATAAG+AGG + chr5_1:23926287-23926306 None:intergenic 30.0%
GTTGTTCAGATCATTATTGT+GGG + chr5_1:23926315-23926334 None:intergenic 30.0%
AATTCAAAAACATGCCTGAT+GGG - chr5_1:23926354-23926373 Msa0724830:intron 30.0%
AGAAGAAGATATACTTATGC+AGG - chr5_1:23926430-23926449 Msa0724830:intron 30.0%
AATTGCGTATAGCAAATTTC+AGG - chr5_1:23926466-23926485 Msa0724830:intron 30.0%
ATACATAAAACTACATGACC+AGG + chr5_1:23926812-23926831 None:intergenic 30.0%
TCTCGCAAAATAGAAACAAA+AGG - chr5_1:23926871-23926890 Msa0724830:intron 30.0%
ATTTGCTCTTAACAGAATCT+TGG - chr5_1:23926955-23926974 Msa0724830:intron 30.0%
TCTTAACAGAATCTTGGTTA+AGG - chr5_1:23926961-23926980 Msa0724830:intron 30.0%
TGTATGAATGCTAGTTAGAT+TGG - chr5_1:23927171-23927190 Msa0724830:CDS 30.0%
AATGTATTAGGCAAATGCTT+TGG - chr5_1:23927466-23927485 Msa0724830:CDS 30.0%
!! AAAGCTTTGGATCAGTTTAA+GGG + chr5_1:23927494-23927513 None:intergenic 30.0%
!! AAAAGCTTTGGATCAGTTTA+AGG + chr5_1:23927495-23927514 None:intergenic 30.0%
! TTAAACTGATCCAAAGCTTT+TGG - chr5_1:23927494-23927513 Msa0724830:CDS 30.0%
CCCATATAATGAATGACATT+AGG - chr5_1:23927556-23927575 Msa0724830:CDS 30.0%
!!! TTTTTTTGTCTTGGATGTAG+TGG - chr5_1:23927633-23927652 Msa0724830:five_prime_UTR 30.0%
TGTTGTTGTGATTCTTCGAA+AGG + chr5_1:23922224-23922243 None:intergenic 35.0%
TGGAGAAGAGTGATTTGAAT+TGG + chr5_1:23922261-23922280 None:intergenic 35.0%
!! AGAATTGACGGATTGTTGTT+GGG + chr5_1:23922294-23922313 None:intergenic 35.0%
TGAATGAGAATTGGAATGAG+AGG - chr5_1:23922479-23922498 Msa0724830:three_prime_UTR 35.0%
AATTGGAATGAGAGGAGAAA+AGG - chr5_1:23922487-23922506 Msa0724830:three_prime_UTR 35.0%
ATTGGAATGAGAGGAGAAAA+GGG - chr5_1:23922488-23922507 Msa0724830:three_prime_UTR 35.0%
GAAAGGTGGGATTTATAGTT+TGG - chr5_1:23922543-23922562 Msa0724830:three_prime_UTR 35.0%
TAAGGAGATTGAGAAACTTG+AGG - chr5_1:23922624-23922643 Msa0724830:three_prime_UTR 35.0%
! AGACCTATTTTGCACCTTAT+AGG - chr5_1:23922903-23922922 Msa0724830:three_prime_UTR 35.0%
TGTCCTATAAGGTGCAAAAT+AGG + chr5_1:23922909-23922928 None:intergenic 35.0%
CTAAGCATGTATGTCCTATA+AGG + chr5_1:23922920-23922939 None:intergenic 35.0%
CTTATAGGACATACATGCTT+AGG - chr5_1:23922918-23922937 Msa0724830:three_prime_UTR 35.0%
!! AACACTTTGTGAGAGTGTTT+AGG - chr5_1:23923185-23923204 Msa0724830:CDS 35.0%
! AGAGTGTTTAGTATAGCTCA+CGG - chr5_1:23923646-23923665 Msa0724830:intron 35.0%
GCTCTTGAAGATAGCTAATA+TGG - chr5_1:23923714-23923733 Msa0724830:intron 35.0%
ACTGAAACTTCAGATTGAAG+TGG + chr5_1:23923997-23924016 None:intergenic 35.0%
CACGTATTGTTTGTAACCTA+TGG - chr5_1:23924064-23924083 Msa0724830:intron 35.0%
! CTCGGGTAGAGTTTAAAATT+TGG - chr5_1:23924096-23924115 Msa0724830:intron 35.0%
! GGGTAGAGTTTAAAATTTGG+AGG - chr5_1:23924099-23924118 Msa0724830:intron 35.0%
! TTGGAGGCTTTTAATGTGTT+TGG - chr5_1:23924115-23924134 Msa0724830:intron 35.0%
! CATCAGTTCTAGTTAAGATG+AGG - chr5_1:23924286-23924305 Msa0724830:intron 35.0%
! TTTCCGAAGGTATATTTGAG+TGG - chr5_1:23924361-23924380 Msa0724830:intron 35.0%
CATCCACTCAAATATACCTT+CGG + chr5_1:23924367-23924386 None:intergenic 35.0%
ATTAGTGATCTGTTTCAAGG+TGG + chr5_1:23924411-23924430 None:intergenic 35.0%
ACAGATCACTAATAGAGGAT+AGG - chr5_1:23924418-23924437 Msa0724830:intron 35.0%
TCAATAATCATAGCACGCAA+TGG + chr5_1:23924783-23924802 None:intergenic 35.0%
ACTAGATATATCAGCAGACT+TGG + chr5_1:23924806-23924825 None:intergenic 35.0%
! AACTCTACTAGTGTTGAAGT+TGG - chr5_1:23924905-23924924 Msa0724830:intron 35.0%
TCAGCACTTTCATAACAAAG+TGG + chr5_1:23925012-23925031 None:intergenic 35.0%
! CAATAGAAAGGCAGTATTGA+TGG + chr5_1:23925130-23925149 None:intergenic 35.0%
CTATTTCCAAGTCTTCTCTT+CGG - chr5_1:23925643-23925662 Msa0724830:intron 35.0%
AAAGAGGAGAAACAGAAACA+GGG + chr5_1:23925844-23925863 None:intergenic 35.0%
AAAAGAGGAGAAACAGAAAC+AGG + chr5_1:23925845-23925864 None:intergenic 35.0%
!!! GCCCGCTATCTTTATTTTTT+TGG - chr5_1:23926129-23926148 Msa0724830:intron 35.0%
CGTTGTTCAGATCATTATTG+TGG + chr5_1:23926316-23926335 None:intergenic 35.0%
GAATTCAAAAACATGCCTGA+TGG - chr5_1:23926353-23926372 Msa0724830:intron 35.0%
TACTTATGCAGGAATTCGAA+CGG - chr5_1:23926441-23926460 Msa0724830:intron 35.0%
TCAGGTGCTTATTAAAAGAC+AGG - chr5_1:23926484-23926503 Msa0724830:intron 35.0%
TCAAGACACACATATTTAGC+CGG - chr5_1:23926615-23926634 Msa0724830:intron 35.0%
ATGTATTTCCACCCATCAAT+TGG + chr5_1:23926647-23926666 None:intergenic 35.0%
AAATACATGATTGAGGTGGT+GGG - chr5_1:23926659-23926678 Msa0724830:intron 35.0%
CTTCTCTTCTTTGAATGGTT+GGG + chr5_1:23926747-23926766 None:intergenic 35.0%
TCTTCTCTTCTTTGAATGGT+TGG + chr5_1:23926748-23926767 None:intergenic 35.0%
GAAGTCTTCTCTTCTTTGAA+TGG + chr5_1:23926752-23926771 None:intergenic 35.0%
! GTTTTATGTATTCTCTGCAG+AGG - chr5_1:23926821-23926840 Msa0724830:intron 35.0%
! TCACATTGTCATTTCCTTCA+TGG + chr5_1:23926993-23927012 None:intergenic 35.0%
!! ATGTCGCTTTAACACTTAGA+AGG - chr5_1:23927070-23927089 Msa0724830:intron 35.0%
TTTAGATCAAGCACAACTGA+AGG - chr5_1:23927243-23927262 Msa0724830:CDS 35.0%
AACTGAAGGAAGCAAGTTTA+AGG - chr5_1:23927257-23927276 Msa0724830:CDS 35.0%
TGACATAACGTATCTTCAAG+AGG - chr5_1:23927323-23927342 Msa0724830:CDS 35.0%
GACATAACGTATCTTCAAGA+GGG - chr5_1:23927324-23927343 Msa0724830:CDS 35.0%
TGAAACTGTAGGGTACAAAA+TGG - chr5_1:23927365-23927384 Msa0724830:CDS 35.0%
! TGTAGGGTACAAAATGGATT+TGG - chr5_1:23927371-23927390 Msa0724830:CDS 35.0%
ATTTGGACCTTTGTATGTGT+TGG - chr5_1:23927388-23927407 Msa0724830:CDS 35.0%
GCACTGAGAAAGAAATAGAA+TGG - chr5_1:23927410-23927429 Msa0724830:CDS 35.0%
TGTCATTCATTATATGGGTG+AGG + chr5_1:23927554-23927573 None:intergenic 35.0%
TGAATGACATTAGGATGCAT+AGG - chr5_1:23927565-23927584 Msa0724830:CDS 35.0%
! GATTGTTGTTGGGAGTTTGA+TGG + chr5_1:23922284-23922303 None:intergenic 40.0%
!! GAGAATTGACGGATTGTTGT+TGG + chr5_1:23922295-23922314 None:intergenic 40.0%
GATTGCGAGATGAGAATTGA+CGG + chr5_1:23922306-23922325 None:intergenic 40.0%
AAAAGGGTTGAAGAAGGAGA+AGG - chr5_1:23922504-23922523 Msa0724830:three_prime_UTR 40.0%
AAGAAACAGAAGTTGCATGC+TGG - chr5_1:23922592-23922611 Msa0724830:three_prime_UTR 40.0%
AGAAACAGAAGTTGCATGCT+GGG - chr5_1:23922593-23922612 Msa0724830:three_prime_UTR 40.0%
AAACTTGAGGAGGCGAAATT+GGG - chr5_1:23922637-23922656 Msa0724830:three_prime_UTR 40.0%
!! TGAAGTATTGACACAGACAC+CGG - chr5_1:23922786-23922805 Msa0724830:three_prime_UTR 40.0%
! AGAGTGTTTAGGATAGCTCA+TGG - chr5_1:23923196-23923215 Msa0724830:CDS 40.0%
TAGCTCATGGAAACAGCTTA+TGG - chr5_1:23923209-23923228 Msa0724830:intron 40.0%
AGCTCATGGAAACAGCTTAT+GGG - chr5_1:23923210-23923229 Msa0724830:intron 40.0%
! ACAGAAAGAGCTTTATGAGC+CGG + chr5_1:23923596-23923615 None:intergenic 40.0%
CATTGTGTACATGTCATTGC+TGG + chr5_1:23923915-23923934 None:intergenic 40.0%
! AGAGCATTTAGGATCAGCAT+AGG + chr5_1:23924029-23924048 None:intergenic 40.0%
GGTTACAAACAATACGTGCT+GGG + chr5_1:23924062-23924081 None:intergenic 40.0%
AGGTTACAAACAATACGTGC+TGG + chr5_1:23924063-23924082 None:intergenic 40.0%
! AACCTATGGCTTGTGTTTCT+CGG - chr5_1:23924078-23924097 Msa0724830:intron 40.0%
TCATCGCCATCTATAACCTA+GGG + chr5_1:23924465-23924484 None:intergenic 40.0%
TTCATCGCCATCTATAACCT+AGG + chr5_1:23924466-23924485 None:intergenic 40.0%
ATGTTGAGAAAGGGTAGCAA+AGG - chr5_1:23925161-23925180 Msa0724830:intron 40.0%
ACGCACACTGAAATAGATGT+AGG - chr5_1:23925343-23925362 Msa0724830:intron 40.0%
! TTTAGAGGCTATGCCTGTTT+TGG - chr5_1:23925799-23925818 Msa0724830:intron 40.0%
CACGAAACACGAAGAAAAAG+AGG + chr5_1:23925860-23925879 None:intergenic 40.0%
! CTCTTTTTCTTCGTGTTTCG+TGG - chr5_1:23925858-23925877 Msa0724830:intron 40.0%
!! AAATAAAGATAGCGGGCTAC+CGG + chr5_1:23926126-23926145 None:intergenic 40.0%
ATGTTGTCAGTCCTGTATAG+CGG + chr5_1:23926165-23926184 None:intergenic 40.0%
ACAACTATGATGCCATGAGA+TGG + chr5_1:23926196-23926215 None:intergenic 40.0%
!! CTGCAGTTGATAAGAGGATT+AGG + chr5_1:23926281-23926300 None:intergenic 40.0%
TGGGTGGAAATACATGATTG+AGG - chr5_1:23926652-23926671 Msa0724830:intron 40.0%
GTGGAAATACATGATTGAGG+TGG - chr5_1:23926655-23926674 Msa0724830:intron 40.0%
GAAATACATGATTGAGGTGG+TGG - chr5_1:23926658-23926677 Msa0724830:intron 40.0%
TCTTTGAATGGTTGGGTAGA+GGG + chr5_1:23926740-23926759 None:intergenic 40.0%
TTCTTTGAATGGTTGGGTAG+AGG + chr5_1:23926741-23926760 None:intergenic 40.0%
GATAAGAGTTACATTCCCCT+TGG - chr5_1:23926776-23926795 Msa0724830:intron 40.0%
GGTTAAGGTTCAAACCATGA+AGG - chr5_1:23926976-23926995 Msa0724830:intron 40.0%
GACAATGTGATGTACTGTGT+TGG - chr5_1:23927003-23927022 Msa0724830:intron 40.0%
AATGTGATGTACTGTGTTGG+TGG - chr5_1:23927006-23927025 Msa0724830:intron 40.0%
GAAAATATTGCTGCCCAGAT+TGG + chr5_1:23927034-23927053 None:intergenic 40.0%
GCAGTATGTACAGTGAGTTA+AGG - chr5_1:23927095-23927114 Msa0724830:intron 40.0%
AACGTATCTTCAAGAGGGAA+AGG - chr5_1:23927329-23927348 Msa0724830:CDS 40.0%
!! TGAGGATTTCAAGCTTTGGA+GGG + chr5_1:23927536-23927555 None:intergenic 40.0%
GTTTGGTCTAATCCTAGTGT+CGG + chr5_1:23927592-23927611 None:intergenic 40.0%
TGTTGTTGGGAGTTTGATGG+TGG + chr5_1:23922281-23922300 None:intergenic 45.0%
AAGACGAATGGAACGAAGCA+TGG - chr5_1:23922338-23922357 Msa0724830:three_prime_UTR 45.0%
AGACGAATGGAACGAAGCAT+GGG - chr5_1:23922339-23922358 Msa0724830:three_prime_UTR 45.0%
!! GTCTTTGGTGTTAGGTCTTG+TGG + chr5_1:23922379-23922398 None:intergenic 45.0%
AAATTCACGTCTCCTTCCCA+TGG + chr5_1:23922409-23922428 None:intergenic 45.0%
AGGAGACGTGAATTTCGCTT+CGG - chr5_1:23922414-23922433 Msa0724830:three_prime_UTR 45.0%
GAATTTCGCTTCGGAAGAAG+TGG - chr5_1:23922423-23922442 Msa0724830:three_prime_UTR 45.0%
GAGGAGAAAAGGGTTGAAGA+AGG - chr5_1:23922498-23922517 Msa0724830:three_prime_UTR 45.0%
GTTGAAGAAGGAGAAGGTTG+AGG - chr5_1:23922510-23922529 Msa0724830:three_prime_UTR 45.0%
GTTGAGGAGGAGAATGTGAA+AGG - chr5_1:23922526-23922545 Msa0724830:three_prime_UTR 45.0%
AGGAGGAGAATGTGAAAGGT+GGG - chr5_1:23922530-23922549 Msa0724830:three_prime_UTR 45.0%
GGAGATTGAGAAACTTGAGG+AGG - chr5_1:23922627-23922646 Msa0724830:three_prime_UTR 45.0%
GAAACTTGAGGAGGCGAAAT+TGG - chr5_1:23922636-23922655 Msa0724830:three_prime_UTR 45.0%
AACTTGAGGAGGCGAAATTG+GGG - chr5_1:23922638-23922657 Msa0724830:three_prime_UTR 45.0%
ATCGCATACGTGTCAGTTTC+TGG + chr5_1:23923470-23923489 None:intergenic 45.0%
! AAGAGCTTTATGAGCCGGTT+TGG + chr5_1:23923591-23923610 None:intergenic 45.0%
TGTGTACATGTCATTGCTGG+TGG + chr5_1:23923912-23923931 None:intergenic 45.0%
GATCGAATGTAACGACACGT+TGG - chr5_1:23923952-23923971 Msa0724830:intron 45.0%
ATGTAACGACACGTTGGTGT+TGG - chr5_1:23923958-23923977 Msa0724830:intron 45.0%
! TGTAACGACACGTTGGTGTT+GGG - chr5_1:23923959-23923978 Msa0724830:intron 45.0%
! ACCTATGGCTTGTGTTTCTC+GGG - chr5_1:23924079-23924098 Msa0724830:intron 45.0%
CCATCTATAACCTAGGGACT+AGG + chr5_1:23924459-23924478 None:intergenic 45.0%
CCTAGTCCCTAGGTTATAGA+TGG - chr5_1:23924456-23924475 Msa0724830:intron 45.0%
ATGTGTAGAGAAGATGTGCG+AGG - chr5_1:23924698-23924717 Msa0724830:intron 45.0%
TGAGAAAGGGTAGCAAAGGT+AGG - chr5_1:23925165-23925184 Msa0724830:intron 45.0%
CGTGTTCCAAAAGCAAGTAG+TGG - chr5_1:23925493-23925512 Msa0724830:intron 45.0%
CAAAAGCAAGTAGTGGTCAC+CGG - chr5_1:23925500-23925519 Msa0724830:intron 45.0%
AAAAGCAAGTAGTGGTCACC+GGG - chr5_1:23925501-23925520 Msa0724830:intron 45.0%
GTTGCATTCTTGTTGCAGCA+TGG - chr5_1:23925523-23925542 Msa0724830:intron 45.0%
TTCACACCGAAGAGAAGACT+TGG + chr5_1:23925652-23925671 None:intergenic 45.0%
! AAGTCTTCTCTTCGGTGTGA+AGG - chr5_1:23925651-23925670 Msa0724830:intron 45.0%
GGGAAAGTGAAGAGTTGAGA+GGG + chr5_1:23925683-23925702 None:intergenic 45.0%
AGGGAAAGTGAAGAGTTGAG+AGG + chr5_1:23925684-23925703 None:intergenic 45.0%
GCATAGCCTCTAAACAAAGG+AGG + chr5_1:23925793-23925812 None:intergenic 45.0%
CAGGCATAGCCTCTAAACAA+AGG + chr5_1:23925796-23925815 None:intergenic 45.0%
AAACAGAGTGGCTCCAAAAC+AGG + chr5_1:23925815-23925834 None:intergenic 45.0%
!! AATAAAGATAGCGGGCTACC+GGG + chr5_1:23926125-23926144 None:intergenic 45.0%
TCAAAAACATGCCTGATGGG+TGG - chr5_1:23926357-23926376 Msa0724830:intron 45.0%
! CAAAAACATGCCTGATGGGT+GGG - chr5_1:23926358-23926377 Msa0724830:intron 45.0%
GATATTGTTTCCCACCCATC+AGG + chr5_1:23926371-23926390 None:intergenic 45.0%
AGACACACATATTTAGCCGG+AGG - chr5_1:23926618-23926637 Msa0724830:intron 45.0%
AGAGTTACATTCCCCTTGGT+AGG - chr5_1:23926780-23926799 Msa0724830:intron 45.0%
! GAGATTTTCAGCTGCCATTC+CGG + chr5_1:23926926-23926945 None:intergenic 45.0%
GGAATGGCAGCTGAAAATCT+CGG - chr5_1:23926925-23926944 Msa0724830:intron 45.0%
CTCAGTGCCAACACATACAA+AGG + chr5_1:23927398-23927417 None:intergenic 45.0%
GTGAGGATGACCAAAAGCTT+TGG + chr5_1:23927507-23927526 None:intergenic 45.0%
! GTGAGGATTTCAAGCTTTGG+AGG + chr5_1:23927537-23927556 None:intergenic 45.0%
TGGGTGAGGATTTCAAGCTT+TGG + chr5_1:23927540-23927559 None:intergenic 45.0%
TCATCTCGCAATCCTCGAAG+CGG - chr5_1:23922313-23922332 Msa0724830:three_prime_UTR 50.0%
!! GTGCTCGTGTCTTTGGTGTT+AGG + chr5_1:23922387-23922406 None:intergenic 50.0%
ACCAAAGACACGAGCACCAT+GGG - chr5_1:23922390-23922409 Msa0724830:three_prime_UTR 50.0%
TTTCGCTTCGGAAGAAGTGG+CGG - chr5_1:23922426-23922445 Msa0724830:three_prime_UTR 50.0%
GAAGAAGGAGAAGGTTGAGG+AGG - chr5_1:23922513-23922532 Msa0724830:three_prime_UTR 50.0%
GAGGAGGAGAATGTGAAAGG+TGG - chr5_1:23922529-23922548 Msa0724830:three_prime_UTR 50.0%
AGAAGTTGCATGCTGGGCTT+TGG - chr5_1:23922599-23922618 Msa0724830:three_prime_UTR 50.0%
ACTTGAGGAGGCGAAATTGG+GGG - chr5_1:23922639-23922658 Msa0724830:three_prime_UTR 50.0%
TAGACGTGTCAGTGTTCGTC+CGG + chr5_1:23922808-23922827 None:intergenic 50.0%
!! AAGAGCTCTAAGAGCCTGCT+TGG + chr5_1:23923141-23923160 None:intergenic 50.0%
! GCATACGTGTCAGTTTCTGG+CGG + chr5_1:23923467-23923486 None:intergenic 50.0%
!! ACGTTGGTGTTGGGACATGT+CGG - chr5_1:23923968-23923987 Msa0724830:intron 50.0%
ACCCGAGAAACACAAGCCAT+AGG + chr5_1:23924083-23924102 None:intergenic 50.0%
! GAATAGCTTGCCTAGTCCCT+AGG - chr5_1:23924446-23924465 Msa0724830:intron 50.0%
AACGCAACATGGCAGTGTGA+CGG + chr5_1:23925443-23925462 None:intergenic 50.0%
! CGGTGACCACTACTTGCTTT+TGG + chr5_1:23925502-23925521 None:intergenic 50.0%
GCTGCAACAAGAATGCAACC+CGG + chr5_1:23925522-23925541 None:intergenic 50.0%
AGTGAAGAGTTGAGAGGGTG+TGG + chr5_1:23925678-23925697 None:intergenic 50.0%
! TGGTTTGCACTTCACAGCAG+AGG + chr5_1:23925726-23925745 None:intergenic 50.0%
TGAAGTGCAAACCAGACGCT+GGG - chr5_1:23925732-23925751 Msa0724830:intron 50.0%
CCTCTAAACAAAGGAGGCGA+TGG + chr5_1:23925787-23925806 None:intergenic 50.0%
! CCATCGCCTCCTTTGTTTAG+AGG - chr5_1:23925784-23925803 Msa0724830:intron 50.0%
ACAGGGAGACAGAAACAGAG+TGG + chr5_1:23925827-23925846 None:intergenic 50.0%
CACACATATTTAGCCGGAGG+AGG - chr5_1:23926621-23926640 Msa0724830:intron 50.0%
TGGGACCAAATGCCAAGAGA+GGG - chr5_1:23926678-23926697 Msa0724830:intron 50.0%
ACCAAATGCCAAGAGAGGGA+AGG - chr5_1:23926682-23926701 Msa0724830:intron 50.0%
CCAAATGCCAAGAGAGGGAA+GGG - chr5_1:23926683-23926702 Msa0724830:intron 50.0%
GTAGAGGGATCAGAGAGACT+TGG + chr5_1:23926725-23926744 None:intergenic 50.0%
ACCAGGCTATCTCCTACCAA+GGG + chr5_1:23926795-23926814 None:intergenic 50.0%
TGATCACTGCAACTTTGCCG+AGG - chr5_1:23926895-23926914 Msa0724830:intron 50.0%
!! TGTGTTGGTGGTGCCAATCT+GGG - chr5_1:23927018-23927037 Msa0724830:intron 50.0%
!! TTCAAGCTTTGGAGGGCTAG+AGG + chr5_1:23927529-23927548 None:intergenic 50.0%
CATTCGTCTTCACCGCTTCG+AGG + chr5_1:23922328-23922347 None:intergenic 55.0%
CTCGAAGCGGTGAAGACGAA+TGG - chr5_1:23922326-23922345 Msa0724830:three_prime_UTR 55.0%
ACGAAGCATGGGAATCAGCG+TGG - chr5_1:23922350-23922369 Msa0724830:three_prime_UTR 55.0%
CACCAAAGACACGAGCACCA+TGG - chr5_1:23922389-23922408 Msa0724830:three_prime_UTR 55.0%
TCCCATGGTGCTCGTGTCTT+TGG + chr5_1:23922394-23922413 None:intergenic 55.0%
AAGACACGAGCACCATGGGA+AGG - chr5_1:23922394-23922413 Msa0724830:three_prime_UTR 55.0%
!! GCATGCTGGGCTTTGGAGTA+AGG - chr5_1:23922606-23922625 Msa0724830:three_prime_UTR 55.0%
CTTGAGGAGGCGAAATTGGG+GGG - chr5_1:23922640-23922659 Msa0724830:three_prime_UTR 55.0%
TTGAGGAGGCGAAATTGGGG+GGG - chr5_1:23922641-23922660 Msa0724830:three_prime_UTR 55.0%
ACTGCCATGTTGCGTTGCAG+TGG - chr5_1:23925447-23925466 Msa0724830:intron 55.0%
CTGCCATGTTGCGTTGCAGT+GGG - chr5_1:23925448-23925467 Msa0724830:intron 55.0%
TGGAACACGACACTGTGCGT+GGG + chr5_1:23925482-23925501 None:intergenic 55.0%
TTGGAACACGACACTGTGCG+TGG + chr5_1:23925483-23925502 None:intergenic 55.0%
GTGAAGTGCAAACCAGACGC+TGG - chr5_1:23925731-23925750 Msa0724830:intron 55.0%
GAAGTGCAAACCAGACGCTG+GGG - chr5_1:23925733-23925752 Msa0724830:intron 55.0%
GCGATGGCAGTGGTTAGAGA+CGG + chr5_1:23925771-23925790 None:intergenic 55.0%
AACAAAGGAGGCGATGGCAG+TGG + chr5_1:23925781-23925800 None:intergenic 55.0%
! GTCAGTCCTGTATAGCGGAG+CGG + chr5_1:23926160-23926179 None:intergenic 55.0%
! ACCCATCAATTGGCCTCCTC+CGG + chr5_1:23926637-23926656 None:intergenic 55.0%
GTGGGACCAAATGCCAAGAG+AGG - chr5_1:23926677-23926696 Msa0724830:intron 55.0%
CCCTTCCCTCTCTTGGCATT+TGG + chr5_1:23926686-23926705 None:intergenic 55.0%
AACACTGCCCTTCCCTCTCT+TGG + chr5_1:23926693-23926712 None:intergenic 55.0%
CCAGGCTATCTCCTACCAAG+GGG + chr5_1:23926794-23926813 None:intergenic 55.0%
GACCAGGCTATCTCCTACCA+AGG + chr5_1:23926796-23926815 None:intergenic 55.0%
CTCTGCAGAGGTCATTGCAG+TGG - chr5_1:23926833-23926852 Msa0724830:intron 55.0%
CAACTTTGCCGAGGTGTGAC+CGG - chr5_1:23926904-23926923 Msa0724830:intron 55.0%
!! CTGTGTTGGTGGTGCCAATC+TGG - chr5_1:23927017-23927036 Msa0724830:intron 55.0%
GGATGCATAGGACCGACACT+AGG - chr5_1:23927577-23927596 Msa0724830:CDS 55.0%
!! TTCGGAAGAAGTGGCGGACG+CGG - chr5_1:23922432-23922451 Msa0724830:three_prime_UTR 60.0%
! AAATTGGGGGGGTGTGGTGG+TGG - chr5_1:23922652-23922671 Msa0724830:three_prime_UTR 60.0%
GCAACATGGCAGTGTGACGG+CGG + chr5_1:23925440-23925459 None:intergenic 60.0%
CCACCCACTGCAACGCAACA+TGG + chr5_1:23925454-23925473 None:intergenic 60.0%
CCATGTTGCGTTGCAGTGGG+TGG - chr5_1:23925451-23925470 Msa0724830:intron 60.0%
TGTTGCGTTGCAGTGGGTGG+CGG - chr5_1:23925454-23925473 Msa0724830:intron 60.0%
GAACACGACACTGTGCGTGG+GGG + chr5_1:23925480-23925499 None:intergenic 60.0%
GGAACACGACACTGTGCGTG+GGG + chr5_1:23925481-23925500 None:intergenic 60.0%
GGCAGTGGTTAGAGACGGCT+GGG + chr5_1:23925766-23925785 None:intergenic 60.0%
TGGCAGTGGTTAGAGACGGC+TGG + chr5_1:23925767-23925786 None:intergenic 60.0%
TTAGCGGCCATCCTGCAACC+CGG - chr5_1:23926104-23926123 Msa0724830:intron 60.0%
AGCCGGAGGAGGCCAATTGA+TGG - chr5_1:23926632-23926651 Msa0724830:intron 60.0%
GCCGGAGGAGGCCAATTGAT+GGG - chr5_1:23926633-23926652 Msa0724830:intron 60.0%
GGAGGAGGCCAATTGATGGG+TGG - chr5_1:23926636-23926655 Msa0724830:intron 60.0%
CCCCTTGGTAGGAGATAGCC+TGG - chr5_1:23926791-23926810 Msa0724830:intron 60.0%
TTGCCGAGGTGTGACCGGAA+TGG - chr5_1:23926909-23926928 Msa0724830:intron 60.0%
CTGCCATTCCGGTCACACCT+CGG + chr5_1:23926915-23926934 None:intergenic 60.0%
!! GCTTTGGAGGGCTAGAGGTG+AGG + chr5_1:23927524-23927543 None:intergenic 60.0%
GAGGCGAAATTGGGGGGGTG+TGG - chr5_1:23922646-23922665 Msa0724830:three_prime_UTR 65.0%
! GCGAAATTGGGGGGGTGTGG+TGG - chr5_1:23922649-23922668 Msa0724830:three_prime_UTR 65.0%
!! GGGGGTGTGGTGGTGGTGAA+GGG - chr5_1:23922659-23922678 Msa0724830:three_prime_UTR 65.0%
!! GGGGTGTGGTGGTGGTGAAG+GGG - chr5_1:23922660-23922679 Msa0724830:three_prime_UTR 65.0%
!! ATAGCGGGCTACCGGGTTGC+AGG + chr5_1:23926118-23926137 None:intergenic 65.0%
!! AGTGGCGGACGCGGAGACGA+AGG - chr5_1:23922441-23922460 Msa0724830:three_prime_UTR 70.0%
!! GGGGGGTGTGGTGGTGGTGA+AGG - chr5_1:23922658-23922677 Msa0724830:three_prime_UTR 70.0%
GGGACTGAGTCCCCAGCGTC+TGG + chr5_1:23925746-23925765 None:intergenic 70.0%
CGGGCTACCGGGTTGCAGGA+TGG + chr5_1:23926114-23926133 None:intergenic 70.0%
GCTCGGCCGCTCCGCTATAC+AGG - chr5_1:23926151-23926170 Msa0724830:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 23922163 23927663 23922163 ID=Msa0724830;Name=Msa0724830
chr5_1 mRNA 23922163 23927663 23922163 ID=Msa0724830-mRNA-1;Parent=Msa0724830;Name=Msa0724830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=51|1|1|1|1|1|3|855|299
chr5_1 exon 23922163 23923224 23922163 ID=Msa0724830-mRNA-1:exon:8830;Parent=Msa0724830-mRNA-1
chr5_1 exon 23923339 23923525 23923339 ID=Msa0724830-mRNA-1:exon:8829;Parent=Msa0724830-mRNA-1
chr5_1 exon 23927107 23927663 23927107 ID=Msa0724830-mRNA-1:exon:8828;Parent=Msa0724830-mRNA-1
chr5_1 five_prime_UTR 23927613 23927663 23927613 ID=Msa0724830-mRNA-1:five_prime_utr;Parent=Msa0724830-mRNA-1
chr5_1 CDS 23927107 23927612 23927107 ID=Msa0724830-mRNA-1:cds;Parent=Msa0724830-mRNA-1
chr5_1 CDS 23923339 23923525 23923339 ID=Msa0724830-mRNA-1:cds;Parent=Msa0724830-mRNA-1
chr5_1 CDS 23923018 23923224 23923018 ID=Msa0724830-mRNA-1:cds;Parent=Msa0724830-mRNA-1
chr5_1 three_prime_UTR 23922163 23923017 23922163 ID=Msa0724830-mRNA-1:three_prime_utr;Parent=Msa0724830-mRNA-1
Gene Sequence

>Msa0724830

ATGCAAACCTTTCGAAGAATCACAACAACAGCAACAAAATCAAACCAATTCAAATCACTCTTCTCCACCATCAAACTCCCAACAACAATCCGTCAATTCTCATCTCGCAATCCTCGAAGCGGTGAAGACGAATGGAACGAAGCATGGGAATCAGCGTGGTTACCACAAGACCTAACACCAAAGACACGAGCACCATGGGAAGGAGACGTGAATTTCGCTTCGGAAGAAGTGGCGGACGCGGAGACGAAGGCGTTTGTTGAAGAGATGAATGAGAATTGGAATGAGAGGAGAAAAGGGTTGAAGAAGGAGAAGGTTGAGGAGGAGAATGTGAAAGGTGGGATTTATAGTTTGGAAAATATTAAGAAGGATTATAGGTTGAAGAAACAGAAGTTGCATGCTGGGCTTTGGAGTAAGGAGATTGAGAAACTTGAGGAGGCGAAATTGGGGGGGTGTGGTGGTGGTGAAGGGGATGATGATATTCAGAAATTGCTTGATAGTTGTTCTGATATTTTTGACTCCCACAATAATGATCTGAACAACGCAAAAGATCCAACTTCTGAATTCAAAAACATGCCTGATGGGTGGGAAACAATATCGAAAAATCAAGATGGAAATATATGGGAGATGTCCCAAAGAGAAGAAGATATACTTATGCAGGAATTCGAACGGAGAATTGCGTATAGCAAATTTCAGATTGCAAGTTTTATCAAGACACACATATTTAGCCGGAGGAGGCCAATTGATGGGTGGAAATACATGATTGAGGTGGTGGGACCAAATGCCAAGAGAGGGAAGGGCAGTGTTTCTAGAGTACCAAGTCTCTCTGATCCCTCTACCCAACCATTCAAAGAAGAGAAGACTTCAGTTGATAAGAGTTACATTCCCCTTGGTAGGAGATAG

Protein sequence

>Msa0724830

MQTFRRITTTATKSNQFKSLFSTIKLPTTIRQFSSRNPRSGEDEWNEAWESAWLPQDLTPKTRAPWEGDVNFASEEVADAETKAFVEEMNENWNERRKGLKKEKVEEENVKGGIYSLENIKKDYRLKKQKLHAGLWSKEIEKLEEAKLGGCGGGEGDDDIQKLLDSCSDIFDSHNNDLNNAKDPTSEFKNMPDGWETISKNQDGNIWEMSQREEDILMQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIEVVGPNAKRGKGSVSRVPSLSDPSTQPFKEEKTSVDKSYIPLGRR*