Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290190 | sp|P58728|SF3BB_ARATH | 88.312 | 77 | 9 | 0 | 1 | 77 | 1 | 77 | 9.31e-45 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290190 | G7IW51 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 6.65e-46 | 158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002380 | Msa1290190 | 0.802230 | 6.190805e-49 | -8.615850e-47 |
| Msa0006550 | Msa1290190 | 0.810987 | 8.768554e-51 | -8.615850e-47 |
| Msa0008410 | Msa1290190 | 0.814218 | 1.723486e-51 | -8.615850e-47 |
| Msa0027260 | Msa1290190 | 0.802762 | 4.809040e-49 | -8.615850e-47 |
| Msa0047980 | Msa1290190 | 0.809951 | 1.468192e-50 | -8.615850e-47 |
| Msa0064350 | Msa1290190 | 0.825181 | 5.391857e-54 | -8.615850e-47 |
| Msa0081230 | Msa1290190 | 0.807586 | 4.702484e-50 | -8.615850e-47 |
| Msa0095010 | Msa1290190 | 0.827296 | 1.691537e-54 | -8.615850e-47 |
| Msa0615870 | Msa1290190 | 0.822243 | 2.629688e-53 | -8.615850e-47 |
| Msa0625280 | Msa1290190 | 0.809714 | 1.651024e-50 | -8.615850e-47 |
| Msa0650190 | Msa1290190 | 0.800504 | 1.397202e-48 | -8.615850e-47 |
| Msa0650920 | Msa1290190 | 0.811516 | 6.734018e-51 | -8.615850e-47 |
| Msa0663900 | Msa1290190 | 0.836460 | 9.239080e-57 | -8.615850e-47 |
| Msa0670270 | Msa1290190 | 0.804115 | 2.521835e-49 | -8.615850e-47 |
| Msa0687630 | Msa1290190 | 0.813377 | 2.639343e-51 | -8.615850e-47 |
| Msa0692840 | Msa1290190 | 0.850232 | 1.940026e-60 | -8.615850e-47 |
| Msa0692940 | Msa1290190 | 0.833048 | 6.668294e-56 | -8.615850e-47 |
| Msa0713820 | Msa1290190 | 0.800920 | 1.149341e-48 | -8.615850e-47 |
| Msa0722020 | Msa1290190 | 0.802750 | 4.837515e-49 | -8.615850e-47 |
| Msa0750430 | Msa1290190 | 0.801253 | 9.825903e-49 | -8.615850e-47 |
| Msa0763070 | Msa1290190 | 0.802744 | 4.852106e-49 | -8.615850e-47 |
| Msa0771720 | Msa1290190 | 0.813089 | 3.054119e-51 | -8.615850e-47 |
| Msa0833310 | Msa1290190 | 0.818863 | 1.570050e-52 | -8.615850e-47 |
| Msa0148100 | Msa1290190 | 0.816376 | 5.709969e-52 | -8.615850e-47 |
| Msa0194480 | Msa1290190 | 0.806561 | 7.750528e-50 | -8.615850e-47 |
| Msa0199690 | Msa1290190 | 0.802490 | 5.474451e-49 | -8.615850e-47 |
| Msa0199880 | Msa1290190 | 0.836612 | 8.452355e-57 | -8.615850e-47 |
| Msa0225180 | Msa1290190 | 0.815674 | 8.192342e-52 | -8.615850e-47 |
| Msa1252740 | Msa1290190 | 0.801823 | 7.505897e-49 | -8.615850e-47 |
| Msa1254510 | Msa1290190 | 0.817259 | 3.618178e-52 | -8.615850e-47 |
| Msa1255040 | Msa1290190 | -0.802941 | 4.417245e-49 | -8.615850e-47 |
| Msa1267260 | Msa1290190 | 0.804107 | 2.531665e-49 | -8.615850e-47 |
| Msa1290190 | Msa1305710 | 0.804447 | 2.150540e-49 | -8.615850e-47 |
| Msa1290190 | Msa1307950 | 0.802579 | 5.247747e-49 | -8.615850e-47 |
| Msa1290190 | Msa1321630 | 0.805993 | 1.020681e-49 | -8.615850e-47 |
| Msa1290190 | Msa1340020 | 0.806340 | 8.626505e-50 | -8.615850e-47 |
| Msa1290190 | Msa1365150 | 0.809301 | 2.025050e-50 | -8.615850e-47 |
| Msa1290190 | Msa1367880 | 0.819427 | 1.168162e-52 | -8.615850e-47 |
| Msa1290190 | Msa1382780 | 0.800926 | 1.145921e-48 | -8.615850e-47 |
| Msa1290190 | Msa1387010 | 0.822373 | 2.453039e-53 | -8.615850e-47 |
| Msa1290190 | Msa1403800 | 0.818524 | 1.874556e-52 | -8.615850e-47 |
| Msa1290190 | Msa1404010 | 0.827910 | 1.205062e-54 | -8.615850e-47 |
| Msa1290190 | Msa1404190 | 0.819659 | 1.033884e-52 | -8.615850e-47 |
| Msa1290190 | Msa1416390 | 0.813223 | 2.853989e-51 | -8.615850e-47 |
| Msa0369220 | Msa1290190 | 0.801302 | 9.598067e-49 | -8.615850e-47 |
| Msa0385580 | Msa1290190 | 0.801835 | 7.463205e-49 | -8.615850e-47 |
| Msa0471590 | Msa1290190 | 0.801981 | 6.968103e-49 | -8.615850e-47 |
| Msa1000690 | Msa1290190 | 0.803450 | 3.466757e-49 | -8.615850e-47 |
| Msa1060220 | Msa1290190 | 0.805840 | 1.098930e-49 | -8.615850e-47 |
| Msa1091530 | Msa1290190 | 0.813825 | 2.104041e-51 | -8.615850e-47 |
| Msa1100720 | Msa1290190 | 0.801421 | 9.076643e-49 | -8.615850e-47 |
| Msa0241780 | Msa1290190 | 0.813080 | 3.068144e-51 | -8.615850e-47 |
| Msa0241800 | Msa1290190 | 0.824380 | 8.328459e-54 | -8.615850e-47 |
| Msa0242410 | Msa1290190 | 0.805466 | 1.317082e-49 | -8.615850e-47 |
| Msa0260830 | Msa1290190 | 0.805365 | 1.382437e-49 | -8.615850e-47 |
| Msa0284820 | Msa1290190 | 0.813859 | 2.067887e-51 | -8.615850e-47 |
| Msa0300120 | Msa1290190 | 0.848710 | 5.153849e-60 | -8.615850e-47 |
| Msa0311700 | Msa1290190 | 0.823161 | 1.607679e-53 | -8.615850e-47 |
| Msa0337650 | Msa1290190 | 0.800885 | 1.168142e-48 | -8.615850e-47 |
| Msa1126510 | Msa1290190 | 0.813387 | 2.626646e-51 | -8.615850e-47 |
| Msa1126770 | Msa1290190 | 0.816414 | 5.598626e-52 | -8.615850e-47 |
| Msa1134110 | Msa1290190 | 0.815039 | 1.133957e-51 | -8.615850e-47 |
| Msa1143840 | Msa1290190 | 0.812916 | 3.331574e-51 | -8.615850e-47 |
| Msa1165870 | Msa1290190 | 0.810227 | 1.280125e-50 | -8.615850e-47 |
| Msa1166860 | Msa1290190 | 0.800799 | 1.216650e-48 | -8.615850e-47 |
| Msa1217830 | Msa1290190 | 0.810252 | 1.264136e-50 | -8.615850e-47 |
| Msa1218600 | Msa1290190 | 0.808023 | 3.796542e-50 | -8.615850e-47 |
| Msa0485120 | Msa1290190 | 0.817167 | 3.795023e-52 | -8.615850e-47 |
| Msa0524500 | Msa1290190 | 0.806602 | 7.594599e-50 | -8.615850e-47 |
| Msa0552810 | Msa1290190 | 0.821738 | 3.441853e-53 | -8.615850e-47 |
| Msa0560470 | Msa1290190 | 0.803691 | 3.088731e-49 | -8.615850e-47 |
| Msa0581070 | Msa1290190 | 0.810818 | 9.541966e-51 | -8.615850e-47 |
| Msa0842830 | Msa1290190 | 0.804188 | 2.435201e-49 | -8.615850e-47 |
| Msa0847080 | Msa1290190 | 0.825742 | 3.971066e-54 | -8.615850e-47 |
| Msa0877410 | Msa1290190 | 0.809640 | 1.712532e-50 | -8.615850e-47 |
| Msa0900630 | Msa1290190 | 0.815467 | 9.110369e-52 | -8.615850e-47 |
| Msa0926460 | Msa1290190 | 0.813190 | 2.901342e-51 | -8.615850e-47 |
| Msa0965860 | Msa1290190 | 0.813534 | 2.438333e-51 | -8.615850e-47 |
| Msa0968590 | Msa1290190 | 0.803854 | 2.858235e-49 | -8.615850e-47 |
| Msa0974810 | Msa1290190 | 0.816526 | 5.284402e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290190 | MtrunA17_Chr3g0084311 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 1.28e-49 | 158 |
| Msa1290190 | MtrunA17_Chr3g0084301 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 1.28e-49 | 158 |
| Msa1290190 | MtrunA17_Chr8g0364261 | 97.403 | 77 | 2 | 0 | 1 | 77 | 1 | 77 | 1.61e-49 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290190 | AT4G14342.1 | 88.312 | 77 | 9 | 0 | 1 | 77 | 1 | 77 | 9.46e-46 | 149 |
| Msa1290190 | AT4G14342.2 | 87.013 | 77 | 10 | 0 | 1 | 77 | 1 | 77 | 3.79e-45 | 148 |
| Msa1290190 | AT3G23325.1 | 87.013 | 77 | 10 | 0 | 1 | 77 | 1 | 77 | 5.29e-45 | 147 |
Find 72 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAACTTTGGTTTGTTATT+TGG | 0.113693 | 8_3:-44839435 | Msa1290190:CDS |
| TCTGACCTGCGAGCAGAAAA+TGG | 0.219378 | 8_3:+44839076 | None:intergenic |
| CTAAGAATGCTCCTGGAAAT+AGG | 0.305183 | 8_3:-44838627 | Msa1290190:CDS |
| CTTAAACATGTTCATGGTAG+TGG | 0.305336 | 8_3:+44838498 | None:intergenic |
| AGATGACGATTAGGCGTTCT+TGG | 0.308084 | 8_3:-44838348 | Msa1290190:CDS |
| ATCCTTCTTAAACATGTTCA+TGG | 0.333864 | 8_3:+44838492 | None:intergenic |
| CTATTTCCAGGAGCATTCTT+AGG | 0.337930 | 8_3:+44838628 | None:intergenic |
| CATTGAACATGATGTTATAA+AGG | 0.351672 | 8_3:-44838404 | Msa1290190:CDS |
| TTTGGTTTGTTATTTGGAAA+TGG | 0.364058 | 8_3:-44839429 | Msa1290190:intron |
| ACACAATCACTCCTATTTCC+AGG | 0.369049 | 8_3:+44838616 | None:intergenic |
| CTTTATAACATCATGTTCAA+TGG | 0.388456 | 8_3:+44838405 | None:intergenic |
| TTGCGTTGCAGGCGAGTGAT+AGG | 0.389437 | 8_3:-44840336 | Msa1290190:intron |
| CTTACTTAGTTTATAAAAGA+AGG | 0.390322 | 8_3:-44840556 | Msa1290190:five_prime_UTR |
| TGCAATTTGTTGCCGCAAAT+AGG | 0.398954 | 8_3:-44839479 | Msa1290190:CDS |
| ACATCATGTTCAATGGGATT+AGG | 0.403952 | 8_3:+44838412 | None:intergenic |
| TAGAAAAGTAAGAAAGTAAA+GGG | 0.419141 | 8_3:+44840185 | None:intergenic |
| GAGTATTAGTACTCAAACTT+TGG | 0.420355 | 8_3:-44839447 | Msa1290190:CDS |
| ATCGCTCAAAACGAATCTAT+TGG | 0.432806 | 8_3:-44840163 | Msa1290190:CDS |
| CGCGAGTAGAGTAGGGTTTG+AGG | 0.433467 | 8_3:-44840484 | Msa1290190:five_prime_UTR |
| TCTAACCTGCGAGCAGAAAA+CGG | 0.434191 | 8_3:+44839046 | None:intergenic |
| CTCTCCTTGTCACCTATTTG+CGG | 0.435540 | 8_3:+44839467 | None:intergenic |
| ATGTATATTTGAGTTTAAGA+TGG | 0.437962 | 8_3:-44839176 | Msa1290190:CDS |
| TTTATAACATCATGTTCAAT+GGG | 0.440066 | 8_3:+44838406 | None:intergenic |
| TGTATATTTGAGTTTAAGAT+GGG | 0.452202 | 8_3:-44839175 | Msa1290190:CDS |
| ATAGAAAAGTAAGAAAGTAA+AGG | 0.454525 | 8_3:+44840184 | None:intergenic |
| CAAGCTAAATACGTTGGAAC+TGG | 0.455380 | 8_3:-44840283 | Msa1290190:CDS |
| ATGTCTCGTCTAATAATGAA+TGG | 0.462306 | 8_3:-44838456 | Msa1290190:CDS |
| CTGATATCAACAGATTTGAA+TGG | 0.473717 | 8_3:-44840255 | Msa1290190:CDS |
| AAAGAAAATAAACGAGAGGC+AGG | 0.480928 | 8_3:-44840453 | Msa1290190:five_prime_UTR |
| AGCTTGAAGATGCTCAAGTT+GGG | 0.482407 | 8_3:+44840300 | None:intergenic |
| CTGACCTGCGAGCAGAAAAT+GGG | 0.493072 | 8_3:+44839077 | None:intergenic |
| CGCGTGCAGAAATCAGAAGA+TGG | 0.496930 | 8_3:+44839113 | None:intergenic |
| CTAACCTGCGAGCAGAAAAC+GGG | 0.500124 | 8_3:+44839047 | None:intergenic |
| AGTAAGAAAGTAAAGGGTAA+TGG | 0.502423 | 8_3:+44840191 | None:intergenic |
| TAGCTTGAAGATGCTCAAGT+TGG | 0.503852 | 8_3:+44840299 | None:intergenic |
| AAGGGAAAGCGGTGAAGTGG+AGG | 0.509855 | 8_3:-44838578 | Msa1290190:CDS |
| ACAAAGCCTAAGAATGCTCC+TGG | 0.510487 | 8_3:-44838634 | Msa1290190:CDS |
| TTGTTTCTATAGCGAAGGAC+AGG | 0.513579 | 8_3:+44838653 | None:intergenic |
| TTAAACATGTTCATGGTAGT+GGG | 0.514094 | 8_3:+44838499 | None:intergenic |
| GCGAGTAGAGTAGGGTTTGA+GGG | 0.518608 | 8_3:-44840483 | Msa1290190:five_prime_UTR |
| GCAAAGACGCGAGTAGAGTA+GGG | 0.519914 | 8_3:-44840491 | Msa1290190:five_prime_UTR |
| GTCTAATAATGAATGGGTTG+TGG | 0.525184 | 8_3:-44838449 | Msa1290190:CDS |
| AAGAGTTGAGACATTAACAT+TGG | 0.532317 | 8_3:-44840515 | Msa1290190:five_prime_UTR |
| TTAGTTTATAAAAGAAGGAT+CGG | 0.533235 | 8_3:-44840551 | Msa1290190:five_prime_UTR |
| TACCATGAACATGTTTAAGA+AGG | 0.533995 | 8_3:-44838494 | Msa1290190:CDS |
| AGCAAAGACGCGAGTAGAGT+AGG | 0.534461 | 8_3:-44840492 | Msa1290190:five_prime_UTR |
| TTCTAGAAGAGATGACGATT+AGG | 0.538854 | 8_3:-44838357 | Msa1290190:CDS |
| CTCAAATATACATCTTTCTG+AGG | 0.541953 | 8_3:+44839186 | None:intergenic |
| TCTCAGATTGCTACTAGTGA+GGG | 0.545698 | 8_3:-44838695 | Msa1290190:intron |
| ATCGTCATCTCTTCTAGAAG+TGG | 0.546546 | 8_3:+44838361 | None:intergenic |
| GATAGCTATGCTTCATACAT+TGG | 0.549071 | 8_3:-44840214 | Msa1290190:CDS |
| TGATATCAACAGATTTGAAT+GGG | 0.559675 | 8_3:-44840254 | Msa1290190:CDS |
| CATCTTCTGATTTCTGCACG+CGG | 0.560038 | 8_3:-44839112 | Msa1290190:CDS |
| GAGTTTAAGATGGGAACAGT+GGG | 0.560968 | 8_3:-44839166 | Msa1290190:CDS |
| ACGAGAGGCAGGCAATATGC+AGG | 0.561824 | 8_3:-44840442 | Msa1290190:intron |
| AGGCTTTGTTTCTATAGCGA+AGG | 0.562793 | 8_3:+44838648 | None:intergenic |
| ATCTTCTGATTTCTGCACGC+GGG | 0.577919 | 8_3:-44839111 | Msa1290190:CDS |
| AAGATGGGAACAGTGGGTCA+TGG | 0.581261 | 8_3:-44839160 | Msa1290190:CDS |
| CATCTTCAAGCTAAATACGT+TGG | 0.583881 | 8_3:-44840289 | Msa1290190:CDS |
| GCGTGCAGAAATCAGAAGAT+GGG | 0.589773 | 8_3:+44839114 | None:intergenic |
| TTCTCAGATTGCTACTAGTG+AGG | 0.597874 | 8_3:-44838696 | Msa1290190:intron |
| ACATGATGTTATAAAGGATG+AGG | 0.598600 | 8_3:-44838398 | Msa1290190:CDS |
| AGGGAAAGCGGTGAAGTGGA+GGG | 0.601469 | 8_3:-44838577 | Msa1290190:CDS |
| CATGATGTTATAAAGGATGA+GGG | 0.610571 | 8_3:-44838397 | Msa1290190:CDS |
| TGTCTCGTCTAATAATGAAT+GGG | 0.616497 | 8_3:-44838455 | Msa1290190:CDS |
| TGAGTTTAAGATGGGAACAG+TGG | 0.616867 | 8_3:-44839167 | Msa1290190:CDS |
| GTTTATAAAAGAAGGATCGG+TGG | 0.621285 | 8_3:-44840548 | Msa1290190:five_prime_UTR |
| AAGAAAAGAAAATAAACGAG+AGG | 0.622646 | 8_3:-44840457 | Msa1290190:five_prime_UTR |
| TAATAATGAATGGGTTGTGG+CGG | 0.624094 | 8_3:-44838446 | Msa1290190:CDS |
| AAGATGGGAATCTCTTTCTG+AGG | 0.624344 | 8_3:+44839129 | None:intergenic |
| GTTGCCGCAAATAGGTGACA+AGG | 0.651430 | 8_3:-44839471 | Msa1290190:CDS |
| GATGTTATAAAGGATGAGGG+TGG | 0.702090 | 8_3:-44838394 | Msa1290190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTTATTAGAAATAAAT+AGG | + | chr8_3:44839645-44839664 | None:intergenic | 10.0% |
| !!! | AATAATCCTATTTTTAAAAT+GGG | + | chr8_3:44839905-44839924 | None:intergenic | 10.0% |
| !!! | AAATAATCCTATTTTTAAAA+TGG | + | chr8_3:44839906-44839925 | None:intergenic | 10.0% |
| !!! | ATTTTAAAAATAGGATTATT+TGG | - | chr8_3:44839905-44839924 | Msa1290190:intron | 10.0% |
| !!! | GATTTAATTATTTTAAAAAC+AGG | - | chr8_3:44839956-44839975 | Msa1290190:intron | 10.0% |
| !!! | GTATTTTATTAGAAATAAAT+AGG | + | chr8_3:44839645-44839664 | None:intergenic | 10.0% |
| !!! | AATAATCCTATTTTTAAAAT+GGG | + | chr8_3:44839905-44839924 | None:intergenic | 10.0% |
| !!! | AAATAATCCTATTTTTAAAA+TGG | + | chr8_3:44839906-44839925 | None:intergenic | 10.0% |
| !!! | ATTTTAAAAATAGGATTATT+TGG | - | chr8_3:44839905-44839924 | Msa1290190:intron | 10.0% |
| !!! | GATTTAATTATTTTAAAAAC+AGG | - | chr8_3:44839956-44839975 | Msa1290190:intron | 10.0% |
| !!! | AAACAAAATTACTTGTTAAT+TGG | - | chr8_3:44838827-44838846 | Msa1290190:intron | 15.0% |
| !!! | TGTTTTTTATACTGTTAAAT+TGG | - | chr8_3:44838872-44838891 | Msa1290190:intron | 15.0% |
| !!! | TCTTCTCTTAAAAATATTTT+TGG | + | chr8_3:44840358-44840377 | None:intergenic | 15.0% |
| !!! | AATATTTTTAAGAGAAGATT+TGG | - | chr8_3:44840360-44840379 | Msa1290190:intron | 15.0% |
| !!! | AAACAAAATTACTTGTTAAT+TGG | - | chr8_3:44838827-44838846 | Msa1290190:intron | 15.0% |
| !!! | TGTTTTTTATACTGTTAAAT+TGG | - | chr8_3:44838872-44838891 | Msa1290190:intron | 15.0% |
| !!! | TCTTCTCTTAAAAATATTTT+TGG | + | chr8_3:44840358-44840377 | None:intergenic | 15.0% |
| !!! | AATATTTTTAAGAGAAGATT+TGG | - | chr8_3:44840360-44840379 | Msa1290190:intron | 15.0% |
| !! | TTAGTTTATAAAAGAAGGAT+CGG | - | chr8_3:44838338-44838357 | Msa1290190:CDS | 20.0% |
| !! | TAGAAAAGTAAGAAAGTAAA+GGG | + | chr8_3:44838707-44838726 | None:intergenic | 20.0% |
| !! | ATAGAAAAGTAAGAAAGTAA+AGG | + | chr8_3:44838708-44838727 | None:intergenic | 20.0% |
| !!! | TTTTATACTGTTAAATTGGA+AGG | - | chr8_3:44838876-44838895 | Msa1290190:intron | 20.0% |
| !! | TTTATACTGTTAAATTGGAA+GGG | - | chr8_3:44838877-44838896 | Msa1290190:intron | 20.0% |
| !!! | TTCCTATGATTTTTAAATCA+CGG | + | chr8_3:44839508-44839527 | None:intergenic | 20.0% |
| !!! | ATTTTTTGAAGATATGAATC+TGG | + | chr8_3:44839667-44839686 | None:intergenic | 20.0% |
| !!! | ATGTATATTTGAGTTTAAGA+TGG | - | chr8_3:44839713-44839732 | Msa1290190:intron | 20.0% |
| !!! | TGTATATTTGAGTTTAAGAT+GGG | - | chr8_3:44839714-44839733 | Msa1290190:intron | 20.0% |
| !!! | AGAAAACCCATTTTAAAAAT+AGG | - | chr8_3:44839896-44839915 | Msa1290190:intron | 20.0% |
| !! | TTTATAACATCATGTTCAAT+GGG | + | chr8_3:44840486-44840505 | None:intergenic | 20.0% |
| !! | TTAGTTTATAAAAGAAGGAT+CGG | - | chr8_3:44838338-44838357 | Msa1290190:CDS | 20.0% |
| !! | TAGAAAAGTAAGAAAGTAAA+GGG | + | chr8_3:44838707-44838726 | None:intergenic | 20.0% |
| !! | ATAGAAAAGTAAGAAAGTAA+AGG | + | chr8_3:44838708-44838727 | None:intergenic | 20.0% |
| !!! | TTTTATACTGTTAAATTGGA+AGG | - | chr8_3:44838876-44838895 | Msa1290190:intron | 20.0% |
| !! | TTTATACTGTTAAATTGGAA+GGG | - | chr8_3:44838877-44838896 | Msa1290190:intron | 20.0% |
| !!! | TTCCTATGATTTTTAAATCA+CGG | + | chr8_3:44839508-44839527 | None:intergenic | 20.0% |
| !!! | ATTTTTTGAAGATATGAATC+TGG | + | chr8_3:44839667-44839686 | None:intergenic | 20.0% |
| !!! | ATGTATATTTGAGTTTAAGA+TGG | - | chr8_3:44839713-44839732 | Msa1290190:intron | 20.0% |
| !!! | TGTATATTTGAGTTTAAGAT+GGG | - | chr8_3:44839714-44839733 | Msa1290190:intron | 20.0% |
| !!! | AGAAAACCCATTTTAAAAAT+AGG | - | chr8_3:44839896-44839915 | Msa1290190:intron | 20.0% |
| !! | TTTATAACATCATGTTCAAT+GGG | + | chr8_3:44840486-44840505 | None:intergenic | 20.0% |
| ! | AAGAAAAGAAAATAAACGAG+AGG | - | chr8_3:44838432-44838451 | Msa1290190:CDS | 25.0% |
| ! | TTAACGAAATCATGAAACTA+CGG | - | chr8_3:44838518-44838537 | Msa1290190:CDS | 25.0% |
| ! | TGATATCAACAGATTTGAAT+GGG | - | chr8_3:44838635-44838654 | Msa1290190:CDS | 25.0% |
| !!! | ATTCCATGTTTTTTGTTTTG+AGG | - | chr8_3:44838785-44838804 | Msa1290190:intron | 25.0% |
| ! | AATAGAATAATGATGTTGAG+TGG | - | chr8_3:44839034-44839053 | Msa1290190:intron | 25.0% |
| !!! | TCAAACTTTGGTTTGTTATT+TGG | - | chr8_3:44839454-44839473 | Msa1290190:CDS | 25.0% |
| !!! | TTTGGTTTGTTATTTGGAAA+TGG | - | chr8_3:44839460-44839479 | Msa1290190:CDS | 25.0% |
| ! | AACCGTGATTTAAAAATCAT+AGG | - | chr8_3:44839503-44839522 | Msa1290190:intron | 25.0% |
| ! | TGTAGAACTTACTGAAAAAA+GGG | - | chr8_3:44840293-44840312 | Msa1290190:CDS | 25.0% |
| ! | CTTTATAACATCATGTTCAA+TGG | + | chr8_3:44840487-44840506 | None:intergenic | 25.0% |
| ! | CATTGAACATGATGTTATAA+AGG | - | chr8_3:44840485-44840504 | Msa1290190:five_prime_UTR | 25.0% |
| ! | AAGAAAAGAAAATAAACGAG+AGG | - | chr8_3:44838432-44838451 | Msa1290190:CDS | 25.0% |
| ! | TTAACGAAATCATGAAACTA+CGG | - | chr8_3:44838518-44838537 | Msa1290190:CDS | 25.0% |
| ! | TGATATCAACAGATTTGAAT+GGG | - | chr8_3:44838635-44838654 | Msa1290190:CDS | 25.0% |
| !!! | ATTCCATGTTTTTTGTTTTG+AGG | - | chr8_3:44838785-44838804 | Msa1290190:intron | 25.0% |
| ! | AATAGAATAATGATGTTGAG+TGG | - | chr8_3:44839034-44839053 | Msa1290190:intron | 25.0% |
| !!! | TCAAACTTTGGTTTGTTATT+TGG | - | chr8_3:44839454-44839473 | Msa1290190:CDS | 25.0% |
| !!! | TTTGGTTTGTTATTTGGAAA+TGG | - | chr8_3:44839460-44839479 | Msa1290190:CDS | 25.0% |
| ! | AACCGTGATTTAAAAATCAT+AGG | - | chr8_3:44839503-44839522 | Msa1290190:intron | 25.0% |
| ! | TGTAGAACTTACTGAAAAAA+GGG | - | chr8_3:44840293-44840312 | Msa1290190:CDS | 25.0% |
| ! | CTTTATAACATCATGTTCAA+TGG | + | chr8_3:44840487-44840506 | None:intergenic | 25.0% |
| ! | CATTGAACATGATGTTATAA+AGG | - | chr8_3:44840485-44840504 | Msa1290190:five_prime_UTR | 25.0% |
| AAGAGTTGAGACATTAACAT+TGG | - | chr8_3:44838374-44838393 | Msa1290190:CDS | 30.0% | |
| CTGATATCAACAGATTTGAA+TGG | - | chr8_3:44838634-44838653 | Msa1290190:CDS | 30.0% | |
| AGTAAGAAAGTAAAGGGTAA+TGG | + | chr8_3:44838701-44838720 | None:intergenic | 30.0% | |
| ACACCTCAAAACAAAAAACA+TGG | + | chr8_3:44838791-44838810 | None:intergenic | 30.0% | |
| !! | ATTTGTTTCTAAATTGACCG+GGG | + | chr8_3:44838922-44838941 | None:intergenic | 30.0% |
| !! | GATTTGTTTCTAAATTGACC+GGG | + | chr8_3:44838923-44838942 | None:intergenic | 30.0% |
| !! | GGATTTGTTTCTAAATTGAC+CGG | + | chr8_3:44838924-44838943 | None:intergenic | 30.0% |
| TAGTATAGTAGGTTAACAAC+AGG | + | chr8_3:44838945-44838964 | None:intergenic | 30.0% | |
| AACCTACTATACTATATAGC+TGG | - | chr8_3:44838951-44838970 | Msa1290190:intron | 30.0% | |
| TTTGTGCATATTTCACTTTG+AGG | - | chr8_3:44839010-44839029 | Msa1290190:intron | 30.0% | |
| AAACATATCTATGAATACGC+AGG | - | chr8_3:44839126-44839145 | Msa1290190:CDS | 30.0% | |
| GAGTATTAGTACTCAAACTT+TGG | - | chr8_3:44839442-44839461 | Msa1290190:CDS | 30.0% | |
| AAATCATAGGAAACGATTAG+AGG | - | chr8_3:44839516-44839535 | Msa1290190:intron | 30.0% | |
| AATCATAGGAAACGATTAGA+GGG | - | chr8_3:44839517-44839536 | Msa1290190:intron | 30.0% | |
| AAGCGATTTAAGAGAGAATT+GGG | - | chr8_3:44839548-44839567 | Msa1290190:intron | 30.0% | |
| CTCAAATATACATCTTTCTG+AGG | + | chr8_3:44839706-44839725 | None:intergenic | 30.0% | |
| AAAGTAGCACTAGACAAAAA+TGG | + | chr8_3:44840050-44840069 | None:intergenic | 30.0% | |
| AATAAGGATGAAACAGATGA+GGG | + | chr8_3:44840111-44840130 | None:intergenic | 30.0% | |
| GTGTAGAACTTACTGAAAAA+AGG | - | chr8_3:44840292-44840311 | Msa1290190:CDS | 30.0% | |
| TTAAACATGTTCATGGTAGT+GGG | + | chr8_3:44840393-44840412 | None:intergenic | 30.0% | |
| TACCATGAACATGTTTAAGA+AGG | - | chr8_3:44840395-44840414 | Msa1290190:intron | 30.0% | |
| ATCCTTCTTAAACATGTTCA+TGG | + | chr8_3:44840400-44840419 | None:intergenic | 30.0% | |
| ATGTCTCGTCTAATAATGAA+TGG | - | chr8_3:44840433-44840452 | Msa1290190:intron | 30.0% | |
| TGTCTCGTCTAATAATGAAT+GGG | - | chr8_3:44840434-44840453 | Msa1290190:intron | 30.0% | |
| ACATGATGTTATAAAGGATG+AGG | - | chr8_3:44840491-44840510 | Msa1290190:five_prime_UTR | 30.0% | |
| CATGATGTTATAAAGGATGA+GGG | - | chr8_3:44840492-44840511 | Msa1290190:five_prime_UTR | 30.0% | |
| AAGAGTTGAGACATTAACAT+TGG | - | chr8_3:44838374-44838393 | Msa1290190:CDS | 30.0% | |
| CTGATATCAACAGATTTGAA+TGG | - | chr8_3:44838634-44838653 | Msa1290190:CDS | 30.0% | |
| AGTAAGAAAGTAAAGGGTAA+TGG | + | chr8_3:44838701-44838720 | None:intergenic | 30.0% | |
| ACACCTCAAAACAAAAAACA+TGG | + | chr8_3:44838791-44838810 | None:intergenic | 30.0% | |
| !! | ATTTGTTTCTAAATTGACCG+GGG | + | chr8_3:44838922-44838941 | None:intergenic | 30.0% |
| !! | GATTTGTTTCTAAATTGACC+GGG | + | chr8_3:44838923-44838942 | None:intergenic | 30.0% |
| !! | GGATTTGTTTCTAAATTGAC+CGG | + | chr8_3:44838924-44838943 | None:intergenic | 30.0% |
| TAGTATAGTAGGTTAACAAC+AGG | + | chr8_3:44838945-44838964 | None:intergenic | 30.0% | |
| AACCTACTATACTATATAGC+TGG | - | chr8_3:44838951-44838970 | Msa1290190:intron | 30.0% | |
| TTTGTGCATATTTCACTTTG+AGG | - | chr8_3:44839010-44839029 | Msa1290190:intron | 30.0% | |
| AAACATATCTATGAATACGC+AGG | - | chr8_3:44839126-44839145 | Msa1290190:CDS | 30.0% | |
| GAGTATTAGTACTCAAACTT+TGG | - | chr8_3:44839442-44839461 | Msa1290190:CDS | 30.0% | |
| AAATCATAGGAAACGATTAG+AGG | - | chr8_3:44839516-44839535 | Msa1290190:intron | 30.0% | |
| AATCATAGGAAACGATTAGA+GGG | - | chr8_3:44839517-44839536 | Msa1290190:intron | 30.0% | |
| AAGCGATTTAAGAGAGAATT+GGG | - | chr8_3:44839548-44839567 | Msa1290190:intron | 30.0% | |
| CTCAAATATACATCTTTCTG+AGG | + | chr8_3:44839706-44839725 | None:intergenic | 30.0% | |
| AAAGTAGCACTAGACAAAAA+TGG | + | chr8_3:44840050-44840069 | None:intergenic | 30.0% | |
| AATAAGGATGAAACAGATGA+GGG | + | chr8_3:44840111-44840130 | None:intergenic | 30.0% | |
| GTGTAGAACTTACTGAAAAA+AGG | - | chr8_3:44840292-44840311 | Msa1290190:CDS | 30.0% | |
| TTAAACATGTTCATGGTAGT+GGG | + | chr8_3:44840393-44840412 | None:intergenic | 30.0% | |
| TACCATGAACATGTTTAAGA+AGG | - | chr8_3:44840395-44840414 | Msa1290190:intron | 30.0% | |
| ATCCTTCTTAAACATGTTCA+TGG | + | chr8_3:44840400-44840419 | None:intergenic | 30.0% | |
| ATGTCTCGTCTAATAATGAA+TGG | - | chr8_3:44840433-44840452 | Msa1290190:intron | 30.0% | |
| TGTCTCGTCTAATAATGAAT+GGG | - | chr8_3:44840434-44840453 | Msa1290190:intron | 30.0% | |
| ACATGATGTTATAAAGGATG+AGG | - | chr8_3:44840491-44840510 | Msa1290190:five_prime_UTR | 30.0% | |
| CATGATGTTATAAAGGATGA+GGG | - | chr8_3:44840492-44840511 | Msa1290190:five_prime_UTR | 30.0% | |
| GTTTATAAAAGAAGGATCGG+TGG | - | chr8_3:44838341-44838360 | Msa1290190:CDS | 35.0% | |
| AAAGAAAATAAACGAGAGGC+AGG | - | chr8_3:44838436-44838455 | Msa1290190:CDS | 35.0% | |
| CATCTTCAAGCTAAATACGT+TGG | - | chr8_3:44838600-44838619 | Msa1290190:CDS | 35.0% | |
| GATAGCTATGCTTCATACAT+TGG | - | chr8_3:44838675-44838694 | Msa1290190:CDS | 35.0% | |
| ATCGCTCAAAACGAATCTAT+TGG | - | chr8_3:44838726-44838745 | Msa1290190:intron | 35.0% | |
| ! | ACAGCGTTATACTTTTATGC+AGG | - | chr8_3:44838752-44838771 | Msa1290190:intron | 35.0% |
| TACTGTTAAATTGGAAGGGT+TGG | - | chr8_3:44838881-44838900 | Msa1290190:intron | 35.0% | |
| GACCAGCTATATAGTATAGT+AGG | + | chr8_3:44838956-44838975 | None:intergenic | 35.0% | |
| CTATATAGCTGGTCAATTAG+TGG | - | chr8_3:44838962-44838981 | Msa1290190:intron | 35.0% | |
| CCAAGTTACTTATCTCACTA+AGG | + | chr8_3:44839176-44839195 | None:intergenic | 35.0% | |
| CCTTAGTGAGATAAGTAACT+TGG | - | chr8_3:44839173-44839192 | Msa1290190:CDS | 35.0% | |
| GTGAGATAAGTAACTTGGTT+AGG | - | chr8_3:44839178-44839197 | Msa1290190:CDS | 35.0% | |
| CAAGCGATTTAAGAGAGAAT+TGG | - | chr8_3:44839547-44839566 | Msa1290190:intron | 35.0% | |
| AGCGATTTAAGAGAGAATTG+GGG | - | chr8_3:44839549-44839568 | Msa1290190:intron | 35.0% | |
| AGAACGATGAAGAACTTTCA+AGG | + | chr8_3:44839599-44839618 | None:intergenic | 35.0% | |
| GAATAAGGATGAAACAGATG+AGG | + | chr8_3:44840112-44840131 | None:intergenic | 35.0% | |
| CAATGAAAACAGAGAAGAAC+AGG | + | chr8_3:44840154-44840173 | None:intergenic | 35.0% | |
| TCTGAGAAGTAGAAGCAATT+TGG | + | chr8_3:44840181-44840200 | None:intergenic | 35.0% | |
| CTTACTGAAAAAAGGGAAAG+CGG | - | chr8_3:44840300-44840319 | Msa1290190:CDS | 35.0% | |
| CTTAAACATGTTCATGGTAG+TGG | + | chr8_3:44840394-44840413 | None:intergenic | 35.0% | |
| !! | GTCTAATAATGAATGGGTTG+TGG | - | chr8_3:44840440-44840459 | Msa1290190:intron | 35.0% |
| !! | TAATAATGAATGGGTTGTGG+CGG | - | chr8_3:44840443-44840462 | Msa1290190:exon | 35.0% |
| ACATCATGTTCAATGGGATT+AGG | + | chr8_3:44840480-44840499 | None:intergenic | 35.0% | |
| ! | TTCTAGAAGAGATGACGATT+AGG | - | chr8_3:44840532-44840551 | Msa1290190:five_prime_UTR | 35.0% |
| GTTTATAAAAGAAGGATCGG+TGG | - | chr8_3:44838341-44838360 | Msa1290190:CDS | 35.0% | |
| AAAGAAAATAAACGAGAGGC+AGG | - | chr8_3:44838436-44838455 | Msa1290190:CDS | 35.0% | |
| CATCTTCAAGCTAAATACGT+TGG | - | chr8_3:44838600-44838619 | Msa1290190:CDS | 35.0% | |
| GATAGCTATGCTTCATACAT+TGG | - | chr8_3:44838675-44838694 | Msa1290190:CDS | 35.0% | |
| ATCGCTCAAAACGAATCTAT+TGG | - | chr8_3:44838726-44838745 | Msa1290190:intron | 35.0% | |
| ! | ACAGCGTTATACTTTTATGC+AGG | - | chr8_3:44838752-44838771 | Msa1290190:intron | 35.0% |
| TACTGTTAAATTGGAAGGGT+TGG | - | chr8_3:44838881-44838900 | Msa1290190:intron | 35.0% | |
| GACCAGCTATATAGTATAGT+AGG | + | chr8_3:44838956-44838975 | None:intergenic | 35.0% | |
| CTATATAGCTGGTCAATTAG+TGG | - | chr8_3:44838962-44838981 | Msa1290190:intron | 35.0% | |
| CCAAGTTACTTATCTCACTA+AGG | + | chr8_3:44839176-44839195 | None:intergenic | 35.0% | |
| CCTTAGTGAGATAAGTAACT+TGG | - | chr8_3:44839173-44839192 | Msa1290190:CDS | 35.0% | |
| GTGAGATAAGTAACTTGGTT+AGG | - | chr8_3:44839178-44839197 | Msa1290190:CDS | 35.0% | |
| CAAGCGATTTAAGAGAGAAT+TGG | - | chr8_3:44839547-44839566 | Msa1290190:intron | 35.0% | |
| AGCGATTTAAGAGAGAATTG+GGG | - | chr8_3:44839549-44839568 | Msa1290190:intron | 35.0% | |
| AGAACGATGAAGAACTTTCA+AGG | + | chr8_3:44839599-44839618 | None:intergenic | 35.0% | |
| GAATAAGGATGAAACAGATG+AGG | + | chr8_3:44840112-44840131 | None:intergenic | 35.0% | |
| CAATGAAAACAGAGAAGAAC+AGG | + | chr8_3:44840154-44840173 | None:intergenic | 35.0% | |
| TCTGAGAAGTAGAAGCAATT+TGG | + | chr8_3:44840181-44840200 | None:intergenic | 35.0% | |
| CTTACTGAAAAAAGGGAAAG+CGG | - | chr8_3:44840300-44840319 | Msa1290190:CDS | 35.0% | |
| CTTAAACATGTTCATGGTAG+TGG | + | chr8_3:44840394-44840413 | None:intergenic | 35.0% | |
| !! | GTCTAATAATGAATGGGTTG+TGG | - | chr8_3:44840440-44840459 | Msa1290190:intron | 35.0% |
| !! | TAATAATGAATGGGTTGTGG+CGG | - | chr8_3:44840443-44840462 | Msa1290190:exon | 35.0% |
| ACATCATGTTCAATGGGATT+AGG | + | chr8_3:44840480-44840499 | None:intergenic | 35.0% | |
| ! | TTCTAGAAGAGATGACGATT+AGG | - | chr8_3:44840532-44840551 | Msa1290190:five_prime_UTR | 35.0% |
| AGCTTGAAGATGCTCAAGTT+GGG | + | chr8_3:44838592-44838611 | None:intergenic | 40.0% | |
| TAGCTTGAAGATGCTCAAGT+TGG | + | chr8_3:44838593-44838612 | None:intergenic | 40.0% | |
| CAAGCTAAATACGTTGGAAC+TGG | - | chr8_3:44838606-44838625 | Msa1290190:CDS | 40.0% | |
| GTGGATAGTATTCTCTCTCA+TGG | - | chr8_3:44839053-44839072 | Msa1290190:CDS | 40.0% | |
| ATAGATTCCCACACATGTTG+TGG | - | chr8_3:44839247-44839266 | Msa1290190:intron | 40.0% | |
| TGTTGTCAGTAGTACTGCTA+TGG | - | chr8_3:44839310-44839329 | Msa1290190:intron | 40.0% | |
| ACAAGAAAATGCACTGCAAC+AGG | + | chr8_3:44839388-44839407 | None:intergenic | 40.0% | |
| !! | TGCAATTTGTTGCCGCAAAT+AGG | - | chr8_3:44839410-44839429 | Msa1290190:intron | 40.0% |
| ! | AAGAGAGAATTGGGGCTTTT+AGG | - | chr8_3:44839557-44839576 | Msa1290190:intron | 40.0% |
| !!! | AGAATTGGGGCTTTTAGGTT+AGG | - | chr8_3:44839562-44839581 | Msa1290190:intron | 40.0% |
| GGGATATGACTCGATTACAA+AGG | + | chr8_3:44839624-44839643 | None:intergenic | 40.0% | |
| ! | TGAGTTTAAGATGGGAACAG+TGG | - | chr8_3:44839722-44839741 | Msa1290190:intron | 40.0% |
| ! | GAGTTTAAGATGGGAACAGT+GGG | - | chr8_3:44839723-44839742 | Msa1290190:intron | 40.0% |
| AAGATGGGAATCTCTTTCTG+AGG | + | chr8_3:44839763-44839782 | None:intergenic | 40.0% | |
| AGAAGACATGTTTCTCCATG+TGG | - | chr8_3:44839866-44839885 | Msa1290190:intron | 40.0% | |
| GAAGACATGTTTCTCCATGT+GGG | - | chr8_3:44839867-44839886 | Msa1290190:intron | 40.0% | |
| ! | GGTTTTCTTTATGACCCACA+TGG | + | chr8_3:44839884-44839903 | None:intergenic | 40.0% |
| ATGGACAAGAAAGGATGGAA+AGG | + | chr8_3:44840074-44840093 | None:intergenic | 40.0% | |
| TGAAACAGATGAGGGAAAAC+TGG | + | chr8_3:44840103-44840122 | None:intergenic | 40.0% | |
| TTCTCAGATTGCTACTAGTG+AGG | - | chr8_3:44840193-44840212 | Msa1290190:CDS | 40.0% | |
| TCTCAGATTGCTACTAGTGA+GGG | - | chr8_3:44840194-44840213 | Msa1290190:CDS | 40.0% | |
| !! | TTGTTTCTATAGCGAAGGAC+AGG | + | chr8_3:44840239-44840258 | None:intergenic | 40.0% |
| !! | AGGCTTTGTTTCTATAGCGA+AGG | + | chr8_3:44840244-44840263 | None:intergenic | 40.0% |
| !! | CTATTTCCAGGAGCATTCTT+AGG | + | chr8_3:44840264-44840283 | None:intergenic | 40.0% |
| CTAAGAATGCTCCTGGAAAT+AGG | - | chr8_3:44840262-44840281 | Msa1290190:CDS | 40.0% | |
| ACACAATCACTCCTATTTCC+AGG | + | chr8_3:44840276-44840295 | None:intergenic | 40.0% | |
| GATGTTATAAAGGATGAGGG+TGG | - | chr8_3:44840495-44840514 | Msa1290190:five_prime_UTR | 40.0% | |
| ! | ATCGTCATCTCTTCTAGAAG+TGG | + | chr8_3:44840531-44840550 | None:intergenic | 40.0% |
| AGCTTGAAGATGCTCAAGTT+GGG | + | chr8_3:44838592-44838611 | None:intergenic | 40.0% | |
| TAGCTTGAAGATGCTCAAGT+TGG | + | chr8_3:44838593-44838612 | None:intergenic | 40.0% | |
| CAAGCTAAATACGTTGGAAC+TGG | - | chr8_3:44838606-44838625 | Msa1290190:CDS | 40.0% | |
| GTGGATAGTATTCTCTCTCA+TGG | - | chr8_3:44839053-44839072 | Msa1290190:CDS | 40.0% | |
| ATAGATTCCCACACATGTTG+TGG | - | chr8_3:44839247-44839266 | Msa1290190:intron | 40.0% | |
| TGTTGTCAGTAGTACTGCTA+TGG | - | chr8_3:44839310-44839329 | Msa1290190:intron | 40.0% | |
| ACAAGAAAATGCACTGCAAC+AGG | + | chr8_3:44839388-44839407 | None:intergenic | 40.0% | |
| !! | TGCAATTTGTTGCCGCAAAT+AGG | - | chr8_3:44839410-44839429 | Msa1290190:intron | 40.0% |
| ! | AAGAGAGAATTGGGGCTTTT+AGG | - | chr8_3:44839557-44839576 | Msa1290190:intron | 40.0% |
| !!! | AGAATTGGGGCTTTTAGGTT+AGG | - | chr8_3:44839562-44839581 | Msa1290190:intron | 40.0% |
| GGGATATGACTCGATTACAA+AGG | + | chr8_3:44839624-44839643 | None:intergenic | 40.0% | |
| ! | TGAGTTTAAGATGGGAACAG+TGG | - | chr8_3:44839722-44839741 | Msa1290190:intron | 40.0% |
| ! | GAGTTTAAGATGGGAACAGT+GGG | - | chr8_3:44839723-44839742 | Msa1290190:intron | 40.0% |
| AAGATGGGAATCTCTTTCTG+AGG | + | chr8_3:44839763-44839782 | None:intergenic | 40.0% | |
| AGAAGACATGTTTCTCCATG+TGG | - | chr8_3:44839866-44839885 | Msa1290190:intron | 40.0% | |
| GAAGACATGTTTCTCCATGT+GGG | - | chr8_3:44839867-44839886 | Msa1290190:intron | 40.0% | |
| ! | GGTTTTCTTTATGACCCACA+TGG | + | chr8_3:44839884-44839903 | None:intergenic | 40.0% |
| ATGGACAAGAAAGGATGGAA+AGG | + | chr8_3:44840074-44840093 | None:intergenic | 40.0% | |
| TGAAACAGATGAGGGAAAAC+TGG | + | chr8_3:44840103-44840122 | None:intergenic | 40.0% | |
| TTCTCAGATTGCTACTAGTG+AGG | - | chr8_3:44840193-44840212 | Msa1290190:CDS | 40.0% | |
| TCTCAGATTGCTACTAGTGA+GGG | - | chr8_3:44840194-44840213 | Msa1290190:CDS | 40.0% | |
| !! | TTGTTTCTATAGCGAAGGAC+AGG | + | chr8_3:44840239-44840258 | None:intergenic | 40.0% |
| !! | AGGCTTTGTTTCTATAGCGA+AGG | + | chr8_3:44840244-44840263 | None:intergenic | 40.0% |
| !! | CTATTTCCAGGAGCATTCTT+AGG | + | chr8_3:44840264-44840283 | None:intergenic | 40.0% |
| CTAAGAATGCTCCTGGAAAT+AGG | - | chr8_3:44840262-44840281 | Msa1290190:CDS | 40.0% | |
| ACACAATCACTCCTATTTCC+AGG | + | chr8_3:44840276-44840295 | None:intergenic | 40.0% | |
| GATGTTATAAAGGATGAGGG+TGG | - | chr8_3:44840495-44840514 | Msa1290190:five_prime_UTR | 40.0% | |
| ! | ATCGTCATCTCTTCTAGAAG+TGG | + | chr8_3:44840531-44840550 | None:intergenic | 40.0% |
| ATTCCCACACATGTTGTGGT+AGG | - | chr8_3:44839251-44839270 | Msa1290190:intron | 45.0% | |
| CAACCTACCACAACATGTGT+GGG | + | chr8_3:44839257-44839276 | None:intergenic | 45.0% | |
| TCAACCTACCACAACATGTG+TGG | + | chr8_3:44839258-44839277 | None:intergenic | 45.0% | |
| AGCAGTACTACTGACAACAC+AGG | + | chr8_3:44839309-44839328 | None:intergenic | 45.0% | |
| CTCTCCTTGTCACCTATTTG+CGG | + | chr8_3:44839425-44839444 | None:intergenic | 45.0% | |
| AATGGTACGCTTAGCTAGAG+AGG | - | chr8_3:44839478-44839497 | Msa1290190:CDS | 45.0% | |
| GCGTGCAGAAATCAGAAGAT+GGG | + | chr8_3:44839778-44839797 | None:intergenic | 45.0% | |
| CATCTTCTGATTTCTGCACG+CGG | - | chr8_3:44839777-44839796 | Msa1290190:intron | 45.0% | |
| ATCTTCTGATTTCTGCACGC+GGG | - | chr8_3:44839778-44839797 | Msa1290190:intron | 45.0% | |
| ! | AATACCCATTTTCTGCTCGC+AGG | - | chr8_3:44839808-44839827 | Msa1290190:intron | 45.0% |
| TCTAACCTGCGAGCAGAAAA+CGG | + | chr8_3:44839846-44839865 | None:intergenic | 45.0% | |
| AGACAAAAATGGTCGCAGCA+GGG | + | chr8_3:44840039-44840058 | None:intergenic | 45.0% | |
| TAGACAAAAATGGTCGCAGC+AGG | + | chr8_3:44840040-44840059 | None:intergenic | 45.0% | |
| CAGAGATGGACAAGAAAGGA+TGG | + | chr8_3:44840079-44840098 | None:intergenic | 45.0% | |
| TGGACAGAGATGGACAAGAA+AGG | + | chr8_3:44840083-44840102 | None:intergenic | 45.0% | |
| ATTCGTCGTGAGGGAGAATA+AGG | + | chr8_3:44840127-44840146 | None:intergenic | 45.0% | |
| ACAAAGCCTAAGAATGCTCC+TGG | - | chr8_3:44840255-44840274 | Msa1290190:CDS | 45.0% | |
| AAAAAGGGAAAGCGGTGAAG+TGG | - | chr8_3:44840308-44840327 | Msa1290190:CDS | 45.0% | |
| AGATGACGATTAGGCGTTCT+TGG | - | chr8_3:44840541-44840560 | Msa1290190:five_prime_UTR | 45.0% | |
| ATTCCCACACATGTTGTGGT+AGG | - | chr8_3:44839251-44839270 | Msa1290190:intron | 45.0% | |
| CAACCTACCACAACATGTGT+GGG | + | chr8_3:44839257-44839276 | None:intergenic | 45.0% | |
| TCAACCTACCACAACATGTG+TGG | + | chr8_3:44839258-44839277 | None:intergenic | 45.0% | |
| AGCAGTACTACTGACAACAC+AGG | + | chr8_3:44839309-44839328 | None:intergenic | 45.0% | |
| CTCTCCTTGTCACCTATTTG+CGG | + | chr8_3:44839425-44839444 | None:intergenic | 45.0% | |
| AATGGTACGCTTAGCTAGAG+AGG | - | chr8_3:44839478-44839497 | Msa1290190:CDS | 45.0% | |
| GCGTGCAGAAATCAGAAGAT+GGG | + | chr8_3:44839778-44839797 | None:intergenic | 45.0% | |
| CATCTTCTGATTTCTGCACG+CGG | - | chr8_3:44839777-44839796 | Msa1290190:intron | 45.0% | |
| ATCTTCTGATTTCTGCACGC+GGG | - | chr8_3:44839778-44839797 | Msa1290190:intron | 45.0% | |
| ! | AATACCCATTTTCTGCTCGC+AGG | - | chr8_3:44839808-44839827 | Msa1290190:intron | 45.0% |
| TCTAACCTGCGAGCAGAAAA+CGG | + | chr8_3:44839846-44839865 | None:intergenic | 45.0% | |
| AGACAAAAATGGTCGCAGCA+GGG | + | chr8_3:44840039-44840058 | None:intergenic | 45.0% | |
| TAGACAAAAATGGTCGCAGC+AGG | + | chr8_3:44840040-44840059 | None:intergenic | 45.0% | |
| CAGAGATGGACAAGAAAGGA+TGG | + | chr8_3:44840079-44840098 | None:intergenic | 45.0% | |
| TGGACAGAGATGGACAAGAA+AGG | + | chr8_3:44840083-44840102 | None:intergenic | 45.0% | |
| ATTCGTCGTGAGGGAGAATA+AGG | + | chr8_3:44840127-44840146 | None:intergenic | 45.0% | |
| ACAAAGCCTAAGAATGCTCC+TGG | - | chr8_3:44840255-44840274 | Msa1290190:CDS | 45.0% | |
| AAAAAGGGAAAGCGGTGAAG+TGG | - | chr8_3:44840308-44840327 | Msa1290190:CDS | 45.0% | |
| AGATGACGATTAGGCGTTCT+TGG | - | chr8_3:44840541-44840560 | Msa1290190:five_prime_UTR | 45.0% | |
| !!! | TATTTTATTAGAAATAAATA+GGG | + | chr8_3:44839644-44839663 | None:intergenic | 5.0% |
| !!! | ATTTAATTATTTTAAAAACA+GGG | - | chr8_3:44839957-44839976 | Msa1290190:intron | 5.0% |
| !! | ACAAAATTATTAATAATTAA+AGG | + | chr8_3:44839986-44840005 | None:intergenic | 5.0% |
| !!! | TATTTTATTAGAAATAAATA+GGG | + | chr8_3:44839644-44839663 | None:intergenic | 5.0% |
| !!! | ATTTAATTATTTTAAAAACA+GGG | - | chr8_3:44839957-44839976 | Msa1290190:intron | 5.0% |
| !! | ACAAAATTATTAATAATTAA+AGG | + | chr8_3:44839986-44840005 | None:intergenic | 5.0% |
| AGCAAAGACGCGAGTAGAGT+AGG | - | chr8_3:44838397-44838416 | Msa1290190:CDS | 50.0% | |
| GCAAAGACGCGAGTAGAGTA+GGG | - | chr8_3:44838398-44838417 | Msa1290190:CDS | 50.0% | |
| GCGAGTAGAGTAGGGTTTGA+GGG | - | chr8_3:44838406-44838425 | Msa1290190:CDS | 50.0% | |
| GTCAGTAGTACTGCTATGGC+AGG | - | chr8_3:44839314-44839333 | Msa1290190:intron | 50.0% | |
| GGCAGGCAATAGCGAAATAG+CGG | - | chr8_3:44839331-44839350 | Msa1290190:intron | 50.0% | |
| GTTGCCGCAAATAGGTGACA+AGG | - | chr8_3:44839418-44839437 | Msa1290190:intron | 50.0% | |
| AAGATGGGAACAGTGGGTCA+TGG | - | chr8_3:44839729-44839748 | Msa1290190:intron | 50.0% | |
| CGCGTGCAGAAATCAGAAGA+TGG | + | chr8_3:44839779-44839798 | None:intergenic | 50.0% | |
| CTGACCTGCGAGCAGAAAAT+GGG | + | chr8_3:44839815-44839834 | None:intergenic | 50.0% | |
| TCTGACCTGCGAGCAGAAAA+TGG | + | chr8_3:44839816-44839835 | None:intergenic | 50.0% | |
| ! | AATACCCGTTTTCTGCTCGC+AGG | - | chr8_3:44839838-44839857 | Msa1290190:intron | 50.0% |
| CTAACCTGCGAGCAGAAAAC+GGG | + | chr8_3:44839845-44839864 | None:intergenic | 50.0% | |
| GACAAAAATGGTCGCAGCAG+GGG | + | chr8_3:44840038-44840057 | None:intergenic | 50.0% | |
| GAGGGAAAACTGGACAGAGA+TGG | + | chr8_3:44840093-44840112 | None:intergenic | 50.0% | |
| ACAGGACGAATTCGTCGTGA+GGG | + | chr8_3:44840136-44840155 | None:intergenic | 50.0% | |
| AACAGGACGAATTCGTCGTG+AGG | + | chr8_3:44840137-44840156 | None:intergenic | 50.0% | |
| AGCAAAGACGCGAGTAGAGT+AGG | - | chr8_3:44838397-44838416 | Msa1290190:CDS | 50.0% | |
| GCAAAGACGCGAGTAGAGTA+GGG | - | chr8_3:44838398-44838417 | Msa1290190:CDS | 50.0% | |
| GCGAGTAGAGTAGGGTTTGA+GGG | - | chr8_3:44838406-44838425 | Msa1290190:CDS | 50.0% | |
| GTCAGTAGTACTGCTATGGC+AGG | - | chr8_3:44839314-44839333 | Msa1290190:intron | 50.0% | |
| GGCAGGCAATAGCGAAATAG+CGG | - | chr8_3:44839331-44839350 | Msa1290190:intron | 50.0% | |
| GTTGCCGCAAATAGGTGACA+AGG | - | chr8_3:44839418-44839437 | Msa1290190:intron | 50.0% | |
| AAGATGGGAACAGTGGGTCA+TGG | - | chr8_3:44839729-44839748 | Msa1290190:intron | 50.0% | |
| CGCGTGCAGAAATCAGAAGA+TGG | + | chr8_3:44839779-44839798 | None:intergenic | 50.0% | |
| CTGACCTGCGAGCAGAAAAT+GGG | + | chr8_3:44839815-44839834 | None:intergenic | 50.0% | |
| TCTGACCTGCGAGCAGAAAA+TGG | + | chr8_3:44839816-44839835 | None:intergenic | 50.0% | |
| ! | AATACCCGTTTTCTGCTCGC+AGG | - | chr8_3:44839838-44839857 | Msa1290190:intron | 50.0% |
| CTAACCTGCGAGCAGAAAAC+GGG | + | chr8_3:44839845-44839864 | None:intergenic | 50.0% | |
| GACAAAAATGGTCGCAGCAG+GGG | + | chr8_3:44840038-44840057 | None:intergenic | 50.0% | |
| GAGGGAAAACTGGACAGAGA+TGG | + | chr8_3:44840093-44840112 | None:intergenic | 50.0% | |
| ACAGGACGAATTCGTCGTGA+GGG | + | chr8_3:44840136-44840155 | None:intergenic | 50.0% | |
| AACAGGACGAATTCGTCGTG+AGG | + | chr8_3:44840137-44840156 | None:intergenic | 50.0% | |
| CGCGAGTAGAGTAGGGTTTG+AGG | - | chr8_3:44838405-44838424 | Msa1290190:CDS | 55.0% | |
| ACGAGAGGCAGGCAATATGC+AGG | - | chr8_3:44838447-44838466 | Msa1290190:CDS | 55.0% | |
| TTGCGTTGCAGGCGAGTGAT+AGG | - | chr8_3:44838553-44838572 | Msa1290190:CDS | 55.0% | |
| GCAATAGCGAAATAGCGGCG+AGG | - | chr8_3:44839336-44839355 | Msa1290190:intron | 55.0% | |
| CGAAATAGCGGCGAGGACTA+GGG | - | chr8_3:44839343-44839362 | Msa1290190:intron | 55.0% | |
| GAAATAGCGGCGAGGACTAG+GGG | - | chr8_3:44839344-44839363 | Msa1290190:intron | 55.0% | |
| GTCGCAGCAGGGGATAAAGA+GGG | + | chr8_3:44840028-44840047 | None:intergenic | 55.0% | |
| AAGGGAAAGCGGTGAAGTGG+AGG | - | chr8_3:44840311-44840330 | Msa1290190:CDS | 55.0% | |
| AGGGAAAGCGGTGAAGTGGA+GGG | - | chr8_3:44840312-44840331 | Msa1290190:CDS | 55.0% | |
| CGCGAGTAGAGTAGGGTTTG+AGG | - | chr8_3:44838405-44838424 | Msa1290190:CDS | 55.0% | |
| ACGAGAGGCAGGCAATATGC+AGG | - | chr8_3:44838447-44838466 | Msa1290190:CDS | 55.0% | |
| TTGCGTTGCAGGCGAGTGAT+AGG | - | chr8_3:44838553-44838572 | Msa1290190:CDS | 55.0% | |
| GCAATAGCGAAATAGCGGCG+AGG | - | chr8_3:44839336-44839355 | Msa1290190:intron | 55.0% | |
| CGAAATAGCGGCGAGGACTA+GGG | - | chr8_3:44839343-44839362 | Msa1290190:intron | 55.0% | |
| GAAATAGCGGCGAGGACTAG+GGG | - | chr8_3:44839344-44839363 | Msa1290190:intron | 55.0% | |
| GTCGCAGCAGGGGATAAAGA+GGG | + | chr8_3:44840028-44840047 | None:intergenic | 55.0% | |
| AAGGGAAAGCGGTGAAGTGG+AGG | - | chr8_3:44840311-44840330 | Msa1290190:CDS | 55.0% | |
| AGGGAAAGCGGTGAAGTGGA+GGG | - | chr8_3:44840312-44840331 | Msa1290190:CDS | 55.0% | |
| GTTGCGTTGCGTTGCGTTGC+AGG | - | chr8_3:44838542-44838561 | Msa1290190:CDS | 60.0% | |
| GGACCATCAGTGTGCAACCC+CGG | - | chr8_3:44838902-44838921 | Msa1290190:intron | 60.0% | |
| TGACCGGGGTTGCACACTGA+TGG | + | chr8_3:44838908-44838927 | None:intergenic | 60.0% | |
| GCGAAATAGCGGCGAGGACT+AGG | - | chr8_3:44839342-44839361 | Msa1290190:intron | 60.0% | |
| GGTCGCAGCAGGGGATAAAG+AGG | + | chr8_3:44840029-44840048 | None:intergenic | 60.0% | |
| GTTGCGTTGCGTTGCGTTGC+AGG | - | chr8_3:44838542-44838561 | Msa1290190:CDS | 60.0% | |
| GGACCATCAGTGTGCAACCC+CGG | - | chr8_3:44838902-44838921 | Msa1290190:intron | 60.0% | |
| TGACCGGGGTTGCACACTGA+TGG | + | chr8_3:44838908-44838927 | None:intergenic | 60.0% | |
| GCGAAATAGCGGCGAGGACT+AGG | - | chr8_3:44839342-44839361 | Msa1290190:intron | 60.0% | |
| GGTCGCAGCAGGGGATAAAG+AGG | + | chr8_3:44840029-44840048 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 44838336 | 44840575 | 44838336 | ID=Msa1290190;Name=Msa1290190 |
| chr8_3 | mRNA | 44838336 | 44840575 | 44838336 | ID=Msa1290190-mRNA-1;Parent=Msa1290190;Name=Msa1290190-mRNA-1;_AED=0.61;_eAED=0.61;_QI=127|0.25|0.4|0.4|1|1|5|0|275 |
| chr8_3 | exon | 44838336 | 44838711 | 44838336 | ID=Msa1290190-mRNA-1:exon:12363;Parent=Msa1290190-mRNA-1 |
| chr8_3 | exon | 44839052 | 44839215 | 44839052 | ID=Msa1290190-mRNA-1:exon:12362;Parent=Msa1290190-mRNA-1 |
| chr8_3 | exon | 44839430 | 44839501 | 44839430 | ID=Msa1290190-mRNA-1:exon:12361;Parent=Msa1290190-mRNA-1 |
| chr8_3 | exon | 44840138 | 44840347 | 44840138 | ID=Msa1290190-mRNA-1:exon:12360;Parent=Msa1290190-mRNA-1 |
| chr8_3 | exon | 44840443 | 44840575 | 44840443 | ID=Msa1290190-mRNA-1:exon:12359;Parent=Msa1290190-mRNA-1 |
| chr8_3 | five_prime_UTR | 44840449 | 44840575 | 44840449 | ID=Msa1290190-mRNA-1:five_prime_utr;Parent=Msa1290190-mRNA-1 |
| chr8_3 | CDS | 44840443 | 44840448 | 44840443 | ID=Msa1290190-mRNA-1:cds;Parent=Msa1290190-mRNA-1 |
| chr8_3 | CDS | 44840138 | 44840347 | 44840138 | ID=Msa1290190-mRNA-1:cds;Parent=Msa1290190-mRNA-1 |
| chr8_3 | CDS | 44839430 | 44839501 | 44839430 | ID=Msa1290190-mRNA-1:cds;Parent=Msa1290190-mRNA-1 |
| chr8_3 | CDS | 44839052 | 44839215 | 44839052 | ID=Msa1290190-mRNA-1:cds;Parent=Msa1290190-mRNA-1 |
| chr8_3 | CDS | 44838336 | 44838711 | 44838336 | ID=Msa1290190-mRNA-1:cds;Parent=Msa1290190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
