Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74342.t1 | XP_013445246.1 | 88.5 | 156 | 6 | 1 | 1 | 144 | 1 | 156 | 1.40E-73 | 285.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74342.t1 | Q9SSK5 | 34.0 | 153 | 85 | 5 | 3 | 140 | 7 | 158 | 4.5e-15 | 82.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74342.t1 | I3SJ62 | 88.5 | 156 | 6 | 1 | 1 | 144 | 1 | 156 | 1.0e-73 | 285.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050082 | MS.gene74342 | 0.823206 | 1.57E-53 | -1.69E-46 |
MS.gene050864 | MS.gene74342 | 0.804037 | 2.62E-49 | -1.69E-46 |
MS.gene051718 | MS.gene74342 | 0.817083 | 3.96E-52 | -1.69E-46 |
MS.gene055251 | MS.gene74342 | 0.802852 | 4.61E-49 | -1.69E-46 |
MS.gene056998 | MS.gene74342 | 0.805547 | 1.27E-49 | -1.69E-46 |
MS.gene058015 | MS.gene74342 | 0.816814 | 4.56E-52 | -1.69E-46 |
MS.gene058382 | MS.gene74342 | 0.810246 | 1.27E-50 | -1.69E-46 |
MS.gene060076 | MS.gene74342 | 0.828758 | 7.52E-55 | -1.69E-46 |
MS.gene06042 | MS.gene74342 | 0.805083 | 1.58E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74342.t1 | MTR_8g045695 | 88.462 | 156 | 6 | 1 | 1 | 144 | 1 | 156 | 4.82e-98 | 278 |
MS.gene74342.t1 | MTR_8g045735 | 81.818 | 154 | 16 | 1 | 1 | 142 | 1 | 154 | 5.38e-90 | 258 |
MS.gene74342.t1 | MTR_8g045665 | 80.128 | 156 | 19 | 1 | 1 | 144 | 1 | 156 | 1.43e-87 | 252 |
MS.gene74342.t1 | MTR_8g045640 | 76.282 | 156 | 25 | 1 | 1 | 144 | 1 | 156 | 8.75e-84 | 243 |
MS.gene74342.t1 | MTR_8g045560 | 75.641 | 156 | 26 | 1 | 1 | 144 | 1 | 156 | 1.55e-82 | 239 |
MS.gene74342.t1 | MTR_8g045520 | 73.248 | 157 | 29 | 2 | 1 | 144 | 1 | 157 | 6.51e-79 | 230 |
MS.gene74342.t1 | MTR_8g045490 | 69.427 | 157 | 34 | 3 | 1 | 144 | 1 | 156 | 9.74e-75 | 219 |
MS.gene74342.t1 | MTR_8g045400 | 68.590 | 156 | 37 | 2 | 1 | 144 | 1 | 156 | 2.44e-74 | 219 |
MS.gene74342.t1 | MTR_8g045570 | 66.447 | 152 | 38 | 2 | 1 | 139 | 1 | 152 | 3.94e-70 | 208 |
MS.gene74342.t1 | MTR_8g045300 | 62.821 | 156 | 45 | 2 | 1 | 143 | 1 | 156 | 4.48e-69 | 205 |
MS.gene74342.t1 | MTR_8g045555 | 64.474 | 152 | 41 | 2 | 1 | 139 | 1 | 152 | 3.44e-68 | 203 |
MS.gene74342.t1 | MTR_1g030810 | 42.484 | 153 | 72 | 4 | 1 | 138 | 1 | 152 | 5.64e-35 | 119 |
MS.gene74342.t1 | MTR_1g030820 | 37.908 | 153 | 79 | 4 | 1 | 138 | 1 | 152 | 4.33e-33 | 114 |
MS.gene74342.t1 | MTR_1g030840 | 37.179 | 156 | 77 | 6 | 1 | 136 | 1 | 155 | 3.71e-25 | 94.4 |
MS.gene74342.t1 | MTR_8g012550 | 32.667 | 150 | 85 | 5 | 6 | 141 | 8 | 155 | 9.10e-22 | 85.5 |
MS.gene74342.t1 | MTR_1g031640 | 36.054 | 147 | 74 | 6 | 7 | 139 | 7 | 147 | 4.14e-18 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene74342.t1 | AT5G28010 | 34.641 | 153 | 84 | 5 | 3 | 140 | 15 | 166 | 1.39e-20 | 82.8 |
MS.gene74342.t1 | AT5G28010 | 34.641 | 153 | 84 | 5 | 3 | 140 | 15 | 166 | 1.39e-20 | 82.8 |
MS.gene74342.t1 | AT1G70890 | 35.294 | 153 | 83 | 6 | 3 | 140 | 7 | 158 | 3.64e-19 | 79.0 |
MS.gene74342.t1 | AT1G70840 | 33.333 | 153 | 86 | 6 | 3 | 140 | 20 | 171 | 3.83e-18 | 76.6 |
MS.gene74342.t1 | AT1G70830 | 34.641 | 153 | 84 | 6 | 3 | 140 | 22 | 173 | 4.64e-18 | 76.3 |
MS.gene74342.t1 | AT1G70830 | 34.416 | 154 | 85 | 6 | 3 | 141 | 22 | 174 | 5.61e-18 | 76.6 |
MS.gene74342.t1 | AT1G70830 | 34.641 | 153 | 84 | 6 | 3 | 140 | 137 | 288 | 8.89e-18 | 77.8 |
MS.gene74342.t1 | AT4G23670 | 30.921 | 152 | 91 | 4 | 1 | 139 | 1 | 151 | 1.12e-17 | 74.7 |
MS.gene74342.t1 | AT1G70830 | 34.641 | 153 | 84 | 6 | 3 | 140 | 184 | 335 | 2.43e-17 | 77.0 |
MS.gene74342.t1 | AT1G70830 | 34.416 | 154 | 85 | 6 | 3 | 141 | 22 | 174 | 4.01e-17 | 76.6 |
MS.gene74342.t1 | AT1G70830 | 34.416 | 154 | 85 | 6 | 3 | 141 | 22 | 174 | 2.58e-17 | 75.9 |
MS.gene74342.t1 | AT5G28000 | 32.026 | 153 | 88 | 6 | 3 | 140 | 13 | 164 | 4.83e-17 | 73.6 |
MS.gene74342.t1 | AT1G14930 | 27.564 | 156 | 99 | 4 | 1 | 143 | 1 | 155 | 4.67e-16 | 70.9 |
MS.gene74342.t1 | AT2G01520 | 27.632 | 152 | 96 | 4 | 1 | 139 | 1 | 151 | 1.28e-15 | 69.7 |
MS.gene74342.t1 | AT1G70850 | 32.667 | 150 | 85 | 6 | 3 | 137 | 9 | 157 | 2.63e-15 | 70.5 |
MS.gene74342.t1 | AT1G70850 | 32.667 | 150 | 85 | 6 | 3 | 137 | 9 | 157 | 4.34e-15 | 70.9 |
MS.gene74342.t1 | AT1G70850 | 33.566 | 143 | 79 | 6 | 13 | 140 | 175 | 316 | 1.52e-14 | 69.3 |
MS.gene74342.t1 | AT1G70850 | 32.667 | 150 | 85 | 6 | 3 | 137 | 9 | 157 | 4.34e-15 | 70.9 |
MS.gene74342.t1 | AT1G70850 | 33.566 | 143 | 79 | 6 | 13 | 140 | 175 | 316 | 1.52e-14 | 69.3 |
MS.gene74342.t1 | AT2G01530 | 28.947 | 152 | 94 | 4 | 1 | 139 | 1 | 151 | 1.16e-14 | 67.0 |
MS.gene74342.t1 | AT1G70870 | 41.026 | 78 | 45 | 1 | 62 | 138 | 61 | 138 | 1.34e-14 | 66.6 |
MS.gene74342.t1 | AT1G14940 | 26.923 | 156 | 100 | 4 | 1 | 143 | 1 | 155 | 5.17e-14 | 65.5 |
MS.gene74342.t1 | AT4G23680 | 27.152 | 151 | 96 | 4 | 1 | 138 | 1 | 150 | 1.47e-13 | 64.3 |
MS.gene74342.t1 | AT4G14060 | 26.974 | 152 | 97 | 4 | 1 | 139 | 1 | 151 | 2.71e-13 | 63.5 |
MS.gene74342.t1 | AT1G24020 | 28.289 | 152 | 94 | 3 | 1 | 138 | 1 | 151 | 4.77e-13 | 62.8 |
MS.gene74342.t1 | AT1G24020 | 28.289 | 152 | 94 | 3 | 1 | 138 | 1 | 151 | 4.77e-13 | 62.8 |
MS.gene74342.t1 | AT1G14950 | 26.282 | 156 | 101 | 4 | 1 | 143 | 1 | 155 | 7.04e-13 | 62.4 |
MS.gene74342.t1 | AT1G23120 | 27.517 | 149 | 90 | 5 | 3 | 137 | 1 | 145 | 1.28e-11 | 58.9 |
MS.gene74342.t1 | AT1G23120 | 27.333 | 150 | 91 | 5 | 2 | 137 | 50 | 195 | 2.39e-11 | 59.3 |
MS.gene74342.t1 | AT1G14940 | 27.083 | 144 | 99 | 3 | 1 | 143 | 1 | 139 | 3.62e-11 | 57.8 |
MS.gene74342.t1 | AT1G30990 | 26.000 | 150 | 96 | 5 | 1 | 137 | 1 | 148 | 7.34e-11 | 57.0 |
MS.gene74342.t1 | AT3G26460 | 25.490 | 153 | 99 | 4 | 1 | 139 | 1 | 152 | 9.05e-11 | 57.0 |
Find 27 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAATCACATACAAGCTATT+TGG | 0.273919 | 8.4:+55498664 | MS.gene74342:CDS |
TGGAGATATTGAAAACTATA+AGG | 0.391039 | 8.4:+55498687 | MS.gene74342:CDS |
ATGGAAATTCTGCTGTTAGA+TGG | 0.411619 | 8.4:+55498746 | MS.gene74342:CDS |
GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8.4:+55497262 | MS.gene74342:CDS |
AGGTAGTCCATCCAGCCATT+TGG | 0.456227 | 8.4:-55498808 | None:intergenic |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8.4:+55497415 | MS.gene74342:CDS |
AGCTTCATGAGGGTGAAGAT+TGG | 0.493681 | 8.4:+55497374 | MS.gene74342:CDS |
TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8.4:+55498858 | MS.gene74342:CDS |
AGATTGGCATCATACTGATT+CGG | 0.504369 | 8.4:+55497390 | MS.gene74342:CDS |
AAGAGCACTAGAGATATTGA+TGG | 0.505384 | 8.4:+55498835 | MS.gene74342:CDS |
TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8.4:+55498851 | MS.gene74342:CDS |
ATCTTCACCCTCATGAAGCT+TGG | 0.519812 | 8.4:-55497371 | None:intergenic |
ATCACATACAAGCTATTTGG+TGG | 0.530005 | 8.4:+55498667 | MS.gene74342:CDS |
GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8.4:+55497263 | MS.gene74342:CDS |
ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8.4:+55498850 | MS.gene74342:CDS |
AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8.4:-55497295 | None:intergenic |
TATCTCTAGTGCTCTTGCTA+AGG | 0.569595 | 8.4:-55498828 | None:intergenic |
GAAGTGCTTAACAAGGCTGA+TGG | 0.573383 | 8.4:+55498727 | MS.gene74342:CDS |
ATGTTGATACTCCAAATGGC+TGG | 0.578150 | 8.4:+55498797 | MS.gene74342:CDS |
TGATACTCCAAATGGCTGGA+TGG | 0.587093 | 8.4:+55498801 | MS.gene74342:CDS |
GAGGATGTTGATACTCCAAA+TGG | 0.593330 | 8.4:+55498793 | MS.gene74342:CDS |
ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8.4:+55497401 | MS.gene74342:CDS |
TCATCATACCAAGCTTCATG+AGG | 0.610699 | 8.4:+55497363 | MS.gene74342:CDS |
CATCATACCAAGCTTCATGA+GGG | 0.642119 | 8.4:+55497364 | MS.gene74342:CDS |
CATCTTAGAAGTGCTTAACA+AGG | 0.644958 | 8.4:+55498720 | MS.gene74342:CDS |
TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8.4:+55498852 | MS.gene74342:CDS |
TGATTATGAGAAGAACAATG+AGG | 0.694185 | 8.4:+55498774 | MS.gene74342:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTACTATAAAATAGTA+AGG | + | chr8.4:55498172-55498191 | MS.gene74342:intron | 10.0% |
!! | TTATCTTATTATAATATTTC+TGG | + | chr8.4:55498310-55498329 | MS.gene74342:intron | 10.0% |
!!! | TTATTTTACTAAAAACTTTA+AGG | - | chr8.4:55498077-55498096 | None:intergenic | 10.0% |
!! | AAATTCTAAATTAAGTCAAT+AGG | - | chr8.4:55497639-55497658 | None:intergenic | 15.0% |
!! | AGATAATCTATATAAAAAGT+AGG | + | chr8.4:55498010-55498029 | MS.gene74342:intron | 15.0% |
!! | GATAATCTATATAAAAAGTA+GGG | + | chr8.4:55498011-55498030 | MS.gene74342:intron | 15.0% |
!! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8.4:55497525-55497544 | MS.gene74342:intron | 15.0% |
!!! | AAAGCTTATTTTATTCTTTT+TGG | + | chr8.4:55498366-55498385 | MS.gene74342:intron | 15.0% |
!! | CATCATATAAGATCTTTAAA+AGG | + | chr8.4:55498213-55498232 | MS.gene74342:intron | 20.0% |
!!! | GAATAAAATAAGCTTTTCAA+AGG | - | chr8.4:55498362-55498381 | None:intergenic | 20.0% |
! | AAAATCACATACAAGCTATT+TGG | + | chr8.4:55498664-55498683 | MS.gene74342:CDS | 25.0% |
! | AGTAATAAAAAGAAGATTGG+TGG | + | chr8.4:55497528-55497547 | MS.gene74342:intron | 25.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8.4:55497263-55497282 | MS.gene74342:CDS | 25.0% |
! | GTAATAAAAAGAAGATTGGT+GGG | + | chr8.4:55497529-55497548 | MS.gene74342:intron | 25.0% |
! | TATCAAACAAGATGATGATT+TGG | - | chr8.4:55497467-55497486 | None:intergenic | 25.0% |
! | TCTTCGTTATAGAATTCATT+TGG | - | chr8.4:55497565-55497584 | None:intergenic | 25.0% |
! | TGGAGATATTGAAAACTATA+AGG | + | chr8.4:55498687-55498706 | MS.gene74342:CDS | 25.0% |
! | TTATCTCTAGACAAAAAATC+TGG | - | chr8.4:55497996-55498015 | None:intergenic | 25.0% |
!!! | ATCTTTAAAAGGTGTTTTAG+AGG | + | chr8.4:55498224-55498243 | MS.gene74342:intron | 25.0% |
AAAAAATTATACCCGTACCA+TGG | - | chr8.4:55497951-55497970 | None:intergenic | 30.0% | |
GGTAAACTTATTACTGAACT+TGG | + | chr8.4:55497262-55497281 | MS.gene74342:CDS | 30.0% | |
GTTTGTATGATATGATCCTT+CGG | + | chr8.4:55498033-55498052 | MS.gene74342:intron | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8.4:55498774-55498793 | MS.gene74342:CDS | 30.0% | |
TGTGACCAAAGAAAATTTCT+TGG | - | chr8.4:55498469-55498488 | None:intergenic | 30.0% | |
AAACACTGGACTTATGTCAT+AGG | + | chr8.4:55497415-55497434 | MS.gene74342:CDS | 35.0% | |
AAAGCAACAAATGACCCTAA+AGG | + | chr8.4:55497893-55497912 | MS.gene74342:intron | 35.0% | |
AATGAGGAGAAATTCTTAGG+TGG | + | chr8.4:55498436-55498455 | MS.gene74342:intron | 35.0% | |
AGTAGCATCTCTTTCCTTTA+GGG | - | chr8.4:55497910-55497929 | None:intergenic | 35.0% | |
ATCACATACAAGCTATTTGG+TGG | + | chr8.4:55498667-55498686 | MS.gene74342:CDS | 35.0% | |
ATGGAAATTCTGCTGTTAGA+TGG | + | chr8.4:55498746-55498765 | MS.gene74342:CDS | 35.0% | |
CAAAGAAAATTTCTTGGTCC+TGG | - | chr8.4:55498463-55498482 | None:intergenic | 35.0% | |
TATCGAAATCATTGTACACG+AGG | + | chr8.4:55497743-55497762 | MS.gene74342:intron | 35.0% | |
TGCAATGAGGAGAAATTCTT+AGG | + | chr8.4:55498433-55498452 | MS.gene74342:intron | 35.0% | |
TGTGACCAAACCAAATTTCT+TGG | + | chr8.4:55498578-55498597 | MS.gene74342:intron | 35.0% | |
! | AGATTGGCATCATACTGATT+CGG | + | chr8.4:55497390-55497409 | MS.gene74342:CDS | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8.4:55498850-55498869 | MS.gene74342:CDS | 35.0% |
! | CAGGACCAAGAAATTTTCTT+TGG | + | chr8.4:55498461-55498480 | MS.gene74342:intron | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8.4:55498851-55498870 | MS.gene74342:CDS | 35.0% |
!! | AAGAGCACTAGAGATATTGA+TGG | + | chr8.4:55498835-55498854 | MS.gene74342:CDS | 35.0% |
!! | ATACTGATTCGGTTAAACAC+TGG | + | chr8.4:55497401-55497420 | MS.gene74342:CDS | 35.0% |
!! | CATCTTAGAAGTGCTTAACA+AGG | + | chr8.4:55498720-55498739 | MS.gene74342:CDS | 35.0% |
AACCACCTTTGTATTCACCA+TGG | + | chr8.4:55497931-55497950 | MS.gene74342:intron | 40.0% | |
AGTTTGTAGAACTTGTCAGC+TGG | - | chr8.4:55497298-55497317 | None:intergenic | 40.0% | |
ATGTTGATACTCCAAATGGC+TGG | + | chr8.4:55498797-55498816 | MS.gene74342:CDS | 40.0% | |
CAAACCAAATTTCTTGGTCC+TGG | + | chr8.4:55498584-55498603 | MS.gene74342:intron | 40.0% | |
CAGGACCAAGAAATTTGGTT+TGG | - | chr8.4:55498586-55498605 | None:intergenic | 40.0% | |
CATCATACCAAGCTTCATGA+GGG | + | chr8.4:55497364-55497383 | MS.gene74342:CDS | 40.0% | |
CCTTTGTATTCACCATGGTA+CGG | + | chr8.4:55497936-55497955 | MS.gene74342:intron | 40.0% | |
CTTTGTATTCACCATGGTAC+GGG | + | chr8.4:55497937-55497956 | MS.gene74342:intron | 40.0% | |
GAGGATGTTGATACTCCAAA+TGG | + | chr8.4:55498793-55498812 | MS.gene74342:CDS | 40.0% | |
GAGTAGCATCTCTTTCCTTT+AGG | - | chr8.4:55497911-55497930 | None:intergenic | 40.0% | |
TACCATGGTGAATACAAAGG+TGG | - | chr8.4:55497936-55497955 | None:intergenic | 40.0% | |
TATCTCTAGTGCTCTTGCTA+AGG | - | chr8.4:55498831-55498850 | None:intergenic | 40.0% | |
TCATCATACCAAGCTTCATG+AGG | + | chr8.4:55497363-55497382 | MS.gene74342:CDS | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8.4:55498858-55498877 | MS.gene74342:CDS | 40.0% | |
TGAACCAGGACCAAGAAATT+TGG | - | chr8.4:55498591-55498610 | None:intergenic | 40.0% | |
TGAGACTGATCTAACAACGA+AGG | + | chr8.4:55497602-55497621 | MS.gene74342:intron | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8.4:55498852-55498871 | MS.gene74342:CDS | 40.0% | |
! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8.4:55498052-55498071 | None:intergenic | 40.0% |
AGCTTCATGAGGGTGAAGAT+TGG | + | chr8.4:55497374-55497393 | MS.gene74342:CDS | 45.0% | |
ATCTTCACCCTCATGAAGCT+TGG | - | chr8.4:55497374-55497393 | None:intergenic | 45.0% | |
CCGTACCATGGTGAATACAA+AGG | - | chr8.4:55497939-55497958 | None:intergenic | 45.0% | |
GAGAAACTCTTGTGTGAACC+AGG | - | chr8.4:55498605-55498624 | None:intergenic | 45.0% | |
GAGAAATTCTTAGGTGGTCC+AGG | + | chr8.4:55498442-55498461 | MS.gene74342:intron | 45.0% | |
GCCATCTGTTGTTATGTCAG+AGG | - | chr8.4:55498401-55498420 | None:intergenic | 45.0% | |
GCCTCTGACATAACAACAGA+TGG | + | chr8.4:55498397-55498416 | MS.gene74342:intron | 45.0% | |
TGACATAACAACAGATGGCG+AGG | + | chr8.4:55498402-55498421 | MS.gene74342:intron | 45.0% | |
TGATACTCCAAATGGCTGGA+TGG | + | chr8.4:55498801-55498820 | MS.gene74342:CDS | 45.0% | |
TTGTACACGAGGTGAAGTAC+TGG | + | chr8.4:55497754-55497773 | MS.gene74342:intron | 45.0% | |
! | GAAGTGCTTAACAAGGCTGA+TGG | + | chr8.4:55498727-55498746 | MS.gene74342:CDS | 45.0% |
!! | AAATAATATATATTATGAAT+GGG | - | chr8.4:55497848-55497867 | None:intergenic | 5.0% |
!! | AATATATATTATTTAGAAAA+AGG | + | chr8.4:55497854-55497873 | MS.gene74342:intron | 5.0% |
!! | AATTAATAAAAAAAAAGTAA+CGG | - | chr8.4:55497808-55497827 | None:intergenic | 5.0% |
!! | TAAATAATATATATTATGAA+TGG | - | chr8.4:55497849-55497868 | None:intergenic | 5.0% |
!!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8.4:55497646-55497665 | MS.gene74342:intron | 5.0% |
AGGTAGTCCATCCAGCCATT+TGG | - | chr8.4:55498811-55498830 | None:intergenic | 50.0% | |
CGAGGTACACACATGCAATG+AGG | + | chr8.4:55498420-55498439 | MS.gene74342:intron | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 55497250 | 55498891 | 55497250 | ID=MS.gene74342 |
chr8.4 | mRNA | 55497250 | 55498891 | 55497250 | ID=MS.gene74342.t1;Parent=MS.gene74342 |
chr8.4 | exon | 55497250 | 55497436 | 55497250 | ID=MS.gene74342.t1.exon1;Parent=MS.gene74342.t1 |
chr8.4 | CDS | 55497250 | 55497436 | 55497250 | ID=cds.MS.gene74342.t1;Parent=MS.gene74342.t1 |
chr8.4 | exon | 55498644 | 55498891 | 55498644 | ID=MS.gene74342.t1.exon2;Parent=MS.gene74342.t1 |
chr8.4 | CDS | 55498644 | 55498891 | 55498644 | ID=cds.MS.gene74342.t1;Parent=MS.gene74342.t1 |
Gene Sequence |
Protein sequence |