Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89562.t1 | XP_003625359.2 | 100 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.20E-72 | 282.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89562.t1 | P49690 | 97.1 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 1.2e-73 | 276.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89562.t1 | B7FMQ6 | 100.0 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 8.6e-73 | 282.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene89562 | 0.865035 | 7.90E-65 | -1.69E-46 |
| MS.gene049340 | MS.gene89562 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene049341 | MS.gene89562 | 0.860813 | 1.59E-63 | -1.69E-46 |
| MS.gene049580 | MS.gene89562 | 0.816964 | 4.22E-52 | -1.69E-46 |
| MS.gene049756 | MS.gene89562 | 0.805855 | 1.09E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene89562 | 0.836085 | 1.15E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene89562 | 0.833773 | 4.40E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene89562 | 0.832827 | 7.57E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene89562 | 0.819182 | 1.33E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene89562 | 0.804853 | 1.77E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene89562 | 0.908575 | 1.47E-81 | -1.69E-46 |
| MS.gene050303 | MS.gene89562 | 0.86501 | 8.05E-65 | -1.69E-46 |
| MS.gene050752 | MS.gene89562 | 0.814867 | 1.24E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene89562 | 0.836872 | 7.25E-57 | -1.69E-46 |
| MS.gene050815 | MS.gene89562 | 0.802754 | 4.83E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene89562 | 0.845892 | 3.06E-59 | -1.69E-46 |
| MS.gene050916 | MS.gene89562 | 0.857995 | 1.12E-62 | -1.69E-46 |
| MS.gene050955 | MS.gene89562 | 0.805277 | 1.44E-49 | -1.69E-46 |
| MS.gene051063 | MS.gene89562 | 0.821698 | 3.52E-53 | -1.69E-46 |
| MS.gene051241 | MS.gene89562 | 0.806184 | 9.30E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene89562 | 0.802789 | 4.75E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene89562 | 0.849888 | 2.42E-60 | -1.69E-46 |
| MS.gene051330 | MS.gene89562 | 0.874231 | 7.94E-68 | -1.69E-46 |
| MS.gene051343 | MS.gene89562 | 0.810996 | 8.73E-51 | -1.69E-46 |
| MS.gene05134 | MS.gene89562 | 0.87668 | 1.15E-68 | -1.69E-46 |
| MS.gene051451 | MS.gene89562 | 0.821676 | 3.56E-53 | -1.69E-46 |
| MS.gene051633 | MS.gene89562 | 0.818434 | 1.96E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene89562 | 0.847152 | 1.39E-59 | -1.69E-46 |
| MS.gene051746 | MS.gene89562 | 0.866616 | 2.50E-65 | -1.69E-46 |
| MS.gene051748 | MS.gene89562 | 0.858071 | 1.06E-62 | -1.69E-46 |
| MS.gene051791 | MS.gene89562 | 0.814394 | 1.58E-51 | -1.69E-46 |
| MS.gene051850 | MS.gene89562 | 0.825593 | 4.31E-54 | -1.69E-46 |
| MS.gene05188 | MS.gene89562 | 0.839516 | 1.51E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene89562 | 0.883348 | 4.84E-71 | -1.69E-46 |
| MS.gene051975 | MS.gene89562 | 0.806855 | 6.72E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene89562 | 0.873448 | 1.46E-67 | -1.69E-46 |
| MS.gene052286 | MS.gene89562 | 0.824291 | 8.74E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene89562 | 0.843214 | 1.61E-58 | -1.69E-46 |
| MS.gene052376 | MS.gene89562 | 0.841639 | 4.21E-58 | -1.69E-46 |
| MS.gene052879 | MS.gene89562 | 0.837483 | 5.06E-57 | -1.69E-46 |
| MS.gene052880 | MS.gene89562 | 0.819479 | 1.14E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene89562 | 0.927385 | 1.27E-91 | -1.69E-46 |
| MS.gene053058 | MS.gene89562 | 0.811029 | 8.59E-51 | -1.69E-46 |
| MS.gene053109 | MS.gene89562 | 0.820321 | 7.30E-53 | -1.69E-46 |
| MS.gene053122 | MS.gene89562 | 0.819531 | 1.11E-52 | -1.69E-46 |
| MS.gene053132 | MS.gene89562 | 0.804299 | 2.31E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene89562 | 0.808843 | 2.54E-50 | -1.69E-46 |
| MS.gene053230 | MS.gene89562 | 0.800869 | 1.18E-48 | -1.69E-46 |
| MS.gene053294 | MS.gene89562 | 0.825814 | 3.82E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene89562 | 0.818024 | 2.43E-52 | -1.69E-46 |
| MS.gene053599 | MS.gene89562 | 0.803289 | 3.74E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene89562 | 0.818973 | 1.48E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene89562 | 0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene054403 | MS.gene89562 | 0.818108 | 2.33E-52 | -1.69E-46 |
| MS.gene055162 | MS.gene89562 | 0.811495 | 6.81E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene89562 | 0.82814 | 1.06E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene89562 | 0.808422 | 3.12E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene89562 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene055512 | MS.gene89562 | 0.814081 | 1.85E-51 | -1.69E-46 |
| MS.gene055555 | MS.gene89562 | 0.837342 | 5.50E-57 | -1.69E-46 |
| MS.gene055580 | MS.gene89562 | -0.823259 | 1.52E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene89562 | 0.900812 | 5.04E-78 | -1.69E-46 |
| MS.gene055912 | MS.gene89562 | 0.806492 | 8.01E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene89562 | -0.825142 | 5.51E-54 | -1.69E-46 |
| MS.gene056075 | MS.gene89562 | 0.8616 | 9.15E-64 | -1.69E-46 |
| MS.gene056091 | MS.gene89562 | 0.871557 | 6.24E-67 | -1.69E-46 |
| MS.gene056215 | MS.gene89562 | 0.843452 | 1.39E-58 | -1.69E-46 |
| MS.gene056580 | MS.gene89562 | 0.81393 | 1.99E-51 | -1.69E-46 |
| MS.gene056601 | MS.gene89562 | 0.835099 | 2.04E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene89562 | 0.9081 | 2.47E-81 | -1.69E-46 |
| MS.gene056760 | MS.gene89562 | 0.808309 | 3.30E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene89562 | 0.815021 | 1.14E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene89562 | 0.824756 | 6.79E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene89562 | 0.819881 | 9.20E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene89562 | 0.824617 | 7.33E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene89562 | 0.85461 | 1.10E-61 | -1.69E-46 |
| MS.gene057140 | MS.gene89562 | 0.81605 | 6.75E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene89562 | 0.845232 | 4.62E-59 | -1.69E-46 |
| MS.gene057287 | MS.gene89562 | 0.81377 | 2.16E-51 | -1.69E-46 |
| MS.gene057555 | MS.gene89562 | 0.81566 | 8.25E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene89562 | 0.813575 | 2.39E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene89562 | 0.909356 | 6.23E-82 | -1.69E-46 |
| MS.gene05795 | MS.gene89562 | 0.819925 | 8.99E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene89562 | 0.800672 | 1.29E-48 | -1.69E-46 |
| MS.gene058055 | MS.gene89562 | 0.834526 | 2.85E-56 | -1.69E-46 |
| MS.gene058074 | MS.gene89562 | 0.811801 | 5.84E-51 | -1.69E-46 |
| MS.gene058084 | MS.gene89562 | 0.824434 | 8.09E-54 | -1.69E-46 |
| MS.gene058216 | MS.gene89562 | 0.833085 | 6.53E-56 | -1.69E-46 |
| MS.gene058238 | MS.gene89562 | 0.872338 | 3.43E-67 | -1.69E-46 |
| MS.gene058852 | MS.gene89562 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene89562 | 0.857323 | 1.77E-62 | -1.69E-46 |
| MS.gene059317 | MS.gene89562 | 0.828303 | 9.69E-55 | -1.69E-46 |
| MS.gene05953 | MS.gene89562 | 0.84178 | 3.86E-58 | -1.69E-46 |
| MS.gene05954 | MS.gene89562 | 0.843447 | 1.39E-58 | -1.69E-46 |
| MS.gene05978 | MS.gene89562 | 0.825802 | 3.84E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene89562 | 0.807186 | 5.72E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene89562 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene89562 | 0.933817 | 1.05E-95 | -1.69E-46 |
| MS.gene060365 | MS.gene89562 | 0.800921 | 1.15E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene89562 | 0.908786 | 1.17E-81 | -1.69E-46 |
| MS.gene060586 | MS.gene89562 | 0.826441 | 2.71E-54 | -1.69E-46 |
| MS.gene060587 | MS.gene89562 | 0.827126 | 1.86E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene89562 | 0.804289 | 2.32E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene89562 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene060907 | MS.gene89562 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene060917 | MS.gene89562 | 0.869947 | 2.11E-66 | -1.69E-46 |
| MS.gene061176 | MS.gene89562 | 0.814002 | 1.92E-51 | -1.69E-46 |
| MS.gene061177 | MS.gene89562 | 0.814453 | 1.53E-51 | -1.69E-46 |
| MS.gene061178 | MS.gene89562 | 0.813484 | 2.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89562.t1 | MTR_7g098290 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.96e-99 | 281 |
| MS.gene89562.t1 | MTR_1g069585 | 100.000 | 140 | 0 | 0 | 1 | 140 | 1 | 140 | 1.96e-99 | 281 |
| MS.gene89562.t1 | MTR_7g098290 | 100.000 | 125 | 0 | 0 | 16 | 140 | 1 | 125 | 4.58e-88 | 252 |
| MS.gene89562.t1 | MTR_1g026090 | 80.000 | 135 | 12 | 1 | 2 | 136 | 42 | 161 | 7.11e-70 | 208 |
| MS.gene89562.t1 | MTR_5g054560 | 67.200 | 125 | 17 | 1 | 16 | 140 | 1 | 101 | 4.13e-52 | 160 |
| MS.gene89562.t1 | MTR_5g464620 | 87.755 | 49 | 6 | 0 | 14 | 62 | 16 | 64 | 1.08e-24 | 90.5 |
| MS.gene89562.t1 | MTR_2g070580 | 90.244 | 41 | 4 | 0 | 100 | 140 | 87 | 127 | 1.94e-20 | 81.3 |
| MS.gene89562.t1 | MTR_1779s0020 | 37.391 | 115 | 64 | 3 | 26 | 136 | 8 | 118 | 3.53e-16 | 70.1 |
| MS.gene89562.t1 | MTR_4g051390 | 37.391 | 115 | 64 | 3 | 26 | 136 | 8 | 118 | 6.24e-16 | 69.3 |
| MS.gene89562.t1 | MTR_2g087550 | 37.736 | 106 | 59 | 2 | 26 | 128 | 8 | 109 | 2.08e-14 | 67.4 |
| MS.gene89562.t1 | MTR_0002s0780 | 35.246 | 122 | 72 | 3 | 23 | 140 | 132 | 250 | 2.22e-14 | 67.8 |
| MS.gene89562.t1 | MTR_4g066540 | 72.500 | 40 | 7 | 1 | 100 | 139 | 54 | 89 | 7.52e-11 | 55.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89562.t1 | AT3G04400 | 97.143 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 2.33e-97 | 276 |
| MS.gene89562.t1 | AT2G33370 | 97.143 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 2.33e-97 | 276 |
| MS.gene89562.t1 | AT1G04480 | 97.143 | 140 | 4 | 0 | 1 | 140 | 1 | 140 | 2.33e-97 | 276 |
| MS.gene89562.t1 | AT3G04400 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 1.18e-86 | 248 |
| MS.gene89562.t1 | AT2G33370 | 98.400 | 125 | 2 | 0 | 16 | 140 | 1 | 125 | 1.18e-86 | 248 |
| MS.gene89562.t1 | ATCG00780 | 34.783 | 115 | 67 | 3 | 26 | 136 | 8 | 118 | 1.22e-14 | 66.2 |
Find 50 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGGAATGTGCTGATCTT+TGG | 0.329007 | 1.1:+51328075 | MS.gene89562:CDS |
| ATACCTTTCATTTCTCCCTT+AGG | 0.394994 | 1.1:-51327726 | None:intergenic |
| CCTACCCTTGATTCCCTTCA+CGG | 0.405364 | 1.1:-51326702 | None:intergenic |
| TCAGCACATTCCTTAGCAAT+TGG | 0.405879 | 1.1:-51328068 | None:intergenic |
| GAACAAGTTCCGTATGTCAC+TGG | 0.413902 | 1.1:+51326613 | MS.gene89562:CDS |
| ACATGAAGACACCGTCCTTT+CGG | 0.413999 | 1.1:-51326847 | None:intergenic |
| AAAACCTTCTTCCTGAGATC+AGG | 0.427356 | 1.1:-51326788 | None:intergenic |
| CGTCTTCCTTCAGCTTGTGC+TGG | 0.450748 | 1.1:+51326731 | MS.gene89562:CDS |
| TTAGGTCGTGGTGGTTCCGC+GGG | 0.471837 | 1.1:+51326590 | MS.gene89562:intron |
| CATATCCGTGAAGGGAATCA+AGG | 0.482700 | 1.1:+51326697 | MS.gene89562:CDS |
| TTCAGCTTGTGCTGGTGACA+TGG | 0.489849 | 1.1:+51326739 | MS.gene89562:CDS |
| TTGGCAGCACTTGCAATCCT+AGG | 0.493302 | 1.1:-51328098 | None:intergenic |
| GGTGTCTTCATGTACTTTGA+AGG | 0.499615 | 1.1:+51326857 | MS.gene89562:CDS |
| CGCTGACGAACGATGACAGC+TGG | 0.521156 | 1.1:-51326812 | None:intergenic |
| AGAAGGGAAAGCCTGATCTC+AGG | 0.525390 | 1.1:+51326777 | MS.gene89562:CDS |
| CAGTTCACCGTCGCCGCCAC+TGG | 0.528733 | 1.1:-51326641 | None:intergenic |
| TTGTGCTGGTGACATGGTGA+TGG | 0.531038 | 1.1:+51326745 | MS.gene89562:CDS |
| AATGTGCTGATCTTTGGCCT+AGG | 0.543147 | 1.1:+51328081 | MS.gene89562:CDS |
| ACACCGTCCTTTCGGCGCCA+TGG | 0.546165 | 1.1:-51326839 | None:intergenic |
| ATTGTAGGTTCTGCTATCAC+CGG | 0.549900 | 1.1:+51328044 | MS.gene89562:intron |
| AACAAGTTCCGTATGTCACT+GGG | 0.554811 | 1.1:+51326614 | MS.gene89562:CDS |
| GGTGATGGCTACTGTGAAGA+AGG | 0.561037 | 1.1:+51326760 | MS.gene89562:CDS |
| CAGAATCCACACTCATACAA+TGG | 0.562785 | 1.1:-51328123 | None:intergenic |
| GATGTACAGATTCTTTGCTC+CGG | 0.563000 | 1.1:-51326675 | None:intergenic |
| ATTAGGTCGTGGTGGTTCCG+CGG | 0.570592 | 1.1:+51326589 | MS.gene89562:intron |
| CTGGTAGACCCAGTGACATA+CGG | 0.574663 | 1.1:-51326622 | None:intergenic |
| AAGCCATGGCGCCGAAAGGA+CGG | 0.575094 | 1.1:+51326836 | MS.gene89562:CDS |
| GGGTCTACCAGTGGCGGCGA+CGG | 0.576990 | 1.1:+51326634 | MS.gene89562:CDS |
| AAAGCCTGATCTCAGGAAGA+AGG | 0.579578 | 1.1:+51326784 | MS.gene89562:CDS |
| TGGTGTCATTGTGAATCCTA+AGG | 0.581900 | 1.1:+51327710 | MS.gene89562:CDS |
| CCACACTCATACAATGGCAT+TGG | 0.586391 | 1.1:-51328117 | None:intergenic |
| TCTGTACATCATATCCGTGA+AGG | 0.586813 | 1.1:+51326688 | MS.gene89562:CDS |
| ACATTCCTTAGCAATTGGAC+CGG | 0.593816 | 1.1:-51328063 | None:intergenic |
| AATCCTAAGGGAGAAATGAA+AGG | 0.599885 | 1.1:+51327723 | MS.gene89562:CDS |
| TCGTTCGTCAGCGTAAGCCA+TGG | 0.601755 | 1.1:+51326822 | MS.gene89562:CDS |
| GCGTAAGCCATGGCGCCGAA+AGG | 0.602704 | 1.1:+51326832 | MS.gene89562:CDS |
| TATCACCGGTCCAATTGCTA+AGG | 0.605693 | 1.1:+51328058 | MS.gene89562:CDS |
| CTGTACATCATATCCGTGAA+GGG | 0.613193 | 1.1:+51326689 | MS.gene89562:CDS |
| ATGTCACCAGCACAAGCTGA+AGG | 0.618315 | 1.1:-51326737 | None:intergenic |
| AACGAAACCATGTCGAAGAG+AGG | 0.621677 | 1.1:+51326478 | None:intergenic |
| ATATCCGTGAAGGGAATCAA+GGG | 0.625374 | 1.1:+51326698 | MS.gene89562:CDS |
| GTCACTGGGTCTACCAGTGG+CGG | 0.643029 | 1.1:+51326628 | MS.gene89562:CDS |
| GTACATACCTCTCTTCGACA+TGG | 0.650721 | 1.1:-51326485 | None:intergenic |
| CCGTGAAGGGAATCAAGGGT+AGG | 0.651559 | 1.1:+51326702 | MS.gene89562:CDS |
| GGTGTCATTGTGAATCCTAA+GGG | 0.659767 | 1.1:+51327711 | MS.gene89562:CDS |
| TATGTCACTGGGTCTACCAG+TGG | 0.664327 | 1.1:+51326625 | MS.gene89562:CDS |
| GTGATGGCTACTGTGAAGAA+GGG | 0.669945 | 1.1:+51326761 | MS.gene89562:CDS |
| GTGAACTGTGCTGATAACAC+CGG | 0.699857 | 1.1:+51326656 | MS.gene89562:CDS |
| TAGGTCGTGGTGGTTCCGCG+GGG | 0.708397 | 1.1:+51326591 | MS.gene89562:intron |
| CATACGGAACTTGTTCCCCG+CGG | 0.790506 | 1.1:-51326606 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAATCAATTAGACAAAA+CGG | - | chr1.1:51327981-51328000 | None:intergenic | 20.0% |
| !! | ATAATTGATTATGACATGTT+TGG | - | chr1.1:51327378-51327397 | None:intergenic | 20.0% |
| !! | ATATCAATTCAATCATTGTA+CGG | + | chr1.1:51327560-51327579 | MS.gene89562:intron | 20.0% |
| !! | TTTAACAGAAATCAATTTCA+AGG | - | chr1.1:51327118-51327137 | None:intergenic | 20.0% |
| !! | TTTCTATGTAGTAAATACTT+AGG | + | chr1.1:51327768-51327787 | MS.gene89562:intron | 20.0% |
| !!! | TACACTTTTAGAATCAAATT+TGG | + | chr1.1:51327397-51327416 | MS.gene89562:intron | 20.0% |
| !!! | TTTTAATTATGTCTTAATGC+CGG | + | chr1.1:51327644-51327663 | MS.gene89562:intron | 20.0% |
| ! | AAAACAATTGAATCTGAGAA+AGG | - | chr1.1:51326524-51326543 | None:intergenic | 25.0% |
| ! | AAGCAACATTTCAAAATCAA+AGG | - | chr1.1:51326913-51326932 | None:intergenic | 25.0% |
| ! | AATTGATATTAGCTAAAGAG+AGG | - | chr1.1:51327549-51327568 | None:intergenic | 25.0% |
| ! | CTCTTGTTAATATTTGGTAT+TGG | + | chr1.1:51327671-51327690 | MS.gene89562:intron | 25.0% |
| !! | AAATATTAACAAGAGTACAC+CGG | - | chr1.1:51327666-51327685 | None:intergenic | 25.0% |
| !! | AGTGAGTTGAACATAAAATT+TGG | + | chr1.1:51327279-51327298 | MS.gene89562:intron | 25.0% |
| !! | CTATTTATTGGAAGTTTTTG+AGG | + | chr1.1:51327440-51327459 | MS.gene89562:intron | 25.0% |
| !! | GTGAGTTGAACATAAAATTT+GGG | + | chr1.1:51327280-51327299 | MS.gene89562:intron | 25.0% |
| AACATATTTGCATGAGCATT+AGG | - | chr1.1:51327795-51327814 | None:intergenic | 30.0% | |
| AATTAGACAAAACGGTACAA+AGG | - | chr1.1:51327973-51327992 | None:intergenic | 30.0% | |
| ACATTGTAACAATAGCCAAA+AGG | - | chr1.1:51327872-51327891 | None:intergenic | 30.0% | |
| CATTTCAAAATCAAAGGAAC+AGG | - | chr1.1:51326907-51326926 | None:intergenic | 30.0% | |
| GGTAACTTGAAGCTATTTAT+TGG | + | chr1.1:51327428-51327447 | MS.gene89562:intron | 30.0% | |
| GGTGTACTCTTGTTAATATT+TGG | + | chr1.1:51327665-51327684 | MS.gene89562:intron | 30.0% | |
| TAGCAAACTAACAAAAAGAC+AGG | - | chr1.1:51327942-51327961 | None:intergenic | 30.0% | |
| ! | ATTGATTCATTGCTGGTATT+CGG | + | chr1.1:51327990-51328009 | MS.gene89562:intron | 30.0% |
| ! | TCTGATTGGTCATTCATATT+GGG | + | chr1.1:51326961-51326980 | MS.gene89562:intron | 30.0% |
| ! | TGTATCCCTATTTTCTGATT+AGG | + | chr1.1:51326572-51326591 | MS.gene89562:intron | 30.0% |
| ! | TTCTGATTGGTCATTCATAT+TGG | + | chr1.1:51326960-51326979 | MS.gene89562:intron | 30.0% |
| ! | TTGTCTAATTGATTCATTGC+TGG | + | chr1.1:51327983-51328002 | MS.gene89562:intron | 30.0% |
| !! | TTTTGGCTATTGTTACAATG+TGG | + | chr1.1:51327871-51327890 | MS.gene89562:intron | 30.0% |
| !!! | TACATTTTAGAATCAAGAGC+AGG | + | chr1.1:51327311-51327330 | MS.gene89562:intron | 30.0% |
| AATCCTAAGGGAGAAATGAA+AGG | + | chr1.1:51327723-51327742 | MS.gene89562:CDS | 35.0% | |
| AGAATCAAATTTGGTTGCTC+TGG | + | chr1.1:51327406-51327425 | MS.gene89562:intron | 35.0% | |
| ATACCTTTCATTTCTCCCTT+AGG | - | chr1.1:51327729-51327748 | None:intergenic | 35.0% | |
| CAAACTAACAAAAAGACAGG+TGG | - | chr1.1:51327939-51327958 | None:intergenic | 35.0% | |
| CACGACCTAATCAGAAAATA+GGG | - | chr1.1:51326580-51326599 | None:intergenic | 35.0% | |
| GAATCAAATTTGGTTGCTCT+GGG | + | chr1.1:51327407-51327426 | MS.gene89562:intron | 35.0% | |
| TATGTCATGCTGTTCATTGT+AGG | + | chr1.1:51328029-51328048 | MS.gene89562:intron | 35.0% | |
| ! | CTGATTGGTCATTCATATTG+GGG | + | chr1.1:51326962-51326981 | MS.gene89562:intron | 35.0% |
| !! | TTGGTTTTTGCAGATAATGC+TGG | + | chr1.1:51327690-51327709 | MS.gene89562:intron | 35.0% |
| AAAACCTTCTTCCTGAGATC+AGG | - | chr1.1:51326791-51326810 | None:intergenic | 40.0% | |
| AACAAGTTCCGTATGTCACT+GGG | + | chr1.1:51326614-51326633 | MS.gene89562:CDS | 40.0% | |
| ACATTCCTTAGCAATTGGAC+CGG | - | chr1.1:51328066-51328085 | None:intergenic | 40.0% | |
| ATATCCGTGAAGGGAATCAA+GGG | + | chr1.1:51326698-51326717 | MS.gene89562:CDS | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+CGG | + | chr1.1:51328044-51328063 | MS.gene89562:intron | 40.0% | |
| CCACGACCTAATCAGAAAAT+AGG | - | chr1.1:51326581-51326600 | None:intergenic | 40.0% | |
| CTGTACATCATATCCGTGAA+GGG | + | chr1.1:51326689-51326708 | MS.gene89562:CDS | 40.0% | |
| GATGTACAGATTCTTTGCTC+CGG | - | chr1.1:51326678-51326697 | None:intergenic | 40.0% | |
| GGTGTCTTCATGTACTTTGA+AGG | + | chr1.1:51326857-51326876 | MS.gene89562:CDS | 40.0% | |
| TATGACATGTTTGGTTGCTC+TGG | - | chr1.1:51327369-51327388 | None:intergenic | 40.0% | |
| TCAGCACATTCCTTAGCAAT+TGG | - | chr1.1:51328071-51328090 | None:intergenic | 40.0% | |
| TCTGTACATCATATCCGTGA+AGG | + | chr1.1:51326688-51326707 | MS.gene89562:CDS | 40.0% | |
| TGAGTGATCTGTGTTCTGAT+TGG | + | chr1.1:51326947-51326966 | MS.gene89562:intron | 40.0% | |
| ! | ATTTTCTGATTAGGTCGTGG+TGG | + | chr1.1:51326581-51326600 | MS.gene89562:intron | 40.0% |
| ! | CACATCATGCTGTTTAAGAC+TGG | - | chr1.1:51327009-51327028 | None:intergenic | 40.0% |
| ! | CCTATTTTCTGATTAGGTCG+TGG | + | chr1.1:51326578-51326597 | MS.gene89562:intron | 40.0% |
| ! | CTAAGGAATGTGCTGATCTT+TGG | + | chr1.1:51328075-51328094 | MS.gene89562:CDS | 40.0% |
| !! | GGTGTCATTGTGAATCCTAA+GGG | + | chr1.1:51327711-51327730 | MS.gene89562:CDS | 40.0% |
| !! | TGGTGTCATTGTGAATCCTA+AGG | + | chr1.1:51327710-51327729 | MS.gene89562:CDS | 40.0% |
| AAAGCCTGATCTCAGGAAGA+AGG | + | chr1.1:51326784-51326803 | MS.gene89562:CDS | 45.0% | |
| AACGAGATTTACCAGCAGAC+AGG | - | chr1.1:51327053-51327072 | None:intergenic | 45.0% | |
| ACATGAAGACACCGTCCTTT+CGG | - | chr1.1:51326850-51326869 | None:intergenic | 45.0% | |
| CATATCCGTGAAGGGAATCA+AGG | + | chr1.1:51326697-51326716 | MS.gene89562:CDS | 45.0% | |
| GAACAAGTTCCGTATGTCAC+TGG | + | chr1.1:51326613-51326632 | MS.gene89562:CDS | 45.0% | |
| GTGATGGCTACTGTGAAGAA+GGG | + | chr1.1:51326761-51326780 | MS.gene89562:CDS | 45.0% | |
| TATCACCGGTCCAATTGCTA+AGG | + | chr1.1:51328058-51328077 | MS.gene89562:CDS | 45.0% | |
| ! | AATGTGCTGATCTTTGGCCT+AGG | + | chr1.1:51328081-51328100 | MS.gene89562:CDS | 45.0% |
| ! | ACACTTGCTTCAGTGCCTTT+TGG | + | chr1.1:51327854-51327873 | MS.gene89562:intron | 45.0% |
| ! | GTGAACTGTGCTGATAACAC+CGG | + | chr1.1:51326656-51326675 | MS.gene89562:CDS | 45.0% |
| ! | TCGAAGAGAGGTATGTACAG+TGG | + | chr1.1:51326490-51326509 | MS.gene89562:intron | 45.0% |
| AGAAGGGAAAGCCTGATCTC+AGG | + | chr1.1:51326777-51326796 | MS.gene89562:CDS | 50.0% | |
| ATGTCACCAGCACAAGCTGA+AGG | - | chr1.1:51326740-51326759 | None:intergenic | 50.0% | |
| CCTACCCTTGATTCCCTTCA+CGG | - | chr1.1:51326705-51326724 | None:intergenic | 50.0% | |
| CTGGTAGACCCAGTGACATA+CGG | - | chr1.1:51326625-51326644 | None:intergenic | 50.0% | |
| TATGTCACTGGGTCTACCAG+TGG | + | chr1.1:51326625-51326644 | MS.gene89562:CDS | 50.0% | |
| TCATTGTGCTACCTGTCTGC+TGG | + | chr1.1:51327039-51327058 | MS.gene89562:intron | 50.0% | |
| TTGGCAGCACTTGCAATCCT+AGG | - | chr1.1:51328101-51328120 | None:intergenic | 50.0% | |
| ! | GGTGATGGCTACTGTGAAGA+AGG | + | chr1.1:51326760-51326779 | MS.gene89562:CDS | 50.0% |
| ! | TTCAGCTTGTGCTGGTGACA+TGG | + | chr1.1:51326739-51326758 | MS.gene89562:CDS | 50.0% |
| ! | TTGTGCTGGTGACATGGTGA+TGG | + | chr1.1:51326745-51326764 | MS.gene89562:CDS | 50.0% |
| ATTAGGTCGTGGTGGTTCCG+CGG | + | chr1.1:51326589-51326608 | MS.gene89562:intron | 55.0% | |
| CCGTGAAGGGAATCAAGGGT+AGG | + | chr1.1:51326702-51326721 | MS.gene89562:CDS | 55.0% | |
| CGTCTTCCTTCAGCTTGTGC+TGG | + | chr1.1:51326731-51326750 | MS.gene89562:CDS | 55.0% | |
| TCGTTCGTCAGCGTAAGCCA+TGG | + | chr1.1:51326822-51326841 | MS.gene89562:CDS | 55.0% | |
| ! | CATACGGAACTTGTTCCCCG+CGG | - | chr1.1:51326609-51326628 | None:intergenic | 55.0% |
| CGCTGACGAACGATGACAGC+TGG | - | chr1.1:51326815-51326834 | None:intergenic | 60.0% | |
| GTCACTGGGTCTACCAGTGG+CGG | + | chr1.1:51326628-51326647 | MS.gene89562:CDS | 60.0% | |
| TTAGGTCGTGGTGGTTCCGC+GGG | + | chr1.1:51326590-51326609 | MS.gene89562:intron | 60.0% | |
| ! | AAGCCATGGCGCCGAAAGGA+CGG | + | chr1.1:51326836-51326855 | MS.gene89562:CDS | 60.0% |
| ACACCGTCCTTTCGGCGCCA+TGG | - | chr1.1:51326842-51326861 | None:intergenic | 65.0% | |
| TAGGTCGTGGTGGTTCCGCG+GGG | + | chr1.1:51326591-51326610 | MS.gene89562:intron | 65.0% | |
| ! | GCGTAAGCCATGGCGCCGAA+AGG | + | chr1.1:51326832-51326851 | MS.gene89562:CDS | 65.0% |
| CAGTTCACCGTCGCCGCCAC+TGG | - | chr1.1:51326644-51326663 | None:intergenic | 70.0% | |
| GGGTCTACCAGTGGCGGCGA+CGG | + | chr1.1:51326634-51326653 | MS.gene89562:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 51326487 | 51328133 | 51326487 | ID=MS.gene89562 |
| chr1.1 | mRNA | 51326487 | 51328133 | 51326487 | ID=MS.gene89562.t1;Parent=MS.gene89562 |
| chr1.1 | exon | 51326487 | 51326499 | 51326487 | ID=MS.gene89562.t1.exon1;Parent=MS.gene89562.t1 |
| chr1.1 | CDS | 51326487 | 51326499 | 51326487 | ID=cds.MS.gene89562.t1;Parent=MS.gene89562.t1 |
| chr1.1 | exon | 51326594 | 51326878 | 51326594 | ID=MS.gene89562.t1.exon2;Parent=MS.gene89562.t1 |
| chr1.1 | CDS | 51326594 | 51326878 | 51326594 | ID=cds.MS.gene89562.t1;Parent=MS.gene89562.t1 |
| chr1.1 | exon | 51327703 | 51327744 | 51327703 | ID=MS.gene89562.t1.exon3;Parent=MS.gene89562.t1 |
| chr1.1 | CDS | 51327703 | 51327744 | 51327703 | ID=cds.MS.gene89562.t1;Parent=MS.gene89562.t1 |
| chr1.1 | exon | 51328051 | 51328133 | 51328051 | ID=MS.gene89562.t1.exon4;Parent=MS.gene89562.t1 |
| chr1.1 | CDS | 51328051 | 51328133 | 51328051 | ID=cds.MS.gene89562.t1;Parent=MS.gene89562.t1 |
| Gene Sequence |
| Protein sequence |
