AlfalfaGEDB | MS.gene062042

M. sativa cultivar XinJiangDaYe / MS.gene062042

KEGG: -
GO: -
PFAM: PF04398.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062042.t1	XP_013463688.1	98.8	164	2	0	1	164	1	164	6.50E-86	326.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062042.t1	B7FGQ9	98.8	164	2	0	1	164	1	164	4.7e-86	326.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene062042	0.854424	1.24E-61	-1.69E-46
MS.gene049159	MS.gene062042	0.854836	9.44E-62	-1.69E-46
MS.gene04918	MS.gene062042	0.815698	8.09E-52	-1.69E-46
MS.gene049254	MS.gene062042	0.857705	1.36E-62	-1.69E-46
MS.gene049350	MS.gene062042	0.808081	3.69E-50	-1.69E-46
MS.gene049404	MS.gene062042	0.855574	5.76E-62	-1.69E-46
MS.gene049435	MS.gene062042	0.808142	3.58E-50	-1.69E-46
MS.gene049452	MS.gene062042	0.836004	1.21E-56	-1.69E-46
MS.gene049499	MS.gene062042	0.817246	3.64E-52	-1.69E-46
MS.gene049501	MS.gene062042	0.841792	3.83E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062042.t1	MTR_2g046150	98.780	164	2	0	1	164	1	164	5.01e-118	330
MS.gene062042.t1	MTR_7g111900	46.479	142	75	1	6	146	2	143	5.66e-38	128
MS.gene062042.t1	MTR_1g084200	43.137	153	86	1	6	157	2	154	1.49e-36	124
MS.gene062042.t1	MTR_7g103200	43.382	136	76	1	6	140	2	137	2.05e-36	123
MS.gene062042.t1	MTR_2g019480	38.129	139	86	0	15	153	16	154	4.71e-32	112
MS.gene062042.t1	MTR_2g091215	40.909	132	78	0	11	142	3	134	9.45e-28	100
MS.gene062042.t1	MTR_2g091210	38.462	130	80	0	11	140	3	132	7.39e-27	98.6
MS.gene062042.t1	MTR_4g122930	36.986	146	85	4	7	147	3	146	5.99e-24	91.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062042.t1	AT4G24130	68.667	150	46	1	1	149	1	150	5.38e-72	214
MS.gene062042.t1	AT1G09310	46.207	145	76	2	7	150	3	146	1.29e-34	119
MS.gene062042.t1	AT1G56580	44.595	148	79	3	7	151	3	150	3.13e-34	118
MS.gene062042.t1	AT5G46230	37.121	132	83	0	9	140	8	139	1.61e-31	110
MS.gene062042.t1	AT1G30020	33.846	130	82	1	7	136	6	131	1.02e-25	96.3
MS.gene062042.t1	AT5G49600	34.694	147	85	4	7	143	1	146	1.38e-20	83.6

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Find 29 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACTTACCAATCCCCAT+AGG	0.653062	2.3:-44607145	None:intergenic
AAGCTCTTCTAAGAGTTGTA+TGG	0.469293	2.3:-44606846	None:intergenic
AATGGCTAGCAACAGCACAA+TGG	0.699467	2.3:+44606763	None:intergenic
AATTGAAGTTACTGCTTATG+TGG	0.459578	2.3:+44607006	MS.gene062042:CDS
ACAAAGACTCTTGTGAGCTA+CGG	0.601286	2.3:+44606983	MS.gene062042:CDS
ACATTCAACAAGATCCTTTA+AGG	0.179628	2.3:-44606891	None:intergenic
AGAGTAAGCAATTGTTTGTT+TGG	0.287883	2.3:+44607062	MS.gene062042:CDS
ATACAACTCTTAGAAGAGCT+TGG	0.448905	2.3:+44606848	MS.gene062042:CDS
ATAGTTGAAATGAGTATTGA+GGG	0.460794	2.3:+44607091	MS.gene062042:CDS
ATGGTAACAAATGAACGTGC+AGG	0.612544	2.3:+44606782	MS.gene062042:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAAGTTACTGCTTATG+TGG	+	chr2.3:44607006-44607025	MS.gene062042:CDS	30.0%
ACATTCAACAAGATCCTTTA+AGG	-	chr2.3:44606894-44606913	None:intergenic	30.0%
AGAGTAAGCAATTGTTTGTT+TGG	+	chr2.3:44607062-44607081	MS.gene062042:CDS	30.0%
CATTCAACAAGATCCTTTAA+GGG	-	chr2.3:44606893-44606912	None:intergenic	30.0%
CCTTCAAAATAATGTTCACT+TGG	-	chr2.3:44606962-44606981	None:intergenic	30.0%
GAGTAAGCAATTGTTTGTTT+GGG	+	chr2.3:44607063-44607082	MS.gene062042:CDS	30.0%
TTAAAGGATCTTGTTGAATG+TGG	+	chr2.3:44606893-44606912	MS.gene062042:CDS	30.0%
TTCAAGATGAAGAAAATGAG+TGG	+	chr2.3:44607034-44607053	MS.gene062042:CDS	30.0%
ATACAACTCTTAGAAGAGCT+TGG	+	chr2.3:44606848-44606867	MS.gene062042:CDS	35.0%
GAAGTTGCAATTGAAGGATA+AGG	+	chr2.3:44607213-44607232	MS.gene062042:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	44606764	44607258	44606764	ID=MS.gene062042
chr2.3	mRNA	44606764	44607258	44606764	ID=MS.gene062042.t1;Parent=MS.gene062042
chr2.3	exon	44606764	44607258	44606764	ID=MS.gene062042.t1.exon1;Parent=MS.gene062042.t1
chr2.3	CDS	44606764	44607258	44606764	ID=cds.MS.gene062042.t1;Parent=MS.gene062042.t1

Gene Sequence

>MS.gene062042

ATGGCTAGCAACAGCACAATGGTAACAAATGAACGTGCAGGTGCAGAAATAGTGTATGGTTCTGAAGAATGTTTCAACCATTCCATACAACTCTTAGAAGAGCTTGGATTTCCCAAAGGTGTTCTTCCCTTAAAGGATCTTGTTGAATGTGGAAGAGTTAGAGAAACTGGTTTTGTTTGGATGAAACAAAAGGCACCAAGTGAACATTATTTTGAAGGTACAAAGACTCTTGTGAGCTACGGAATTGAAGTTACTGCTTATGTGGAGAAATTCAAGATGAAGAAAATGAGTGGAATTAAGAGTAAGCAATTGTTTGTTTGGGTGCCTATAGTTGAAATGAGTATTGAGGGTTTTAATGGAAAGAAGATGTATTTTAAGACTCCTATGGGGATTGGTAAGTCTTTTCATGTTACTTCATTTATGAGTGTTGAGGAAAAAGAAAAGTATGAGAAGTTGCAATTGAAGGATAAGGAGGTTGAGATCAAAGAAAATTAA

Protein sequence

>MS.gene062042.t1

MASNSTMVTNERAGAEIVYGSEECFNHSIQLLEELGFPKGVLPLKDLVECGRVRETGFVWMKQKAPSEHYFEGTKTLVSYGIEVTAYVEKFKMKKMSGIKSKQLFVWVPIVEMSIEGFNGKKMYFKTPMGIGKSFHVTSFMSVEEKEKYEKLQLKDKEVEIKEN