Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52671.t1 | XP_003625273.1 | 73.8 | 320 | 76 | 3 | 5 | 321 | 24 | 338 | 1.10E-116 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52671.t1 | G7KVE9 | 73.8 | 320 | 76 | 3 | 5 | 321 | 24 | 338 | 7.6e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene52671 | 0.848975 | 4.35E-60 | -1.69E-46 |
| MS.gene049272 | MS.gene52671 | 0.819449 | 1.15E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene52671 | 0.811145 | 8.11E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene52671 | 0.806779 | 6.97E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene52671 | 0.81094 | 8.98E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene52671 | 0.809496 | 1.84E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene52671 | 0.84876 | 4.99E-60 | -1.69E-46 |
| MS.gene050355 | MS.gene52671 | 0.823893 | 1.08E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene52671 | 0.821989 | 3.01E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene52671 | 0.815558 | 8.69E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene52671 | 0.816008 | 6.90E-52 | -1.69E-46 |
| MS.gene050562 | MS.gene52671 | 0.809512 | 1.82E-50 | -1.69E-46 |
| MS.gene050657 | MS.gene52671 | 0.817805 | 2.73E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene52671 | 0.815137 | 1.08E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene52671 | 0.814684 | 1.36E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene52671 | 0.826622 | 2.45E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene52671 | 0.831393 | 1.71E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene52671 | 0.825248 | 5.20E-54 | -1.69E-46 |
| MS.gene050962 | MS.gene52671 | 0.821338 | 4.26E-53 | -1.69E-46 |
| MS.gene051147 | MS.gene52671 | 0.800013 | 1.76E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene52671 | 0.820271 | 7.49E-53 | -1.69E-46 |
| MS.gene051247 | MS.gene52671 | 0.817316 | 3.51E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene52671 | 0.836019 | 1.20E-56 | -1.69E-46 |
| MS.gene051594 | MS.gene52671 | 0.807711 | 4.42E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene52671 | 0.811068 | 8.42E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene52671 | 0.813419 | 2.58E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene52671 | 0.81945 | 1.15E-52 | -1.69E-46 |
| MS.gene052488 | MS.gene52671 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene052493 | MS.gene52671 | 0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene52671 | 0.831189 | 1.92E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene52671 | 0.842957 | 1.88E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene52671 | 0.848438 | 6.13E-60 | -1.69E-46 |
| MS.gene052586 | MS.gene52671 | 0.829369 | 5.35E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene52671 | 0.802854 | 4.60E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene52671 | 0.804762 | 1.85E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene52671 | 0.806968 | 6.36E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene52671 | 0.80596 | 1.04E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene52671 | 0.803991 | 2.68E-49 | -1.69E-46 |
| MS.gene053647 | MS.gene52671 | 0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene053974 | MS.gene52671 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene52671 | 0.800905 | 1.16E-48 | -1.69E-46 |
| MS.gene05414 | MS.gene52671 | 0.841259 | 5.30E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene52671 | 0.850853 | 1.30E-60 | -1.69E-46 |
| MS.gene054236 | MS.gene52671 | 0.817965 | 2.51E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene52671 | 0.83438 | 3.10E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene52671 | -0.837752 | 4.32E-57 | -1.69E-46 |
| MS.gene054405 | MS.gene52671 | 0.821619 | 3.67E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene52671 | 0.80098 | 1.12E-48 | -1.69E-46 |
| MS.gene054468 | MS.gene52671 | 0.82609 | 3.28E-54 | -1.69E-46 |
| MS.gene054576 | MS.gene52671 | 0.81326 | 2.80E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene52671 | 0.827532 | 1.49E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene52671 | 0.80578 | 1.13E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene52671 | 0.807955 | 3.92E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene52671 | 0.804834 | 1.79E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene52671 | 0.834296 | 3.25E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene52671 | 0.805536 | 1.27E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene52671 | 0.804004 | 2.66E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene52671 | 0.843872 | 1.07E-58 | -1.69E-46 |
| MS.gene056506 | MS.gene52671 | 0.837751 | 4.32E-57 | -1.69E-46 |
| MS.gene05690 | MS.gene52671 | 0.805649 | 1.21E-49 | -1.69E-46 |
| MS.gene057021 | MS.gene52671 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene52671 | 0.832147 | 1.12E-55 | -1.69E-46 |
| MS.gene057027 | MS.gene52671 | 0.830698 | 2.54E-55 | -1.69E-46 |
| MS.gene057414 | MS.gene52671 | 0.820532 | 6.53E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene52671 | 0.813034 | 3.14E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene52671 | 0.843355 | 1.47E-58 | -1.69E-46 |
| MS.gene058294 | MS.gene52671 | 0.805848 | 1.10E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene52671 | 0.84327 | 1.55E-58 | -1.69E-46 |
| MS.gene058979 | MS.gene52671 | 0.833626 | 4.79E-56 | -1.69E-46 |
| MS.gene059272 | MS.gene52671 | 0.859278 | 4.62E-63 | -1.69E-46 |
| MS.gene059459 | MS.gene52671 | 0.808457 | 3.07E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene52671 | 0.828545 | 8.47E-55 | -1.69E-46 |
| MS.gene059584 | MS.gene52671 | 0.810525 | 1.10E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene52671 | 0.828053 | 1.11E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene52671 | 0.814573 | 1.44E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene52671 | 0.822669 | 2.09E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene52671 | 0.839112 | 1.93E-57 | -1.69E-46 |
| MS.gene060373 | MS.gene52671 | 0.807616 | 4.63E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene52671 | 0.825189 | 5.37E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene52671 | 0.852845 | 3.53E-61 | -1.69E-46 |
| MS.gene060634 | MS.gene52671 | -0.80357 | 3.27E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene52671 | 0.819801 | 9.60E-53 | -1.69E-46 |
| MS.gene060879 | MS.gene52671 | 0.80569 | 1.18E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene52671 | -0.831938 | 1.26E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52671.t1 | MTR_7g093350 | 84.688 | 320 | 41 | 3 | 5 | 321 | 24 | 338 | 0.0 | 540 |
| MS.gene52671.t1 | MTR_7g093360 | 85.093 | 322 | 40 | 4 | 5 | 321 | 24 | 342 | 7.72e-180 | 500 |
| MS.gene52671.t1 | MTR_7g093350 | 83.265 | 245 | 33 | 3 | 80 | 321 | 8 | 247 | 7.07e-139 | 393 |
| MS.gene52671.t1 | MTR_7g093360 | 86.522 | 230 | 27 | 2 | 93 | 321 | 26 | 252 | 2.09e-130 | 372 |
| MS.gene52671.t1 | MTR_1g054175 | 50.769 | 325 | 126 | 11 | 7 | 321 | 1 | 301 | 3.69e-79 | 243 |
| MS.gene52671.t1 | MTR_1g054175 | 53.815 | 249 | 91 | 8 | 81 | 321 | 14 | 246 | 4.97e-65 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52671.t1 | AT2G42040 | 50.833 | 120 | 19 | 2 | 191 | 310 | 163 | 242 | 8.13e-22 | 93.2 |
Find 73 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGAAAAGAAAACCATTTA+TGG | 0.110417 | 7.2:+16057473 | MS.gene52671:CDS |
| CCGATCTATGACCAGCTTAT+TGG | 0.190544 | 7.2:+16057580 | MS.gene52671:CDS |
| CTTATCATCATTCCCATAAA+TGG | 0.191015 | 7.2:-16057486 | None:intergenic |
| TCACTTTGTGAGCATCATTT+AGG | 0.197238 | 7.2:+16057326 | MS.gene52671:CDS |
| TAAAGAAGAAGGTGACAAAA+AGG | 0.274515 | 7.2:+16057219 | MS.gene52671:CDS |
| CACTTTGTGAGCATCATTTA+GGG | 0.276622 | 7.2:+16057327 | MS.gene52671:CDS |
| TTGCAGGATGAGAAAGTTAG+AGG | 0.316905 | 7.2:+16056435 | MS.gene52671:intron |
| TCAAGGTGCAGTCGTGTTAA+TGG | 0.325264 | 7.2:+16057263 | MS.gene52671:CDS |
| CGATCTATGACCAGCTTATT+GGG | 0.331227 | 7.2:+16057581 | MS.gene52671:CDS |
| GTTAGAAATAGATCTAATAT+TGG | 0.340191 | 7.2:+16057377 | MS.gene52671:CDS |
| TTGAAAAGAAAACCATTTAT+GGG | 0.365020 | 7.2:+16057474 | MS.gene52671:CDS |
| GATGAATAAGAAGTGTTCTC+TGG | 0.367764 | 7.2:+16057154 | MS.gene52671:CDS |
| AGAACACTTCTTATTCATCT+TGG | 0.397343 | 7.2:-16057150 | None:intergenic |
| ATAACAAAAGTAATCATATC+AGG | 0.406726 | 7.2:+16056478 | MS.gene52671:CDS |
| GATTGTGAAGAACAAGGTTT+TGG | 0.415228 | 7.2:-16056018 | None:intergenic |
| GCACAACAAGCTAGATCCTT+TGG | 0.428377 | 7.2:+16056173 | MS.gene52671:CDS |
| TGTTTCAGCTTGTTTGAGCT+TGG | 0.439833 | 7.2:+16056050 | MS.gene52671:CDS |
| AACGGCTATGATTATCCATC+TGG | 0.441893 | 7.2:+16056123 | MS.gene52671:CDS |
| TGTTGTCAACAAACACTTGT+TGG | 0.452218 | 7.2:+16057299 | MS.gene52671:CDS |
| ACTTAGCAATGGAGACATCT+TGG | 0.459465 | 7.2:+16056869 | MS.gene52671:intron |
| ATCAAACACTCCCACTGATC+GGG | 0.459647 | 7.2:+16056091 | MS.gene52671:CDS |
| AAGGTTCGAGAGTAATGGTA+TGG | 0.464503 | 7.2:+16057088 | MS.gene52671:CDS |
| ATGAATAAGAAGTGTTCTCT+GGG | 0.474459 | 7.2:+16057155 | MS.gene52671:CDS |
| TTATGGGAATGATGATAAGT+TGG | 0.486486 | 7.2:+16057490 | MS.gene52671:CDS |
| CAATAAGCTGGTCATAGATC+GGG | 0.487616 | 7.2:-16057579 | None:intergenic |
| TTGTCTCTTACGGATCCTCA+TGG | 0.491763 | 7.2:-16055899 | None:intergenic |
| AAGCTATTCCCATAAAGAAA+AGG | 0.492126 | 7.2:+16057060 | MS.gene52671:CDS |
| GTCTGTCTGTCCCAATAAGC+TGG | 0.498585 | 7.2:-16057591 | None:intergenic |
| AAAAGTGAATATAAAGAAGA+AGG | 0.502625 | 7.2:+16057208 | MS.gene52671:CDS |
| CCAATAAGCTGGTCATAGAT+CGG | 0.502747 | 7.2:-16057580 | None:intergenic |
| TGTTCAGAAGAGCTTGATGA+TGG | 0.502827 | 7.2:-16056909 | None:intergenic |
| TGCAGTCGTGTTAATGGAAG+AGG | 0.503807 | 7.2:+16057269 | MS.gene52671:CDS |
| CCATCTGGTGTTGAGGAAAG+TGG | 0.511043 | 7.2:+16056138 | MS.gene52671:CDS |
| TGTTTAGTTTCCCGATCAGT+GGG | 0.515803 | 7.2:-16056101 | None:intergenic |
| TTGTTTAGTTTCCCGATCAG+TGG | 0.522558 | 7.2:-16056102 | None:intergenic |
| CATCTGGTGTTGAGGAAAGT+GGG | 0.525658 | 7.2:+16056139 | MS.gene52671:CDS |
| GTGCACTGATGGAAGGTTCA+AGG | 0.526939 | 7.2:+16057246 | MS.gene52671:CDS |
| CGGTGACTGGTTCATCATGT+GGG | 0.530912 | 7.2:-16055971 | None:intergenic |
| AGAGGAGAAAAGAAAGAGAG+TGG | 0.538426 | 7.2:+16056453 | MS.gene52671:CDS |
| GATCAAACACTCCCACTGAT+CGG | 0.538484 | 7.2:+16056090 | MS.gene52671:CDS |
| TGTGAGCATCATTTAGGGAA+AGG | 0.539369 | 7.2:+16057332 | MS.gene52671:CDS |
| GCAAAGAAAAGAATGAAGCT+TGG | 0.541339 | 7.2:+16057545 | MS.gene52671:CDS |
| AAAGGAAGGTTCGAGAGTAA+TGG | 0.542768 | 7.2:+16057083 | MS.gene52671:CDS |
| GTTGCACCACCATCGGTGAC+TGG | 0.543665 | 7.2:-16055984 | None:intergenic |
| TCGGTGACTGGTTCATCATG+TGG | 0.550743 | 7.2:-16055972 | None:intergenic |
| AGCATCATTTAGGGAAAGGA+AGG | 0.554136 | 7.2:+16057336 | MS.gene52671:CDS |
| AGTGGGAGTGTTTGATCAGA+CGG | 0.568378 | 7.2:-16056084 | None:intergenic |
| CCACTTTCCTCAACACCAGA+TGG | 0.569127 | 7.2:-16056138 | None:intergenic |
| GAAAAGAATGAAGCTTGGAA+TGG | 0.573593 | 7.2:+16057550 | MS.gene52671:CDS |
| TAATGATAGTAAGAAAGTGA+AGG | 0.575995 | 7.2:+16057115 | MS.gene52671:CDS |
| TCACCGATGGTGGTGCAACT+TGG | 0.576709 | 7.2:+16055988 | MS.gene52671:CDS |
| TGTCTCTTACGGATCCTCAT+GGG | 0.584685 | 7.2:-16055898 | None:intergenic |
| TGATTATCCATCTGGTGTTG+AGG | 0.588719 | 7.2:+16056131 | MS.gene52671:CDS |
| CCATAAAGAAAAGGAAAGGA+AGG | 0.590406 | 7.2:+16057069 | MS.gene52671:CDS |
| TCACCAAGTTGCACCACCAT+CGG | 0.594191 | 7.2:-16055991 | None:intergenic |
| ATTCCCATAAAGAAAAGGAA+AGG | 0.595849 | 7.2:+16057065 | MS.gene52671:CDS |
| GTGTTAATGGAAGAGGATGG+AGG | 0.605411 | 7.2:+16057276 | MS.gene52671:CDS |
| AGGGGAAGTGCACTGATGGA+AGG | 0.609317 | 7.2:+16057239 | MS.gene52671:CDS |
| TCATCAAGCTCTTCTGAACA+AGG | 0.621692 | 7.2:+16056912 | MS.gene52671:CDS |
| CATGATGAACCAGTCACCGA+TGG | 0.633305 | 7.2:+16055975 | MS.gene52671:CDS |
| ATCTGGTGTTGAGGAAAGTG+GGG | 0.633423 | 7.2:+16056140 | MS.gene52671:CDS |
| TGTTGTGATTGTGAAGAACA+AGG | 0.634928 | 7.2:-16056024 | None:intergenic |
| GTAGATGGGAGATGGTGTGA+GGG | 0.636074 | 7.2:+16057032 | MS.gene52671:intron |
| GTTTATATGTAGATGGGAGA+TGG | 0.637137 | 7.2:+16057024 | MS.gene52671:intron |
| TGTAGATGGGAGATGGTGTG+AGG | 0.639136 | 7.2:+16057031 | MS.gene52671:intron |
| GATGGTGGTGCAACTTGGTG+AGG | 0.640589 | 7.2:+16055993 | MS.gene52671:CDS |
| GGTGACTGGTTCATCATGTG+GGG | 0.651550 | 7.2:-16055970 | None:intergenic |
| ATGGTGGTGCAACTTGGTGA+GGG | 0.654742 | 7.2:+16055994 | MS.gene52671:CDS |
| ATTGGGACAGACAGACAACA+AGG | 0.664244 | 7.2:+16057598 | MS.gene52671:CDS |
| GTCGTGTTAATGGAAGAGGA+TGG | 0.680449 | 7.2:+16057273 | MS.gene52671:CDS |
| CTGATCGGGAAACTAAACAA+CGG | 0.695161 | 7.2:+16056105 | MS.gene52671:CDS |
| GATGAACCAGTCACCGATGG+TGG | 0.720438 | 7.2:+16055978 | MS.gene52671:CDS |
| TGAATAAGAAGTGTTCTCTG+GGG | 0.734621 | 7.2:+16057156 | MS.gene52671:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAATAATAAAATCAAAA+TGG | - | chr7.2:16056212-16056231 | None:intergenic | 10.0% |
| !! | ATATATATTGTTTATGAGAA+TGG | + | chr7.2:16056978-16056997 | MS.gene52671:intron | 15.0% |
| !! | ATTAAATAAATTTGACATCA+AGG | - | chr7.2:16056322-16056341 | None:intergenic | 15.0% |
| !! | TTAAATAAATTTGACATCAA+GGG | - | chr7.2:16056321-16056340 | None:intergenic | 15.0% |
| !! | TTATATGTTTATATGTAGAT+GGG | + | chr7.2:16057018-16057037 | MS.gene52671:intron | 15.0% |
| !! | TTTATATGTTTATATGTAGA+TGG | + | chr7.2:16057017-16057036 | MS.gene52671:intron | 15.0% |
| !! | TTTATTCAAAAATATAGCAA+TGG | + | chr7.2:16056601-16056620 | MS.gene52671:intron | 15.0% |
| !!! | AACTAATACATTTTTCTTTT+AGG | - | chr7.2:16056579-16056598 | None:intergenic | 15.0% |
| !! | AAAAGTGAATATAAAGAAGA+AGG | + | chr7.2:16057208-16057227 | MS.gene52671:CDS | 20.0% |
| !! | ATAACAAAAGTAATCATATC+AGG | + | chr7.2:16056478-16056497 | MS.gene52671:CDS | 20.0% |
| !! | GTTAGAAATAGATCTAATAT+TGG | + | chr7.2:16057377-16057396 | MS.gene52671:CDS | 20.0% |
| !! | TAAATAAATTTGACATCAAG+GGG | - | chr7.2:16056320-16056339 | None:intergenic | 20.0% |
| !! | TTGAAAAGAAAACCATTTAT+GGG | + | chr7.2:16057474-16057493 | MS.gene52671:CDS | 20.0% |
| !!! | ATCTTTCTTATCTCTAAAAT+GGG | + | chr7.2:16056668-16056687 | MS.gene52671:intron | 20.0% |
| !!! | ATTAACGAAATTTAGAACAT+GGG | - | chr7.2:16056821-16056840 | None:intergenic | 20.0% |
| !!! | ATTTTAGAGATAAGAAAGAT+GGG | - | chr7.2:16056668-16056687 | None:intergenic | 20.0% |
| !!! | TATATTGTATCCATGTATTT+TGG | + | chr7.2:16056396-16056415 | MS.gene52671:intron | 20.0% |
| !!! | TGTTTAATTGTTTCTGATTT+GGG | + | chr7.2:16056253-16056272 | MS.gene52671:intron | 20.0% |
| !!! | TTGTTTAATTGTTTCTGATT+TGG | + | chr7.2:16056252-16056271 | MS.gene52671:intron | 20.0% |
| ! | CTTGAAAAGAAAACCATTTA+TGG | + | chr7.2:16057473-16057492 | MS.gene52671:CDS | 25.0% |
| ! | TAATGATAGTAAGAAAGTGA+AGG | + | chr7.2:16057115-16057134 | MS.gene52671:CDS | 25.0% |
| !! | CATCTTTCTTATCTCTAAAA+TGG | + | chr7.2:16056667-16056686 | MS.gene52671:intron | 25.0% |
| !! | CATTAACGAAATTTAGAACA+TGG | - | chr7.2:16056822-16056841 | None:intergenic | 25.0% |
| !! | CTTTTCTTTGCAATTATTAG+TGG | - | chr7.2:16057536-16057555 | None:intergenic | 25.0% |
| !!! | ACATTTTTCTTTTAGGAATC+TGG | - | chr7.2:16056572-16056591 | None:intergenic | 25.0% |
| !!! | ATGTGATTTTTGGTCTTTTT+GGG | + | chr7.2:16056843-16056862 | MS.gene52671:intron | 25.0% |
| !!! | CATTTTAGAGATAAGAAAGA+TGG | - | chr7.2:16056669-16056688 | None:intergenic | 25.0% |
| AAAGAAGAAGGTGACAAAAA+GGG | + | chr7.2:16057220-16057239 | MS.gene52671:CDS | 30.0% | |
| AAATAATTTCACACCCAGAA+AGG | + | chr7.2:16056368-16056387 | MS.gene52671:intron | 30.0% | |
| AAGCTATTCCCATAAAGAAA+AGG | + | chr7.2:16057060-16057079 | MS.gene52671:CDS | 30.0% | |
| AATAATTTCACACCCAGAAA+GGG | + | chr7.2:16056369-16056388 | MS.gene52671:intron | 30.0% | |
| ACAATATAAGAACCCTTTCT+GGG | - | chr7.2:16056384-16056403 | None:intergenic | 30.0% | |
| AGAAAAGAACTTGTCTCTTA+CGG | - | chr7.2:16055912-16055931 | None:intergenic | 30.0% | |
| AGAACACTTCTTATTCATCT+TGG | - | chr7.2:16057153-16057172 | None:intergenic | 30.0% | |
| ATCAACCATACCAAAATACA+TGG | - | chr7.2:16056409-16056428 | None:intergenic | 30.0% | |
| ATTCCCATAAAGAAAAGGAA+AGG | + | chr7.2:16057065-16057084 | MS.gene52671:CDS | 30.0% | |
| CATTATTGTTGAGGAACAAA+GGG | - | chr7.2:16056755-16056774 | None:intergenic | 30.0% | |
| CTTATCATCATTCCCATAAA+TGG | - | chr7.2:16057489-16057508 | None:intergenic | 30.0% | |
| TAAAGAAGAAGGTGACAAAA+AGG | + | chr7.2:16057219-16057238 | MS.gene52671:CDS | 30.0% | |
| TACAATATAAGAACCCTTTC+TGG | - | chr7.2:16056385-16056404 | None:intergenic | 30.0% | |
| TTATGGGAATGATGATAAGT+TGG | + | chr7.2:16057490-16057509 | MS.gene52671:CDS | 30.0% | |
| ! | CTTCCTTTCCTTTTCTTTAT+GGG | - | chr7.2:16057071-16057090 | None:intergenic | 30.0% |
| ! | TAAGAAAGATGGGCTTAATT+TGG | - | chr7.2:16056658-16056677 | None:intergenic | 30.0% |
| ! | TCGTTAATGCATGTGATTTT+TGG | + | chr7.2:16056833-16056852 | MS.gene52671:intron | 30.0% |
| !! | ATGAATAAGAAGTGTTCTCT+GGG | + | chr7.2:16057155-16057174 | MS.gene52671:CDS | 30.0% |
| !!! | CATGTGATTTTTGGTCTTTT+TGG | + | chr7.2:16056842-16056861 | MS.gene52671:intron | 30.0% |
| !!! | TATGGTTGATTTGATTTTGC+AGG | + | chr7.2:16056419-16056438 | MS.gene52671:intron | 30.0% |
| !!! | TGGTTTTTTTGACTTACCAA+AGG | - | chr7.2:16056192-16056211 | None:intergenic | 30.0% |
| !!! | TGTATCCATGTATTTTGGTA+TGG | + | chr7.2:16056401-16056420 | MS.gene52671:intron | 30.0% |
| AACAAAGGGCAGTATATAGA+TGG | - | chr7.2:16056741-16056760 | None:intergenic | 35.0% | |
| AAGAAGAAGGTGACAAAAAG+GGG | + | chr7.2:16057221-16057240 | MS.gene52671:CDS | 35.0% | |
| ACAAAGGGCAGTATATAGAT+GGG | - | chr7.2:16056740-16056759 | None:intergenic | 35.0% | |
| AGTGCACTACTAGTTATAAC+TGG | + | chr7.2:16056712-16056731 | MS.gene52671:intron | 35.0% | |
| CACTTTGTGAGCATCATTTA+GGG | + | chr7.2:16057327-16057346 | MS.gene52671:CDS | 35.0% | |
| CCATAAAGAAAAGGAAAGGA+AGG | + | chr7.2:16057069-16057088 | MS.gene52671:CDS | 35.0% | |
| GAAAAGAATGAAGCTTGGAA+TGG | + | chr7.2:16057550-16057569 | MS.gene52671:CDS | 35.0% | |
| GCAAAGAAAAGAATGAAGCT+TGG | + | chr7.2:16057545-16057564 | MS.gene52671:CDS | 35.0% | |
| GCATTATTGTTGAGGAACAA+AGG | - | chr7.2:16056756-16056775 | None:intergenic | 35.0% | |
| GTTTATATGTAGATGGGAGA+TGG | + | chr7.2:16057024-16057043 | MS.gene52671:intron | 35.0% | |
| TCACTTTGTGAGCATCATTT+AGG | + | chr7.2:16057326-16057345 | MS.gene52671:CDS | 35.0% | |
| TGTTGTCAACAAACACTTGT+TGG | + | chr7.2:16057299-16057318 | MS.gene52671:CDS | 35.0% | |
| TGTTGTGATTGTGAAGAACA+AGG | - | chr7.2:16056027-16056046 | None:intergenic | 35.0% | |
| ! | CCTTCCTTTCCTTTTCTTTA+TGG | - | chr7.2:16057072-16057091 | None:intergenic | 35.0% |
| ! | GATTGTGAAGAACAAGGTTT+TGG | - | chr7.2:16056021-16056040 | None:intergenic | 35.0% |
| !! | GATGAATAAGAAGTGTTCTC+TGG | + | chr7.2:16057154-16057173 | MS.gene52671:CDS | 35.0% |
| !! | TGAATAAGAAGTGTTCTCTG+GGG | + | chr7.2:16057156-16057175 | MS.gene52671:CDS | 35.0% |
| !!! | TTTTTGGGTCTACTTAGCAA+TGG | + | chr7.2:16056858-16056877 | MS.gene52671:intron | 35.0% |
| AAAGGAAGGTTCGAGAGTAA+TGG | + | chr7.2:16057083-16057102 | MS.gene52671:CDS | 40.0% | |
| AACGGCTATGATTATCCATC+TGG | + | chr7.2:16056123-16056142 | MS.gene52671:CDS | 40.0% | |
| AAGGTTCGAGAGTAATGGTA+TGG | + | chr7.2:16057088-16057107 | MS.gene52671:CDS | 40.0% | |
| ACTTAGCAATGGAGACATCT+TGG | + | chr7.2:16056869-16056888 | MS.gene52671:intron | 40.0% | |
| AGAGGAGAAAAGAAAGAGAG+TGG | + | chr7.2:16056453-16056472 | MS.gene52671:CDS | 40.0% | |
| AGCATCATTTAGGGAAAGGA+AGG | + | chr7.2:16057336-16057355 | MS.gene52671:CDS | 40.0% | |
| AGTGCACTTCAAGTGCAAAA+TGG | - | chr7.2:16056700-16056719 | None:intergenic | 40.0% | |
| CAAAGGGCAGTATATAGATG+GGG | - | chr7.2:16056739-16056758 | None:intergenic | 40.0% | |
| CAATAAGCTGGTCATAGATC+GGG | - | chr7.2:16057582-16057601 | None:intergenic | 40.0% | |
| CCAATAAGCTGGTCATAGAT+CGG | - | chr7.2:16057583-16057602 | None:intergenic | 40.0% | |
| CGATCTATGACCAGCTTATT+GGG | + | chr7.2:16057581-16057600 | MS.gene52671:CDS | 40.0% | |
| CTGATCGGGAAACTAAACAA+CGG | + | chr7.2:16056105-16056124 | MS.gene52671:CDS | 40.0% | |
| TCATCAAGCTCTTCTGAACA+AGG | + | chr7.2:16056912-16056931 | MS.gene52671:CDS | 40.0% | |
| TGAGTGCAGCATTATTGTTG+AGG | - | chr7.2:16056764-16056783 | None:intergenic | 40.0% | |
| TGTGAGCATCATTTAGGGAA+AGG | + | chr7.2:16057332-16057351 | MS.gene52671:CDS | 40.0% | |
| TGTTCAGAAGAGCTTGATGA+TGG | - | chr7.2:16056912-16056931 | None:intergenic | 40.0% | |
| TTGCAGGATGAGAAAGTTAG+AGG | + | chr7.2:16056435-16056454 | MS.gene52671:intron | 40.0% | |
| TTTGTCCAATCTCTTGCAAG+TGG | + | chr7.2:16056291-16056310 | MS.gene52671:intron | 40.0% | |
| ! | TGATTATCCATCTGGTGTTG+AGG | + | chr7.2:16056131-16056150 | MS.gene52671:CDS | 40.0% |
| ! | TGTTTAGTTTCCCGATCAGT+GGG | - | chr7.2:16056104-16056123 | None:intergenic | 40.0% |
| ! | TGTTTCAGCTTGTTTGAGCT+TGG | + | chr7.2:16056050-16056069 | MS.gene52671:CDS | 40.0% |
| ! | TTGTTTAGTTTCCCGATCAG+TGG | - | chr7.2:16056105-16056124 | None:intergenic | 40.0% |
| ATCAAACACTCCCACTGATC+GGG | + | chr7.2:16056091-16056110 | MS.gene52671:CDS | 45.0% | |
| ATTGGGACAGACAGACAACA+AGG | + | chr7.2:16057598-16057617 | MS.gene52671:CDS | 45.0% | |
| CCGATCTATGACCAGCTTAT+TGG | + | chr7.2:16057580-16057599 | MS.gene52671:CDS | 45.0% | |
| GATCAAACACTCCCACTGAT+CGG | + | chr7.2:16056090-16056109 | MS.gene52671:CDS | 45.0% | |
| GCACAACAAGCTAGATCCTT+TGG | + | chr7.2:16056173-16056192 | MS.gene52671:CDS | 45.0% | |
| GGTAACCACTTGCAAGAGAT+TGG | - | chr7.2:16056299-16056318 | None:intergenic | 45.0% | |
| GTCGTGTTAATGGAAGAGGA+TGG | + | chr7.2:16057273-16057292 | MS.gene52671:CDS | 45.0% | |
| GTGTTAATGGAAGAGGATGG+AGG | + | chr7.2:16057276-16057295 | MS.gene52671:CDS | 45.0% | |
| TCAAGGTGCAGTCGTGTTAA+TGG | + | chr7.2:16057263-16057282 | MS.gene52671:CDS | 45.0% | |
| TGCAGTCGTGTTAATGGAAG+AGG | + | chr7.2:16057269-16057288 | MS.gene52671:CDS | 45.0% | |
| ! | AAAAAGGGGAAGTGCACTGA+TGG | + | chr7.2:16057235-16057254 | MS.gene52671:CDS | 45.0% |
| ! | ATCTGGTGTTGAGGAAAGTG+GGG | + | chr7.2:16056140-16056159 | MS.gene52671:CDS | 45.0% |
| ! | CATCTGGTGTTGAGGAAAGT+GGG | + | chr7.2:16056139-16056158 | MS.gene52671:CDS | 45.0% |
| !! | AGTGGGAGTGTTTGATCAGA+CGG | - | chr7.2:16056087-16056106 | None:intergenic | 45.0% |
| !! | TATATATATATATATATACA+TGG | - | chr7.2:16056963-16056982 | None:intergenic | 5.0% |
| CATGATGAACCAGTCACCGA+TGG | + | chr7.2:16055975-16055994 | MS.gene52671:CDS | 50.0% | |
| CCACTTTCCTCAACACCAGA+TGG | - | chr7.2:16056141-16056160 | None:intergenic | 50.0% | |
| GTAGATGGGAGATGGTGTGA+GGG | + | chr7.2:16057032-16057051 | MS.gene52671:intron | 50.0% | |
| GTCTGTCTGTCCCAATAAGC+TGG | - | chr7.2:16057594-16057613 | None:intergenic | 50.0% | |
| TCACCAAGTTGCACCACCAT+CGG | - | chr7.2:16055994-16056013 | None:intergenic | 50.0% | |
| TGGGGATCTGAGAGATGCAA+AGG | - | chr7.2:16055955-16055974 | None:intergenic | 50.0% | |
| TGTAGATGGGAGATGGTGTG+AGG | + | chr7.2:16057031-16057050 | MS.gene52671:intron | 50.0% | |
| ! | ATGGTGGTGCAACTTGGTGA+GGG | + | chr7.2:16055994-16056013 | MS.gene52671:CDS | 50.0% |
| ! | CCATCTGGTGTTGAGGAAAG+TGG | + | chr7.2:16056138-16056157 | MS.gene52671:CDS | 50.0% |
| ! | CGGTGACTGGTTCATCATGT+GGG | - | chr7.2:16055974-16055993 | None:intergenic | 50.0% |
| ! | GGTGACTGGTTCATCATGTG+GGG | - | chr7.2:16055973-16055992 | None:intergenic | 50.0% |
| ! | GTGCACTGATGGAAGGTTCA+AGG | + | chr7.2:16057246-16057265 | MS.gene52671:CDS | 50.0% |
| ! | TCGGTGACTGGTTCATCATG+TGG | - | chr7.2:16055975-16055994 | None:intergenic | 50.0% |
| GATGAACCAGTCACCGATGG+TGG | + | chr7.2:16055978-16055997 | MS.gene52671:CDS | 55.0% | |
| ! | AGGGGAAGTGCACTGATGGA+AGG | + | chr7.2:16057239-16057258 | MS.gene52671:CDS | 55.0% |
| ! | GATGGTGGTGCAACTTGGTG+AGG | + | chr7.2:16055993-16056012 | MS.gene52671:CDS | 55.0% |
| ! | TCACCGATGGTGGTGCAACT+TGG | + | chr7.2:16055988-16056007 | MS.gene52671:CDS | 55.0% |
| GTTGCACCACCATCGGTGAC+TGG | - | chr7.2:16055987-16056006 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 16055901 | 16057646 | 16055901 | ID=MS.gene52671 |
| chr7.2 | mRNA | 16055901 | 16057646 | 16055901 | ID=MS.gene52671.t1;Parent=MS.gene52671 |
| chr7.2 | exon | 16055901 | 16055910 | 16055901 | ID=MS.gene52671.t1.exon1;Parent=MS.gene52671.t1 |
| chr7.2 | CDS | 16055901 | 16055910 | 16055901 | ID=cds.MS.gene52671.t1;Parent=MS.gene52671.t1 |
| chr7.2 | exon | 16055968 | 16056194 | 16055968 | ID=MS.gene52671.t1.exon2;Parent=MS.gene52671.t1 |
| chr7.2 | CDS | 16055968 | 16056194 | 16055968 | ID=cds.MS.gene52671.t1;Parent=MS.gene52671.t1 |
| chr7.2 | exon | 16056441 | 16056499 | 16056441 | ID=MS.gene52671.t1.exon3;Parent=MS.gene52671.t1 |
| chr7.2 | CDS | 16056441 | 16056499 | 16056441 | ID=cds.MS.gene52671.t1;Parent=MS.gene52671.t1 |
| chr7.2 | exon | 16056875 | 16056933 | 16056875 | ID=MS.gene52671.t1.exon4;Parent=MS.gene52671.t1 |
| chr7.2 | CDS | 16056875 | 16056933 | 16056875 | ID=cds.MS.gene52671.t1;Parent=MS.gene52671.t1 |
| chr7.2 | exon | 16057036 | 16057646 | 16057036 | ID=MS.gene52671.t1.exon5;Parent=MS.gene52671.t1 |
| chr7.2 | CDS | 16057036 | 16057646 | 16057036 | ID=cds.MS.gene52671.t1;Parent=MS.gene52671.t1 |
| Gene Sequence |
| Protein sequence |
