AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072819


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072819.t1 MTR_5g010860 79.412 68 14 0 95 162 1 68 1.25e-29 108
MS.gene072819.t1 MTR_6g043130 75.610 41 10 0 64 104 13 53 1.23e-14 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072819.t1 AT2G02148 62.411 141 47 2 28 162 94 234 8.45e-51 169
MS.gene072819.t1 AT2G02148 62.411 141 47 2 28 162 94 234 9.16e-51 169
MS.gene072819.t1 AT2G02148 62.411 141 47 2 28 162 94 234 9.16e-51 169
MS.gene072819.t1 AT2G02148 62.411 141 47 2 28 162 94 234 9.16e-51 169
MS.gene072819.t1 AT2G02148 62.411 141 47 2 28 162 94 234 9.16e-51 169

Find 48 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATAATGAAGTTAGTATT+AGG 0.300859 5.3:-4378704 MS.gene072819:CDS
ATCAAAGAAAAGGCGAAATT+CGG 0.303929 5.3:+4378753 None:intergenic
AGCTAATATGTATGAGAGTT+TGG 0.328846 5.3:-4378724 MS.gene072819:CDS
GTTGGTTCGGATGTTGATTA+TGG 0.373327 5.3:-4378831 MS.gene072819:CDS
TACATATAACAAAAGAGAAT+TGG 0.390562 5.3:-4378416 MS.gene072819:CDS
CTTTGTTAAAATGTAACAAA+AGG 0.405159 5.3:+4380885 None:intergenic
AGTTGTATCGGAATACCTTC+TGG 0.405305 5.3:+4378294 None:intergenic
ATTAGGCTTGCTTCGTTGAA+TGG 0.409084 5.3:-4378687 MS.gene072819:CDS
AAATAATCCATCACAATTTG+CGG 0.419790 5.3:+4378879 None:intergenic
TCAAAGAAAAGGCGAAATTC+GGG 0.428198 5.3:+4378754 None:intergenic
GCCGCATGTGGTTTGAATAG+AGG 0.454378 5.3:-4378630 MS.gene072819:CDS
AAAATGTAACAAAAGGGAAC+AGG 0.460716 5.3:+4380892 None:intergenic
GGATGTTGATTATGGTGATC+GGG 0.472869 5.3:-4378823 MS.gene072819:CDS
CGGATGTTGATTATGGTGAT+CGG 0.488380 5.3:-4378824 MS.gene072819:CDS
ACAATCATTGTTCCGGGAGA+AGG 0.494039 5.3:-4378336 MS.gene072819:CDS
GGAGAAGGTGTCCTGGGAGA+AGG 0.494442 5.3:-4378321 MS.gene072819:CDS
ACGAGAGAGATTCGGGATGA+AGG 0.497605 5.3:-4378780 MS.gene072819:CDS
ATTTGTAGAAAATTAAGTGC+TGG 0.499835 5.3:+4378364 None:intergenic
TTTGTTAAAATGTAACAAAA+GGG 0.504821 5.3:+4380886 None:intergenic
CCGCATGTGGTTTGAATAGA+GGG 0.507976 5.3:-4378629 MS.gene072819:CDS
AGCTACATACATCAAAGAAA+AGG 0.510428 5.3:+4378743 None:intergenic
TGTTCCGGGAGAAGGTGTCC+TGG 0.516789 5.3:-4378328 MS.gene072819:CDS
ACAATATCATCTAGTTGTAT+CGG 0.522751 5.3:+4378282 None:intergenic
CTCGCCCTAGCTGATTCAAT+CGG 0.523181 5.3:+4378906 None:intergenic
TCTCCCAGGACACCTTCTCC+CGG 0.527854 5.3:+4378324 None:intergenic
TGTGATTGAAGTGGTTGGTT+CGG 0.536927 5.3:-4378844 MS.gene072819:CDS
GAGGTTTCCGCAAATTGTGA+TGG 0.568058 5.3:-4378886 MS.gene072819:CDS
CTTCAACGGAGACGAGGATG+AGG 0.568907 5.3:-4378390 MS.gene072819:CDS
GAAGGTGTCCTGGGAGAAGG+AGG 0.579384 5.3:-4378318 MS.gene072819:CDS
AAGAGAATTGGCAACTTCAA+CGG 0.579789 5.3:-4378404 MS.gene072819:CDS
ATCGGGATAAATTGAACATG+AGG 0.582590 5.3:-4378806 MS.gene072819:CDS
CCCTCTATTCAAACCACATG+CGG 0.583577 5.3:+4378629 None:intergenic
CTTCTGGACCTCCTTCTCCC+AGG 0.584827 5.3:+4378310 None:intergenic
GGTATTCGTGATAAGTCTAT+CGG 0.588128 5.3:-4378666 MS.gene072819:CDS
GTTCCGGGAGAAGGTGTCCT+GGG 0.590406 5.3:-4378327 MS.gene072819:CDS
CGATTGAATCAGCTAGGGCG+AGG 0.591847 5.3:-4378905 MS.gene072819:CDS
CTGGGAGAAGGAGGTCCAGA+AGG 0.597635 5.3:-4378309 MS.gene072819:CDS
GTTGCTCTTAAAGCCGCATG+TGG 0.609202 5.3:-4378642 MS.gene072819:CDS
TTTAAATGGAACAATACATG+AGG 0.616976 5.3:-4382101 None:intergenic
TTTGCCGATTGAATCAGCTA+GGG 0.619702 5.3:-4378910 MS.gene072819:CDS
TCGGGATAAATTGAACATGA+GGG 0.624044 5.3:-4378805 MS.gene072819:CDS
TGACGATCATGTGATTGAAG+TGG 0.631526 5.3:-4378853 MS.gene072819:CDS
CGGGATAAATTGAACATGAG+GGG 0.637687 5.3:-4378804 MS.gene072819:CDS
TGGCAACTTCAACGGAGACG+AGG 0.648784 5.3:-4378396 MS.gene072819:CDS
GGGATAAATTGAACATGAGG+GGG 0.653201 5.3:-4378803 MS.gene072819:CDS
GAGGGTAAATTATCTGACCC+AGG 0.656733 5.3:-4382082 MS.gene072819:intron
GATCATGTGATTGAAGTGGT+TGG 0.659806 5.3:-4378849 MS.gene072819:CDS
TTAAATGGAACAATACATGA+GGG 0.693624 5.3:-4382100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCAAATATAATTAAG+AGG + chr5.3:4379246-4379265 None:intergenic 10.0%
!! ATATTAACTTTAAATTACTT+AGG + chr5.3:4380146-4380165 None:intergenic 10.0%
!! ATGATATATATTATACTAAA+TGG - chr5.3:4379984-4380003 MS.gene072819:intron 10.0%
!! TATTAACTTTAAATTACTTA+GGG + chr5.3:4380145-4380164 None:intergenic 10.0%
!! TGATATATATTATACTAAAT+GGG - chr5.3:4379985-4380004 MS.gene072819:intron 10.0%
!!! ATTTAATGTTTTATTGTTTA+GGG - chr5.3:4381882-4381901 MS.gene072819:intron 10.0%
!!! TATTTAATGTTTTATTGTTT+AGG - chr5.3:4381881-4381900 MS.gene072819:intron 10.0%
!!! TTAATTATATTTGAATTTTG+TGG - chr5.3:4379247-4379266 MS.gene072819:intron 10.0%
!!! TTATGATATTAATTTGATTT+GGG + chr5.3:4378575-4378594 None:intergenic 10.0%
!!! TTTATGATATTAATTTGATT+TGG + chr5.3:4378576-4378595 None:intergenic 10.0%
!! CTATTTAAAAATTGCATAAA+TGG - chr5.3:4380017-4380036 MS.gene072819:intron 15.0%
!! GAAACATATTAATAAACAAA+AGG + chr5.3:4379115-4379134 None:intergenic 15.0%
!! TTTGTTAAAATGTAACAAAA+GGG + chr5.3:4379501-4379520 None:intergenic 15.0%
!!! AAACTAATGTTTTATAACTT+TGG + chr5.3:4381040-4381059 None:intergenic 15.0%
!!! AACATTAGTTTTAACAATTT+TGG - chr5.3:4381049-4381068 MS.gene072819:intron 15.0%
!!! AACTAATGTTTTATAACTTT+GGG + chr5.3:4381039-4381058 None:intergenic 15.0%
!!! AATTATTACCTTTATTTCAA+TGG - chr5.3:4378389-4378408 MS.gene072819:CDS 15.0%
!!! TATCATAAAATTGAGAATTT+TGG - chr5.3:4380997-4381016 MS.gene072819:intron 15.0%
!!! TTTTATCCTTTTTAGTATTA+TGG - chr5.3:4378333-4378352 MS.gene072819:CDS 15.0%
!! AAGGATAAAAATAATTTACC+TGG + chr5.3:4378323-4378342 None:intergenic 20.0%
!! AATATGAATATAATGTGCTT+TGG - chr5.3:4379926-4379945 MS.gene072819:intron 20.0%
!! AATATGACATAATAGAATTC+TGG + chr5.3:4379410-4379429 None:intergenic 20.0%
!! ACAAAGAAATTTCCTAAAAA+AGG - chr5.3:4381781-4381800 MS.gene072819:intron 20.0%
!! AGGATAAAAATAATTTACCT+GGG + chr5.3:4378322-4378341 None:intergenic 20.0%
!! CTTTCATATTAATTATTGAG+TGG - chr5.3:4380791-4380810 MS.gene072819:intron 20.0%
!! CTTTGTTAAAATGTAACAAA+AGG + chr5.3:4379502-4379521 None:intergenic 20.0%
!! GAAGTTTATTTATTATTGAC+TGG - chr5.3:4380643-4380662 MS.gene072819:intron 20.0%
!! TAATCTGCATTGAATATAAA+AGG + chr5.3:4381808-4381827 None:intergenic 20.0%
!! TACATATAACAAAAGAGAAT+TGG - chr5.3:4381968-4381987 MS.gene072819:intron 20.0%
!! TTCAAATATAATTAAGAGGA+AGG + chr5.3:4379242-4379261 None:intergenic 20.0%
!! TTTAAGGAAATATTAGTATC+TGG - chr5.3:4380383-4380402 MS.gene072819:intron 20.0%
!!! AACAATTTTTTATAACGATG+TGG - chr5.3:4380291-4380310 MS.gene072819:intron 20.0%
!!! AATATAAAAGGACCTTTTTT+AGG + chr5.3:4381796-4381815 None:intergenic 20.0%
!!! ACAATTTTTTATAACGATGT+GGG - chr5.3:4380292-4380311 MS.gene072819:intron 20.0%
!!! ACTAATGTTTTATAACTTTG+GGG + chr5.3:4381038-4381057 None:intergenic 20.0%
!!! AGTTTTCCATAATACTAAAA+AGG + chr5.3:4378342-4378361 None:intergenic 20.0%
!!! ATTTATTTTGTTTAACTCAG+AGG - chr5.3:4380348-4380367 MS.gene072819:intron 20.0%
!!! CTTTTGTTACATTTTAACAA+AGG - chr5.3:4379500-4379519 MS.gene072819:intron 20.0%
! AAATAATCCATCACAATTTG+CGG + chr5.3:4381508-4381527 None:intergenic 25.0%
! AAATACAAGCACTATTTCAT+AGG + chr5.3:4379366-4379385 None:intergenic 25.0%
! AATAACAAAATCGGTTATGA+CGG - chr5.3:4379556-4379575 MS.gene072819:intron 25.0%
! AATGGGTGTAATAACAAAAT+CGG - chr5.3:4379547-4379566 MS.gene072819:intron 25.0%
! ATAGTGAGAATTGAGAAAAA+AGG + chr5.3:4380980-4380999 None:intergenic 25.0%
! ATGAAAGCAAACATTAAACA+CGG + chr5.3:4380778-4380797 None:intergenic 25.0%
! ATTTGTAGAAAATTAAGTGC+TGG + chr5.3:4382023-4382042 None:intergenic 25.0%
! CAAAGAAATCCAAACAAAAA+AGG + chr5.3:4379274-4379293 None:intergenic 25.0%
! CATCACATGTATTATGTTTA+TGG - chr5.3:4378950-4378969 MS.gene072819:intron 25.0%
! CTAGTAAAATATTTCCATAG+CGG + chr5.3:4379891-4379910 None:intergenic 25.0%
! GTATAGAACCATTGAAATAA+AGG + chr5.3:4378400-4378419 None:intergenic 25.0%
! TACAGTATCTTTATCAGTAT+CGG + chr5.3:4378910-4378929 None:intergenic 25.0%
! TGGATAATGAAGTTAGTATT+AGG - chr5.3:4381680-4381699 MS.gene072819:intron 25.0%
! TGTTTGTAGAGATTGAAAAT+TGG - chr5.3:4379292-4379311 MS.gene072819:intron 25.0%
! TTAAGTTATCATGCAATGAA+AGG + chr5.3:4380749-4380768 None:intergenic 25.0%
!! AATATTTTACTAGCATGTGT+TGG - chr5.3:4379898-4379917 MS.gene072819:intron 25.0%
!! ATTTTCTACAATCATTGTTC+CGG - chr5.3:4382041-4382060 MS.gene072819:intron 25.0%
!! TTTAGGTTTAAAAGATTGAC+TGG - chr5.3:4379653-4379672 MS.gene072819:intron 25.0%
!! TTTTGACATAATTGCTCAAA+AGG + chr5.3:4380930-4380949 None:intergenic 25.0%
!!! ACTTGTTTGGTTTTGTTTTT+AGG - chr5.3:4379636-4379655 MS.gene072819:intron 25.0%
!!! CTAAATACTGACTGAAATTT+TGG - chr5.3:4378645-4378664 MS.gene072819:CDS 25.0%
AAAATGTAACAAAAGGGAAC+AGG + chr5.3:4379495-4379514 None:intergenic 30.0%
AAAGTCAACGTCATAAAGTT+TGG + chr5.3:4380063-4380082 None:intergenic 30.0%
AACATAATACATGTGATGCA+CGG + chr5.3:4378948-4378967 None:intergenic 30.0%
AATAATGATCTCATGCACTA+AGG + chr5.3:4380836-4380855 None:intergenic 30.0%
ACTGATCTAGCATATATTCA+TGG - chr5.3:4378359-4378378 MS.gene072819:CDS 30.0%
AGCTAATATGTATGAGAGTT+TGG - chr5.3:4381660-4381679 MS.gene072819:intron 30.0%
AGCTACATACATCAAAGAAA+AGG + chr5.3:4381644-4381663 None:intergenic 30.0%
ATAACAAAATCGGTTATGAC+GGG - chr5.3:4379557-4379576 MS.gene072819:intron 30.0%
ATCAAAGAAAAGGCGAAATT+CGG + chr5.3:4381634-4381653 None:intergenic 30.0%
ATTCTCTAGCTACTACTAAT+GGG - chr5.3:4379530-4379549 MS.gene072819:intron 30.0%
GATTTCAGTTAACGATTACA+AGG - chr5.3:4379596-4379615 MS.gene072819:intron 30.0%
GGCTTGGAATCATTAAAAAA+TGG - chr5.3:4378484-4378503 MS.gene072819:intron 30.0%
GTATTGAGCATCTTAAAAAC+AGG + chr5.3:4379829-4379848 None:intergenic 30.0%
GTTTATTGTCTGTTCAGTTA+TGG - chr5.3:4378778-4378797 MS.gene072819:CDS 30.0%
TATTCTCTAGCTACTACTAA+TGG - chr5.3:4379529-4379548 MS.gene072819:intron 30.0%
! GAGGTATACATCTTTGTTTA+AGG - chr5.3:4380367-4380386 MS.gene072819:intron 30.0%
! TTTTCTACAATCATTGTTCC+GGG - chr5.3:4382042-4382061 MS.gene072819:intron 30.0%
!! AGGTGAGAAATTTTGAGAAT+TGG + chr5.3:4380671-4380690 None:intergenic 30.0%
!! GTATTTTATCTGTAGTTCTG+TGG - chr5.3:4379380-4379399 MS.gene072819:intron 30.0%
!! TACTGACTGAAATTTTGGTA+TGG - chr5.3:4378650-4378669 MS.gene072819:CDS 30.0%
!! TGCTTTTAGCTATATAGTGT+TGG - chr5.3:4381837-4381856 MS.gene072819:intron 30.0%
!! TTTTGTGGACCTTTTTTGTT+TGG - chr5.3:4379262-4379281 MS.gene072819:intron 30.0%
!!! TTCTCTTTTTTCCTACCATT+GGG - chr5.3:4381095-4381114 MS.gene072819:intron 30.0%
!!! TTTCTCTTTTTTCCTACCAT+TGG - chr5.3:4381094-4381113 MS.gene072819:intron 30.0%
AAAGGGATATCTGGCATATT+TGG + chr5.3:4379772-4379791 None:intergenic 35.0%
AAGAGAATTGGCAACTTCAA+CGG - chr5.3:4381980-4381999 MS.gene072819:intron 35.0%
ACTAATATCCACTGAGCTAT+AGG + chr5.3:4379218-4379237 None:intergenic 35.0%
AGTGTATTCATGAAGCTAGA+TGG - chr5.3:4378463-4378482 MS.gene072819:intron 35.0%
ATCGGGATAAATTGAACATG+AGG - chr5.3:4381578-4381597 MS.gene072819:intron 35.0%
ATTGTAGTGTTCAAGAACCA+GGG + chr5.3:4381154-4381173 None:intergenic 35.0%
CATAATTGCTCAAAAGGTGA+AGG + chr5.3:4380924-4380943 None:intergenic 35.0%
CTGCTAGGATATAGACTTAT+AGG - chr5.3:4379160-4379179 MS.gene072819:intron 35.0%
GGTATTCGTGATAAGTCTAT+CGG - chr5.3:4381718-4381737 MS.gene072819:intron 35.0%
GGTTTAAAAGATTGACTGGT+CGG - chr5.3:4379657-4379676 MS.gene072819:intron 35.0%
TACGATATCTTAACCGTTGT+CGG - chr5.3:4381369-4381388 MS.gene072819:intron 35.0%
TAGCAGATCTTCAGCTAAAA+TGG + chr5.3:4379137-4379156 None:intergenic 35.0%
TCAAAGAAAAGGCGAAATTC+GGG + chr5.3:4381633-4381652 None:intergenic 35.0%
TCAATTTCTACACAGTGAAG+TGG + chr5.3:4381303-4381322 None:intergenic 35.0%
TCGGGATAAATTGAACATGA+GGG - chr5.3:4381579-4381598 MS.gene072819:intron 35.0%
TCTTAAAGAGATGTAGAGCT+AGG - chr5.3:4380531-4380550 MS.gene072819:intron 35.0%
! AACAAAATAAATAAGCGCCG+AGG + chr5.3:4380340-4380359 None:intergenic 35.0%
! ATTACAAGGAGTACATCCTT+GGG - chr5.3:4379610-4379629 MS.gene072819:intron 35.0%
! GGACTTCATTTTCCAAATTG+AGG + chr5.3:4379808-4379827 None:intergenic 35.0%
! TAGCTATATAGTGTTGGAAG+TGG - chr5.3:4381843-4381862 MS.gene072819:intron 35.0%
! TCTAGCTTCATGAATACACT+TGG + chr5.3:4378463-4378482 None:intergenic 35.0%
! TTCAGCTTGTTCAAATGATG+TGG - chr5.3:4381412-4381431 MS.gene072819:intron 35.0%
! TTGGTCAAATTTTCTGCACA+AGG + chr5.3:4378444-4378463 None:intergenic 35.0%
!! AAATGTTCTAGAAGATTCGC+TGG + chr5.3:4381349-4381368 None:intergenic 35.0%
!! ACAAAATAAATAAGCGCCGA+GGG + chr5.3:4380339-4380358 None:intergenic 35.0%
!! GTTTAGTAGTCAGTTGGTTT+TGG - chr5.3:4379079-4379098 MS.gene072819:intron 35.0%
!! TTTGTTAGTTTGTCATCGCA+TGG - chr5.3:4380175-4380194 MS.gene072819:intron 35.0%
!! TTTTAGCTGAAGATCTGCTA+TGG - chr5.3:4379137-4379156 MS.gene072819:intron 35.0%
AACCTAATATGTCTGTCGTG+AGG + chr5.3:4378818-4378837 None:intergenic 40.0%
AATCAAGTAGCAAGTACGCA+TGG + chr5.3:4378552-4378571 None:intergenic 40.0%
ACCATGCTTAAAGGGATATC+TGG + chr5.3:4379781-4379800 None:intergenic 40.0%
AGTTGTATCGGAATACCTTC+TGG + chr5.3:4382093-4382112 None:intergenic 40.0%
ATATGTACATAGTCCTGTCG+AGG + chr5.3:4381955-4381974 None:intergenic 40.0%
ATCACCACTAACACTCAACA+AGG + chr5.3:4380691-4380710 None:intergenic 40.0%
ATTCATGAAGCTAGATGGCT+TGG - chr5.3:4378468-4378487 MS.gene072819:intron 40.0%
ATTCTATGTTGTTCCTCGAC+AGG - chr5.3:4381939-4381958 MS.gene072819:intron 40.0%
CAAACCAGAAAGTCAAACTG+AGG + chr5.3:4380227-4380246 None:intergenic 40.0%
CATTAAAAAATGGCAGCGCA+TGG - chr5.3:4378494-4378513 MS.gene072819:intron 40.0%
CGGGATAAATTGAACATGAG+GGG - chr5.3:4381580-4381599 MS.gene072819:intron 40.0%
CTAGGAGTTTAGTAGTCAGT+TGG - chr5.3:4379073-4379092 MS.gene072819:intron 40.0%
GACACAAGTATAGCAGGTAT+AGG - chr5.3:4379725-4379744 MS.gene072819:intron 40.0%
GATCATGTGATTGAAGTGGT+TGG - chr5.3:4381535-4381554 MS.gene072819:intron 40.0%
GATGTAAAACGTCTACACAG+AGG + chr5.3:4380591-4380610 None:intergenic 40.0%
GATTGTAGTGTTCAAGAACC+AGG + chr5.3:4381155-4381174 None:intergenic 40.0%
GGGATAAATTGAACATGAGG+GGG - chr5.3:4381581-4381600 MS.gene072819:intron 40.0%
GTCTATTTCCTATAGCTCAG+TGG - chr5.3:4379207-4379226 MS.gene072819:intron 40.0%
TCACAAGACACAAGTATAGC+AGG - chr5.3:4379719-4379738 MS.gene072819:intron 40.0%
TGACGATCATGTGATTGAAG+TGG - chr5.3:4381531-4381550 MS.gene072819:intron 40.0%
TTGCAGAATGATACCGACAA+CGG + chr5.3:4381385-4381404 None:intergenic 40.0%
! ACGACATTGACTACTACTCA+AGG - chr5.3:4380111-4380130 MS.gene072819:intron 40.0%
! AGAGATCATGATGACGTGAA+AGG - chr5.3:4379014-4379033 MS.gene072819:intron 40.0%
! ATGTCTAAATTGTGCCGCTA+TGG - chr5.3:4379874-4379893 MS.gene072819:intron 40.0%
! ATTAGGCTTGCTTCGTTGAA+TGG - chr5.3:4381697-4381716 MS.gene072819:intron 40.0%
! CGGATGTTGATTATGGTGAT+CGG - chr5.3:4381560-4381579 MS.gene072819:intron 40.0%
! GAGATCATGATGACGTGAAA+GGG - chr5.3:4379015-4379034 MS.gene072819:intron 40.0%
! GATTACAAGGAGTACATCCT+TGG - chr5.3:4379609-4379628 MS.gene072819:intron 40.0%
! GGATGTTGATTATGGTGATC+GGG - chr5.3:4381561-4381580 MS.gene072819:intron 40.0%
! TGGTTTGTCATCACATGAGA+TGG - chr5.3:4380240-4380259 MS.gene072819:intron 40.0%
! TGTGATTGAAGTGGTTGGTT+CGG - chr5.3:4381540-4381559 MS.gene072819:intron 40.0%
! TTCACCTCAGTTTGACTTTC+TGG - chr5.3:4380220-4380239 MS.gene072819:intron 40.0%
! TTTGCCGATTGAATCAGCTA+GGG - chr5.3:4381474-4381493 MS.gene072819:intron 40.0%
!! GTTGGTTCGGATGTTGATTA+TGG - chr5.3:4381553-4381572 MS.gene072819:intron 40.0%
!! TTTTGCCGATTGAATCAGCT+AGG - chr5.3:4381473-4381492 MS.gene072819:intron 40.0%
AAACCAAACAAGTGAGCCCA+AGG + chr5.3:4379629-4379648 None:intergenic 45.0%
AAGAACCAGGGAGAGAATAG+AGG + chr5.3:4381142-4381161 None:intergenic 45.0%
AAGTATAGCAGGTATAGGCG+TGG - chr5.3:4379730-4379749 MS.gene072819:intron 45.0%
ACAATCATTGTTCCGGGAGA+AGG - chr5.3:4382048-4382067 MS.gene072819:intron 45.0%
ACAGTGAAGTGGCAAACAGA+CGG + chr5.3:4381292-4381311 None:intergenic 45.0%
ACGTCTACACAGAGGAATAC+AGG + chr5.3:4380583-4380602 None:intergenic 45.0%
CCCTCTATTCAAACCACATG+CGG + chr5.3:4381758-4381777 None:intergenic 45.0%
CCGCATGTGGTTTGAATAGA+GGG - chr5.3:4381755-4381774 MS.gene072819:intron 45.0%
CTCACCTTGTTGAGTGTTAG+TGG - chr5.3:4380684-4380703 MS.gene072819:intron 45.0%
GAGGCAACACCATGCTTAAA+GGG + chr5.3:4379789-4379808 None:intergenic 45.0%
GAGGGTAAATTATCTGACCC+AGG - chr5.3:4378302-4378321 MS.gene072819:CDS 45.0%
GAGGTTTCCGCAAATTGTGA+TGG - chr5.3:4381498-4381517 MS.gene072819:intron 45.0%
GCCAGATATCCCTTTAAGCA+TGG - chr5.3:4379777-4379796 MS.gene072819:intron 45.0%
GGAGATGAAGATGTAGAGCT+AGG - chr5.3:4379055-4379074 MS.gene072819:intron 45.0%
GTCCTCACGACAGACATATT+AGG - chr5.3:4378813-4378832 MS.gene072819:CDS 45.0%
TGAGGCAACACCATGCTTAA+AGG + chr5.3:4379790-4379809 None:intergenic 45.0%
! AACACGCACTCTTGTCGTTT+CGG - chr5.3:4378875-4378894 MS.gene072819:CDS 45.0%
! TACTTGCTGCATGTAGTCCT+TGG + chr5.3:4380463-4380482 None:intergenic 45.0%
!! AGCATGGTGTTGCCTCAATT+TGG - chr5.3:4379793-4379812 MS.gene072819:intron 45.0%
!! AGCTAGGCGTCAGTTGTTTT+TGG - chr5.3:4380547-4380566 MS.gene072819:intron 45.0%
!! ATAAATAAGCGCCGAGGGTT+TGG + chr5.3:4380334-4380353 None:intergenic 45.0%
ACGAGAGAGATTCGGGATGA+AGG - chr5.3:4381604-4381623 MS.gene072819:intron 50.0%
AGGGCTTTCGATGAAGGAAG+TGG + chr5.3:4381187-4381206 None:intergenic 50.0%
AGGGTGATCTCAGTTGCGAT+AGG - chr5.3:4379034-4379053 MS.gene072819:intron 50.0%
ATGTAGTCCTTGGCACACAG+TGG + chr5.3:4380453-4380472 None:intergenic 50.0%
ATTTCCGAGCTCCAAACCCT+CGG - chr5.3:4380320-4380339 MS.gene072819:intron 50.0%
CATCCTTGGGCTCACTTGTT+TGG - chr5.3:4379623-4379642 MS.gene072819:intron 50.0%
CGTCATCATGATCTCTGCGT+AGG + chr5.3:4379010-4379029 None:intergenic 50.0%
GAAGATCTGCTATGGCTGCT+AGG - chr5.3:4379145-4379164 MS.gene072819:intron 50.0%
GCCGCATGTGGTTTGAATAG+AGG - chr5.3:4381754-4381773 MS.gene072819:intron 50.0%
GGGCTTTCGATGAAGGAAGT+GGG + chr5.3:4381186-4381205 None:intergenic 50.0%
GTTGCTCTTAAAGCCGCATG+TGG - chr5.3:4381742-4381761 MS.gene072819:intron 50.0%
TTGTGCCTCTATTCTCTCCC+TGG - chr5.3:4381134-4381153 MS.gene072819:intron 50.0%
! ACACGCACTCTTGTCGTTTC+GGG - chr5.3:4378876-4378895 MS.gene072819:CDS 50.0%
! ACGACAAGAGTGCGTGTTGA+AGG + chr5.3:4378873-4378892 None:intergenic 50.0%
! AGATTCGCTGGTATCGAGAC+TGG + chr5.3:4381337-4381356 None:intergenic 50.0%
! CTCGCCCTAGCTGATTCAAT+CGG + chr5.3:4381481-4381500 None:intergenic 50.0%
AAGTGGCAAACAGACGGTGG+TGG + chr5.3:4381286-4381305 None:intergenic 55.0%
CGATTGAATCAGCTAGGGCG+AGG - chr5.3:4381479-4381498 MS.gene072819:intron 55.0%
CTTCAACGGAGACGAGGATG+AGG - chr5.3:4381994-4382013 MS.gene072819:intron 55.0%
GGTGGCATGATCTTTGGTGG+TGG + chr5.3:4381268-4381287 None:intergenic 55.0%
GTCGAGAGGGCTTTCGATGA+AGG + chr5.3:4381193-4381212 None:intergenic 55.0%
GTCTGGCATCAACGGAGTTG+AGG + chr5.3:4381218-4381237 None:intergenic 55.0%
GTGAAGTGGCAAACAGACGG+TGG + chr5.3:4381289-4381308 None:intergenic 55.0%
TGAGGGGGACGAGAGAGATT+CGG - chr5.3:4381596-4381615 MS.gene072819:intron 55.0%
TGGCAACTTCAACGGAGACG+AGG - chr5.3:4381988-4382007 MS.gene072819:intron 55.0%
! ACGCACTCTTGTCGTTTCGG+GGG - chr5.3:4378878-4378897 MS.gene072819:CDS 55.0%
! CACGCACTCTTGTCGTTTCG+GGG - chr5.3:4378877-4378896 MS.gene072819:CDS 55.0%
! CAGCAAGTACTGCAGCAGAC+AGG - chr5.3:4380474-4380493 MS.gene072819:intron 55.0%
! GACGGTGGTGGCATGATCTT+TGG + chr5.3:4381274-4381293 None:intergenic 55.0%
! GGTGGTGGCATGATCTTTGG+TGG + chr5.3:4381271-4381290 None:intergenic 55.0%
ACACGACGACGCCCAATGGT+AGG + chr5.3:4381109-4381128 None:intergenic 60.0%
ACGCTGACCACTGTGTGCCA+AGG - chr5.3:4380443-4380462 MS.gene072819:intron 60.0%
ACGGAGTTGAGGACGTCGAG+AGG + chr5.3:4381207-4381226 None:intergenic 60.0%
CGGAGTTGAGGACGTCGAGA+GGG + chr5.3:4381206-4381225 None:intergenic 60.0%
CTGGGAGAAGGAGGTCCAGA+AGG - chr5.3:4382075-4382094 MS.gene072819:intron 60.0%
CTTCTGGACCTCCTTCTCCC+AGG + chr5.3:4382077-4382096 None:intergenic 60.0%
GAGGGGGACGAGAGAGATTC+GGG - chr5.3:4381597-4381616 MS.gene072819:intron 60.0%
GATGTCGTCGATGGAGGTGG+TGG + chr5.3:4381244-4381263 None:intergenic 60.0%
GGTGATGTCGTCGATGGAGG+TGG + chr5.3:4381247-4381266 None:intergenic 60.0%
GGTGGCAGGTCTGGCATCAA+CGG + chr5.3:4381226-4381245 None:intergenic 60.0%
GTGAACACGACGACGCCCAA+TGG + chr5.3:4381113-4381132 None:intergenic 60.0%
TCTCCCAGGACACCTTCTCC+CGG + chr5.3:4382063-4382082 None:intergenic 60.0%
! GGTGGTGATGTCGTCGATGG+AGG + chr5.3:4381250-4381269 None:intergenic 60.0%
! GGTGGTGGTGATGTCGTCGA+TGG + chr5.3:4381253-4381272 None:intergenic 60.0%
!! GAAGGTGTCCTGGGAGAAGG+AGG - chr5.3:4382066-4382085 MS.gene072819:intron 60.0%
!! GGAGAAGGTGTCCTGGGAGA+AGG - chr5.3:4382063-4382082 MS.gene072819:intron 60.0%
!! GTTCCGGGAGAAGGTGTCCT+GGG - chr5.3:4382057-4382076 MS.gene072819:intron 60.0%
!! TGTTCCGGGAGAAGGTGTCC+TGG - chr5.3:4382056-4382075 MS.gene072819:intron 60.0%
! AGCGCCGAGGGTTTGGAGCT+CGG + chr5.3:4380327-4380346 None:intergenic 65.0%
! GATGGAGGTGGTGGCAGGTC+TGG + chr5.3:4381235-4381254 None:intergenic 65.0%
! TCGTCGATGGAGGTGGTGGC+AGG + chr5.3:4381240-4381259 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 4378288 4382118 4378288 ID=MS.gene072819
chr5.3 mRNA 4378288 4382118 4378288 ID=MS.gene072819.t1;Parent=MS.gene072819
chr5.3 exon 4382083 4382118 4382083 ID=MS.gene072819.t1.exon1;Parent=MS.gene072819.t1
chr5.3 CDS 4382083 4382118 4382083 ID=cds.MS.gene072819.t1;Parent=MS.gene072819.t1
chr5.3 exon 4380885 4380933 4380885 ID=MS.gene072819.t1.exon2;Parent=MS.gene072819.t1
chr5.3 CDS 4380885 4380933 4380885 ID=cds.MS.gene072819.t1;Parent=MS.gene072819.t1
chr5.3 exon 4378604 4378936 4378604 ID=MS.gene072819.t1.exon3;Parent=MS.gene072819.t1
chr5.3 CDS 4378604 4378936 4378604 ID=cds.MS.gene072819.t1;Parent=MS.gene072819.t1
chr5.3 exon 4378288 4378445 4378288 ID=MS.gene072819.t1.exon4;Parent=MS.gene072819.t1
chr5.3 CDS 4378288 4378445 4378288 ID=cds.MS.gene072819.t1;Parent=MS.gene072819.t1
Gene Sequence

>MS.gene072819

ATGGAACAATACATGAGGGTAAATTATCTGACCCAGGTAAATTATTTTTATCCTTTTTAGTATTATGGAAAACTGATCTAGCATATATTCATGGTTACTAGAATTATTACCTTTATTTCAATGGTTCTATACTTAACTATTTAAAAATCATAGCCTTGTGCAGAAAATTTGACCAAGTGTATTCATGAAGCTAGATGGCTTGGAATCATTAAAAAATGGCAGCGCATGGTTGTTATATGAAGTTAGAGTTTATAAGTGTATCCATGCGTACTTGCTACTTGATTCCCAAATCAAATTAATATCATAAATTATTTATTATAATATAAGATATGTGTTTAATGTTGTAAATTGAAAATTCTAAATACTGACTGAAATTTTGGTATGGATAGAGAATGTAAACATGTTACATATATATATATATATATATATATATATATATATATATATATATATATATGACAAATAGATTGTCAAAGAAAATTTTAGTCTCGTTTATTGTCTGTTCAGTTATGGAGTATTGAAGATGTCCTCACGACAGACATATTAGGTTTATCTATTTAAAAAAGAATTCTTTTTGATACTCCTTCAACACGCACTCTTGTCGTTTCGGGGGACATATCCGATACTGATAAAGATACTGTAGCAAGAAACATGAATCCGTGCATCACATGTATTATGTTTATGGCATTTATTCTCATGTTAATGAGTGTTTTATTTTTCCTACGCAGAGATCATGATGACGTGAAAGGGTGATCTCAGTTGCGATAGGAGATGAAGATGTAGAGCTAGGAGTTTAGTAGTCAGTTGGTTTTGGAGTCAGCTTTCCTTTTGTTTATTAATATGTTTCCATTTTAGCTGAAGATCTGCTATGGCTGCTAGGATATAGACTTATAGGATGAGTTATTTGCAGTCACGATTAGTCTATTTCCTATAGCTCAGTGGATATTAGTTCCTTCCTCTTAATTATATTTGAATTTTGTGGACCTTTTTTGTTTGGATTTCTTTGTTTGTAGAGATTGAAAATTGGTAGTGTGCTGTTTTCACTGTTACTTTTTTGCTATATACGAATGTGCGACCTATGAAATAGTGCTTGTATTTTATCTGTAGTTCTGTGGTATACCAGAATTCTATTATGTCATATTTTTTATGAAATTATTGTTTCAATTTTAATTGAACATGCGACAGCTCTCTGATGCTATGCTAGCCTGTTCCCTTTTGTTACATTTTAACAAAGGTTAGTTTATTCTCTAGCTACTACTAATGGGTGTAATAACAAAATCGGTTATGACGGGATAGAAGTTGAGCATCGATTTCAGTTAACGATTACAAGGAGTACATCCTTGGGCTCACTTGTTTGGTTTTGTTTTTAGGTTTAAAAGATTGACTGGTCGGAATGAAGTAGCAATCTCAGCTAACGATCACAAATTCTACTCACAAGACACAAGTATAGCAGGTATAGGCGTGGTGCATCAATTTCACTTCCAAATATGCCAGATATCCCTTTAAGCATGGTGTTGCCTCAATTTGGAAAATGAAGTCCTGTTTTTAAGATGCTCAATACGTAAGCTACTGCAATTTTTTGTGCTATGTCTAAATTGTGCCGCTATGGAAATATTTTACTAGCATGTGTTGGTTATGAATATGAATATAATGTGCTTTGGCATCTGCTGCTGCACAATATAACGATTGATATGTAATGATATATATTATACTAAATGGGATAGTAATACTATTTAAAAATTGCATAAATGGTAATTGCTGCAGTTTCTTGTCCAAACTTTATGACGTTGACTTTTGACTTGTTTTTACGAGCAGACAGTTCTACGACATTGACTACTACTCAAGGATATCGCTCCCTAAGTAATTTAAAGTTAATATATTATAGTTTTTGTTAGTTTGTCATCGCATGGAATAGATAGTGAATGTTGTTTTTTCACCTCAGTTTGACTTTCTGGTTTGTCATCACATGAGATGGATAGTGAATGTTGTTACTTCAAATTTCTAACAATTTTTTATAACGATGTGGGACTTTATTTCCGAGCTCCAAACCCTCGGCGCTTATTTATTTTGTTTAACTCAGAGGTATACATCTTTGTTTAAGGAAATATTAGTATCTGGTGTGAGAATGAATGTGTTAATTTCAGAAATGACATACACGCTGACCACTGTGTGCCAAGGACTACATGCAGCAAGTACTGCAGCAGACAGGATAATCTAGCACACTAGTTAAGCTTTTATAAGTGTCTTAAAGAGATGTAGAGCTAGGCGTCAGTTGTTTTTGGAGTCAGCTTTCCTGTATTCCTCTGTGTAGACGTTTTACATCAAGTTGAACTCTATTCTAAAATTTTAATTTTTGAAGTTTATTTATTATTGACTGGTACCAATTCTCAAAATTTCTCACCTTGTTGAGTGTTAGTGGTGATAGACATCTTATTCACATTTTGTTTAGTTGAGACTTCCTTTCATTGCATGATAACTTAAGACTGTCCGTGTTTAATGTTTGCTTTCATATTAATTATTGAGTGGTATTGTTGTTGCAACTTTTCCTTAGTGCATGAGATCATTATTTAGTTAACTCAGAGAGCTAGCTTGATGAAATTTCTAGCTTGATTACATATTTAAATCATTGAATACCTTCACCTTTTGAGCAATTATGTCAAAATTAACTTCAACAAAGTTGATTGATTTTCCTTTTTTCTCAATTCTCACTATCATAAAATTGAGAATTTTGGCTCATTTAAGAGAAACCCCAAAGTTATAAAACATTAGTTTTAACAATTTTGGCTCATACTTCTTCTCTATACGCTTTCTCTTTTTTCCTACCATTGGGCGTCGTCGTGTTCACTTTGTGCCTCTATTCTCTCCCTGGTTCTTGAACACTACAATCTCAACTCTCCCACTTCCTTCATCGAAAGCCCTCTCGACGTCCTCAACTCCGTTGATGCCAGACCTGCCACCACCTCCATCGACGACATCACCACCACCAAAGATCATGCCACCACCGTCTGTTTGCCACTTCACTGTGTAGAAATTGACGAAGATCGCTCCAGTCTCGATACCAGCGAATCTTCTAGAACATTTTACGATATCTTAACCGTTGTCGGTATCATTCTGCAATTTCTACTTCAGCTTGTTCAAATGATGTGGTTAATTCATTTTTTTTTGTTGAATTTGTGTAGTAGATGTTTTGCCGATTGAATCAGCTAGGGCGAGGTTTCCGCAAATTGTGATGGATTATTTTAATGACGATCATGTGATTGAAGTGGTTGGTTCGGATGTTGATTATGGTGATCGGGATAAATTGAACATGAGGGGGACGAGAGAGATTCGGGATGAAGGAGACCCGAATTTCGCCTTTTCTTTGATGTATGTAGCTAATATGTATGAGAGTTTGGATAATGAAGTTAGTATTAGGCTTGCTTCGTTGAATGGTATTCGTGATAAGTCTATCGGTGTTGCTCTTAAAGCCGCATGTGGTTTGAATAGAGGGCTCACAAAGAAATTTCCTAAAAAAGGTCCTTTTATATTCAATGCAGATTAGATTTCATTTGCTTTTAGCTATATAGTGTTGGAAGTGGAATTTTTGTATTATGTATTTAATGTTTTATTGTTTAGGGTCATATGATGTATTGTTTGTGTAACATTTAATGTATTCTATGTTGTTCCTCGACAGGACTATGTACATATAACAAAAGAGAATTGGCAACTTCAACGGAGACGAGGATGAGGTTTCCAGCACTTAATTTTCTACAAATTTTCTACAATCATTGTTCCGGGAGAAGGTGTCCTGGGAGAAGGAGGTCCAGAAGGTATTCCGATACAACTAGATGA

Protein sequence

>MS.gene072819.t1

MEQYMRVNYLTQLSDAMLACSLLLHFNKDVLPIESARARFPQIVMDYFNDDHVIEVVGSDVDYGDRDKLNMRGTREIRDEGDPNFAFSLMYVANMYESLDNEVSIRLASLNGIRDKSIGVALKAACGLNRGLTKKFPKKGLCTYNKRELATSTETRMRFPALNFLQIFYNHCSGRRCPGRRRSRRYSDTTR