Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21253.t1 | XP_003615394.1 | 99.1 | 542 | 4 | 1 | 1 | 541 | 1 | 542 | 1.40E-286 | 995 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21253.t1 | P93111 | 77.8 | 550 | 109 | 5 | 1 | 538 | 1 | 549 | 7.4e-228 | 791.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21253.t1 | B7FLG0 | 99.1 | 542 | 4 | 1 | 1 | 541 | 1 | 542 | 1.0e-286 | 995.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049173 | MS.gene21253 | 0.819703 | 1.01E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene21253 | 0.842732 | 2.16E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene21253 | 0.804609 | 1.99E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene21253 | 0.851421 | 8.98E-61 | -1.69E-46 |
| MS.gene049320 | MS.gene21253 | 0.857452 | 1.62E-62 | -1.69E-46 |
| MS.gene049369 | MS.gene21253 | 0.839022 | 2.03E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene21253 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene049614 | MS.gene21253 | 0.839193 | 1.83E-57 | -1.69E-46 |
| MS.gene049661 | MS.gene21253 | 0.810133 | 1.34E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene21253 | 0.834349 | 3.16E-56 | -1.69E-46 |
| MS.gene049828 | MS.gene21253 | 0.854068 | 1.57E-61 | -1.69E-46 |
| MS.gene049907 | MS.gene21253 | 0.801977 | 6.98E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene21253 | 0.822069 | 2.89E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene21253 | 0.844386 | 7.81E-59 | -1.69E-46 |
| MS.gene050165 | MS.gene21253 | 0.833602 | 4.85E-56 | -1.69E-46 |
| MS.gene050333 | MS.gene21253 | 0.864434 | 1.22E-64 | -1.69E-46 |
| MS.gene050353 | MS.gene21253 | -0.8034 | 3.55E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene21253 | 0.835787 | 1.37E-56 | -1.69E-46 |
| MS.gene050444 | MS.gene21253 | 0.816668 | 4.91E-52 | -1.69E-46 |
| MS.gene050504 | MS.gene21253 | 0.807177 | 5.74E-50 | -1.69E-46 |
| MS.gene050518 | MS.gene21253 | 0.817448 | 3.28E-52 | -1.69E-46 |
| MS.gene050520 | MS.gene21253 | 0.812097 | 5.03E-51 | -1.69E-46 |
| MS.gene050581 | MS.gene21253 | 0.817349 | 3.45E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene21253 | 0.821886 | 3.18E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene21253 | 0.812859 | 3.43E-51 | -1.69E-46 |
| MS.gene050686 | MS.gene21253 | 0.823995 | 1.03E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene21253 | 0.802179 | 6.34E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene21253 | 0.907789 | 3.46E-81 | -1.69E-46 |
| MS.gene050770 | MS.gene21253 | 0.907265 | 6.10E-81 | -1.69E-46 |
| MS.gene050772 | MS.gene21253 | 0.856844 | 2.44E-62 | -1.69E-46 |
| MS.gene05079 | MS.gene21253 | -0.804852 | 1.77E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene21253 | 0.817297 | 3.55E-52 | -1.69E-46 |
| MS.gene05100 | MS.gene21253 | 0.828627 | 8.09E-55 | -1.69E-46 |
| MS.gene051228 | MS.gene21253 | 0.892302 | 1.80E-74 | -1.69E-46 |
| MS.gene051551 | MS.gene21253 | 0.80687 | 6.67E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene21253 | 0.834637 | 2.67E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene21253 | 0.870154 | 1.81E-66 | -1.69E-46 |
| MS.gene051858 | MS.gene21253 | 0.829396 | 5.27E-55 | -1.69E-46 |
| MS.gene051949 | MS.gene21253 | 0.823862 | 1.10E-53 | -1.69E-46 |
| MS.gene052271 | MS.gene21253 | 0.896148 | 4.87E-76 | -1.69E-46 |
| MS.gene052290 | MS.gene21253 | 0.876943 | 9.34E-69 | -1.69E-46 |
| MS.gene052326 | MS.gene21253 | 0.801782 | 7.65E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene21253 | 0.858416 | 8.36E-63 | -1.69E-46 |
| MS.gene052615 | MS.gene21253 | 0.804691 | 1.91E-49 | -1.69E-46 |
| MS.gene052916 | MS.gene21253 | 0.842806 | 2.06E-58 | -1.69E-46 |
| MS.gene053009 | MS.gene21253 | 0.86847 | 6.37E-66 | -1.69E-46 |
| MS.gene053018 | MS.gene21253 | 0.83459 | 2.74E-56 | -1.69E-46 |
| MS.gene053103 | MS.gene21253 | 0.827078 | 1.91E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene21253 | 0.845493 | 3.92E-59 | -1.69E-46 |
| MS.gene053207 | MS.gene21253 | 0.831574 | 1.55E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene21253 | 0.805016 | 1.64E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene21253 | 0.846803 | 1.73E-59 | -1.69E-46 |
| MS.gene053286 | MS.gene21253 | 0.839507 | 1.52E-57 | -1.69E-46 |
| MS.gene053322 | MS.gene21253 | 0.869633 | 2.68E-66 | -1.69E-46 |
| MS.gene053384 | MS.gene21253 | 0.832311 | 1.02E-55 | -1.69E-46 |
| MS.gene053449 | MS.gene21253 | 0.806886 | 6.62E-50 | -1.69E-46 |
| MS.gene053632 | MS.gene21253 | 0.84115 | 5.66E-58 | -1.69E-46 |
| MS.gene053813 | MS.gene21253 | 0.845376 | 4.22E-59 | -1.69E-46 |
| MS.gene053915 | MS.gene21253 | 0.807414 | 5.11E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene21253 | 0.84355 | 1.31E-58 | -1.69E-46 |
| MS.gene054376 | MS.gene21253 | 0.881996 | 1.51E-70 | -1.69E-46 |
| MS.gene054600 | MS.gene21253 | 0.828025 | 1.13E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene21253 | 0.868307 | 7.20E-66 | -1.69E-46 |
| MS.gene054802 | MS.gene21253 | 0.858598 | 7.38E-63 | -1.69E-46 |
| MS.gene054803 | MS.gene21253 | 0.86306 | 3.26E-64 | -1.69E-46 |
| MS.gene054804 | MS.gene21253 | 0.863318 | 2.71E-64 | -1.69E-46 |
| MS.gene054954 | MS.gene21253 | 0.810233 | 1.28E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene21253 | 0.841822 | 3.76E-58 | -1.69E-46 |
| MS.gene055212 | MS.gene21253 | 0.831378 | 1.73E-55 | -1.69E-46 |
| MS.gene055254 | MS.gene21253 | 0.894636 | 2.05E-75 | -1.69E-46 |
| MS.gene055277 | MS.gene21253 | 0.810286 | 1.24E-50 | -1.69E-46 |
| MS.gene055362 | MS.gene21253 | 0.839725 | 1.33E-57 | -1.69E-46 |
| MS.gene055397 | MS.gene21253 | 0.878036 | 3.88E-69 | -1.69E-46 |
| MS.gene055497 | MS.gene21253 | -0.806444 | 8.20E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene21253 | 0.88051 | 5.17E-70 | -1.69E-46 |
| MS.gene055502 | MS.gene21253 | 0.810695 | 1.01E-50 | -1.69E-46 |
| MS.gene055636 | MS.gene21253 | 0.875137 | 3.91E-68 | -1.69E-46 |
| MS.gene055638 | MS.gene21253 | 0.871329 | 7.43E-67 | -1.69E-46 |
| MS.gene055647 | MS.gene21253 | 0.849583 | 2.95E-60 | -1.69E-46 |
| MS.gene055722 | MS.gene21253 | 0.864632 | 1.06E-64 | -1.69E-46 |
| MS.gene05592 | MS.gene21253 | 0.88499 | 1.20E-71 | -1.69E-46 |
| MS.gene055941 | MS.gene21253 | 0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene055956 | MS.gene21253 | -0.801405 | 9.15E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene21253 | 0.808296 | 3.32E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene21253 | 0.857624 | 1.44E-62 | -1.69E-46 |
| MS.gene056410 | MS.gene21253 | 0.81457 | 1.44E-51 | -1.69E-46 |
| MS.gene056449 | MS.gene21253 | 0.805999 | 1.02E-49 | -1.69E-46 |
| MS.gene056487 | MS.gene21253 | 0.823566 | 1.29E-53 | -1.69E-46 |
| MS.gene056609 | MS.gene21253 | 0.84776 | 9.43E-60 | -1.69E-46 |
| MS.gene056611 | MS.gene21253 | 0.812376 | 4.37E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene21253 | 0.862208 | 5.96E-64 | -1.69E-46 |
| MS.gene056942 | MS.gene21253 | 0.831024 | 2.11E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene21253 | 0.894517 | 2.29E-75 | -1.69E-46 |
| MS.gene057146 | MS.gene21253 | 0.811497 | 6.80E-51 | -1.69E-46 |
| MS.gene057246 | MS.gene21253 | 0.803289 | 3.74E-49 | -1.69E-46 |
| MS.gene057285 | MS.gene21253 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene057295 | MS.gene21253 | 0.824051 | 9.95E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene21253 | 0.825307 | 5.03E-54 | -1.69E-46 |
| MS.gene05735 | MS.gene21253 | 0.809608 | 1.74E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene21253 | 0.850409 | 1.73E-60 | -1.69E-46 |
| MS.gene057926 | MS.gene21253 | 0.852246 | 5.24E-61 | -1.69E-46 |
| MS.gene058019 | MS.gene21253 | 0.803904 | 2.79E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene21253 | 0.810863 | 9.33E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene21253 | 0.828839 | 7.19E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene21253 | 0.837722 | 4.39E-57 | -1.69E-46 |
| MS.gene058459 | MS.gene21253 | 0.845037 | 5.21E-59 | -1.69E-46 |
| MS.gene058660 | MS.gene21253 | 0.805721 | 1.16E-49 | -1.69E-46 |
| MS.gene058723 | MS.gene21253 | 0.846401 | 2.22E-59 | -1.69E-46 |
| MS.gene058773 | MS.gene21253 | 0.846728 | 1.81E-59 | -1.69E-46 |
| MS.gene058840 | MS.gene21253 | -0.825644 | 4.19E-54 | -1.69E-46 |
| MS.gene058903 | MS.gene21253 | 0.851487 | 8.59E-61 | -1.69E-46 |
| MS.gene059022 | MS.gene21253 | 0.836532 | 8.86E-57 | -1.69E-46 |
| MS.gene059029 | MS.gene21253 | 0.846223 | 2.49E-59 | -1.69E-46 |
| MS.gene05913 | MS.gene21253 | 0.824885 | 6.33E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene21253 | 0.828193 | 1.03E-54 | -1.69E-46 |
| MS.gene059677 | MS.gene21253 | 0.83714 | 6.19E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene21253 | 0.86758 | 1.23E-65 | -1.69E-46 |
| MS.gene059718 | MS.gene21253 | 0.8391 | 1.94E-57 | -1.69E-46 |
| MS.gene059858 | MS.gene21253 | 0.815294 | 9.95E-52 | -1.69E-46 |
| MS.gene05986 | MS.gene21253 | 0.802192 | 6.30E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene21253 | 0.824724 | 6.91E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene21253 | 0.859429 | 4.16E-63 | -1.69E-46 |
| MS.gene059974 | MS.gene21253 | 0.825734 | 3.99E-54 | -1.69E-46 |
| MS.gene060005 | MS.gene21253 | 0.810843 | 9.42E-51 | -1.69E-46 |
| MS.gene060193 | MS.gene21253 | 0.81137 | 7.24E-51 | -1.69E-46 |
| MS.gene060341 | MS.gene21253 | 0.811951 | 5.42E-51 | -1.69E-46 |
| MS.gene060356 | MS.gene21253 | 0.855394 | 6.50E-62 | -1.69E-46 |
| MS.gene060482 | MS.gene21253 | 0.819675 | 1.03E-52 | -1.69E-46 |
| MS.gene060727 | MS.gene21253 | 0.821251 | 4.46E-53 | -1.69E-46 |
| MS.gene060728 | MS.gene21253 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene06074 | MS.gene21253 | -0.820486 | 6.69E-53 | -1.69E-46 |
| MS.gene060799 | MS.gene21253 | 0.802093 | 6.61E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene21253 | 0.851023 | 1.16E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene21253 | 0.863589 | 2.23E-64 | -1.69E-46 |
| MS.gene060837 | MS.gene21253 | 0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene21253 | 0.857298 | 1.80E-62 | -1.69E-46 |
| MS.gene061134 | MS.gene21253 | 0.85344 | 2.39E-61 | -1.69E-46 |
| MS.gene061150 | MS.gene21253 | 0.806131 | 9.55E-50 | -1.69E-46 |
| MS.gene061171 | MS.gene21253 | 0.812027 | 5.21E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene21253 | 0.898858 | 3.51E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21253.t1 | MTR_5g067410 | 98.893 | 542 | 5 | 1 | 1 | 541 | 1 | 542 | 0.0 | 1100 |
| MS.gene21253.t1 | MTR_3g111190 | 80.669 | 538 | 94 | 3 | 1 | 538 | 1 | 528 | 0.0 | 891 |
| MS.gene21253.t1 | MTR_3g111190 | 86.374 | 433 | 58 | 1 | 106 | 538 | 1 | 432 | 0.0 | 780 |
| MS.gene21253.t1 | MTR_4g092820 | 66.865 | 504 | 162 | 4 | 36 | 538 | 27 | 526 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21253.t1 | AT1G58290 | 82.403 | 466 | 79 | 2 | 74 | 539 | 79 | 541 | 0.0 | 789 |
| MS.gene21253.t1 | AT1G09940 | 71.927 | 545 | 132 | 7 | 1 | 539 | 1 | 530 | 0.0 | 772 |
| MS.gene21253.t1 | AT2G31250 | 64.606 | 469 | 151 | 7 | 76 | 539 | 66 | 524 | 0.0 | 583 |
Find 103 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGAAATGTTTAGGTAAAA+TGG | 0.148078 | 5.1:-52280945 | MS.gene21253:CDS |
| AAGAAGAAGAACAGCATTTA+AGG | 0.152889 | 5.1:+52283210 | None:intergenic |
| TTCCTACCATTAAGAAATTA+AGG | 0.158017 | 5.1:-52281000 | MS.gene21253:CDS |
| CGCTTCATCTTCTGATGTTT+TGG | 0.184621 | 5.1:-52283096 | MS.gene21253:CDS |
| ACGCAATCACCGTCGGTAAA+AGG | 0.192964 | 5.1:-52281618 | MS.gene21253:CDS |
| TGAAACTGAGGTTTCTGTTT+TGG | 0.219895 | 5.1:-52280753 | MS.gene21253:CDS |
| GGGCTTATGCTGAAAGATTA+AGG | 0.231515 | 5.1:-52280979 | MS.gene21253:CDS |
| ATAAGCCCTTAATTTCTTAA+TGG | 0.241696 | 5.1:+52280994 | None:intergenic |
| TAGTTTCTATGGTGCTAAAT+TGG | 0.244077 | 5.1:-52283243 | MS.gene21253:CDS |
| ACACATGAACCTACGTTTCT+AGG | 0.249945 | 5.1:+52281181 | None:intergenic |
| GCTGTTTCAACTAGTTTCTA+TGG | 0.301919 | 5.1:-52283254 | MS.gene21253:CDS |
| GCTCTAGGCCATTCTGCTTC+TGG | 0.309364 | 5.1:+52282416 | None:intergenic |
| AGGAGCAGCATTGTCGTTAT+AGG | 0.317194 | 5.1:-52282488 | MS.gene21253:CDS |
| TCTTAGCCTGTCCTCTTTGT+TGG | 0.319230 | 5.1:+52281099 | None:intergenic |
| AGTTATTGGAGCTGGCAAAA+TGG | 0.324891 | 5.1:-52281482 | MS.gene21253:CDS |
| TCCTTTAGCAAGCGAAGAAA+TGG | 0.328100 | 5.1:-52281236 | MS.gene21253:CDS |
| ATATATCTCCATTCGGTTGC+AGG | 0.334402 | 5.1:+52282340 | None:intergenic |
| GCTGAGCTTGAGAAATGTTT+AGG | 0.335012 | 5.1:-52280953 | MS.gene21253:CDS |
| GTTATTGGAGCTGGCAAAAT+GGG | 0.335933 | 5.1:-52281481 | MS.gene21253:CDS |
| AAAGCAGGACAAGGAGTTAA+TGG | 0.352248 | 5.1:-52281673 | MS.gene21253:CDS |
| GATAATTTACAAACCCCTTT+CGG | 0.370528 | 5.1:-52281350 | MS.gene21253:CDS |
| TCCTACCATTAAGAAATTAA+GGG | 0.373626 | 5.1:-52280999 | MS.gene21253:CDS |
| GAGAAATGTTTAGGTAAAAT+GGG | 0.376514 | 5.1:-52280944 | MS.gene21253:CDS |
| AATGCAAGAATGCTAGTTAT+TGG | 0.382486 | 5.1:-52281496 | MS.gene21253:CDS |
| CAACATCATTTATTTCTTCA+CGG | 0.384102 | 5.1:+52281374 | None:intergenic |
| CGATGATCTTGAGTCTGTTA+AGG | 0.386630 | 5.1:-52281158 | MS.gene21253:CDS |
| GGTCTTGATTCTCTTGTAAT+GGG | 0.391946 | 5.1:-52281733 | MS.gene21253:CDS |
| GACCTGCTGATACTTCAAAA+AGG | 0.396196 | 5.1:+52281752 | None:intergenic |
| GGCTTATGCTGAAAGATTAA+GGG | 0.398014 | 5.1:-52280978 | MS.gene21253:CDS |
| GGACAAGGAGTTAATGGCTT+TGG | 0.405221 | 5.1:-52281667 | MS.gene21253:CDS |
| AGGTCTTGATTCTCTTGTAA+TGG | 0.410658 | 5.1:-52281734 | MS.gene21253:CDS |
| ATCAAACATTTGGTTGCAAA+AGG | 0.420709 | 5.1:-52281448 | MS.gene21253:CDS |
| GGTGATCATCGGCGAAGAAT+CGG | 0.423290 | 5.1:-52281059 | MS.gene21253:CDS |
| GAAGCTTGTGATCAAACATT+TGG | 0.426546 | 5.1:-52281458 | MS.gene21253:CDS |
| CTGTGGATGATCTTAGTAAA+GGG | 0.435856 | 5.1:-52280892 | MS.gene21253:CDS |
| TCGGAAATGCTCGAATGTAT+TGG | 0.438087 | 5.1:-52281331 | MS.gene21253:CDS |
| GGAGCAGCATTGTCGTTATA+GGG | 0.438522 | 5.1:-52282487 | MS.gene21253:CDS |
| CCCATTTCTTCGCTTGCTAA+AGG | 0.439472 | 5.1:+52281235 | None:intergenic |
| CGCAATCACCGTCGGTAAAA+GGG | 0.440824 | 5.1:-52281617 | MS.gene21253:CDS |
| AATCGGGACAATTTGAAGCT+TGG | 0.456577 | 5.1:-52281042 | MS.gene21253:CDS |
| AGGCCATTCTGCTTCTGGTA+TGG | 0.459415 | 5.1:+52282421 | None:intergenic |
| GATTGCTGCAACTCTCCCTT+CGG | 0.471622 | 5.1:+52281396 | None:intergenic |
| GTGATCATCGGCGAAGAATC+GGG | 0.471676 | 5.1:-52281058 | MS.gene21253:CDS |
| GGAGCAGAAGATTAGAGCTA+AGG | 0.475137 | 5.1:-52280732 | MS.gene21253:CDS |
| ATTGTGAATAAAATGCTTCA+TGG | 0.475489 | 5.1:-52280869 | MS.gene21253:CDS |
| CAATGTTGATGATCTTAAAG+AGG | 0.478016 | 5.1:-52281131 | MS.gene21253:CDS |
| ACATTCGAGCATTTCCGAAA+GGG | 0.488912 | 5.1:+52281336 | None:intergenic |
| CAAAGCTCACCAATGGCTCT+AGG | 0.509555 | 5.1:+52282401 | None:intergenic |
| CCTTTAGCAAGCGAAGAAAT+GGG | 0.509769 | 5.1:-52281235 | MS.gene21253:CDS |
| GCTGTGGATGATCTTAGTAA+AGG | 0.511697 | 5.1:-52280893 | MS.gene21253:CDS |
| TAAATGAGTAGTAACATAAG+AGG | 0.515917 | 5.1:+52283175 | None:intergenic |
| GCAGAATGGCCTAGAGCCAT+TGG | 0.516082 | 5.1:-52282410 | MS.gene21253:CDS |
| GATTCTCTTGTAATGGGAGA+AGG | 0.520460 | 5.1:-52281727 | MS.gene21253:CDS |
| TACTTTGACAGCTCTGATGC+AGG | 0.523941 | 5.1:+52281811 | None:intergenic |
| CATTCTTGCATTGCCATGTG+AGG | 0.524732 | 5.1:+52281507 | None:intergenic |
| TTGCCATGTGAGGCTTGATC+AGG | 0.526089 | 5.1:+52281517 | None:intergenic |
| TCACATCTCAAATGTTGCAT+TGG | 0.531540 | 5.1:+52280845 | None:intergenic |
| CGACAACATATATCTCCATT+CGG | 0.533183 | 5.1:+52282333 | None:intergenic |
| CCGCAATGTTAGTCTCAGTT+CGG | 0.534498 | 5.1:+52281593 | None:intergenic |
| TGGTGCAGTTTCTGTTAGCT+CGG | 0.542119 | 5.1:-52281569 | MS.gene21253:CDS |
| CAACTTGTTTGACTTGTGCA+AGG | 0.546113 | 5.1:+52281698 | None:intergenic |
| CATTCGAGCATTTCCGAAAG+GGG | 0.550182 | 5.1:+52281337 | None:intergenic |
| AAGAAAAGCAATGGAAGCAC+AGG | 0.550420 | 5.1:-52281080 | MS.gene21253:CDS |
| GCAGAAGATTAGAGCTAAGG+TGG | 0.550559 | 5.1:-52280729 | MS.gene21253:CDS |
| GTCAAACAAGTTGTGAAAGC+AGG | 0.553805 | 5.1:-52281688 | MS.gene21253:CDS |
| ATGCAACATTTGAGATGTGA+TGG | 0.556625 | 5.1:-52280842 | MS.gene21253:CDS |
| TCAAACATTTGGTTGCAAAA+GGG | 0.561106 | 5.1:-52281447 | MS.gene21253:CDS |
| TGATGATCTTAAAGAGGTTG+TGG | 0.565478 | 5.1:-52281125 | MS.gene21253:CDS |
| AGAATGCTAGTTATTGGAGC+TGG | 0.568228 | 5.1:-52281490 | MS.gene21253:CDS |
| GCCCTTAATTTCTTAATGGT+AGG | 0.568816 | 5.1:+52280998 | None:intergenic |
| ATGGAAGCACAGGTGATCAT+CGG | 0.577892 | 5.1:-52281070 | MS.gene21253:CDS |
| AATGTTTAGTCTTGAAACTG+AGG | 0.579905 | 5.1:-52280765 | MS.gene21253:CDS |
| CAAGTTGTGAAAGCAGGACA+AGG | 0.580921 | 5.1:-52281682 | MS.gene21253:CDS |
| TGGCTGCCAACAAAGAGGAC+AGG | 0.581027 | 5.1:-52281105 | MS.gene21253:CDS |
| GGACAGGCTAAGAAAAGCAA+TGG | 0.581200 | 5.1:-52281089 | MS.gene21253:CDS |
| TTGCCATACCAGAAGCAGAA+TGG | 0.581580 | 5.1:-52282424 | MS.gene21253:CDS |
| TACATTCGAGCATTTCCGAA+AGG | 0.590437 | 5.1:+52281335 | None:intergenic |
| GAACAGCATTTAAGGAACAA+AGG | 0.591818 | 5.1:+52283218 | None:intergenic |
| GTAGTTGTTAATCGAACCGA+AGG | 0.592291 | 5.1:-52281412 | MS.gene21253:CDS |
| CAACAGGATATACAAAGGAA+AGG | 0.593342 | 5.1:-52282508 | MS.gene21253:intron |
| TCTGAGCACCTGCAACCGAA+TGG | 0.595913 | 5.1:-52282348 | MS.gene21253:CDS |
| TTGATCAGGTAACTTCATCA+AGG | 0.596661 | 5.1:+52281531 | None:intergenic |
| GTGTCAAAGAAGTCACTGAA+TGG | 0.597620 | 5.1:-52282292 | MS.gene21253:CDS |
| ATTTCTGTTCCTAGAAACGT+AGG | 0.599065 | 5.1:-52281190 | MS.gene21253:CDS |
| ACTGAGACTAACATTGCGGC+TGG | 0.602580 | 5.1:-52281589 | MS.gene21253:CDS |
| GATGTGATGGGAGTGATAGT+AGG | 0.608822 | 5.1:-52280829 | MS.gene21253:CDS |
| TTCAAGCACGCAATCACCGT+CGG | 0.609589 | 5.1:-52281625 | MS.gene21253:CDS |
| CAGTGACTTCTTTGACACCA+CGG | 0.610814 | 5.1:+52282297 | None:intergenic |
| GTGTCATATTAATCTTACTG+TGG | 0.617221 | 5.1:+52280698 | None:intergenic |
| TTACCTGATCAAGCCTCACA+TGG | 0.622088 | 5.1:-52281520 | MS.gene21253:CDS |
| CAGATTACAAAGCTCACCAA+TGG | 0.622987 | 5.1:+52282394 | None:intergenic |
| TAGCAAGCGAAGAAATGGGA+GGG | 0.637799 | 5.1:-52281231 | MS.gene21253:CDS |
| TTATTGGAGCTGGCAAAATG+GGG | 0.640758 | 5.1:-52281480 | MS.gene21253:CDS |
| ACAGATTTAGCATTATCACT+AGG | 0.641571 | 5.1:+52283068 | None:intergenic |
| GAACAGAAATATCAACGAAG+AGG | 0.651799 | 5.1:+52281203 | None:intergenic |
| GGTTGTGGCTGCCAACAAAG+AGG | 0.660579 | 5.1:-52281110 | MS.gene21253:CDS |
| GGCTTTGGTAGAAACATCAG+TGG | 0.667204 | 5.1:-52281652 | MS.gene21253:CDS |
| TGCAACATTTGAGATGTGAT+GGG | 0.668284 | 5.1:-52280841 | MS.gene21253:CDS |
| GCTTTCAACAGGATATACAA+AGG | 0.679814 | 5.1:-52282513 | MS.gene21253:intron |
| TTAGCAAGCGAAGAAATGGG+AGG | 0.688497 | 5.1:-52281232 | MS.gene21253:CDS |
| GTCGCACTTTCTCAGCACCG+TGG | 0.705085 | 5.1:-52282314 | MS.gene21253:CDS |
| CCGAACTGAGACTAACATTG+CGG | 0.747883 | 5.1:-52281593 | MS.gene21253:CDS |
| TAGTTGTTAATCGAACCGAA+GGG | 0.773384 | 5.1:-52281411 | MS.gene21253:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATCAATTATAATTTGT+TGG | - | chr5.1:52281046-52281065 | MS.gene21253:CDS | 10.0% |
| !!! | TTTTTTTAGTTAATAATGAA+TGG | - | chr5.1:52280980-52280999 | MS.gene21253:CDS | 10.0% |
| !! | AGAATATAATTTCTCTATAT+GGG | - | chr5.1:52281280-52281299 | MS.gene21253:CDS | 15.0% |
| !! | ATAGAAATAGATTATACATT+AGG | - | chr5.1:52281887-52281906 | MS.gene21253:intron | 15.0% |
| !! | TAAATATCTACATATATGTT+TGG | - | chr5.1:52281750-52281769 | MS.gene21253:CDS | 15.0% |
| !! | TGAAATTAACTTTATGAAAA+TGG | - | chr5.1:52281434-52281453 | MS.gene21253:CDS | 15.0% |
| !! | AACTAAAAAAACATTCAAAG+AGG | + | chr5.1:52280971-52280990 | None:intergenic | 20.0% |
| !! | AATTAAACACATGAAAGTTA+TGG | - | chr5.1:52281203-52281222 | MS.gene21253:CDS | 20.0% |
| !! | CTGAAAATCTTGTATTAATT+GGG | + | chr5.1:52281136-52281155 | None:intergenic | 20.0% |
| !! | CTTTATTATGTTATATTCCT+CGG | - | chr5.1:52281368-52281387 | MS.gene21253:CDS | 20.0% |
| !! | GAGAATATAATTTCTCTATA+TGG | - | chr5.1:52281279-52281298 | MS.gene21253:CDS | 20.0% |
| !! | TAATGAATGGTTCAATTATA+TGG | - | chr5.1:52280993-52281012 | MS.gene21253:CDS | 20.0% |
| !!! | ACATTTTGTTTCAAAATCAA+AGG | + | chr5.1:52282704-52282723 | None:intergenic | 20.0% |
| !!! | ACTACTCATTTATCATTTTT+TGG | - | chr5.1:52280805-52280824 | MS.gene21253:CDS | 20.0% |
| !!! | GATTTTGAAACAAAATGTTA+AGG | - | chr5.1:52282706-52282725 | MS.gene21253:intron | 20.0% |
| !!! | TTCTATTCTATTTTCAACAT+AGG | + | chr5.1:52281335-52281354 | None:intergenic | 20.0% |
| ! | AAACAAATTGAGTGTATGTT+TGG | + | chr5.1:52282069-52282088 | None:intergenic | 25.0% |
| ! | AATTATATGGTTAAGGTTAG+TGG | - | chr5.1:52281006-52281025 | MS.gene21253:CDS | 25.0% |
| ! | ATAAGCCCTTAATTTCTTAA+TGG | + | chr5.1:52282978-52282997 | None:intergenic | 25.0% |
| ! | ATGGTTCAATTATATGGTTA+AGG | - | chr5.1:52280999-52281018 | MS.gene21253:CDS | 25.0% |
| ! | ATTGTGAATAAAATGCTTCA+TGG | - | chr5.1:52283100-52283119 | MS.gene21253:CDS | 25.0% |
| ! | CATCTTAATGAAGAACTATA+CGG | + | chr5.1:52281306-52281325 | None:intergenic | 25.0% |
| ! | CCTGAAAATCTTGTATTAAT+TGG | + | chr5.1:52281137-52281156 | None:intergenic | 25.0% |
| ! | GAGAAATGTTTAGGTAAAAT+GGG | - | chr5.1:52283025-52283044 | MS.gene21253:intron | 25.0% |
| ! | GATGGTTAGTGAATATAATA+AGG | - | chr5.1:52281107-52281126 | MS.gene21253:CDS | 25.0% |
| ! | GGTTAATTATGTTTAGTAGA+TGG | - | chr5.1:52281089-52281108 | MS.gene21253:CDS | 25.0% |
| ! | TAAATGAGTAGTAACATAAG+AGG | + | chr5.1:52280797-52280816 | None:intergenic | 25.0% |
| ! | TAGGTTTATTTGTAGACATA+AGG | - | chr5.1:52281784-52281803 | MS.gene21253:CDS | 25.0% |
| ! | TCCTACCATTAAGAAATTAA+GGG | - | chr5.1:52282970-52282989 | MS.gene21253:intron | 25.0% |
| ! | TGAGAAATGTTTAGGTAAAA+TGG | - | chr5.1:52283024-52283043 | MS.gene21253:intron | 25.0% |
| ! | TTACATTTGATCACAAATTG+TGG | - | chr5.1:52281158-52281177 | MS.gene21253:CDS | 25.0% |
| ! | TTCCTACCATTAAGAAATTA+AGG | - | chr5.1:52282969-52282988 | MS.gene21253:intron | 25.0% |
| !! | CAACATCATTTATTTCTTCA+CGG | + | chr5.1:52282598-52282617 | None:intergenic | 25.0% |
| !! | CCAATTAATACAAGATTTTC+AGG | - | chr5.1:52281134-52281153 | MS.gene21253:CDS | 25.0% |
| !! | TCTATTGCATTGATACATAT+TGG | - | chr5.1:52282095-52282114 | MS.gene21253:intron | 25.0% |
| !!! | TCTATTTTTGCTATACAACA+AGG | - | chr5.1:52282181-52282200 | MS.gene21253:intron | 25.0% |
| AAGAAGAAGAACAGCATTTA+AGG | + | chr5.1:52280762-52280781 | None:intergenic | 30.0% | |
| AATGCAAGAATGCTAGTTAT+TGG | - | chr5.1:52282473-52282492 | MS.gene21253:CDS | 30.0% | |
| ACAGATTTAGCATTATCACT+AGG | + | chr5.1:52280904-52280923 | None:intergenic | 30.0% | |
| ATCAAACATTTGGTTGCAAA+AGG | - | chr5.1:52282521-52282540 | MS.gene21253:intron | 30.0% | |
| ATGTTTGGATTGACATGTTT+AGG | - | chr5.1:52281765-52281784 | MS.gene21253:CDS | 30.0% | |
| CTCAAAAAAATTAACCATCC+AGG | + | chr5.1:52281262-52281281 | None:intergenic | 30.0% | |
| GACGGTGTATATTTGAATTT+CGG | + | chr5.1:52282043-52282062 | None:intergenic | 30.0% | |
| GATAATTTACAAACCCCTTT+CGG | - | chr5.1:52282619-52282638 | MS.gene21253:intron | 30.0% | |
| GATCACAAATTGTGGTTAAT+GGG | - | chr5.1:52281166-52281185 | MS.gene21253:CDS | 30.0% | |
| GTTAATGCAGTTTGAATACA+TGG | - | chr5.1:52281068-52281087 | MS.gene21253:CDS | 30.0% | |
| TCAAACATTTGGTTGCAAAA+GGG | - | chr5.1:52282522-52282541 | MS.gene21253:intron | 30.0% | |
| TGATCACAAATTGTGGTTAA+TGG | - | chr5.1:52281165-52281184 | MS.gene21253:CDS | 30.0% | |
| TTATGAAAATGGCTTTCAAC+AGG | - | chr5.1:52281445-52281464 | MS.gene21253:CDS | 30.0% | |
| ! | TAGTTTCTATGGTGCTAAAT+TGG | - | chr5.1:52280726-52280745 | MS.gene21253:CDS | 30.0% |
| !! | AAAAAGAGCTTTGTTCAAAG+AGG | - | chr5.1:52280835-52280854 | MS.gene21253:CDS | 30.0% |
| !! | AATGTTTAGTCTTGAAACTG+AGG | - | chr5.1:52283204-52283223 | MS.gene21253:CDS | 30.0% |
| !! | CAATGTTGATGATCTTAAAG+AGG | - | chr5.1:52282838-52282857 | MS.gene21253:intron | 30.0% |
| AGGTCTTGATTCTCTTGTAA+TGG | - | chr5.1:52282235-52282254 | MS.gene21253:intron | 35.0% | |
| ATCGTGATTAATTACGTTCC+TGG | - | chr5.1:52281241-52281260 | MS.gene21253:CDS | 35.0% | |
| ATTTCTGTTCCTAGAAACGT+AGG | - | chr5.1:52282779-52282798 | MS.gene21253:intron | 35.0% | |
| CAACAGGATATACAAAGGAA+AGG | - | chr5.1:52281461-52281480 | MS.gene21253:CDS | 35.0% | |
| CGACAACATATATCTCCATT+CGG | + | chr5.1:52281639-52281658 | None:intergenic | 35.0% | |
| CTGTGGATGATCTTAGTAAA+GGG | - | chr5.1:52283077-52283096 | MS.gene21253:CDS | 35.0% | |
| GAACAGAAATATCAACGAAG+AGG | + | chr5.1:52282769-52282788 | None:intergenic | 35.0% | |
| GAACAGCATTTAAGGAACAA+AGG | + | chr5.1:52280754-52280773 | None:intergenic | 35.0% | |
| GAAGCTTGTGATCAAACATT+TGG | - | chr5.1:52282511-52282530 | MS.gene21253:intron | 35.0% | |
| GCCCTTAATTTCTTAATGGT+AGG | + | chr5.1:52282974-52282993 | None:intergenic | 35.0% | |
| GCTTTCAACAGGATATACAA+AGG | - | chr5.1:52281456-52281475 | MS.gene21253:CDS | 35.0% | |
| GGAAAAAAGTGAACCTACAT+TGG | + | chr5.1:52281707-52281726 | None:intergenic | 35.0% | |
| GGCTTATGCTGAAAGATTAA+GGG | - | chr5.1:52282991-52283010 | MS.gene21253:intron | 35.0% | |
| GGTCTTGATTCTCTTGTAAT+GGG | - | chr5.1:52282236-52282255 | MS.gene21253:intron | 35.0% | |
| TAAGAAGACACAAAAAGCTG+TGG | - | chr5.1:52283060-52283079 | MS.gene21253:CDS | 35.0% | |
| TAGTTGTTAATCGAACCGAA+GGG | - | chr5.1:52282558-52282577 | MS.gene21253:intron | 35.0% | |
| TCACATCTCAAATGTTGCAT+TGG | + | chr5.1:52283127-52283146 | None:intergenic | 35.0% | |
| TGAGTGTATGTTTGGATTGA+CGG | + | chr5.1:52282061-52282080 | None:intergenic | 35.0% | |
| TGATGATCTTAAAGAGGTTG+TGG | - | chr5.1:52282844-52282863 | MS.gene21253:intron | 35.0% | |
| TGATTAATTACGTTCCTGGA+TGG | - | chr5.1:52281245-52281264 | MS.gene21253:CDS | 35.0% | |
| TGCAAGAATTAGTGCATGAT+TGG | - | chr5.1:52281979-52281998 | MS.gene21253:intron | 35.0% | |
| TTGATCAGGTAACTTCATCA+AGG | + | chr5.1:52282441-52282460 | None:intergenic | 35.0% | |
| TTTCACAAGAACTGCGTATA+GGG | + | chr5.1:52281728-52281747 | None:intergenic | 35.0% | |
| ! | ATGCAACATTTGAGATGTGA+TGG | - | chr5.1:52283127-52283146 | MS.gene21253:CDS | 35.0% |
| ! | GCTGTTTCAACTAGTTTCTA+TGG | - | chr5.1:52280715-52280734 | MS.gene21253:CDS | 35.0% |
| ! | TGAAACTGAGGTTTCTGTTT+TGG | - | chr5.1:52283216-52283235 | MS.gene21253:CDS | 35.0% |
| ! | TGCAAAAGGGTGTAAAAAGA+TGG | - | chr5.1:52282535-52282554 | MS.gene21253:intron | 35.0% |
| ! | TGCAACATTTGAGATGTGAT+GGG | - | chr5.1:52283128-52283147 | MS.gene21253:CDS | 35.0% |
| !!! | ATTCTTGTTTTGCAGACAAG+TGG | - | chr5.1:52282131-52282150 | MS.gene21253:intron | 35.0% |
| AAAGCAGGACAAGGAGTTAA+TGG | - | chr5.1:52282296-52282315 | MS.gene21253:CDS | 40.0% | |
| ACACATGAACCTACGTTTCT+AGG | + | chr5.1:52282791-52282810 | None:intergenic | 40.0% | |
| ACATTCGAGCATTTCCGAAA+GGG | + | chr5.1:52282636-52282655 | None:intergenic | 40.0% | |
| ACTGAATGGATGTCCAATGT+AGG | - | chr5.1:52281691-52281710 | MS.gene21253:CDS | 40.0% | |
| AGAATGCTAGTTATTGGAGC+TGG | - | chr5.1:52282479-52282498 | MS.gene21253:CDS | 40.0% | |
| AGTTATTGGAGCTGGCAAAA+TGG | - | chr5.1:52282487-52282506 | MS.gene21253:CDS | 40.0% | |
| ATATATCTCCATTCGGTTGC+AGG | + | chr5.1:52281632-52281651 | None:intergenic | 40.0% | |
| CACTAATTCTTGCACGAACT+CGG | + | chr5.1:52281973-52281992 | None:intergenic | 40.0% | |
| CAGATTACAAAGCTCACCAA+TGG | + | chr5.1:52281578-52281597 | None:intergenic | 40.0% | |
| CCTTTAGCAAGCGAAGAAAT+GGG | - | chr5.1:52282734-52282753 | MS.gene21253:intron | 40.0% | |
| CGATGATCTTGAGTCTGTTA+AGG | - | chr5.1:52282811-52282830 | MS.gene21253:intron | 40.0% | |
| CTTTCACAAGAACTGCGTAT+AGG | + | chr5.1:52281729-52281748 | None:intergenic | 40.0% | |
| GACCTGCTGATACTTCAAAA+AGG | + | chr5.1:52282220-52282239 | None:intergenic | 40.0% | |
| GCTGAGCTTGAGAAATGTTT+AGG | - | chr5.1:52283016-52283035 | MS.gene21253:intron | 40.0% | |
| GCTGTGGATGATCTTAGTAA+AGG | - | chr5.1:52283076-52283095 | MS.gene21253:CDS | 40.0% | |
| GGGCTTATGCTGAAAGATTA+AGG | - | chr5.1:52282990-52283009 | MS.gene21253:intron | 40.0% | |
| GTAGTTGTTAATCGAACCGA+AGG | - | chr5.1:52282557-52282576 | MS.gene21253:intron | 40.0% | |
| GTCAAACAAGTTGTGAAAGC+AGG | - | chr5.1:52282281-52282300 | MS.gene21253:intron | 40.0% | |
| GTGTCAAAGAAGTCACTGAA+TGG | - | chr5.1:52281677-52281696 | MS.gene21253:CDS | 40.0% | |
| GTTATTGGAGCTGGCAAAAT+GGG | - | chr5.1:52282488-52282507 | MS.gene21253:CDS | 40.0% | |
| TACATTCGAGCATTTCCGAA+AGG | + | chr5.1:52282637-52282656 | None:intergenic | 40.0% | |
| TCCTTTAGCAAGCGAAGAAA+TGG | - | chr5.1:52282733-52282752 | MS.gene21253:intron | 40.0% | |
| TCGATGACTAATATCTACCG+AGG | + | chr5.1:52281388-52281407 | None:intergenic | 40.0% | |
| TCGGAAATGCTCGAATGTAT+TGG | - | chr5.1:52282638-52282657 | MS.gene21253:intron | 40.0% | |
| TTAGTGCATGATTGGAACCA+CGG | - | chr5.1:52281987-52282006 | MS.gene21253:intron | 40.0% | |
| TTATTGGAGCTGGCAAAATG+GGG | - | chr5.1:52282489-52282508 | MS.gene21253:CDS | 40.0% | |
| ! | AAGAAAAGCAATGGAAGCAC+AGG | - | chr5.1:52282889-52282908 | MS.gene21253:intron | 40.0% |
| ! | AATCGGGACAATTTGAAGCT+TGG | - | chr5.1:52282927-52282946 | MS.gene21253:intron | 40.0% |
| ! | CGCTTCATCTTCTGATGTTT+TGG | - | chr5.1:52280873-52280892 | MS.gene21253:CDS | 40.0% |
| ! | GATTCTCTTGTAATGGGAGA+AGG | - | chr5.1:52282242-52282261 | MS.gene21253:intron | 40.0% |
| !! | CAACTTGTTTGACTTGTGCA+AGG | + | chr5.1:52282274-52282293 | None:intergenic | 40.0% |
| !!! | CACCTTTTTGAAGTATCAGC+AGG | - | chr5.1:52282215-52282234 | MS.gene21253:intron | 40.0% |
| AGGAGCAGCATTGTCGTTAT+AGG | - | chr5.1:52281481-52281500 | MS.gene21253:CDS | 45.0% | |
| CAAGTTGTGAAAGCAGGACA+AGG | - | chr5.1:52282287-52282306 | MS.gene21253:CDS | 45.0% | |
| CAGTGACTTCTTTGACACCA+CGG | + | chr5.1:52281675-52281694 | None:intergenic | 45.0% | |
| CATTCGAGCATTTCCGAAAG+GGG | + | chr5.1:52282635-52282654 | None:intergenic | 45.0% | |
| CATTCTTGCATTGCCATGTG+AGG | + | chr5.1:52282465-52282484 | None:intergenic | 45.0% | |
| CCGAACTGAGACTAACATTG+CGG | - | chr5.1:52282376-52282395 | MS.gene21253:CDS | 45.0% | |
| GCAGAAGATTAGAGCTAAGG+TGG | - | chr5.1:52283240-52283259 | MS.gene21253:CDS | 45.0% | |
| GGACAAGGAGTTAATGGCTT+TGG | - | chr5.1:52282302-52282321 | MS.gene21253:CDS | 45.0% | |
| GGACAGGCTAAGAAAAGCAA+TGG | - | chr5.1:52282880-52282899 | MS.gene21253:intron | 45.0% | |
| GGAGCAGAAGATTAGAGCTA+AGG | - | chr5.1:52283237-52283256 | MS.gene21253:CDS | 45.0% | |
| GGAGCAGCATTGTCGTTATA+GGG | - | chr5.1:52281482-52281501 | MS.gene21253:CDS | 45.0% | |
| TAGCAAGCGAAGAAATGGGA+GGG | - | chr5.1:52282738-52282757 | MS.gene21253:intron | 45.0% | |
| TCTTAGCCTGTCCTCTTTGT+TGG | + | chr5.1:52282873-52282892 | None:intergenic | 45.0% | |
| TGGTGCAGTTTCTGTTAGCT+CGG | - | chr5.1:52282400-52282419 | MS.gene21253:CDS | 45.0% | |
| TTACCTGATCAAGCCTCACA+TGG | - | chr5.1:52282449-52282468 | MS.gene21253:CDS | 45.0% | |
| TTAGCAAGCGAAGAAATGGG+AGG | - | chr5.1:52282737-52282756 | MS.gene21253:intron | 45.0% | |
| TTGCCATACCAGAAGCAGAA+TGG | - | chr5.1:52281545-52281564 | MS.gene21253:CDS | 45.0% | |
| TTGTAGCTTCAAGCTTACCG+TGG | + | chr5.1:52282007-52282026 | None:intergenic | 45.0% | |
| ! | AGTTTTTCGCGCACATTGAC+TGG | + | chr5.1:52281526-52281545 | None:intergenic | 45.0% |
| ! | ATGGAAGCACAGGTGATCAT+CGG | - | chr5.1:52282899-52282918 | MS.gene21253:intron | 45.0% |
| ! | CCCATTTCTTCGCTTGCTAA+AGG | + | chr5.1:52282737-52282756 | None:intergenic | 45.0% |
| ! | CCGCAATGTTAGTCTCAGTT+CGG | + | chr5.1:52282379-52282398 | None:intergenic | 45.0% |
| ! | GATGTGATGGGAGTGATAGT+AGG | - | chr5.1:52283140-52283159 | MS.gene21253:CDS | 45.0% |
| ! | GGCTTTGGTAGAAACATCAG+TGG | - | chr5.1:52282317-52282336 | MS.gene21253:CDS | 45.0% |
| ! | TACTTTGACAGCTCTGATGC+AGG | + | chr5.1:52282161-52282180 | None:intergenic | 45.0% |
| ACGCAATCACCGTCGGTAAA+AGG | - | chr5.1:52282351-52282370 | MS.gene21253:CDS | 50.0% | |
| ACTGAGACTAACATTGCGGC+TGG | - | chr5.1:52282380-52282399 | MS.gene21253:CDS | 50.0% | |
| AGGCCATTCTGCTTCTGGTA+TGG | + | chr5.1:52281551-52281570 | None:intergenic | 50.0% | |
| CAAAGCTCACCAATGGCTCT+AGG | + | chr5.1:52281571-52281590 | None:intergenic | 50.0% | |
| CGCAATCACCGTCGGTAAAA+GGG | - | chr5.1:52282352-52282371 | MS.gene21253:CDS | 50.0% | |
| GATTGCTGCAACTCTCCCTT+CGG | + | chr5.1:52282576-52282595 | None:intergenic | 50.0% | |
| GGTGATCATCGGCGAAGAAT+CGG | - | chr5.1:52282910-52282929 | MS.gene21253:intron | 50.0% | |
| GTGATCATCGGCGAAGAATC+GGG | - | chr5.1:52282911-52282930 | MS.gene21253:intron | 50.0% | |
| TTCAAGCACGCAATCACCGT+CGG | - | chr5.1:52282344-52282363 | MS.gene21253:CDS | 50.0% | |
| TTGCCATGTGAGGCTTGATC+AGG | + | chr5.1:52282455-52282474 | None:intergenic | 50.0% | |
| ! | AGTTCGGACCCTTTTACCGA+CGG | + | chr5.1:52282363-52282382 | None:intergenic | 50.0% |
| GCAGAATGGCCTAGAGCCAT+TGG | - | chr5.1:52281559-52281578 | MS.gene21253:CDS | 55.0% | |
| GGTTGTGGCTGCCAACAAAG+AGG | - | chr5.1:52282859-52282878 | MS.gene21253:intron | 55.0% | |
| TCTGAGCACCTGCAACCGAA+TGG | - | chr5.1:52281621-52281640 | MS.gene21253:CDS | 55.0% | |
| TGGCTGCCAACAAAGAGGAC+AGG | - | chr5.1:52282864-52282883 | MS.gene21253:intron | 55.0% | |
| ! | GCTCTAGGCCATTCTGCTTC+TGG | + | chr5.1:52281556-52281575 | None:intergenic | 55.0% |
| GTCGCACTTTCTCAGCACCG+TGG | - | chr5.1:52281655-52281674 | MS.gene21253:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 52280712 | 52283279 | 52280712 | ID=MS.gene21253 |
| chr5.1 | mRNA | 52280712 | 52283279 | 52280712 | ID=MS.gene21253.t1;Parent=MS.gene21253 |
| chr5.1 | exon | 52283030 | 52283279 | 52283030 | ID=MS.gene21253.t1.exon1;Parent=MS.gene21253.t1 |
| chr5.1 | CDS | 52283030 | 52283279 | 52283030 | ID=cds.MS.gene21253.t1;Parent=MS.gene21253.t1 |
| chr5.1 | exon | 52282283 | 52282524 | 52282283 | ID=MS.gene21253.t1.exon2;Parent=MS.gene21253.t1 |
| chr5.1 | CDS | 52282283 | 52282524 | 52282283 | ID=cds.MS.gene21253.t1;Parent=MS.gene21253.t1 |
| chr5.1 | exon | 52280712 | 52281845 | 52280712 | ID=MS.gene21253.t1.exon3;Parent=MS.gene21253.t1 |
| chr5.1 | CDS | 52280712 | 52281845 | 52280712 | ID=cds.MS.gene21253.t1;Parent=MS.gene21253.t1 |
| Gene Sequence |
| Protein sequence |
